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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell. Infect. Microbiol.</journal-id>
<journal-title>Frontiers in Cellular and Infection Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell. Infect. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">2235-2988</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fcimb.2022.909731</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cellular and Infection Microbiology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>What Is New in the Anti&#x2013;<italic>Pseudomonas aeruginosa</italic> Clinical Development Pipeline Since the 2017 WHO Alert?</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Reig</surname><given-names>S&#xe9;bastien</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/1748465"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Le Gouellec</surname><given-names>Audrey</given-names>
</name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref> <uri xlink:href="https://loop.frontiersin.org/people/999781"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bleves</surname><given-names>Sophie</given-names>
</name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/246437"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Laboratoire d&#x2019;Ing&#xe9;nierie des Syst&#xe8;mes Macromol&#xe9;culaires (LISM), Institut de Microbiologie, Bio&#xe9;nergies et Biotechnologie (IM2B), Aix-Marseille Universit&#xe9;-CNRS, UMR7255</institution>, <addr-line>Marseille</addr-line>, <country>France</country></aff>
<aff id="aff2"><sup>2</sup><institution>Laboratoire Techniques de l&#x2019;Ing&#xe9;nierie M&#xe9;dicale et de la Complexit&#xe9; (UMR5525), Centre National de la Recherche Scientifique, Universit&#xe9; Grenoble Alpes, VetAgro Sup, Grenoble INP, CHU Grenoble Alpes</institution>, <addr-line>Grenoble</addr-line>, <country>France</country></aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Philippe Huber, Commissariat &#xe0; l&#x2019;Energie Atomique et aux Energies Alternatives (CEA), France</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Rafael Coria Jimenez, National Institute of Pediatrics (Mexico), Mexico; Roberto Rosales-Reyes, National Autonomous University of Mexico, Mexico</p>
</fn>
<fn fn-type="corresp" id="fn001"><p>*Correspondence: S&#xe9;bastien Reig, <email xlink:href="mailto:sreig@imm.cnrs.fr">sreig@imm.cnrs.fr</email>; Sophie Bleves, <email xlink:href="mailto:bleves@imm.cnrs.fr">bleves@imm.cnrs.fr</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Molecular Bacterial Pathogenesis, a section of the journal Frontiers in Cellular and Infection Microbiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>08</day>
<month>07</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>12</volume>
<elocation-id>909731</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>03</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>05</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Reig, Le Gouellec and Bleves</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Reig, Le Gouellec and Bleves</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The spread of antibiotic-resistant bacteria poses a substantial threat to morbidity and mortality worldwide. Carbapenem-resistant <italic>Pseudomonas aeruginosa</italic> (CRPA) are considered &#x201c;critical-priority&#x201d; bacteria by the World Health Organization (WHO) since 2017 taking into account criteria such as patient mortality, global burden disease, and worldwide trend of multi-drug resistance (MDR). Indeed <italic>P. aeruginosa</italic> can be particularly difficult to eliminate from patients due to its combinatory antibiotic resistance, multifactorial virulence, and ability to over-adapt in a dynamic way. Research is active, but the course to a validated efficacy of a new treatment is still long and uncertain. What is new in the anti&#x2013;<italic>P. aeruginosa</italic> clinical development pipeline since the 2017 WHO alert? This review focuses on new solutions for <italic>P. aeruginosa</italic> infections that are in active clinical development, i.e., currently being tested in humans and may be approved for patients in the coming years. Among 18 drugs of interest in December 2021 anti&#x2013;<italic>P. aeruginosa</italic> development pipeline described here, only one new combination of &#x3b2;-lactam/&#x3b2;-lactamase inhibitor is in phase III trial. Derivatives of existing antibiotics considered as &#x201c;traditional agents&#x201d; are over-represented. Diverse &#x201c;non-traditional agents&#x201d; including bacteriophages, iron mimetic/chelator, and anti-virulence factors are significantly represented but unfortunately still in early clinical stages. Despite decade of efforts, there is no vaccine currently in clinical development to prevent <italic>P. aeruginosa</italic> infections. Studying pipeline anti&#x2013;<italic>P. aeruginosa</italic> since 2017 up to now shows how to provide a new treatment for patients can be a difficult task. Given the process duration, the clinical pipeline remains unsatisfactory leading best case to the approval of new antibacterial drugs that treat CRPA in several years. Beyond investment needed to build a robust pipeline, the Community needs to reinvent medicine with new strategies of development to avoid the disaster. Among &#x201c;non-traditional agents&#x201d;, anti-virulence strategy may have the potential through novel and non-killing modes of action to reduce the selective pressure responsible of MDR.</p>
</abstract>
<kwd-group>
<kwd><italic>Pseudomonas aeruginosa</italic>
</kwd>
<kwd>multi-drug resistance</kwd>
<kwd>development pipeline</kwd>
<kwd>vaccine</kwd>
<kwd><italic>immunotherapy</italic>
</kwd>
<kwd>antibiotics</kwd>
<kwd>phage therapy</kwd>
<kwd>anti-virulence strategy</kwd>
</kwd-group>
<contract-num rid="cn001">ANR-21-CE11-0028-01, ANR-15-IDEX-02</contract-num>
<contract-sponsor id="cn001">Agence Nationale de la Recherche<named-content content-type="fundref-id">10.13039/501100001665</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">Association Vaincre la Mucoviscidose<named-content content-type="fundref-id">10.13039/501100006342</named-content>
</contract-sponsor>
<counts>
<fig-count count="5"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="105"/>
<page-count count="16"/>
<word-count count="8329"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>As a worldwide public health threat, the World Health Organization (WHO) established a list of antibiotic-resistant bacteria in 2017 (<xref ref-type="bibr" rid="B85">Tacconelli et&#xa0;al., 2018</xref>). The aim was to prioritize and stimulate research and development strategies of new active drugs. Among relevant criteria such as patient mortality prevalence, health-care burden, and trend of resistance worldwide, carbapenem-resistant <italic>Pseudomonas aeruginosa</italic> (CRPA) were considered &#x201c;critical-priority&#x201d; bacteria (<xref ref-type="bibr" rid="B85">Tacconelli et&#xa0;al., 2018</xref>). Indeed, Carbapenem antibiotics are reserved for the treatment of multi-drug resistant (MDR) bacterial infections, and, when bacteria develop resistance to them, treatment options become extremely limited.</p>
<p><italic>P. aeruginosa</italic> is an opportunistic pathogen responsible for both severe acute and chronic infections, and is a significant cause of healthcare-associated infections, particularly in critically ill and immunocompromised patients (<xref ref-type="fig" rid="f1"><bold>Figure&#xa0;1</bold></xref>). Since its first description in wound infections (<xref ref-type="bibr" rid="B36">Gessard, 1882</xref>), <italic>P. aeruginosa</italic> is now a well-known pathogen. Pathogenesis of <italic>P. aeruginosa</italic> is mediated by an arsenal of virulence factors: motility, adherence to biotic and abiotic surfaces, secreted toxins also called effectors that are released in the environment or injected into host cells or other bacteria (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>). These effectors are able to modulate or disrupt host cells signaling pathways, target extracellular matrix, induce tissue damage, and shape the local microbiome by competition (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>). The ability of <italic>P. aeruginosa</italic> to form a biofilm&#xa0;is also a key factor that increases drug resistance and escape from host defense and is responsible for colony tolerance to disinfectants on medical devices (<xref ref-type="bibr" rid="B62">Mulcahy et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B65">Pang et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B43">Jurado-Mart&#xed;n et&#xa0;al., 2021</xref>). As all these factors contribute to pathogenicity by complementary actions, <italic>P. aeruginosa</italic> is characterized by a combinatorial multifactorial virulence. Moreover, multiple mechanisms of antibiotic resistance have been identified, including intrinsic membrane permeability, drug efflux systems, production of antibiotic-inactivating enzymes, and loss of porin function (<xref ref-type="bibr" rid="B65">Pang et&#xa0;al., 2019</xref>). Finally, the plasticity of its (i) virulence factor gene expression, (ii) antibiotic resistance, and (iii) metabolism in response to selective pressure is one of the most challenging features of <italic>P. aeruginosa</italic> allowing the transition from acute to chronic infections. Acute infections are mainly associated with planktonic life style, whereas biofilm plays a major role in persistent infections. This remarkable ability of over-adaptation in a dynamic way allows this pathogen to escape immune system and become MDR or extensively drug resistant (XDR). Once a chronic infection in the patient is established, <italic>P. aeruginosa</italic> is really difficult to treat.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Clinical manifestations of <italic>P. aeruginosa</italic> infections. Representation of human body site infections and main clinical manifestations of <italic>P. aeruginosa.</italic> Healthcare-associated infections highlighted in blue illustrate the significant burden of <italic>P. aeruginosa</italic> on invasive acts, surgery, and device use, resulting in local or systemic complications (<xref ref-type="bibr" rid="B101">Wu et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B18">Dando et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B35">Gahlot et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B24">Elborn, 2016</xref>; <xref ref-type="bibr" rid="B22">Durand, 2017</xref>; <xref ref-type="bibr" rid="B63">Newman et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B5">Arsovic et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B69">Ramireddy et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B14">Chai and Xu, 2020</xref>; <xref ref-type="bibr" rid="B81">Shukla et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B41">Jean et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B59">Montravers et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B13">Cerioli et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B80">Shrestha et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B98">Vieira et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B39">Hauser and Ozer, 2011</xref>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-12-909731-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Key virulence factors of <italic>P. aeruginosa. S</italic>chematic representation of cell-associated and extracellular relevant virulence factors and their main roles on <italic>P. aeruginosa</italic> pathogenesis. OMPs, outer membrane proteins; LPS, lipopolysaccharide; ROS, reactive oxygen species; EPS, exopolysaccharides; eDNA, extracellular desoxyribonucleic acid; T4P, type 4 pili; TnSS, type n secretion system; ETA, exotoxin A; PVD, pyoverdine; PCH, pyochelin; PCN, pyocyanin; PG, peptidoglycan; ECM, extracellular matrix (<xref ref-type="bibr" rid="B2">Alhazmi, 2015</xref>; <xref ref-type="bibr" rid="B76">Sana et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B8">Berni et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B43">Jurado-Mart&#xed;n et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B64">Nolan et&#xa0;al., 2021</xref>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-12-909731-g002.tif"/>
