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<front>
<?covid-19-tdm?>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Bioeng. Biotechnol.</journal-id>
<journal-title>Frontiers in Bioengineering and Biotechnology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Bioeng. Biotechnol.</abbrev-journal-title>
<issn pub-type="epub">2296-4185</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">699025</article-id>
<article-id pub-id-type="doi">10.3389/fbioe.2021.699025</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Bioengineering and Biotechnology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Cell-Free Glycoengineering of the Recombinant SARS-CoV-2 Spike Glycoprotein</article-title>
<alt-title alt-title-type="left-running-head">Ruhnau et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Glycoengineering SARS-CoV-2 Spike</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Ruhnau</surname>
<given-names>Johannes</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="fn" rid="fn1">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1336551/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Grote</surname>
<given-names>Valerian</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="fn" rid="fn1">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1336084/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Juarez-Osorio</surname>
<given-names>Mariana</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bruder</surname>
<given-names>Dunja</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mahour</surname>
<given-names>Reza</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rapp</surname>
<given-names>Erdmann</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/536040/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Rexer</surname>
<given-names>Thomas F. T.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1313895/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Reichl</surname>
<given-names>Udo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/509704/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>Max Planck Institute for Dynamics of Complex Technical Systems, Bioprocess Engineering, <addr-line>Magdeburg</addr-line>, <country>Germany</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>Infection Immunology, Institute of Medical Microbiology, Infection Prevention and Control, Health Campus Immunology, Infectiology and Inflammation, Otto-von-Guericke University Magdeburg, <addr-line>Magdeburg</addr-line>, <country>Germany</country>
</aff>
<aff id="aff3">
<label>
<sup>3</sup>
</label>Immune Regulation Group, Helmholtz Centre for Infection Research, <addr-line>Braunschweig</addr-line>, <country>Germany</country>
</aff>
<aff id="aff4">
<label>
<sup>4</sup>
</label>glyXera GmbH, <addr-line>Magdeburg</addr-line>, <country>Germany</country>
</aff>
<aff id="aff5">
<label>
<sup>5</sup>
</label>Otto-von-Guericke University Magdeburg, Chair of Bioprocess Engineering, <addr-line>Magdeburg</addr-line>, <country>Germany</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/91645/overview">Dong-Yup Lee</ext-link>, Sungkyunkwan University, South Korea</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/689434/overview">Dong-Myung Kim</ext-link>, Chungnam National University, South Korea</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/164962/overview">Alexander D. Frey</ext-link>, Aalto University, Finland</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Thomas F. T. Rexer, <email>rexer@mpi-magdeburg.mpg.de</email>
</corresp>
<fn fn-type="equal" id="fn1">
<label>
<sup>&#x2020;</sup>
</label>
<p>These authors share first authorship</p>
</fn>
<fn fn-type="other">
<p>This article was submitted to Synthetic Biology, a section of the journal Frontiers in Bioengineering and Biotechnology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>08</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>9</volume>
<elocation-id>699025</elocation-id>
<history>
<date date-type="received">
<day>22</day>
<month>04</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>15</day>
<month>07</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Ruhnau, Grote, Juarez-Osorio, Bruder, Mahour, Rapp, Rexer and Reichl.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Ruhnau, Grote, Juarez-Osorio, Bruder, Mahour, Rapp, Rexer and Reichl</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>The baculovirus-insect cell expression system is readily utilized to produce viral glycoproteins for research as well as for subunit vaccines and vaccine candidates, for instance against SARS-CoV-2 infections. However, the glycoforms of recombinant proteins derived from this expression system are inherently different from mammalian cell-derived glycoforms with mainly complex-type <italic>N-</italic>glycans attached, and the impact of these differences in protein glycosylation on the immunogenicity is severely under investigated. This applies also to the SARS-CoV-2 spike glycoprotein, which is the antigen target of all licensed vaccines and vaccine candidates including virus like particles and subunit vaccines that are variants of the spike protein. Here, we expressed the transmembrane-deleted human <italic>&#x3b2;</italic>-1,2&#xa0;N-acetlyglucosamintransferases I and II (MGAT1&#x394;TM and MGAT2&#x394;TM) and the <italic>&#x3b2;</italic>-1,4-galactosyltransferase (GalT&#x394;TM) in <italic>E.