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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Ecol. Evol.</journal-id>
<journal-title>Frontiers in Ecology and Evolution</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Ecol. Evol.</abbrev-journal-title>
<issn pub-type="epub">2296-701X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fevo.2019.00401</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Ecology and Evolution</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title><italic>Borrelia bavariensis:</italic> Vector Switch, Niche Invasion, and Geographical Spread of a Tick-Borne Bacterial Parasite</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Margos</surname> <given-names>Gabriele</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/108493/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Fingerle</surname> <given-names>Volker</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/797426/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Reynolds</surname> <given-names>Stuart</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority</institution>, <addr-line>Oberschleissheim</addr-line>, <country>Germany</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Biology and Biochemistry, University of Bath</institution>, <addr-line>Bath</addr-line>, <country>United Kingdom</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Luciano Bosso, University of Naples Federico II, Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Katharine Sassandra Walter, Stanford University, United States; Sam Mechai, Public Health Agency of Canada (PHAC), Canada</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Gabriele Margos <email>gabriele.margos&#x00040;lgl.bayern.de</email>;<email>gmargos1&#x00040;gmail.com</email></corresp>
<fn fn-type="other" id="fn001"><p>This article was submitted to Biogeography and Macroecology, a section of the journal Frontiers in Ecology and Evolution</p></fn></author-notes>
<pub-date pub-type="epub">
<day>23</day>
<month>10</month>
<year>2019</year>
</pub-date>
<pub-date pub-type="collection">
<year>2019</year>
</pub-date>
<volume>7</volume>
<elocation-id>401</elocation-id>
<history>
<date date-type="received">
<day>16</day>
<month>07</month>
<year>2019</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>10</month>
<year>2019</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2019 Margos, Fingerle and Reynolds.</copyright-statement>
<copyright-year>2019</copyright-year>
<copyright-holder>Margos, Fingerle and Reynolds</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>The <italic>Borrelia burgdorferi</italic> sensu lato species complex currently consists of more than 20 species that utilize small vertebrate hosts as reservoirs and ticks of the genus <italic>Ixodes</italic> as vectors. The bacterial parasite species differ in their ecology (reservoir hosts, competent vectors) as well as geographical distribution. Several studies have defined reservoir host association as a driver for diversification, speciation and pattern of spatial occurrence of populations but in this review we focus on vector association and its role in diversification and speciation of <italic>Borrelia</italic>. <italic>Borrelia bavariensis</italic>, a member of the species complex, uses small mammals as reservoir hosts and can cause Lyme borreliosis in humans. Phylogeographic analysis employing both genetic and genomic data shows that this species has undergone a recent range expansion, invading Europe from its probable original range in Asia while undergoing a drastic genetic bottleneck, suggesting that the colonization of Europe was a single event. We hypothesize that this invasion-like range expansion coincided with a change in the parasite&#x00027;s tick vector, switching from <italic>Ixodes persulcatus</italic> in Asia to <italic>I. ricinus</italic> in Europe. Making extensive use of the ecological concept of niche, we discuss the importance of host and vector associations in defining spatial range and their possible role in speciation in the <italic>B. burgdorferi</italic> sensu lato species complex.</p></abstract> <kwd-group>
<kwd>geographic spread</kwd>
<kwd>tick-borne pathogenic bacteria</kwd>
<kwd><italic>Borrelia burgdorferi</italic> sensu lato</kwd>
<kwd><italic>Borrelia bavariensis</italic></kwd>
<kwd>vector interaction</kwd>
<kwd><italic>Ixodes ricinus</italic> complex</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="169"/>
<page-count count="20"/>
<word-count count="16347"/>
</counts>
</article-meta> 
</front>
<body>
<sec id="s1">
<title>Introduction&#x02014;Parasite Invasiveness</title>