</fig>
<p>To meet this major treatment issue, research is active with a variety of approaches ranging from disarming the pathogen with an anti-virulence strategy to eliminating it. In parallel with the growing knowledge of the molecular mechanisms of <italic>P. aeruginosa</italic>&#x2013;host interaction, the number of potential therapeutic targets is increasing. However, the path to validate efficacy of a new drug in human is long and uncertain. Two antibacterial tracks of development are followed and consist in &#x201c;traditional agents&#x201d; (small molecule directly targeting the bacterium for a bacteriostatic or bactericidal action) and new therapeutics called &#x201c;non-traditional&#x201d; (large molecule and/or not acting by directly targeting bacterial components essential for bacterial growth). Characterized by new, non-bactericidal, and generally species-specific modes of action, the paradigm is that non-traditional agents are less likely to generate the dreaded resistance (<xref ref-type="bibr" rid="B93">Tse et&#xa0;al., 2017</xref>). Indeed a non-killing agent reduces the selective pressure, and its specificity avoids cross-resistance potentially induced by horizontal genes transfer (<xref ref-type="bibr" rid="B93">Tse et&#xa0;al., 2017</xref>). This review focuses on new solutions for <italic>P. aeruginosa</italic> infections that are in active clinical development, i.e., currently being tested in humans and may be approved for patients in the coming years. A literature search was performed in a context of need to address clearly the question: What is new in the anti&#x2013;<italic>P. aeruginosa</italic> clinical development pipeline since the 2017 WHO alert?</p>
</sec>
<sec id="s2">
<title>Rationale of This Review and Methodology of Data Search</title>
<p>With more than 74,000 articles published in PubMed<sup>&#xae;</sup> in December 2021, knowledge about <italic>P. aeruginosa</italic> is growing in the fields of its virulence, antibiotic resistance, lifestyle, metabolism, clinical manifestations, clinical or observational studies, health and economic burden, among others. Numerous articles or reviews detail the potential new targets from basic research, the emerging new candidate therapies in early phase, or the pipeline of antibacterial molecules in preclinical and clinical testing and the hope that comes with it (<xref ref-type="bibr" rid="B12">Burrows, 2018</xref>; <xref ref-type="bibr" rid="B94">T&#xfc;mmler, 2019</xref>; <xref ref-type="bibr" rid="B99">WHO, 2020</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B100">WHO, 2021</xref>; <xref ref-type="bibr" rid="B103">Yaeger et&#xa0;al., 2021</xref>). It is difficult to find one&#x2019;s way through all this data, which is often mixed and rarely dedicated to <italic>P. aeruginosa</italic>. It is important to keep in mind that before proof of concept in a phase II study, no efficacy is proven in patients. Efficacy&#x2013;safety balance evaluation in <italic>P. aeruginosa&#x2013;</italic>infected patients is an unavoidable milestone. To dedicate this review only to anti&#x2013;<italic>P. aeruginosa</italic> treatments in clinical development, a literature search was conducted with a specific strategy in the PubMed<sup>&#xae;</sup> database between January 2017 and December 2021. The following criteria were used: (i) keywords related to development (antibacterial pipeline, antibiotic pipeline, and clinical development) and treatment (drug, antibiotic, and therapy), (ii) selection of phase I to III clinical trials, and (iii) exclusion of research data or preclinical targets (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3</bold></xref>). Clinical trial registries and websites of companies or organizations with a special interest in the field were consulted to verify or supplement the data (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;3).</bold></xref>
</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Review focus, data search criteria, and strategy.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-12-909731-g003.tif"/>
</fig>
</sec>
<sec id="s3">
<title>Vaccines: A Prophylactic Strategy for High-Risk Patients</title>
<p>A vaccine against <italic>P. aeruginosa</italic> for at-risk patients [i.e., those older than 65 years and those with cystic fibrosis (CF), bronchiectasis, or chronic obstructive pulmonary disease] could reduce the prevalence of infections, the overall burden disease, and the use of antibiotic treatment. Therefore, although formal data are lacking, the vaccine, by limiting the use of antibiotics and thus reducing selection pressure on pathogens, has a significant indirect impact on the emergence of antibiotic resistance (<xref ref-type="bibr" rid="B52">L&#xf3;pez-Siles et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B58">Micoli et&#xa0;al., 2021</xref>). An important challenge for obtaining a good vaccine is the identification of ideal antigens, i.e., antigens accessible or presented to the immune system, adequately immunogenic and highly conserved across all serotypes (<xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>), regardless of the stage or location of the infection. Antigen variability, plasticity of virulence factor expression during acute to chronic infection described earlier in the introduction, and bacterial localization (the mucosal immune response is compromised in dehydrated and sticky mucus in lungs of CF patients) are a challenge. In addition, it is also necessary to find a safe but immunogenic vector and antigen formulation (with or without adjuvant), allowing mucosal vaccination, intracellular and extracellular delivery of antigens to achieve specific cellular and humoral immunity, as well as long-term immunity. Finally, the choice of the target pathology is also very important: bacteremia, chronic lung infection, keratitis, urinary tract, or skin infection for the clinical trial.</p>
<p>Despite active research for a <italic>P. aeruginosa</italic> vaccine during over half a century, no vaccine has yet been approved (<xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B52">L&#xf3;pez-Siles et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B58">Micoli et&#xa0;al., 2021</xref>). Several antigens [lipopolysaccharide (LPS), alginate, flagellum, type 4 pili, outer membrane proteins (OMPs), type 3 secretion systems T3SS, T2SS effectors, autoinducers, and iron-uptake proteins] have been targeted in clinical development, but to date, only three vaccines reached the phase III trials (<xref ref-type="bibr" rid="B70">Rello et&#xa0;al., 2017</xref>). The investigational vaccine IC43, a recombinant OMPs (OprF porin/OprI lipoprotein)&#x2013;based vaccine, appeared to be the last promising based on the favorable safety and immunogenicity profile from phase II study (<xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>).</p>
<sec id="s3_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>Results from a phase II/III, multicenter, randomized, placebo-controlled, and double-blinded confirmatory study of IC43&#xa0;vaccine against <italic>P. aeruginosa</italic> were published in 2020 (<xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>). A total of 799 patients requiring mechanical ventilation received the vaccine at the time of admission to the intensive care unit (ICU). Although the study confirmed the safety profile and immunogenicity, the primary endpoint was not meet with the IC43 vaccine, providing no clinical benefit over placebo in terms of overall mortality (29.2% versus 27.7% in the IC43 and placebo groups, respectively, at day 28; p = 0.67) (<xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>). The authors suggest that prevention of <italic>P. aeruginosa</italic> infection with a vaccine at the time of ICU admission may be too late. Indeed, in general, the humoral immune response is obtained about 2 to 3 weeks after the primary injection of the vaccine, which does not allow time to obtain a significant effect. Moreover, efficacy of the humoral response could be affected in some bacterial infections that are not systemic. An impact on mortality is also very difficult to demonstrate in critically ill patients, so another primary endpoint such as <italic>P. aeruginosa</italic>&#x2013;related events would have been a better option. Nevertheless, this study demonstrated the feasibility of vaccinating a large cohort of ventilated patients in ICU and inducing a specific immune response (<xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>).</p>