&#x20;coli</italic> to <italic>in-vitro</italic> remodel the <italic>N</italic>-glycans of a recombinant SARS-CoV-2 spike glycoprotein derived from insect cells. In a cell-free sequential one-pot reaction, fucosylated and afucosylated paucimannose-type <italic>N</italic>-glycans were converted to complex-type galactosylated <italic>N</italic>-glycans. In the future, this <italic>in-vitro</italic> glycoengineering approach can be used to efficiently generate a wide range of <italic>N</italic>-glycans on antigens considered as vaccine candidates for animal trials and preclinical testing to better characterize the impact of <italic>N</italic>-glycosylation on immunity and to improve the efficacy of protein subunit vaccines.</p>
</abstract>
<kwd-group>
<kwd>SARS-CoV-2</kwd>
<kwd>COVID- 19</kwd>
<kwd>glycoengineering</kwd>
<kwd>subunit vaccine</kwd>
<kwd>cell-free synthetic biology</kwd>
</kwd-group>
<contract-sponsor id="cn001">Deutsche Forschungsgemeinschaft<named-content content-type="fundref-id">10.13039/501100001659</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Most epidemics caused by viral infections that are associated with a significant death toll were caused by enveloped viruses such as influenza A virus, human immunodeficiency virus (HIV), Zika virus, Yellow fever virus, Dengue virus and Ebolavirus. Often, the main target for neutralizing antibodies to evoke a strong immune response is a glycosylated envelope membrane protein. Thus, in the development of vaccines, glycoproteins are typically in the focus of interest. In general, the glycosylation of proteins plays a critical role regarding structure, function, solubility, stability, trafficking, and ligand-binding (<xref ref-type="bibr" rid="B23">Imperiali and O&#x2019;connor, 1999</xref>; <xref ref-type="bibr" rid="B9">Dalziel et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B51">Varki, 2017</xref>). Furthermore, glycosylation plays a major role for pharmacokinetics and pharmacodynamics of biologics and for pathogen-host interaction (<xref ref-type="bibr" rid="B1">Bagdonaite and Wandall, 2018</xref>; <xref ref-type="bibr" rid="B7">Cymer et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B56">Watanabe et&#x20;al., 2019</xref>). In viral pathogenesis, glycosylation affects the attachment and release of virus particles as well as immune evasion (<xref ref-type="bibr" rid="B1">Bagdonaite and Wandall, 2018</xref>; <xref ref-type="bibr" rid="B56">Watanabe et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B41">Sch&#xf6;n et&#x20;al., 2020</xref>). Especially the latter is a major hurdle for vaccine design. The mode of actions that are known to be employed to invade the immune system are secretion and shedding of glycoproteins that function as a decoy to the immune system, and the shielding of epitopes (<xref ref-type="bibr" rid="B56">Watanabe et&#x20;al., 2019</xref>). The latter is facilitated by occluding antigenic epitopes with host-derived glycans that are obtained through hijacking the host&#x2019;s cellular glycosylation machinery (<xref ref-type="bibr" rid="B42">Schwarzer et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B12">Francica et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B19">Helle et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B39">R&#xf6;dig et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B40">R&#xf6;dig et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B45">Sommerstein et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B2">Behrens et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B17">Gram et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B53">Walls et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B33">Pralow et&#x20;al., 2021</xref>). Moreover, it has been shown that also the glycoform itself can have an impact on binding and transmission assay as well as on transmissibility, antigenicity, and immunogenicity in animal models (<xref ref-type="bibr" rid="B27">Lin et&#x20;al., 2003</xref>; <xref ref-type="bibr" rid="B22">H&#xfc;tter et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B6">Chen et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B26">Li et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B16">Go et&#x20;al., 2017</xref>). While it is assumed that immunogenic antigens benefit from mimicking the glycosylation of host cell proteins, it has also been proposed that modification of specific terminal sugar residues could be used to amplify vaccine efficacy (<xref ref-type="bibr" rid="B14">Galili, 2020</xref>; <xref ref-type="bibr" rid="B5">Chen, 2021</xref>). However, due to the complexity of protein glycosylation and the prevailing lack of methods to introduce defined modifications in the glycan composition of the proteins of interest, the topic is under investigated (<xref ref-type="bibr" rid="B56">Watanabe et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B18">Grant et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B41">Sch&#xf6;n et&#x20;al., 2020</xref>).</p>
