####Specific command
Rscript pie-plot.R 

###Supplementary Instructions

##Source of data.txt file in input
##Using find_result.py data_sports/output/*_result/*_summary.txt  results are merged to get columns 3-10
##less data_sports/input *.fastq|grep ^+|wc -l get the second column
##The results in the last column are data_sports/output/*_fa/*_unmatch_genome.fa (uniq reads)  converted to total reads and the number of SARS-CoV-2 genome aligned using bowtie 
#Precautions
#pie-plot.R is written in Windows RStudio and is not suitable for linux. If you use it in Linux, please modify the script

#pie-new.pdf is the result of running the script
#pie-new_AI modified .pdf is the result of pie-new.pdf modified in Adobe Illustrator