<p>On the basis of the literature search (<xref ref-type="bibr" rid="B70">Rello et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B57">Merakou et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B9">Bianconi et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>), consultation of the clinical trials registry (<uri xlink:href="https://clinicaltrials.gov/ct2/results?cond=Pseudomonas+Aeruginosa&amp;term=Vaccination&amp;type=&amp;rslt=&amp;recrs=b&amp;recrs=a&amp;recrs=f&amp;recrs=d&amp;age_v=&amp;gndr=&amp;intr=&amp;titles=&amp;outc=&amp;spons=&amp;lead=&amp;id=&amp;cntry=&amp;state=&amp;city=&amp;dist=&amp;locn=&amp;rsub=&amp;strd_s=01%2F01%2F2017&amp;strd_e=12%2F31%2F2021&amp;prcd_s=&amp;prcd_e=&amp;sfpd_s=&amp;sfpd_e=&amp;rfpd_s=&amp;rfpd_e=&amp;lupd_s=&amp;lupd_e=&amp;sort=">ClinicalTrials.gov, 2021</uri>), and probably due to the recommendation published in the Cochrane Database of Systematic Reviews (<xref ref-type="bibr" rid="B42">Johansen and G&#xf8;tzsche, 2015</xref>), no vaccine is currently in clinical development (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4A</bold></xref>). An effective vaccine should be able to induce an humoral immune response capable of both mediating opsonophagocytic killing by phagocytic cells and neutralizing <italic>P. aeruginosa</italic> virulence factors (<xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>). Advances have been made in understanding the interaction between <italic>P. aeruginosa</italic> and its host, and the key role of Th1 and Th17 host immune responses is well established and a cellular immune response mediated by Th17 cells (<xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>). A deeper understanding of these mechanisms at each potential site and stage of infection would facilitate future vaccine development. A novel approach such as reverse vaccinology combined with genomic technologies has recently been described in <italic>P. aeruginosa</italic>, identifying potentially surface-exposed immunogenic proteins relevant in pathogenesis (<xref ref-type="bibr" rid="B9">Bianconi et&#xa0;al., 2019</xref>). The use of outer membrane vesicles, because it carries many surface antigens that can serve as targets, also represents a promising approach for vaccine development (<xref ref-type="bibr" rid="B4">Antonelli et&#xa0;al., 2021</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Search results: anti-Pseudomonas aeruginosa clinical development pipeline in December 2021. <bold>(A)</bold> Vaccines and antibodies. MoA, mode of action; IM, intramuscular; IV, intravenous; Ig; immunoglobulin; mAb, monoclonal antibody; pAb, polyclonal antibody; eDNA, extracellular desoxyribonucleic acid. <bold>(B)</bold> Polymixins and new antibiotics (new MoA). MoA, mode of action; IV, intravenous; PG, peptidoglycan; LPS, lipopolysaccharide. <bold>(C)</bold> New combinations of &#x3b2;-lactam/&#x3b2;-lactamase inhibitor. MoA, mode of action; IV, intravenous; PG, peptidoglycan. <bold>(D)</bold> Phages and Iron metabolism disruption. MoA, mode of action; IV, intravenous. <bold>(E)</bold> Anti-biofilm and other anti-virulence factors. MoA, mode of action; IV, intravenous; T3SS, type 3 secretion system.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-12-909731-g004.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<title>Antibodies: An Immediate Passive Immunization to Treat or Prevent Infection</title>
<p>The vaccination (or active immunotherapy) strategy has various limitations, particularly for immunocompromised patients who may not be able to induce an appropriate immune response. Moreover, the immediate need for protection may not be met, including the time required for the development of an adequate immune response after vaccination, as discussed above (<xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>). The uncommon mucus produced in the CF lung can also be a barrier to the systemic and specific immune response against <italic>P. aeruginosa</italic> that colonize the lower airways. Nevertheless, antibodies represent an effective and specific line of defense of the immune system. Passive immunotherapy with antibacterial monoclonal antibodies (mAbs) is therefore an alternative therapy against <italic>P. aeruginosa</italic> that could be interesting in certain clinical situations. Indeed, mAbs target specific surface antigens that are not usually the targets of antibiotics and are thus active against MDR bacteria. Antibacterial strategies are developed by mAbs binding to bacterial surface antigens, inducing opsonophagocytic killing by the host immune system or by binding to a virulence factor, such as toxin and thus neutralizing it (<xref ref-type="bibr" rid="B45">Lakemeyer et&#xa0;al., 2018</xref>). To date, no mAbs against <italic>P. aeruginosa</italic> have been approved.</p>
<p>Among the latest anti&#x2013;<italic>P. aeruginosa</italic> mAbs, AR101 and AR105 have been developed as adjuvant strategy to antibiotics. Whereas AR101 targets the LPS serotype O11 surface O-antigen, AR105 targets alginate, a polysaccharide required for biofilm formation (<xref ref-type="bibr" rid="B105">Zurawski and McLendon, 2020</xref>; <xref ref-type="bibr" rid="B54">Lu et&#xa0;al., 2011</xref>). A phase IIa trial evaluating AR101 was completed in 2009 for hospital acquired pneumonia, showing promising results in clinical cure and survival rates (<uri xlink:href="https://www.clinicaltrials.gov/ct2/show/NCT00851435?term=NCT00851435&amp;draw=2&amp;rank=1">NCT00851435</uri>). A phase II trial testing the efficacy, safety, and pharmacokinetic of AR105 in addition to standard-of-care (SOC) antibiotics for pneumonia cause by <italic>P. aeruginosa</italic> was started in 2017 (<uri xlink:href="https://www.clinicaltrials.gov/ct2/show/NCT03027609?term=NCT03027609&amp;draw=2&amp;rank=1">NCT03027609</uri>). MEDI3902, a bispecific mAb, is able to recognize two different targets of <italic>P. aeruginosa</italic>, each containing a distinct epitope: the T3SS needle-tip protein PcrV, involved in host cell cytotoxicity and the surface exopolysaccharide Psl, involved in epithelial attachment and biofilm formation (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>; <xref ref-type="bibr" rid="B73">Sato et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B73">Ryder et&#xa0;al., 2007</xref>).&#xa0;Designated as a Fast Track drug from Food and Drug Administration (FDA), MEDI3902 is under development for the prevention of healthcare-acquired <italic>P. aeruginosa</italic> pneumonia in high-risk patients<xref ref-type="fn" rid="fn1"><sup>1</sup></xref>
. PsAer-IgY (egg yolk immunoglobulin), an avian polyclonal anti&#x2013;<italic>P. aeruginosa</italic> antibody, has entered in a phase III trial to test its efficacy in preventing recurrence of <italic>P. aeruginosa</italic> infection in patients with CF (<xref ref-type="bibr" rid="B91">Thomsen et&#xa0;al., 2016</xref>).</p>
<sec id="s4_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>Currently, in clinical development in China, the future of AR101 is unclear. Being specific to just one set of <italic>P. aeruginosa</italic> strains, AR101 mAbs may have limited value in contrast to MEDI3902 directed against independent and highly conserved target serotypes among clinical isolates (<xref ref-type="bibr" rid="B84">Tabor et&#xa0;al., 2018</xref>). In 2019, the developers reported that AR105 was unable to demonstrate superiority over SOC for clinical cure of <italic>P. aeruginosa</italic> pneumonia in phase II triala<xref ref-type="fn" rid="fn2"><sup>2</sup></xref>
; no further development resources were allocated to AR105. In 2018, several years after the completion of the phase II study in patients with CF infected with <italic>P. aeruginosa</italic>, results of KB001A were finally published (<xref ref-type="bibr" rid="B96">VanDevanter and Chmiel, 2018</xref>). KB001A is a monospecific PEGylated anti-PcrV mAb. Because no statistical difference was observed in time to antibiotic use compared to placebo, the primary endpoint was unfortunately not met. According to the authors, the low levels of T3SS secretion activity of <italic>P. aeruginosa</italic> isolates from patients with CF may be an explanation for the lack of efficacy observed with KB001A in this study (<xref ref-type="bibr" rid="B96">VanDevanter and Chmiel, 2018</xref>).</p>
<p>Early use in healthier patients may be effective in reducing the inflammatory effect responsible for lung disease progression (<xref ref-type="bibr" rid="B96">VanDevanter and Chmiel, 2018</xref>). Published in 2019, results from the phase I study of MEDI3902 in healthy subjects (<xref ref-type="bibr" rid="B3">Ali et&#xa0;al., 2019</xref>) supported further evaluation in phase II proof-of-concept study in mechanically ventilated ICU patients at high risk for <italic>P. aeruginosa</italic> pneumonia. Even when bispecific, MEDI3902 did not achieve the primary efficacy endpoint of reducing <italic>P. aeruginosa</italic> pneumonia (<xref ref-type="bibr" rid="B15">Chastre et&#xa0;al., 2020</xref>). Nevertheless, positive exploratory results were observed in subjects with lower levels of baseline inflammatory biomarkers, a subpopulation that could be tested to benefit from MEDI3902 (<xref ref-type="bibr" rid="B15">Chastre et&#xa0;al., 2020</xref>). Although PsAer-IgY was safe in the population studied, efficacy could not be demonstrated with the trial design used, as stated in the final report (<xref ref-type="bibr" rid="B29">EU Clinical Trials Register, 2018</xref>). The time to first recurrence of <italic>P. aeruginosa</italic> in patient sputum was not significantly different between active treatment and placebo. One explanation for this result could be that the non-specific IgY used as a comparator is also effective in postponing infection but in a non-specific way (<xref ref-type="bibr" rid="B29">EU Clinical Trials Register, 2018</xref>). The low efficacy could also be due to use antibodies from another specie in humans responsible of neutralizing anti-IgY antibodies production. TRL1068, a human mAb targeting DNA binding protein II (DNABII) is a promising new agent in clinical development (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;4A</bold></xref>). By stabilizing extracellular DNA, DNABII is a key structural component of biofilm (<xref ref-type="bibr" rid="B89">Thi et&#xa0;al., 2020</xref>). Currently being tested in a phase I trial for prosthetic joint infection, TRL1068 is expected to eliminate the pathogen-protecting biofilm, making them more susceptible to antibiotic treatment (<uri xlink:href="https://www.clinicaltrials.gov/ct2/show/NCT04763759?term=TRL1068&amp;draw=2&amp;rank=1">NCT04763759</uri>). The targeted epitope is highly conserved making the antibody potentially effective against biofilm produced by a wide range of clinically relevant pathogens, including 10 of the 12 WHO priority pathogens<xref ref-type="fn" rid="fn3"><sup>3</sup></xref>
. Nevertheless, this efficacy could be low with early isolates that does not produce biofilm or are lower producers.</p>
</sec>
</sec>
<sec id="s5">
<title>Polymyxin Derivatives: A New &#x201c;Old&#x201d; Class of Antibiotics</title>
<p>Almost 60 years after their clinical approval, polymyxins remain a class of antibiotic available for many MDR Gram-negative bacteria but used as last-line therapeutic option due to their potential human nephro-and neurotoxicity (<xref ref-type="bibr" rid="B49">Li et&#xa0;al., 2019</xref>). Polymyxins are small cyclic cationic lipopeptides, interacting with the anionic lipid A component of LPS, in the outer membrane of Gram-negative bacteria, leading to cytoplasmic membrane disruption and bacterial cytotoxicity (<xref ref-type="bibr" rid="B49">Li et&#xa0;al., 2019</xref>). Their clinical use has restarted in recent years with polymyxin B and polymyxin E (colistin). On the basis of structure&#x2013;activity&#x2013;toxicity relationships, many efforts have been made to modify the original polymyxins and improve their safety profile. SPR741 is a polymyxin B derivative with less nephrotoxicity. SPR741 has no direct antibacterial activity but potentiates the efficacy of co-administered antibiotics (<xref ref-type="bibr" rid="B33">French et&#xa0;al., 2020</xref>), which alone would not have access to their intracellular targets (<xref ref-type="bibr" rid="B16">Corbett et&#xa0;al., 2017</xref>). SPR741 completed a phase I clinical trial in 2017 (<xref ref-type="bibr" rid="B23">Eckburg et&#xa0;al., 2019</xref>).</p>