<p>The ongoing corona virus disease 2019 (COVID-19) pandemic is caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)&#x2014;a single-stranded, positive-sense RNA virus (<xref ref-type="bibr" rid="B52">Walls et&#x20;al., 2020</xref>). Its membrane envelope consists of three membrane proteins: the surface spike (S) glycoprotein, an integral membrane protein and an envelope protein (<xref ref-type="bibr" rid="B54">Wan et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B59">Zhou et&#x20;al., 2020</xref>). Virus entry into human host cells is mediated by the S glycoprotein that binds to angiotensin-converting enzyme 2 (<xref ref-type="bibr" rid="B52">Walls et&#x20;al., 2020</xref>). The S protein has 22&#x20;N-linked glycosylation sites. Thus, it is significantly more glycosylated than, for instance, the influenza A hemagglutinin (<xref ref-type="bibr" rid="B57">Wrapp et&#x20;al., 2020</xref>). For the SARS-CoV-1 spike protein it has been shown previously that <italic>N</italic>-glycans significantly impact antibody response and neutralizing antibody levels (<xref ref-type="bibr" rid="B6">Chen et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B52">Walls et&#x20;al., 2020</xref>).</p>
<p>For the investigation of the impact of glycoforms on the immunogenicity, mainly animal cell lines such as HEK and CHO cells that produce differentially glycosylated proteins are employed (<xref ref-type="bibr" rid="B28">Lin et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B41">Sch&#xf6;n et&#x20;al., 2020</xref>). However, due to need to develop specific expression protocols for each cell line, this approach is highly work-intensive. Additionally, the inherent macro- and microheterogeneity of glycoproteins complicate the elucidation of the role of specific glycans in, for instance, regarding their immunogenicity in animal models.</p>
<p>Over the past years the establishment of protocols for expression of eukaryotic and bacterial glycosyltransferases has facilitated the processing of glycans in cell-free one-pot reactions. As a platform technology, the corresponding <italic>in-vitro</italic> glycoengineering approaches have the potential to tailor the glycoform of proteins independent of the expression systems used (<xref ref-type="bibr" rid="B50">Van Landuyt et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B36">Rexer et&#x20;al., 2020a</xref>). In our study, recombinant human <italic>&#x3b2;</italic>-1,2&#x20;N-acetlyglucosamintransferases I and II (MGAT1&#x394;TM and MGAT2 &#x394;TM) and <italic>&#x3b2;</italic>-1,4-galactosyltransferase (GalT&#x394;TM) expressed in <italic>E.&#x20;coli</italic> were utilized to convert insect cell-derived paucimannose structures of recombinant SARS-CoV-2 spike glycoprotein to typical mammalian, complex-type galactosylated structures in a cell-free one-pot reaction (<xref ref-type="bibr" rid="B13">Fujiyama et&#x20;al., 2001</xref>; <xref ref-type="bibr" rid="B4">Boeggeman et&#x20;al., 2003</xref>; <xref ref-type="bibr" rid="B3">Bendiak, 2014</xref>; <xref ref-type="bibr" rid="B35">Ramakrishnan and Qasba, 2014</xref>; <xref ref-type="bibr" rid="B46">Stanley, 2014</xref>). Glycan structures were analyzed using multiplexed capillary gel electrophoresis with laser-induced fluorescence detection (xCGE-LIF) and Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). Results obtained clearly demonstrate that a large fraction of fucosylated and afucosylated, Man3-glycans were transferred to biantennary G2 and G2F structures (also <xref ref-type="table" rid="T1">Table&#x20;1</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>N-glycan categories and nomenclature for all detected and referenced structures with the exception of oligomannose-type N-glycans. The monosaccharide building blocks are mannose (green circle), GlcNAc (blue square), fucose (red triangle) and galactose (yellow circle).</p>
</caption>
<table>
<tbody valign="top">
<tr>
<td rowspan="2" align="left">
<bold>Paucimannose-type</bold>
</td>
<td align="left">Man2F</td>
<td colspan="3" align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx1.tif"/>
</td>
</tr>
<tr>
<td/>
<td align="left">Man3</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx2.tif"/>
</td>
<td align="left">Man3F</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx3.tif"/>
</td>
</tr>
<tr>
<td rowspan="2" align="left">
<bold>Hybrid-type</bold>
</td>
<td align="left">G0-Gn (3)</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx4.tif"/>
</td>
<td align="left">G0F-Gn (3)</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx5.tif"/>
</td>
</tr>
<tr>
<td/>
<td align="left">G1F-Gn (3)</td>
<td colspan="3" align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx6.tif"/>
</td>
</tr>
<tr>
<td rowspan="2" align="left">
<bold>Complex-type</bold>
</td>
<td align="left">G0</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx7.tif"/>
</td>
<td align="left">G0F</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx8.tif"/>
</td>
</tr>
<tr>
<td/>
<td align="left">G2</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx9.tif"/>
</td>