<p>Just like their hosts, parasites may on occasion abruptly expand their geographic range in an invasion-like process (Hatcher et al., <xref ref-type="bibr" rid="B55">2012</xref>; Poulin, <xref ref-type="bibr" rid="B132">2017</xref>; Chalkowski et al., <xref ref-type="bibr" rid="B22">2018</xref>). The term &#x0201C;invasion&#x0201D; can be controversial. Some authors (e.g., Hoffmann and Courchamp, <xref ref-type="bibr" rid="B57">2016</xref>) consider the natural expansion of a species&#x00027; geographic range beyond its previously occurring limits to be essentially the same thing as a biological invasion caused by human introduction, while others (Wilson et al., <xref ref-type="bibr" rid="B165">2016</xref>) insist that the term &#x0201C;invasion&#x0201D; should be reserved for those cases where colonization is due to human agency. We don&#x00027;t intend to enter this debate, but suggest that when a natural colonization by a species of new geographic space occurs rapidly and on a single occasion as the result of the transfer of a small number of individuals, and involves its entry into and adaptation to a new niche, it is bound to share many of the characteristics of a human-assisted invasion. In particular, we note that such abrupt range expansions differ significantly from the gradual changes in geographic range that occur when the boundaries of an entire ecosystem shift with gradual geological or climatic change. For these reasons, in this paper we describe the range expansion of the particular parasite with which we are concerned as &#x0201C;invasion-like.&#x0201D;</p>
<p>Regardless of whether human agency is involved, an invading parasite enters a new geographic region in which it did not previously occur and where it now causes disease (Hatcher et al., <xref ref-type="bibr" rid="B55">2012</xref>). However, one can consider different mechanisms of invasion by parasites, as being due either to range expansion of host/vector populations (e.g., through changing climatic conditions) followed or paralleled by parasite expansion into expanded host/vector populations or due to &#x0201C;spill-over&#x0201D; and adaptation to new hosts/vectors. The invading parasite may cause changes in the population dynamics of the invaded population of the original host either directly through parasitism (Dunn, <xref ref-type="bibr" rid="B31">2009</xref>), or indirectly by affecting the success of the original host&#x00027;s competitors and predators (Hatcher et al., <xref ref-type="bibr" rid="B54">2006</xref>). In addition, it may affect populations of new host species through parasite &#x0201C;spillover&#x0201D; (Iglesias et al., <xref ref-type="bibr" rid="B61">2015</xref>), and also alter the success of other parasites already present in the new domain through competition for existing and new hosts (Dunn, <xref ref-type="bibr" rid="B31">2009</xref>). In turn, the parasite itself may as a result of its introduction undergo evolutionary change in order to adapt to its new circumstances (e.g., Juhasova et al., <xref ref-type="bibr" rid="B67">2016</xref>).</p>
<p>In this paper we consider the invasion-like range expansion into Europe from Asia of one particular vector-borne bacterial parasite, <italic>Borrelia bavariensis</italic>, a member of the Lyme Borreliosis group of spirochetes, <italic>Borrelia burgdorferi</italic> sensu lato (s.l.). The concept of geographical invasion by bacteria and other prokaryote microbes is relatively less well-developed than for eukaryotic organisms (Mallon et al., <xref ref-type="bibr" rid="B90">2015</xref>) or viruses (Kilpatrick, <xref ref-type="bibr" rid="B68">2011</xref>); one reason for this is that bacteria have until recently been widely assumed to be globally distributed and rapidly dispersed, with their abundance in any particular place determined only by the suitability of the local environment (O&#x00027;Malley, <xref ref-type="bibr" rid="B122">2007</xref>).</p>
<p>In the case of the invasive <italic>B. bavariensis</italic>, additional interest is generated by the fact that this organism is an obligate parasite of vertebrate animals transmitted by an arthropod vector; this raises the question of the extent to which the evolved adaptation of a parasite with a complex life history (Auld and Tinsley, <xref ref-type="bibr" rid="B4">2015</xref>) limits the extent of its geographic range. Consideration of how <italic>B. bavariensis</italic> extended its geographic range through vector adaptation may also shed light on the phylogeography of other members of the <italic>B. burgdorferi</italic> s.l. species complex.</p>
<p>Most previous work on parasite invasions has referred to eukaryotic parasites, and much less attention has been devoted to invasion-like range expansions of vector-transmitted pathogens and parasites. A notable exception to this generalization is that outbreaks of vector transmitted viruses in new geographic zones have been intensively investigated (reviewed by Randolph and Rogers, <xref ref-type="bibr" rid="B137">2010</xref>). West Nile Virus (Charrel et al., <xref ref-type="bibr" rid="B23">2003</xref>), Chikungunya virus (Tsetsarkin et al., <xref ref-type="bibr" rid="B155">2007</xref>; Fritz et al., <xref ref-type="bibr" rid="B42">2019</xref>), Dengue virus (Delatte et al., <xref ref-type="bibr" rid="B27">2011</xref>), Bluetongue virus (Mardulyn et al., <xref ref-type="bibr" rid="B92">2013</xref>), Zika virus (Metsky et al., <xref ref-type="bibr" rid="B106">2017</xref>), and Sindbis virus (Ling et al., <xref ref-type="bibr" rid="B87">2019</xref>) have received particular attention. In many of these cases, colonization of new geographic zones has involved human assistance. However, much less is known about invasion like range expansions in vector-borne bacteria.</p>