<sec id="s5_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>SPR741, combined with three different wide spectrum &#x3b2;-lactam antibiotics (ceftazidime, piperacillin/tazobactam, and aztreonam), showed favorable tolerability and PK profiles in a phase Ib study (<xref ref-type="bibr" rid="B23">Eckburg et&#xa0;al., 2019</xref>). The most effective combinations of such a &#x201c;potentiator&#x201d; strategy are not known yet, especially in non-healthy patient (<xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>). The clinical programs for SPR741 have been halted by the developers in 2020 before phase II in favor of the potentially more promising SPR206 molecule (WHO, 2021). This kind of strategic choice is also a reality of clinical development, explaining the dynamic change in the pipeline of molecules. SPR206 is another polymyxin B derivative, designed for use alone, and has shown antibiotic activity&#xa0;against MDR Gram-negative pathogens and XDR bacterial strains, including CRPA, in preclinical studies. It has thus a potential broad-spectrum of activity (<xref ref-type="bibr" rid="B10">Brown et&#xa0;al., 2019</xref>). Data from a phase I clinical trial were recently published with no evidence of nephrotoxicity and supporting further development of SPR206 (<xref ref-type="bibr" rid="B11">Bruss et&#xa0;al., 2021</xref>). Two additional phase I trials (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4B</bold></xref>) were also completed in December 2021:&#xa0;a bronchoalveolar lavage clinical trial assessing SPR206 penetration into the lungs, and a renal failure study. How polymyxin resistance and cross-&#x200b;resistance to other classes might develop over time is not known. The benefit of SPR206 on polymyxin-&#x200b;resistant strains must be demonstrated and lower toxicity must be shown in patients (<xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>). Nevertheless, the FDA has granted SPR206 Qualified Infectious Disease Product designation for the treatment of complicated urinary tract infections (cUTIs), hospital-acquired pneumonia (HAP), and ventilator-associated pneumonia (VAP) (<xref ref-type="bibr" rid="B11">Bruss et&#xa0;al., 2021</xref>), making this drug eligible for fast-track evaluation. MRX8, another polymyxin B derivative, started its clinical development on November 2020 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04649541?term=NCT04649541&amp;draw=2&amp;rank=1">NCT04649541</uri>). MRX-8 was developed using a &#x201c;soft drug design&#x201d;, which represents a new approach to designing safer drugs by integrating metabolism and detoxification factors into the drug design process (<xref ref-type="bibr" rid="B48">Lepak et&#xa0;al., 2020</xref>).</p>
</sec>
</sec>
<sec id="s6">
<title>Antibiotics With a New Mode of Action for MDR Gram-Negative Bacteria</title>
<p>Among bacterial targets, peptidoglycan (PG) synthesis remains a privileged target with investigations on molecules of the &#x3b2;-lactams family. One field of development focuses on the modification active &#x3b2;-lactams by addition of an iron-chelating molecule, facilitating transport into bacteria (<xref ref-type="bibr" rid="B19">De Carvalho and Fernandes, 2014</xref>). Cefiderocol, a first in class of siderophore-cephalosporins, is able to bind to extracellular free iron, allowing active transport into the periplasmic space of Gram-negative bacteria through siderophore uptake systems. Cefiderocol subsequently binds to penicillin-binding proteins (PBPs), inhibiting bacterial PG cell wall synthesis that leads to cell lysis and death (<xref ref-type="bibr" rid="B26">EMA, 2020a</xref>). Although siderophore antibiotics have been investigated for several decades, none of them progressed to clinical development because of poor correlation between <italic>in vitro</italic> activity and <italic>in vivo</italic> efficacy or because of toxicity (<xref ref-type="bibr" rid="B25">El-Lababidi and Rizk, 2020</xref>). Promising assessment of cefiderocol for the treatment of cUTI in patients at risk of MDR Gram-negative infections started in phase II trial in 2015 (<xref ref-type="bibr" rid="B67">Portsmouth et&#xa0;al., 2018</xref>).</p>
<p>LPS that constitutes the OM outer layer at the surface of Gram-negative bacteria represents also an attractive target against pathogens (<xref ref-type="bibr" rid="B55">MacNair et&#xa0;al., 2020</xref>). By binding to the LPS transport protein D (LptD), the small cyclic peptide murepavadin causes a specific <italic>P. aeruginosa</italic> LPS biogenesis alteration (<xref ref-type="bibr" rid="B56">Martin-Loeches et&#xa0;al., 2018</xref>). A second phase II study of murepavadin co-administered with SOC in VAP due to <italic>P. aeruginosa</italic> finished in 2017 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT02096328?term=NCT02096328&amp;draw=2&amp;rank=1">NCT02096328</uri>).</p>
<sec id="s6_1">
<title>But What Is New in the Development Pipeline Since the 2017 WHO Alert?</title>
<p>In 2018, phase II results of cefiderocol versus imipenem-cilastatin, an available therapy for the treatment of cUTI were published. Response rates for the composite endpoint of microbiological eradication and clinical response were significantly higher in the cefiderocol arm compared with imipenem-cilastatin arm establishing the non-inferiority of cefiderocol (<xref ref-type="bibr" rid="B67">Portsmouth et&#xa0;al., 2018</xref>). The safety profile of cefiderocol in this study was good. On the basis of these results, cefiderocol was given priority review and was the first siderophore-antibiotic approved by the FDA in 2019<xref ref-type="fn" rid="fn4"><sup>4</sup></xref>
, providing a new option of treatment of cUTI including pyelonephritis in patient with limited or no alternative treatment (<xref ref-type="bibr" rid="B30">FDA, 2019</xref>). Evaluated as non-inferior to meropenem for the primary endpoint of all-cause mortality in a phase III trial, cefiderocol has obtained an expanded indication for HAP and VAP (<xref ref-type="bibr" rid="B31">FDA, 2020</xref>; <xref ref-type="bibr" rid="B102">Wunderink et&#xa0;al., 2021</xref>). However, an increase in all-cause mortality death and infection-related death with treatment failure was observed in patients treated with cefiderocol compared with best available therapy in a descriptive phase III trial in critically ill patients with Gram-negative CR bacterial infections (<xref ref-type="bibr" rid="B7">Bassetti et&#xa0;al., 2021</xref>). The cause of the increase in mortality has not been established but close monitoring of the clinical response to therapy in patients with cUTI and HAP/VAP was asking by FDA (<xref ref-type="bibr" rid="B31">FDA, 2020</xref>). In 2020, the Committee for Medicinal Products for Human Use (CHMP) adopted a positive opinion, recommending the granting of a marketing authorization in Europe. The overall non-clinical and clinical data support the ability of cefiderocol to address an unmet need. The balance of benefits and risks is considered positive (<xref ref-type="bibr" rid="B27">EMA, 2020b</xref>).</p>
<p>Murepavadin fulfilled innovation criteria (<xref ref-type="bibr" rid="B100">WHO, 2020</xref>), including the main criteria for absence of known cross-resistance (<xref ref-type="bibr" rid="B12">Burrows, 2018</xref>), and reached phase III trials in HAP/VAP caused by <italic>P. aeruginosa</italic> (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03582007?term=NCT03582007&amp;draw=2&amp;rank=1">NCT03582007</uri> and <uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03409679?term=NCT03409679&amp;draw=2&amp;rank=1">NCT03409679</uri>). Unfortunately, murepavadin was prematurely withdrawn from the authorization race on July 2019 due to high incidence of kidney injury<xref ref-type="fn" rid="fn5"><sup>5</sup></xref>
, another hard reality of clinical development that can be interrupted even in late phase due to imbalance of benefit/risk ratio for patients. An alternative mode of administration of murepavadin, such as inhalation, is being explored to improve nephrotoxicity. A new phase I has been announced to start in 2022<xref ref-type="fn" rid="fn6"><sup>6</sup></xref>
. In 2019, RC01, another new antibiotic targeting LPS biogenesis, entered in clinical development (<xref ref-type="fig" rid="f3"><bold>Figure&#xa0;4B</bold></xref>). RC01 inhibits the bacterial enzyme LpxC, a key protein involved in the production of LPS lipid A. Despite demonstrated efficacy in clinical isolates of <italic>P. aeruginosa</italic> from patients with CF and good safety in preclinical phases, the phase I prematurely stopped for safety concerns (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03832517?term=NCT03832517&amp;draw=2&amp;rank=1">NCT03832517</uri>). As illustrated by the two previous antibiotics with new modes of action, murepavadin and RC01, novel targets or chemicals represent an unpredictable toxicity risk, as the transposition of safety signals from preclinical models to human is uncertain (<xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>).</p>
</sec>
</sec>
<sec id="s7">
<title>New Combinations of &#x3b2;-LACTAM/ &#x3b2;-LACTAMASE INHIBITOR A Strategy to Get Around Resistance</title>
<p>Among antibiotics, &#x3b2;-lactam targets specifically the PG biosynthesis through covalent binding/interaction to PBPs, the enzyme involved in late stages of PG synthesis. However, bacteria under selection pressure could produce &#x3b2;-lactamases, enzymes who hydrolyzed the &#x3b2;-Lactam ring. Hydrolyzing &#x3b2;-lactam antibiotics has made many of them ineffective becoming a major resistance issue in Gram-negative bacteria (<xref ref-type="bibr" rid="B94">T&#xfc;mmler, 2019</xref>). Consequently, a synergic combination of &#x3b2;-lactam and an appropriate &#x3b2;-lactamase inhibitor (BLI) restoring &#x3b2;-lactam activity is a frequently used strategy. The well-known combination amoxicillin (&#x3b2;-lactam)/clavulanic acid (BLI) is a good example as it represents one of the most prescribed antibiotic worldwide and is a WHO-designed &#x201c;core access antibiotic&#x201d; that should be consistently available (<xref ref-type="bibr" rid="B78">Sharland et&#xa0;al., 2018</xref>).</p>