<td align="left">G2F</td>
<td align="left">
<inline-graphic xlink:href="fbioe-09-699025-fx10.tif"/>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<sec id="s2-1">
<title>Enzymes</title>
<p>SARS-CoV-2 spike protein containing the S1 subunit and the S2 subunit ectodomain was purchased from SinoBiologica (Beijing, PR China). The recombinant protein was produced using the baculovirus-insect-cell expression system using High-Five&#x2122; cells. The protein bears a C-terminal His-tag. For all other materials see supporting information&#x20;(SI).</p>
<sec id="s2-1-1">
<title>Gene Expression</title>
<p>Genes encoding for the trans-membrane deleted (&#x394;TM) variants of <italic>Homo sapiens &#x3b1;</italic>-1,3-mannosyl-glycoprotein 2-<italic>&#x3b2;</italic>-N-acetylglucosaminyltransferase (MGAT1&#x394;TM) (E.C. 2.4.1.201), <italic>&#x3b1;</italic>-1,6-mannosyl-glycoprotein 2-<italic>&#x3b2;</italic>-N-acetylglucosaminyltransferase (MGAT2&#x394;TM) (E.C. 2.4.1.143) and <italic>&#x3b2;</italic>-N-acetylglucosaminylglycopeptide <italic>&#x3b2;</italic>-1,4-galactosyltransferase (GalT&#x394;TM) (E.C. 2.4.1.38) were expressed in <italic>E.&#x20;coli</italic>. All constructs are bearing a 6 x histidine-tag (His-tag). For information on the cultivation, strains and vectors used <xref ref-type="sec" rid="s11">Supplementary Material</xref>.</p>
</sec>
<sec id="s2-1-2">
<title>Purification by Ion Metal Affinity Chromatography</title>
<p>
<italic>E.&#x20;coli</italic> cells were lysed at 4&#xb0;C by high-pressure cell disruption (3 cycles, 400&#x2013;600&#xa0;bar) using an HPL6 homogenizer (Maximator GmbH, Nordhausen, Germany) followed by centrifugation at 7,200 &#xd7; g for 20&#xa0;min at 4&#xb0;C to precipitate cell debris. The overexpressed enzymes were filtered through 8&#xa0;&#xb5;m syringe filters and then purified by ion metal chromatography using an &#xc4;KTA&#x2122; start system equipped with HisTrap&#x2122; HP columns (1&#xa0;ml) (both GE Healthcare Life Sciences, Little Chalfont, United&#x20;Kingdom). A buffer exchange was carried out to remove excess imidazole using an Amicon&#xae; Ultra-15 Centrifugal Filter Unit&#x2014;3&#xa0;kDa MW cutoff (UFC900308, Darmstadt, Germany) using standard procedures. Enzymes were stored in 50% (v/v) glycerol stock solutions at -20&#xb0;C. Enzyme concentrations were determined by performing a bicinchoninic acid (BCA) assay using the Pierce&#x2122; BCA Protein Assay Kit (Thermo Fisher Scientific; Waltham, United&#x20;States).</p>
</sec>
</sec>
<sec id="s2-2">
<title>One-Pot <italic>In-Vitro</italic> Glycoengineering Reactions</title>
<p>Reactions were performed by sequential addition of enzymes in buffered (25&#xa0;mM HEPES, pH 6.5) aqueous solutions supplemented with 10&#xa0;mM MnCl<sub>2</sub> at 37&#xb0;C under shaking (550&#xa0;rpm). The initial reaction volume (1&#xa0;ml) contained 0.1&#xa0;&#x3bc;g/ml of SARS-CoV-2 spike protein, 4&#xa0;mM UDP-GlcNAc and 0.2&#xa0;&#x3bc;g/&#x3bc;L MGAT1&#x394;TM. After a reaction time of 12&#xa0;h, 150&#xa0;&#xb5;L of a buffered solution containing 4&#xa0;mM UDP-GlcNAc and 0.85&#xa0;&#x3bc;g/&#x3bc;L MGAT2&#x394;TM was added to 500&#xa0;&#xb5;L of the reaction. After 12 more hours, 175&#xa0;&#xb5;L of a buffered solution containing 4&#xa0;mM UDP-galactose and 0.56&#xa0;&#x3bc;g/&#x3bc;L GalT&#x394;TM was added to 325&#xa0;&#xb5;L of the reaction mix. Three aliquots of the reactions were taken for N-glycan analysis by xCGE-LIF before the addition of each enzyme and at the end of the reaction (12&#xa0;h after GalT&#x394;TM addition).</p>
<sec id="s2-2-1">
<title>Sample Pre-treatment: PNGase F Digest of N-Glycosylated Proteins</title>
<p>Samples from <italic>in-vitro</italic> glycoengineering reactions were vacuum evaporated. At least 1&#xa0;&#x3bc;g <italic>N</italic>-glycosylated protein sample was linearized and denatured by adding 2&#xa0;&#xb5;L 2% (w/v) SDS in PBS buffer (pH 7.2) and subsequent heating at 60&#xb0;C for 10&#xa0;min. Samples were cooled down to room temperature. 4&#xa0;&#xb5;L 8% (w/v) IGEPAL in PBS and 1&#xa0;&#xb5;L of a 1&#xa0;U/&#xb5;L PNGase F solution were added. Samples were incubated for 1&#xa0;h at 37&#xb0;C, vacuum evaporated and dissolved in 20&#xa0;&#xb5;L LC-MS grade&#x20;H<sub>2</sub>O.</p>
</sec>
<sec id="s2-2-2">
<title>Multiplexed Capillary Gel Electrophoresis With Laser-Induced Fluorescence Detection Based N-Glycan Analysis</title>
<p>
<italic>N</italic>-glycan analysis based on xCGE-LIF was conducted using a glyXboxCE&#x2122;-system (glyXera, Magdeburg, Germany) according to (<xref ref-type="bibr" rid="B21">Hennig et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B20">Hennig et&#x20;al., 2016</xref>). Briefly, 2&#xa0;&#xb5;L of each sample was used for fluorescent labelling of <italic>N</italic>-glycans with 8-aminopyrene-1,3,6-trisulfonic acid (APTS) following post derivatization clean-up by hydrophilic interaction liquid chromatography-solid phase extraction (HILIC-SPE) with the glyXprep16&#x2122; kit (glyXera). Data processing, normalization of migration times and annotation of <italic>N</italic>-glycan fingerprints were performed with glyXtool&#x2122; software (glyXera).</p>