<p>Relebactam is a new BLI with activity against a broad range of &#x3b2;-lactamase enzymes including carbapenemases (<xref ref-type="bibr" rid="B83">Smith et&#xa0;al., 2020</xref>). <italic>In vitro</italic> addition of relebactam to imipenem restored imipenem activity against several imipenem-resistant bacteria, including <italic>P. aeruginosa</italic> (<xref ref-type="bibr" rid="B83">Smith et&#xa0;al., 2020</xref>). Relebactam in association with imipenem-cilastatin demonstrated efficacy in phase II trials dedicated to cUTIs (<xref ref-type="bibr" rid="B82">Sims et&#xa0;al., 2017</xref>) and complicated intraabdominal infections (cIAIs) (<xref ref-type="bibr" rid="B53">Lucasti et&#xa0;al., 2016</xref>), thus entered in phase III trial in HAP/VAP (<xref ref-type="bibr" rid="B92">Titov et&#xa0;al., 2020</xref>) versus piperacillin-tazobactam&#x2013; and imipenem-resistant pathogens versus colistin (<xref ref-type="bibr" rid="B61">Motsch et&#xa0;al., 2020</xref>), a polymixin used as last resort therapy. Taniborbactam is a highly potent pan-spectrum new BLI that inhibits all classes of &#x3b2;-lactamase enzymes (<xref ref-type="bibr" rid="B50">Liu et&#xa0;al., 2020</xref>). In combination with the fourth-generation cephalosporin cefepime, taniborbactam positively completed the phase I milestone in 2017 and thus supported other trials (<xref ref-type="bibr" rid="B21">Dowell et&#xa0;al., 2020</xref>).</p>
<sec id="s7_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>Evaluation of phases II/III clinical data (<xref ref-type="bibr" rid="B53">Lucasti et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B82">Sims et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B61">Motsch et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B92">Titov et&#xa0;al., 2020</xref>) demonstrates that the relebactam/imipenem-cilastatin association is well tolerated and effective in the treatment of cUTIs, cIAIs, and HAP/VAP and obtained FDA approval for these therapeutic indications<xref ref-type="fn" rid="fn7"><sup>7</sup></xref>
<sup>,</sup>
<xref ref-type="fn" rid="fn8"><sup>8</sup></xref>
. Taniborbactam/cefepime association demonstrated&#xa0;<italic>in vitro</italic> rescue of cefepime activity by taniborbactam against clinical isolates of CRPA (<xref ref-type="bibr" rid="B38">Hamrick et&#xa0;al., 2020</xref>). As the FDA designated Fast Track, the association&#xa0;skipped phase II and is currently on phase III trial to access the safety and efficacy compared with meropenem in both eradication of bacteria and in symptomatic response as primary endpoint in patients with cUTIs including acute pyelonephritis (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03840148?term=taniborbactam&amp;draw=2&amp;rank=2">NCT03840148</uri>). Another phase III trial in patients with HAP/VAP is&#xa0;scheduled to begin in 2022<xref ref-type="fn" rid="fn9"><sup>9</sup></xref>
. At least four other new BLIs in association with &#x3b2;-lactam are on phase I stage (completed or ongoing) (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4C</bold></xref>): nacubactam, zidebactam, QPX7728, and XNW4107. Whereas nacubactam reported narrow <italic>in vitro</italic> activity in <italic>P. aeruginosa</italic> (<xref ref-type="bibr" rid="B6">Asempa et&#xa0;al., 2020</xref>), QPX7728 is an ultra-broad-spectrum &#x3b2;-lactamase inhibitor with the broadest spectrum of inhibition <italic>in vitro</italic> reported to date in a single BLI molecule (<xref ref-type="bibr" rid="B51">Lomovskaya et al., 2021</xref>). Zidebactam in association with cefepime should start a phase III in cUTI or acute pyelonephritis end of 2021 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04979806?term=Zidebactam&amp;draw=2&amp;rank=2">NCT04979806</uri>). Despite this antibiotic-based strategy, other mechanisms can unfortunately confer resistance to &#x3b2;-lactam/BLI new combinations. Beyond &#x3b2;-lactamases production, overproduction or extended-spectrum &#x3b2;-lactamases, <italic>P. aeruginosa</italic> has developed efficient mechanisms as decreased permeability of the outer membrane and overproduction of efflux pumps (<xref ref-type="bibr" rid="B60">Moradali et&#xa0;al., 2017</xref>).</p>
</sec>
</sec>
<sec id="s8">
<title>Phage Therapy: Using a Bacteria Natural Killer</title>
<p>Bacteriophages that infect and lyse their target bacteria are being reconsidered as  an alternative therapy to treat MDR bacterial infections. Interestingly, some phages are also able to disrupt biofilm barrier with EPS-depolymerase activity (<xref ref-type="bibr" rid="B17">Cornelissen et&#xa0;al., 2012</xref>). Phage therapy includes mono-phage, phages-cocktail, phage-derived enzyme (lysin), bio-engineered phage, and phage combined with antibiotics (<xref ref-type="bibr" rid="B66">Patil et&#xa0;al., 2021</xref>). Systematic literature search shows a large number of case study reports and compassionate use for severe patients in specialized centers but despite promising results recent clinical trial evidence-based will be necessary. The first randomized controlled trial using a cocktail of natural lytic <italic>P. aeruginosa</italic> phages for the topical treatment of infected burn wound patients was stopped on January 2017 because of PP1131 insufficient efficacy versus SOC (<xref ref-type="bibr" rid="B40">Jault et&#xa0;al., 2019</xref>).</p>
<sec id="s8_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>In 2019, full results of the phase I/II trial testing PP1131 were published. This study had several limitations and encountered many unexpected difficulties. An ancillary analysis showed that the bacteria isolated from patients with failed PP1131 treatment were resistant to low phage doses (<xref ref-type="bibr" rid="B40">Jault et&#xa0;al., 2019</xref>). Phage cocktails of predefined composition could negatively interfere in the relations between phage and bacterium by selecting phage resistance in the bacterial populations that vary among patients (<xref ref-type="bibr" rid="B94">T&#xfc;mmler, 2019</xref>). An individually approach could be a more effective using phagograms to study <italic>in vitro</italic> the sensitivity of <italic>P. aeruginosa</italic> to bacteriophages  in the manner of antibiograms, and a phage collection for personalized treatment (<xref ref-type="bibr" rid="B34">Friman et&#xa0;al., 2016</xref>).</p>
<p>APPA02<xref ref-type="fn" rid="fn10"><sup>10</sup></xref>
, a new inhaled cocktail of complementary phages, is currently tested for safety and tolerability in a phase I/II trial to treat serious respiratory infections, with an initial emphasis on patients with CF (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04596319?term=NCT04596319&amp;draw=2&amp;rank=1">NCT04596319</uri>). <italic>P. aeruginosa</italic> recovery in sputum following multiple doses of treatment will be also explored. In March 2021, a phase I/II trial was initiated for assessment of another targeted inhaled phage therapy YPT01<xref ref-type="fn" rid="fn11"><sup>11</sup></xref>
 added to standard antimicrobial therapy&#xa0;in the treatment of chronic&#xa0;<italic>P. aeruginosa&#xa0;</italic>infections in CF (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04684641?term=NCT04684641&amp;draw=2&amp;rank=1">NCT04684641</uri>). A multispecies targeting topic phage cocktail TP102<xref ref-type="fn" rid="fn12"><sup>12</sup></xref>
 was formulated against <italic>P. aeruginosa</italic> but also <italic>Staphylococcus aureus&#xa0;</italic>and <italic>Acinetobacter baumannii</italic>. TP102 started a safety evaluation in subjects with both non-infected and infected diabetic foot ulcers as the primary endpoint and targeted bacteria clearance as secondary endpoint (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04803708?term=NCT04803708&amp;draw=2&amp;rank=1">NCT04803708</uri>). Results of these three early phase studies for APPA02, YPT01, and TP102 assessment are expected in 2022. BX004-A, a nebulized bacteriophage therapy, entered in a phase Ia/IIb (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4D</bold></xref>). Exploratory objectives include whether this treatment reduces sputum <italic>P. aeruginosa</italic> bacterial load in CF subjects with chronic <italic>P. aeruginosa</italic> pulmonary infection (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT05010577?term=BX004&amp;draw=2&amp;rank=1">NCT05010577</uri>). During the same time, other new topical phage therapies by spray as an adjunct to SOC therapy for the prevention and treatment of <italic>P. aeruginosa</italic>, <italic>S. aureus</italic>, or <italic>Klebsiella pneumoniae</italic> infections will enter in development in pressure ulcers (PL03BM, <uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04815798?term=NCT04815798&amp;draw=2&amp;rank=1">NCT04815798</uri>) and burns (PGX0100, <uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT04323475?term=NCT04323475&amp;draw=2&amp;rank=1">NCT04323475</uri>). Despite promising results, both historically and recently, the efficacy of phage therapy has still not been sufficiently examined and documented in high-quality clinical trial in humans to answer the questions raised about how to best use bacteriophages (<xref ref-type="bibr" rid="B47">Leitner et&#xa0;al., 2021</xref>).</p>
</sec>
</sec>
<sec id="s9">
<title>Depriving Bacteria From a Survival Essential Element: Iron</title>
<p>As an essential nutrient for growth and biofilm establishment, <italic>P. aeruginosa</italic> has developed different strategies to acquire iron from its environment (haem or siderophores mediated uptake systems and porins) (<xref ref-type="bibr" rid="B104">Zhang et&#xa0;al., 2021</xref>). Host fights infection reducing iron biodisponibility for its invading bacteria using, for example, transferrin in serum and lactoferrin in mucosal secretion (<xref ref-type="bibr" rid="B104">Zhang et&#xa0;al., 2021</xref>). Acting as an iron mimetic, gallium disrupts multiple iron-dependent synthetic and metabolic pathways (<xref ref-type="bibr" rid="B32">Frei, 2020</xref>). Preliminary clinical study raised the possibility that gallium may be a safe and effective treatment for human infections (<xref ref-type="bibr" rid="B37">Goss et&#xa0;al., 2018</xref>). A phase II study to test IV gallium nitrate to control &#xa0;<italic>P.</italic>&#xa0;<italic>aeruginosa </italic>&#xa0;infections in adults with CF started in 2016 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT02354859">NCT02354859</uri>). Because the IV form of gallium involves a continuous 5-day infusion, which is a demanding treatment regimen for patients, the AR501 inhaled formulation of gallium citrate self-administered <italic>via</italic> a nebulizer device was designed to be given once a week, allowing for direct delivery to the lungs<sup>10</sup>. Another antimicrobial with an activity on iron metabolism is ALX-009, a combination of lactoferrin and hypothiocyanite, natural major antimicrobial substances deficient in the airway secretions of patients with CF (<xref ref-type="bibr" rid="B95">Tunney et&#xa0;al., 2018</xref>). Lactoferrin deprives bacteria of iron due to its iron chelator activity and can bind to cell membranes, leading to alterations in permeability and enhancing bacterial killing by other antibiotics (<xref ref-type="bibr" rid="B71">Rogan et&#xa0;al., 2004</xref>). Hypothiocyanite is a highly reactive compound that oxidizes proteins to created disulfide bonds that perturb the bacterial physiology (<xref ref-type="bibr" rid="B90">Thomas et&#xa0;al., 1978</xref>). ALX009 started a phase I in 2015 as an inhalable solution administered through nebulization (<uri xlink:href="https://clinicaltrials.gov/ct2/show/study/NCT02598999?term=NCT02598999&amp;draw=2&amp;rank=1">NCT02598999</uri>).</p>