</sec>
<sec id="s2-2-3">
<title>Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry Based N-Glycan Analysis</title>
<p>MALDI-TOF-MS analysis of released <italic>N</italic>-glycans was performed as described previously (<xref ref-type="bibr" rid="B43">Selman et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B11">Fisch&#xf6;der et&#x20;al., 2019</xref>). Briefly, 0.9&#xa0;cm cotton rope was used for Cotton HILIC SPE. The stationary phase was equilibrated with 50&#xa0;&#xb5;L LC-MS grade H<sub>2</sub>O followed by 50&#xa0;&#xb5;L 85% ACN<sub>aq</sub>. 10&#xa0;&#xb5;L of released <italic>N</italic>-glycans were adjusted to 70&#xa0;&#xb5;L 85% ACN<sub>aq</sub> with 1% TFA and loaded onto the HILIC phase. Following two washing steps with 50&#xa0;&#xb5;L 85% ACN<sub>aq</sub> with 1% TFA and 50&#xa0;&#xb5;L 85% ACN<sub>aq</sub>, the samples were eluted in 70&#xa0;&#xb5;L LC-MS grade H<sub>2</sub>O, vacuum evaporated and dissolved in 20&#xa0;&#xb5;L LC-MS grade H<sub>2</sub>O. For the MALDI-TOF-MS analysis 0.5&#xa0;&#xb5;L super-dihydroxybenzoic acid (S-DHB) (&#x2265;99.0%, Sigma-Aldrich, Steinheim, Germany) matrix (10&#xa0;mg/ml) in 30% (v/v) ACN<sub>aq</sub>, 0.1% (v/v) TFA, 2&#xa0;mM NaCl was spotted onto a MTP AnchorChip 800/384 TF MALDI target (Bruker Daltonics, Bremen, Germany). Subsequently 1&#xa0;&#xb5;L sample was applied onto the dried matrix layer. Measurements were carried out on an ultrafleXtreme MALDI-TOF/TOF MS (Bruker Daltonics, Bremen, Germany) in reflectron positive ion mode. Data was processed with the top-hat filter and the adjacent-averaging algorithm using flexAnalysis version 3.3 Build 80 (Bruker Daltonics, Bremen, Germany).</p>
</sec>
</sec>
<sec id="s2-3">
<title>N-Glycan Nomenclature</title>
<p>
<italic>N</italic>-Glycan nomenclature was adopted from <xref ref-type="bibr" rid="B47">Stanley et&#x20;al. (2015)</xref>. Depiction of <italic>N</italic>-glycan structures followed the Symbol Nomenclature for Glycans (SNFG) guidelines (<xref ref-type="bibr" rid="B30">Neelamegham et&#x20;al., 2019</xref>). The <italic>N</italic>-glycan sketches in this manuscript were produced using the &#x201c;Glycan Builder2&#x201d; software tool (<xref ref-type="bibr" rid="B49">Tsuchiya et&#x20;al., 2017</xref>). <italic>N</italic>-Glycans are typically categorized into paucimannose-, oligomannose-, hybrid- and complex-type structures.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>Pathway Design</title>
<p>The human <italic>in-vivo</italic> cascade reaction for the generation of complex-type <italic>N</italic>-glycans from the conserved ER-derived oligomannose-type <italic>N</italic>-glycan precursor GlcNAc<sub>2</sub>Man<sub>9</sub>Glc<sub>3</sub>, was in part re-modelled <italic>in-vitro</italic> to generate fully galactosylated complex-type <italic>N</italic>-glycans starting from insect cell-derived paucimannose-type <italic>N</italic>-glycans. Central to the construction of the simplified <italic>in-vitro</italic> cascade is the ability of human MGAT1 to utilize Man3 and Man3F as substrates, which allows circumventing the application of recombinant mannosidases (<xref ref-type="fig" rid="F1">Figure&#x20;1</xref>). For the production of the G2 structure from paucimannose-type <italic>N</italic>-glycans, the three recombinant glycosyltransferases MGAT1&#x394;TM, MGAT2&#x394;TM and GalT&#x394;TM were successfully produced in <italic>E.&#x20;coli</italic> (<xref ref-type="sec" rid="s11">Supplementary Material</xref>). Enzyme concentrations of typically 1.3&#xa0;mg/ml after ion metal affinity chromatography (IMAC) and buffer exchange were obtained. In scouting experiments, it was confirmed that all enzymes are active in the buffered solutions (pH 6.5) with MnCl<sub>2</sub> supplemented as a co-factor (data not shown).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> <italic>In-vivo</italic> the oligomannose-type <italic>N</italic>-glycan Man5 is converted into complex-type <italic>N</italic>-glycans by mannosidases and MGAT1, MGAT2 and GalT. Substrates for these reactions are UDP-GlcNAc and UDP-galactose, respectively. <bold>(B)</bold> This process can be remodelled <italic>in-vitro</italic> to synthesize complex-type structures on insect cell-derived recombinant proteins with paucimannose-type N-glycans, like Man3.</p>
</caption>
<graphic xlink:href="fbioe-09-699025-g001.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>Glycoform of the Unprocessed Recombinant SARS-CoV-2 Spike Glycoprotein</title>
<p>Analytical characterization of the unprocessed and glycoengineered SARS-CoV 2 spike protein was achieved by the two orthogonal methods xCGE-LIF and MALDI-TOF-MS (<xref ref-type="fig" rid="F2">Figure&#x20;2</xref> and <xref ref-type="fig" rid="F3">Figure&#x20;3</xref>). The high-resolution <italic>N</italic>-glycan fingerprints (migration time aligned and and peak height normalized electropherograms) from xCGE-LIF combined with the precise mass profiles generated by MALDI-TOF-MS allowed for fast and robust annotation also of isomeric <italic>N</italic>-glycan structures. Furthermore, normalization of <italic>N</italic>-glycan fingerprints to total peak height enabled relative quantification of individual <italic>N</italic>-glycan structures by xCGE-LIF. The glycans released by PNGase F from the insect-cell-produced recombinant SARS-CoV-2 spike glycoprotein are mainly <italic>&#x3b1;</italic>-1,6-core-fucosylated Man3F and G0F-Gn (3) structures (<xref ref-type="fig" rid="F2">Figure&#x20;2A</xref> blue and <xref ref-type="fig" rid="F3">Figure&#x20;3A</xref>). Moreover, Man2F, Man3, the hybrid-type structure G0-Gn (3), the complex-type structure G0F, and afucosylated oligomannose-type structures were detected. There is excellent agreement between xCGE-LIF and MALDI-TOF-MS measurements.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>xCGE-LIF <italic>N</italic>-glycan fingerprints of unprocessed and <italic>in-vitro</italic> glycoengineered SARS-CoV-2 spike protein <italic>N</italic>-glycans. <italic>N</italic>-glycosylation pattern of the spike protein: <bold>(A)</bold> unprocessed (blue) and 12&#xa0;h after start of the reaction with MGAT1&#x394;TM (red); <bold>(B)</bold> 12&#xa0;h after start of the reaction with MGAT1&#x394;TM (blue) and 12&#xa0;h after the addition of MGAT2&#x394;TM (red); <bold>(C)</bold> 12&#xa0;h after the addition of MGAT2&#x394;TM (blue) and 12&#xa0;h after addition of GalT&#x394;TM (red). TPH, total peak height.</p>
</caption>
<graphic xlink:href="fbioe-09-699025-g002.tif"/>
</fig>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>MALDI-TOF mass spectra of the unprocessed and glycoengineered SARS-CoV-2 spike protein glycoforms. <italic>N</italic>-glycans were detected in reflectron positive ion mode as sodium adducts [(M &#x2b; Na)&#x2b;]. <bold>(A)</bold> Unprocessed spike protein. <bold>(B)</bold> 12&#xa0;h after start of the reaction with MGAT1&#x394;TM. <bold>(C)</bold> 12&#xa0;h after the addition of MGAT2&#x394;TM. <bold>(D)</bold> 12&#xa0;h after the addition of GalT&#x394;TM. Only the peaks that depict <italic>N</italic>-glycans are annotated.</p>
</caption>
<graphic xlink:href="fbioe-09-699025-g003.tif"/>
</fig>
</sec>
<sec id="s3-3">
<title>
<italic>In-vitro</italic> Glycoengineering of SARS-CoV-2 Spike Glycoprotein</title>
<p>Recombinant MGAT1&#x394;TM, MGAT2&#x394;TM and GalT&#x394;TM were used in a one-pot glycoengineering reaction to convert the paucimannose structures to complex-type <italic>N</italic>-glycans. In scouting experiments it was found that after MGAT1&#x394;TM, MGAT2&#x394;TM and GalT&#x394;TM addition at the start of the reaction, Man3F was converted to, at least in parts, to the hybrid-type structure G1F-Gn (3) missing the extension on the <italic>&#x3b1;</italic>1-6 mannosylated antenna catalysed by MGAT2. G1F-Gn (3) is not a natural substrate for MGAT2 and can, if at all, most likely only be processed at very low turnover rates. Thus, the reactions were carried out by adding the enzymes sequentially as detailed in M&#x26;M. In the first step, a GlcNAc residue is added from UDP-GlcNAc to the <italic>&#x3b1;</italic>-1,3-linked terminal mannose antenna of Man3F and Man3 by MGAT1&#x394;TM (<xref ref-type="fig" rid="F2">Figure&#x20;2A</xref> and <xref ref-type="fig" rid="F3">Figures 3A,B</xref>). After a reaction time of 12&#xa0;h 24.7% of Man3 and 32% Man3F were converted to G0-Gn (3) and G0F-Gn (3), respectively. Scouting experiment showed that the conversion is typically irreversible and, thus, the incomplete processing is either due to low turnover or possible enzyme inactivation of MGAT1&#x394;TM. Another possibility is that the glycans are inaccessible for MGAT1&#x394;TM but can be released from the backbone by PNGase F. In the second step, UDP-GlcNAc and MGAT2&#x394;TM are added. After incubation for 12&#xa0;h, the hybrid-type structures G0-Gn (3) and G0F-Gn (3) were converted to G0 and G0F with conversion rates of 100 and 85.2%, respectively (<xref ref-type="fig" rid="F2">Figure&#x20;2B</xref> and <xref ref-type="fig" rid="F3">Figure&#x20;3C</xref>). MGAT2&#x394;TM did not show any activity towards Man3 and Man3F. However, as mentioned before, this could be due the inaccessibility of these glycans. In the final step, the reaction was supplemented with UDP-galactose and GalT&#x394;TM to add galactose to the terminal GlcNAc. At the end point of the reaction a conversion rate of 100% was achieved. The N-glycan fingerprint was now dominated by the galactosylated complex-type structure G2 along unprocessed Man3F (see <xref ref-type="fig" rid="F2">Figure&#x20;2C</xref> and <xref ref-type="fig" rid="F3">Figure&#x20;3D</xref>). Moreover, G0 was completely converted to G2 while the residual amount of the hybrid-type structure G0F-Gn (3) was also galactosylated to G1F-Gn (3). All oligomannose-type structures remained unaltered throughout the reaction. In general, the xCGE-LIF and the MALDI-TOF-MS data were in excellent agreement for all measurements.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Due to its scalability, eukaryotic protein processing and high productivity, the baculovirus-insect cell expression system is well-suited for the production of subunit vaccines (<xref ref-type="bibr" rid="B10">Felberbaum, 2015</xref>; <xref ref-type="bibr" rid="B32">Palomares et&#x20;al., 2018</xref>). In addition to subunit vaccines against SARS-CoV-2 infections in development, there are currently three licensed vaccines, Flublok&#xae;, Cervarix&#xae; and Provenge&#xae; produced using this expression system with several more in clinical trials (<xref ref-type="bibr" rid="B10">Felberbaum, 2015</xref>; <xref ref-type="bibr" rid="B32">Palomares et&#x20;al., 2018</xref>).</p>