<sec id="s9_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>The phase II clinical trial in adults with CF found no significant difference between the number of responders (defined as a participant having a 5% or greater increase in lung function by day 28) in the IV gallium nitrate and placebo group<xref ref-type="fn" rid="fn13"><sup>13</sup></xref>
. The primary endpoint was unmet, however a significantly reduction of <italic>P. aeruginosa</italic> was found in the sputum of gallium treated patients compared to the placebo group for participants who were culture positive for&#xa0;<italic>P. aeruginosa</italic>&#xa0;at baseline<xref ref-type="fn" rid="fn14"><sup>14</sup></xref>
. Overall, IV gallium nitrate was well-tolerated compared to placebo. With broad-spectrum anti-infective activity AR501 is being developed in a phase I/IIa (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4D</bold></xref>) to treat chronic bacterial lung infections of patients with CF (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03669614?term=NCT03669614&amp;draw=2&amp;rank=1">NCT03669614</uri>). On&#xa0;2020, positive safety data were reported from the phase I portion of the study, and AR-501 has been granted Fast Track, Qualified Infectious Disease Product, and Orphan Drug Designation by FDA and EMA. The originally planned protocol design was adapted into a phase IIa (dose selection/sample size determination) which results expected in 2022 will be implemented directly in a phase IIb&#xa0;study (efficacy) using the same clinical study protocol<xref ref-type="fn" rid="fn15"><sup>15</sup></xref>
. This is an encouraging example of simplified and accelerated development supported by Health Authorities in a context of urgent need. Final data collection date for primary outcome measure of ALX009 in healthy volunteers and patients suffering from CF and non-CF bronchiectasis was expected in October 2021 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/study/NCT02598999?term=NCT02598999&amp;draw=2&amp;rank=1">NCT02598999</uri>).</p>
</sec>
</sec>
<sec id="s10">
<title>Anti-Biofilm Strategy</title>
<p>Among virulence factors of <italic>P. aeruginosa</italic>, biofilms increase bacterial adherence, immune system evasion, and antibiotic tolerance by blocking the diffusion of positively charged drugs. OligoG is an alginate oligosaccharide with the potential to reduce sputum viscosity of patients with CF by chelating calcium (<xref ref-type="bibr" rid="B28">Ermund et&#xa0;al., 2017</xref>), easing clearance of mucus from patient airways, reducing microbial burden and inflammation. OligoG was also shown to disrupt biofilm structure of <italic>P. aeruginosa</italic> mucoid phenotype (<xref ref-type="bibr" rid="B68">Powell et&#xa0;al., 2018</xref>) and could in consequence improve host immune system action and the effectiveness of antimicrobial agents. To determine the safety and local tolerability of multiple dose administration of inhaled fragment in healthy volunteers, a phase I study was performed with a particular attention on pulmonary functioning and adverse events (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT00970346?term=NCT00970346&amp;draw=2&amp;rank=1">NCT00970346</uri>).</p>
<sec id="s10_1">
<title>But What Is New in the Clinical Development Pipeline Since the 2017 WHO Alert?</title>
<p>In a first phase II study in adult CF subjects with <italic>P. aeruginosa</italic> lung infection, inhalation of OligoG powder over 28 days was shown to be safe; however, statistically significant improvement of FEV<sub>1</sub>&#xa0;(forced expiratory volume by the patient in one second) was not reached (<xref ref-type="bibr" rid="B97">Van Koningsbruggen-Rietschel et al., 2020</xref>). Lung function is widely used as primary outcome measure in the development of drugs to treat CF but regarding its mode of action could not be adapted to prove an OligoG efficacy, especially when disease is already installed. <italic>Post hoc</italic>&#xa0;subgroup analyses support mechanism of action for OligoG and warrant further prospective studies (<xref ref-type="bibr" rid="B97">Van Koningsbruggen-Rietschel et&#xa0;al., 2020</xref>). OligoG has Orphan Drug designation from both the EMA and the FDA and is currently tested in other phase IIb studies in addition to SOC compared to placebo with SOC too (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03698448?term=NCT03698448&amp;draw=2&amp;rank=1">NCT03698448</uri> and NCT03822455). SNSP113 (SYGN113), a novel large polycationic glycopolymer, poly (acetyl, arginyl) glucosamine, was tested in a phase I&#xa0;study&#xa0;in healthy subjects and patients with stable CF (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03309358?term=SNSP113&amp;draw=2&amp;rank=1">NCT03309358</uri>) and is currently evaluated in a phase II study (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4E</bold></xref>). PLG0206 (WLBU2), an engineered cationic antimicrobial peptide with broad-spectrum activity and preventing <italic>in vitro P. aeruginosa</italic> biofilm growth on airway epithelial cells (<xref ref-type="bibr" rid="B46">Lashua et&#xa0;al., 2016</xref>), received Orphan Drug status for prosthetic joint infection and entered in phase 1 trial in healthy subjects in 2018. PLG0206 will enter a phase 1b for treatment of periprosthetic joint infection in 2022 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT05137314?term=NCT05137314&amp;draw=2&amp;rank=1">NCT05137314</uri>).</p>
</sec>
</sec>
<sec id="s11">
<title>Other Innovative Anti-Virulence Strategies</title>
<p>As T3SS and associated toxins are major virulence factors of <italic>P. aeruginosa</italic> (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>), innovative therapeutic strategies are developed to reduce the infection severity. Despite many hopes based on <italic>in vitro</italic> or preclinical activities, only one treatment targeting T3SS is currently in clinical development (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4E</bold></xref>). Ftortiazinon, a small molecule with a strong potential as an antibacterial therapy (<xref ref-type="bibr" rid="B79">Sheremet et al., 2018</xref>), developed by the Gamaleya Research Institute, entered a phase 2 in combination with cefepime for the treatment of patients with cUTI caused by <italic>P. aeruginosa</italic> in 2018 (<uri xlink:href="https://clinicaltrials.gov/ct2/show/NCT03638830?term=NCT03638830&amp;draw=2&amp;rank=1">NCT03638830</uri>).</p>
</sec>
<sec id="s12" sec-type="discussion">
<title>Discussion</title>
<p>This review aimed at providing an up-to-date picture of therapeutics against <italic>P. aeruginosa</italic> currently in clinical development, since the 2017 WHO alert. Only one antibacterial drug with a new mode of action has been approved by FDA and EMA against <italic>P. aeruginosa</italic> (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4B</bold></xref>). Among 18 drugs of interest anti&#x2013;<italic>P. aeruginosa</italic> in the development pipeline described in this review, only one new combination of &#x3b2;-lactam/&#x3b2;-lactamase inhibitor of antibiotics is in phase III trial (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4C</bold></xref>). Derivatives of existing antibiotics considered as &#x201c;traditional agents&#x201d; are highly represented (<xref ref-type="fig" rid="f5"><bold>Figure&#xa0;5</bold></xref>). Diverse &#x201c;non-traditional agents&#x201d; including bacteriophages, iron mimetic/chelator, and anti-virulence factors are significantly represented but unfortunately still in early clinical stages. There is no vaccine in development to prevent <italic>P. aeruginosa</italic> infections despite a half century of research effort specifically focused on this challenge (<xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>; <uri xlink:href="https://clinicaltrials.gov/ct2/results?cond=Pseudomonas+Aeruginosa&amp;term=Vaccination&amp;type=&amp;rslt=&amp;recrs=b&amp;recrs=a&amp;recrs=f&amp;recrs=d&amp;age_v=&amp;gndr=&amp;intr=&amp;titles=&amp;outc=&amp;spons=&amp;lead=&amp;id=&amp;cntry=&amp;state=&amp;city=&amp;dist=&amp;locn=&amp;rsub=&amp;strd_s=01%2F01%2F2017&amp;strd_e=12%2F31%2F2021&amp;prcd_s=&amp;prcd_e=&amp;sfpd_s=&amp;sfpd_e=&amp;rfpd_s=&amp;rfpd_e=&amp;lupd_s=&amp;lupd_e=&amp;sort=">ClinicalTrials.gov., 2021</uri>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Anti&#x2013;<italic>Pseudomonas aeruginosa</italic> treatments in clinical development in December 2021.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-12-909731-g005.tif"/>
</fig>
<p>Studying pipeline anti&#x2013;<italic>P. aeruginosa</italic> since 2017 up to now shows how development of a new treatment can be a difficult process. Lack of correspondence between <italic>in vitro</italic> or preclinical study and phase II clinical response questions the choice of pertinent animal models recreating human infection conditions (<xref ref-type="bibr" rid="B87">Theuretzbacher et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>). Methodology used is often a strategic issue, with the crucial definition of the clinically significant primary outcome (<xref ref-type="bibr" rid="B57">Merakou et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>) and the infection-site that could best allow to meet efficacy criteria. The absence of statistically significative evidence is not the evidence of absence of efficacy. We can question, for example, if death is a good primary outcome when critically ill patients are entering in ICU (<xref ref-type="bibr" rid="B57">Merakou et&#xa0;al., 2018</xref>) and if lung function measure is a pertinent primary outcome for a CF patient with chronical severe disease (<xref ref-type="bibr" rid="B3">Ali et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B97">Van Koningsbruggen-Rietschel et&#xa0;al., 2020</xref>). Studying pipeline also underlines that a late clinical stage development can be interrupted due to unexpected toxicity<xref ref-type="fn" rid="fn16"><sup>16</sup></xref>
 or bankrupt of a biotechnology company. COVID-19 pandemic had also an important impact on clinical trials recruitment and timelines during the last 2 years.</p>