<p>High immunogenicity of a recombinant insect-cell produced spike protein ectodomain variant, very similar to the one used here, has been confirmed in non-human primates [40]. Moreover, the spike protein is the antigen target of virtually all COVID-19 vaccines and advanced vaccine candidates (<xref ref-type="bibr" rid="B24">Krammer, 2020</xref>). At the time of writing this article, there was one licensed COVID-19 protein subunit vaccine (RBD-Dimer from Anhui Zhifei Longcom Biopharmaceutical, China) in China, while for two more candidates (Covovax from Novavax, United&#x20;States; VAT00002 from Sanofi Pasteur and GSK, France/United&#x20;Kingdom) emergency authorization was pending in the US and Europe (<xref ref-type="bibr" rid="B58">Yang et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B8">Dai and Gao, 2021</xref>; <xref ref-type="bibr" rid="B44">Shrotri et&#x20;al., 2021</xref>). All three are recombinant SARS-CoV-2 spike protein variants produced using the baculovirus-insect cell expression system (<xref ref-type="bibr" rid="B25">Kyriakidis et&#x20;al., 2021</xref>).</p>
<p>Glycoforms of recombinant proteins produced using baculovirus-insect cell expression systems are profoundly different from those produced using mammalian expression systems. An extensive review on the glycosylation processing of insect cells is given by <xref ref-type="bibr" rid="B15">Geisler et&#x20;al. (2015)</xref>. Typically, these proteins display mainly paucimannose and hybrid-type <italic>N</italic>-glycans with, at most, minor fractions of complex-type and oligomannose-type <italic>N</italic>-glycan (<xref ref-type="bibr" rid="B15">Geisler et&#x20;al., 2015</xref>). Moreover, in comparison to <italic>Spodoptera frugiperda</italic> Sf9 cells, High Five&#xae; <italic>Trichoplusia ni</italic> cells can also produce core <italic>&#x3b1;</italic>-1,3-fucose-linked glycans (<xref ref-type="bibr" rid="B32">Palomares et&#x20;al., 2018</xref>). The presence of the latter on biologics may cause hypersensitivity reactions when applied to patients with allergy and, thus, should be avoided, for instance by cell line engineering (<xref ref-type="bibr" rid="B31">Palmberger et&#x20;al., 2014</xref>). According to the manufacturer&#x2019;s information the recombinant SARS-CoV-2 spike protein used here was produced in the High Five&#xae; cell line. However, we excluded core <italic>&#x3b1;</italic>-1,3-fucose-linked glycans from the examination by using PNGase F that does not release this type of glycans from the protein backbone (<xref ref-type="bibr" rid="B48">Tretter et&#x20;al., 1991</xref>).</p>
<p>For vaccine development, it has been proposed that immunogen candidates benefit from closely mimicking the macro- and microheterogeneity of the live virus glycosylation (<xref ref-type="bibr" rid="B18">Grant et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B55">Watanabe et&#x20;al., 2020</xref>). This is as eliciting antibodies against shielded or non-native epitopes could cause an inefficient immune response. To overcome such obstacles, novel strategies utilizing distinct non-human glycans containing N-glycolylneuraminic acid or <italic>&#x3b1;</italic>,1-3 linked galactose residues, have been proposed to alleviate immune responses (<xref ref-type="bibr" rid="B22">H&#xfc;tter et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B14">Galili, 2020</xref>; <xref ref-type="bibr" rid="B41">Sch&#xf6;n et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B5">Chen, 2021</xref>). However, such approaches still need to be investigated in detail experimentally as, for example, both compounds are also suspected to cause allergenic reactions in humans.</p>
<p>To convert the glycoform from primarily paucimannose-type to typical mammalian complex-type <italic>N</italic>-glycans, the recombinant human glycosyltransferases, MGAT1&#x394;TM, MGAT2&#x394;TM and GalT&#x394;TM, were effectively combined in a cell-free, one-pot glycosylation reaction. The gene expression of these glycosyltransferases in <italic>E.&#x20;coli</italic> and the activity of the His-tag purified, soluble recombinant proteins in one-pot reactions using free glycans as substrates has been shown before (<xref ref-type="bibr" rid="B13">Fujiyama et&#x20;al., 2001</xref>).</p>