<p><italic>P. aeruginosa</italic>&#x2013;host interactions and host immunometabolism are not yet enough understood, complicating the development of effective therapies and vaccines (<xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>). Because of the fact that <italic>P. aeruginosa</italic> is an opportunistic bacterium, patients infected with <italic>P. aeruginosa</italic> are mostly immunocompromised individuals. This makes it difficult to develop a vaccine for these patients (<xref ref-type="bibr" rid="B103">Yaeger et&#xa0;al., 2021</xref>). As <italic>P. aeruginosa</italic> is characterized by its genomic plasticity, drugs or vaccine must be designed to target conserved elements between strains to ensure an optimal efficacy (<xref ref-type="bibr" rid="B93">Tse et&#xa0;al., 2017</xref>). This constitutes a true limitation regarding strains like PA7, a non-respiratory MDR that lacks the T3SS and its effectors or the exotoxin A (<xref ref-type="bibr" rid="B72">Roy et&#xa0;al., 2010</xref>) or the Liverpool epidemic strain, a lineage with enhanced virulence and antimicrobial resistance characteristics (<xref ref-type="bibr" rid="B75">Salunkhe et&#xa0;al., 2005</xref>).</p>
<p>Each class of treatment against <italic>P. aeruginosa</italic> presents strengths, weaknesses, opportunities, and threats that have to be taken into account in global clinical development considerations (<xref ref-type="table" rid="T1"><bold>Table 1</bold></xref>). Among &#x201c;non-traditional agents&#x201d;, a vaccine could offer a long-term sustainable approach to infection prevention because it will decrease the need for antibiotics and hence the emergence of antibioresistance (<xref ref-type="bibr" rid="B58">Micoli et&#xa0;al., 2021</xref>). Anti-virulence strategy may have the potential through novel, specialized, and non-killing modes of action to reduce the selective pressure responsible of MDR (<xref ref-type="bibr" rid="B20">Dickey et&#xa0;al., 2017</xref>) or select less virulent strains. Regarding combinatory multifactorial virulence, an anti-virulence factor used alone do not has therapeutic utility and hence must be used as pre-emptive or adjunctive treatment in combination with traditional antibiotics (<xref ref-type="bibr" rid="B20">Dickey et&#xa0;al., 2017</xref>). Despite many years of research, no anti-virulent agent has yet been introduced in clinical use against <italic>P. aeruginosa</italic>. Novel targets for anti-virulence strategy must be proposed and T6SS as a key virulence factor of <italic>P. aeruginosa</italic> (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>) could be selected. Inhibition of T6SS assembly or neutralization of its toxins (amidases, phospholipases, protease, pore forming toxin, and iron-acquisition effector) (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>) would allow to interfere at two moments of the infectious process: (i) during host colonization (competition for the niche with microbiota or other pathogens in case of CF patients) and (ii) escape from the immune system (internalization and autophagy).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Strengths and weaknesses (internal factors), opportunities and threats (external factors) of each class of treatment in clinical development against <italic>P. aeruginosa</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left" style="background-color:#d9d9d9">Type</th>
<th valign="top" align="center" style="background-color:#d9d9d9">Strengths</th>
<th valign="top" align="center" style="background-color:#d9d9d9">Weaknesses</th>
<th valign="top" align="center" style="background-color:#d9d9d9">Opportunities</th>
<th valign="top" align="center" style="background-color:#d9d9d9">Threats</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" style="background-color:#f2f2f2"><bold>Vaccines</bold>
</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Prophylactic strategy with a response in early stage of infection<break/>- Multitargeting possible/specificity<break/>- Reduced probability of resistance<break/>- Well define target population (high risks patients for opportunistic infection to improve immunity)</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Non-immediate action<break/>- Limited predictive value of animal models (immune system complexity)<break/>- Weak preclinical pipeline<break/>- No vaccine currently in clinical trial<break/>- Immunization dependent of the patient immune system status</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- COVID-19 vaccine development change of paradigm<break/>- New technologies (reverse vaccinology, adjuvants optimization, mRNA)<break/>- Spread of MDR as a reason to consider vaccination</td>
<td valign="top" rowspan="9" align="left" style="background-color:#f2f2f2">- Image of low morbidity/mortality of <italic>P. aeruginosa</italic> infection in general population<break/>- Burden of disease and incidence rate not well define in high-risk patients<break/>- Development mostly in health-care associated pneumonia<break/>- Difficulties to generate robust data to support approval (how to design clinical trial regarding complexity of infections)<break/>- Non-inferiority clinical trial (design strategy with lack of distinct benefit over existing treatment)<break/>- Non-MDR arm used in the studies design; difficulties to recruit patients with MDR<break/>- Duration of clinical trial in the current development paradigm<break/>- High-risk strategies for innovative treatment (new targets or new type of drug; high attrition rate of phase I)<break/>- Cost of diagnosis before use of drugs with narrow spectrum<break/>- Cost of biotherapies manufacturing <italic>versus</italic> traditional drugs<break/>- Strong dependence on public and/or philanthropic funding<break/>- High need of innovation not or partially covered<break/>- Lack of commercial interest in developing new antibacterial drugs (high risk development, low return on investment expected, new drugs will be used as last resort)<break/>- Low economic value of novel antibiotic <italic>versus</italic> innovative treatment of chronical diseases<break/>- Many big pharmaceuticals companies abandoned R&amp;D programs<break/>- Challenge of clinical development by biotechnologies companies</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Antibodies</bold>
</td>
<td valign="top" align="left">- Immediate protection (preventive or adjunctive therapy possible)<break/>- Immunization independent of the patient immune system status<break/>- Multitargeting possible/specificity<break/>- Anti-virulence factors strategy with probability of reduced resistance<break/>- Narrow spectrum avoiding the disruption of microbiota</td>
<td valign="top" align="left">- Mostly intravenous administration not ideal for immunocompromised patients<break/>- Large proteins<break/>- Usually narrow spectrum of activity necessitating diagnosis before to treat (specialized and costly health-care facilities)</td>
<td valign="top" align="left">- mAb technology well known in cancer or autoimmune diseases treatment<break/>- Manufacturing methods and safety profile well established<break/>- DNA mAb to overcome cost</td>
</tr>
<tr>
<td valign="top" align="left" style="background-color:#f2f2f2"><bold>Polymyxins</bold>
</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Broad-spectrum activity<break/>- Potentiate and extend the spectrum of conventional antibiotics (synergy)<break/>- Efficacy against both quiescent and growing bacteria</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Emergence of resistance<break/>- Large spectrum of activity engendering dysbiose<break/>- Possible toxicity against host<break/>- Currently last line of defense</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- No newer alternatives: the urgent need to optimize their clinical use<break/>- Substantial progress made in understanding complexity of polymyxins and &#x201c;soft drug design&#x201d;</td>
</tr>
<tr>
<td valign="top" align="left"><bold>New antibiotics</bold>
<break/><bold>(new MoA)</bold>
</td>
<td valign="top" align="left">- New mode of action less susceptible to induce resistance<break/>- Broad or narrow activity spectrum</td>
<td valign="top" align="left">- Based on low evidence, clinicians appear reluctant to use new antibiotic agents<break/>- Safety profile less known</td>
<td valign="top" align="left">- Substantial knowledge of rich ecological niches that produces antibiotics as secondary metabolite<break/>- Human microbiota research enthusiasm</td>
</tr>
<tr>
<td valign="top" align="left" style="background-color:#f2f2f2"><bold>New combinations of &#x3b2;-lactam/&#x3b2;-lactamase inhibitor</bold>
</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Synergic effect, restoring activity of &#x3b2;-lactam<break/>- Counteract &#x3b2;-lactamase defense strategy</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Resistance mechanisms beyond the production of &#x3b2;-lactamases<break/>- Broad-spectrum of antibiotic resistance/cross resistance<break/>- Short-term option</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Highly developed antibacterial &#x3b2;-lactam based clinical pipeline.</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Phages</bold>
</td>
<td valign="top" align="left">- Self amplification at infection site<break/>- Biofilm penetration (possible lysis)<break/>- Specificity of action avoiding microbiome disruption<break/>- Escape mutants could be less pathogenic due to loss of surface factors expression</td>
<td valign="top" align="left">- Lack of knowledge about phage mode of action<break/>- Strong selective pressure to develop resistance<break/>- Diagnosis necessary for personalized therapy<break/>- Immunogenicity of phage</td>
<td valign="top" align="left">- Availability for patients in Eastern Europe specialized centers<break/>- Compassionate use as clinical experience<break/>- Cost effective<break/>- Human microbiome research (including largely phagome)</td>
</tr>
<tr>
<td valign="top" align="left" style="background-color:#f2f2f2"><bold>Iron metabolism disruption</bold>
</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Activity against Gram-negative and Gram-positive (broad spectrum of activity)</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Production of high level of siderophore pyoverdine to compensate<break/>- Lack of knowledge about exact mode of action</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Untapped potential of metal-based antibiotics versus organics compounds</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Anti-biofilm</bold>
</td>
<td valign="top" align="left">- Sensibilize bacteria to antibiotic<break/>- Strategy with reduced probability of resistance<break/>- Can supplement antibiotics for increase efficacy<break/>- Specificity of action avoiding microbiota depletion</td>