<p>The site-specific glycan analysis of recombinant SARS-CoV-2 spike protein ectodomain expressed in human-derived cell line FreeStyle&#x2122; 293-F showed that of the 22&#x20;<italic>N</italic>-glycosylation sites only eight contained substantial fractions of oligomannose-type <italic>N</italic>-glycans (<xref ref-type="bibr" rid="B55">Watanabe et&#x20;al., 2020</xref>). It is assumed that the occurrence of oligomannose-type fractions is caused by the steric inaccessibility of these glycans to the glycan processing enzymes in the Golgi, i.e.,&#x20;the occurrence of oligomannose-type <italic>N</italic>-glycans at distinct sites has shown to be independent of the producer cell line for the HIV viral glycoprotein gp120 (<xref ref-type="bibr" rid="B34">Pritchard et&#x20;al., 2015</xref>). In accordance with the human cell-derived spike protein, our engineered spike protein abundantly exhibited complex-type G2F <italic>N</italic>-glycans. To a minor extend, a range of hybrid- and oligomannose-type <italic>N</italic>-glycans were also detected on the engineered spike protein. In contrast to the engineered spike protein, human cell-derived spike proteins also exhibit complex-type multi-antennary and sialylated structures (<xref ref-type="bibr" rid="B55">Watanabe et&#x20;al., 2020</xref>). Taken together, a significant overlap of the glycoform has been generated. Whether the overlap is also site-specific remains to be investigated in future.</p>
<p>Over the past years, many efforts have been made to engineer insect cell lines to express complex-type <italic>N</italic>-glycans. A comprehensive summary of the attempts is given by <xref ref-type="bibr" rid="B32">Palomares et&#x20;al. (2018)</xref>. Briefly, complex-type <italic>N</italic>-glycans can be produced by the co-expression of glycosyltransferases or by generating transient insect cell lines. While the former generates an additional metabolic burden and affects growth properties, the stability of the latter has not been examined for commercial scale use. The advantage of <italic>in-vitro</italic> glycoengineering lies in its independence of producer cell lines as well as its flexibility towards the option to readily generate different glycoforms that are close to homogeneity. However, expensive nucleotides sugars are required as substrates and, thus, it is so far not feasible to apply <italic>in-vitro</italic> glycoengineering at larger scales (<xref ref-type="bibr" rid="B29">Mahour et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B37">Rexer et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B38">Rexer et&#x20;al., 2020b</xref>).</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>Conclusion</title>
<p>SARS-CoV-2 spike glycoprotein variants produced in a baculovirus-insect cell expression system were <italic>in-vitro</italic> glycoengineered using recombinant glycosyltransferases to mimic the glycoform observed on the human cell-derived protein. <italic>In-vitro</italic> glycoengineering reactions as conducted here, can be used to generate immunogen candidates for pre-clinical testing to investigate the role of glycosylation on the antigenicity and immunogenicity in animal models. In general, <italic>in-vitro</italic> glycoengineering approaches can virtually be used to tailor the glycoform of all prominent vaccine candidates such as activated and attenuated viruses and virus like particles. The application of the technology to larger scales depends on the bulk availability of sugar nucleotides at moderate&#x20;costs.</p>
</sec>
</body>
<back>
<sec id="s6">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s7">
<title>Author Contributions</title>
<p>JR, VG conducted the experiments and wrote experimental sections; TR conceived the study and wrote the manuscript; MJ-O, DB, RM, ER, UR contributed with intellectual input to the study and edited the manuscript. All authors contributed to manuscript revision, read, and approved the submitted version.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>The project is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)&#x2014;Projektnummer 458633485. DB acknowledges funding from the State of Saxony-Anhalt (F&#xf6;rderkennzeichen I 130). ER und VG acknowledge funding by DFG- FOR2509: RA2992/1-1.</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>ER and UR hold shares in glyXera&#x20;GmbH.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fbioe.2021.699025/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fbioe.2021.699025/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet1.pdf" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<sec id="s12">
<title>Abbreviations</title>
<p>APTS, 8-Aminopyrene-1,3,6-trisulfonic acid; dH<sub>2</sub>O, Deionized water; GlcNAc, <italic>N</italic>-acetylglucosamine; HEPES, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid; HILIC, Hydrophilic interaction liquid chromatography; His tag, Histidine tag; IMAC, Immobilized metal affinity chromatography; IPTG, Isopropyl &#x3b2;-D-1-thiogalactopyranoside; LC, Liquid chromatography; MALDI-TOF, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry; MS, Mass spectrometry; MnCl<sub>2</sub>, Mangan(II)-chlorid; MTU, Migration Time Units after alignment to internal standards; rpm, Rounds per min; SDS-PAGE, Sodium dodecyl sulfate polyacrylamide gel electrophoresis; SPE, Solid phase extraction; TPH, Total peak height; UDP-galactose, Uridine-diphosphate galactose; UDP-GlcNAc, Uridine diphosphate <italic>N</italic>-acetylglucosamine; xCGE-LIF, Multiplexed capillary gel electrophoresis with laser-induced fluorescence detection.</p>
</sec>
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