<td valign="top" align="left">- Requires a combination therapy<break/>- Effective in strain infection with mucoid phenotype</td>
<td valign="top" align="left">- Substantial knowledge of virulence mechanisms of pathogen bacteria<break/>- Biofilm well recognized as a threat in healthcare institutions</td>
</tr>
<tr>
<td valign="top" align="left" style="background-color:#f2f2f2"><bold>Other anti-virulence factors</bold>
</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Strategy with reduced probability of resistance or selection of less virulent strains<break/>- Specificity of action avoiding microbiota depletion</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- Diagnosis necessary for personalized therapy<break/>- Plasticity of virulence factors expression<break/>- Require a combination therapy</td>
<td valign="top" align="left" style="background-color:#f2f2f2">- The rise of anti-virulence strategy (large number of putative virulence targets)<break/>- Anti-virulence drugs already approved (exotoxins blockage)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>This table is based on the following references for vaccines (<xref ref-type="bibr" rid="B57">Merakou et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B9">Bianconi et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B74">Sainz-Mej&#xed;as et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B58">Micoli et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B4">Antonelli et&#xa0;al., 2021</xref>), antibodies (<xref ref-type="bibr" rid="B45">Lakemeyer et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B1">Adlbrecht et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B103">Yaeger et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B105">Zurawski and McLendon, 2020</xref>), polymyxins (<xref ref-type="bibr" rid="B49">Li, et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B48">Lepak et&#xa0;al., 2020</xref>), new antibiotics (<xref ref-type="bibr" rid="B100">WHO, 2021</xref>; <xref ref-type="bibr" rid="B20">Dickey et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B93">Tse et&#xa0;al., 2017</xref>), new combinations of &#x3b2;-lactam/&#x3b2;-lactamase inhibitor (<xref ref-type="bibr" rid="B100">WHO, 2021</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>), phages (<xref ref-type="bibr" rid="B34">Friman et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B40">Jault et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B66">Patil et&#xa0;al., 2021</xref>), iron metabolism disruption (<xref ref-type="bibr" rid="B104">Zhang et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B32">Frei et&#xa0;al., 2020</xref>), anti-biofilm (<xref ref-type="bibr" rid="B20">Dickey et&#xa0;al., 2017</xref>), and other anti-virulence factors (<xref ref-type="bibr" rid="B20">Dickey et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B86">Theuretzbacher et&#xa0;al., 2020</xref>).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Current antibiotics are less effective due to increasing resistance, and some <italic>P. aeruginosa</italic> isolates are resistant to all available treatments, underlying the unmet medical need. Given the development duration, the pipeline remains unsatisfactory leading best case to the approval of new antibacterial drugs that treat CRPA in several years. In addition, as the United Nations, WHO, and numerous experts published in an April 29, 2019, report, immediate, coordinated, and ambitious action must be taken to avoid a potentially disastrous antimicrobial resistance crisis. If not, drug-resistant diseases could cause 10 million deaths each year by 2050 warns the UN Interagency Coordination Task Force on Antimicrobial Resistance<sup>16</sup>. Developing a new treatment takes years, however, COVID-19 pandemic has demonstrated that it is possible to accelerate the development of a molecule or a vaccine in case of crisis (<xref ref-type="bibr" rid="B44">Krammer, 2020</xref>). Beyond the investments needed to build a robust pipeline, the Community needs to reinvent medicine with new strategies of development to avoid the disaster.</p>
</sec>
<sec id="s13" sec-type="author-contributions">
<title>Author Contributions</title>
<p>SR, AG, and SB wrote the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s14" sec-type="funding-information">
<title>Funding</title>
<p>Work of SB team is funded by the Centre National de la Recherche Scientifique, the Aix-Marseille Universite&#x301;, and by grant from the Agence Nationale de la Recherche (ANR-21-CE11-0028-01). AG is supported by &#x201c;Vaincrela mucoviscidose&#x201d; (VLM) and &#x201c;Association Gre&#x301;gory Lemarchal&#x201d;(grant numbers RF20190502416 and RF20210502854), ANR-15-IDEX-02, SATT Linksium, and Fondation Universit&#xe9; Grenoble Alpes. SATT Linksium was not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication.</p>
</sec>
<sec id="s15" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. SR is currently working in the Medical Department of Novartis Gene Therapies France SAS as Senior Medical Science Manager. SR is a PhD student independently of his professional position and on a totally different therapeutic area.</p>
</sec>
<sec id="s16" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>We thank members of SB team for support.</p>
</ack>
<fn-group>
<fn id="fn1">
<label>1</label>
<p>
<uri xlink:href="https://www.astrazeneca.com/media-centre/press-releases/2014/medimmune-fda-medi3902-nosocomial-pneumonia-prevention-23092014.html#modal-historic-confirmation">AstraZeneca website: https://www.astrazeneca.com/media-centre/press-releases/2014/medimmune-fda-medi3902-nosocomial-pneumonia-prevention-23092014.html#modal-historic-confirmation [Accessed December 2021]</uri>
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<fn id="fn2">
<label>2</label>
<p>
<uri xlink:href="https://investors.aridispharma.com/2019-09-03-Aridis-Pharmaceuticals-Reports-Phase-2-Clinical-Trial-Results-of-AR-105-for-the-Treatment-of-Ventilator-Associated-Pneumonia-Caused-by-Pseudomonas-Aeruginosa">Aridis Pharmaceuticals website: https://investors.aridispharma.com/2019-09-03-Aridis-Pharmaceuticals-Reports-Phase-2-Clinical-Trial-Results-of-AR-105-for-the-Treatment-of-Ventilator-Associated-Pneumonia-Caused-by-Pseudomonas-Aeruginosa [Accessed December 2021].</uri>
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<label>3</label>
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<uri xlink:href="Trellis bioscience website: www.trellisbio.com/pipeline/bacteria.html">Trellis bioscience website: www.trellisbio.com/pipeline/bacteria.html [Accessed December 2021].</uri>
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<fn id="fn4">
<label>4</label>
<p>
<uri xlink:href="https://www.fda.gov/news-events/press-announcements/fda-approves-new-antibacterial-drug-treat-complicated-urinary-tract-infections-part-ongoing-efforts">FDA News Release December 16, 2019. https://www.fda.gov/news-events/press-announcements/fda-approves-new-antibacterial-drug-treat-complicated-urinary-tract-infections-part-ongoing-efforts [Accessed December 2021].</uri>
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<fn id="fn5">
<label>5</label>
<p>
<uri xlink:href="Polyphor website: https://www.polyphor.com/news/corporate-news-details/?newsid=1800485">Polyphor website: https://www.polyphor.com/news/corporate-news-details/?newsid=1800485[Accessed December2021].</uri>
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<label>6</label>
<p>
<uri xlink:href="Polyphor website: https://www.polyphor.com/news-adhoc/news-detail/?newsid=2176875">Polyphor website: https://www.polyphor.com/news-adhoc/news-detail/?newsid=2176875 [Accessed December2021].</uri>
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<fn id="fn7">
<label>7</label>
<p>
<uri xlink:href="FDA approves new treatment for complicated urinary tract and complicated intra-abdominal infections | FDA">FDA website: FDA approves new treatment for complicated urinary tract and complicated intra-abdominal infections | FDA [accessed December 2021].</uri>
</p>
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<fn id="fn8">
<label>8</label>
<p>
<uri xlink:href="FDA Approves Antibiotic to Treat Hospital-Acquired Bacterial Pneumonia and Ventilator-Associated Bacterial Pneumonia | FDA">FDA website: FDA Approves Antibiotic to Treat Hospital-Acquired Bacterial Pneumonia and Ventilator-Associated Bacterial Pneumonia | FDA [Accessed December 2021]. </uri>
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<fn id="fn9">
<label>9</label>
<p>
<uri xlink:href="https://www.venatorx.com/press-releases/venatorx-pharmaceuticals-provides-update-on-cefepime-taniborbactam/">Venatorx website: https://www.venatorx.com/press-releases/venatorx-pharmaceuticals-provides-update-on-cefepime-taniborbactam/ [Accessed December 2021].</uri>
</p>
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<fn id="fn10">
<label>10</label>
<p>
<uri xlink:href="https://www.armatapharma.com/pipeline/ap-pa02/">Armata Pharmaceutical website : https://www.armatapharma.com/pipeline/ap-pa02/ [Accessed December 2021].</uri>
</p>
</fn>
<fn id="fn11">
<label>11</label>
<p>
<uri xlink:href="https://www.felixbt.com/new-page">Felix Biotechnology website: https://www.felixbt.com/new-page [Accessed December 2021].</uri>
</p>
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<fn id="fn12">
<label>12</label>
<p>
<uri xlink:href="http://technophage.pt/pipeline/">Technophage website: http://technophage.pt/pipeline/ [Accessed December 2021].</uri>
</p>
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<fn id="fn13">
<label>13</label>
<p>
<uri xlink:href="https://www.aridispharma.com/ar-501/">Aridis pharmaceutical website: https://www.aridispharma.com/ar-501/ [Accessed December 2021].</uri>
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<label>14</label>
<p>Cystic Fibrosis Foundation website : <uri xlink:href="https://www.cff.org/Trials/Finder/details/374/IGNITE-Safety-and-effectiveness-of-gallium-nitrate-in-adults-with-cystic-fibrosis">https://www.cff.org/Trials/Finder/details/374/IGNITE-Safety-and-effectiveness-of-gallium-nitrate-in-adults-with-cystic-fibrosis [Accessed December 2021].</uri>
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<uri xlink:href="Aridis Announces Agreement with the FDA on Updated Phase 2 Clinical Trial Design for AR-501 - Sep 8, 2020 (aridispharma.com)">Aridis Pharmaceuticals website: Aridis Announces Agreement with the FDA on Updated Phase 2 Clinical Trial Design for AR-501 - Sep 8, 2020 (aridispharma.com) [Accessed December 2021].</uri>
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<p>WHO website news release on 29 April 2019: <uri xlink:href="https://New report calls for urgent action to avert antimicrobial resistance crisis (who.int)">https://New report calls for urgent action to avert antimicrobial resistance crisis (who.int)</uri> [Accessed December 2021]</p>
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