<p>Understanding how invasions of microbial parasites occur focuses attention on prediction. Identifying those parasites that pose the greatest potential threats to the human and animal health through invasion permits prophylactic strategies to be devised and scarce public health resources to be allocated with maximal effect. To identify factors that make the parasite potentially &#x0201C;invasive,&#x0201D; we need to understand the biotic and abiotic drivers that initially (i.e., before the invasion) acted to limit the geographic range of the parasite in question. These will be many, but it is obviously particularly important to understand the contribution(s) made by the home range(s) of the parasite&#x00027;s existing host(s) and vector(s). In this paper we make particular use of the ecological and evolutionary concept of <italic>niche</italic> to consider the likely adaptive mechanisms that enable both vector-switching and geographic invasion. Vector-switch is considered here as the adaptation of a parasite to a vector previously non-permissive for transmission, i.e., not vector-competent. Landscape genomics has already proved useful in understanding adaptation of invading free-living species to the physical environment (Li et al., <xref ref-type="bibr" rid="B85">2017</xref>), but we are not aware of previous attempts to analyse the geographic invasiveness of a bacterial parasite in terms of its adaptation to a new parasitic or vector niche.</p>
<p>Niche theory has already been used as a tool to help understand how free-living microbes can succeed in invading natural microbial communities through the evolution of adaptive traits (see for example, Eisenhauer et al., <xref ref-type="bibr" rid="B36">2013</xref>). Apart from selection and adaptation ecological processes including migration and population dynamics are important features of invasion processes. Thus, in their perspective paper on microbial invasions, Kinnunen et al. (<xref ref-type="bibr" rid="B70">2016</xref>) are sparing in their use of the term &#x0201C;niche,&#x0201D; instead they emphasize ecological processes such as migration and population dynamics. Such processes are almost certainly important in the invasion of free-living microbes into new environments. We appreciate that these processes may well be important in determining the probability of an invasion occurring in vector-transmitted parasites too (e.g., Ogden et al., <xref ref-type="bibr" rid="B115">2008</xref>, <xref ref-type="bibr" rid="B117">2013a</xref>; Mechai et al., <xref ref-type="bibr" rid="B103">2018</xref>), but in the present paper we have chosen to focus on evolutionary change in the form of horizontal gene transfer and adaptation (Jacquot et al., <xref ref-type="bibr" rid="B64">2014</xref>). Not least, this is because both these processes leave an identifiable signature in the parasite&#x00027;s genome (Longdon et al., <xref ref-type="bibr" rid="B88">2018</xref>).</p>
<p>We have structured our review into two parts, the first part is on niche theory, explores niche concepts and the role of niches in biological invasion processes. The second part surveys the history and geographic distribution of the <italic>B. burgdorferi</italic> s.l. species complex and identifies <italic>B. bavariensis</italic> as a case to study the biological invasion of a vector-transmitted bacterial parasite. Emphasis is allotted to the role of tick vectors in driving diversification and speciation in this bacterial species complex, describing main vectors of <italic>Borrelia</italic> and factors that may influence vector competence (e.g., the genetic make-up of the bacteria, tick physiology, immunity, microbiome). Last but not least we put forward hypotheses on the mechanisms of the invasion-like spread of a bacterial parasite into new geographic areas.</p>
</sec>
<sec id="s2">
<title>Parasites: Niche and Invasions</title>
<p>The concept of multidimensional niche space helps to understand how the limits of an organism&#x00027;s geographic range are determined (Gaston, <xref ref-type="bibr" rid="B43">2003</xref>) and therefore also casts light on the mechanisms of invasions and invasion-like range expansions and whether particular species are inherently invasive (Peterson et al., <xref ref-type="bibr" rid="B128">2011</xref>). Analogous to the niche occupied by a statue in a public building, an ecological niche is an ecological space occupied by a particular organism that defines its role in the ecosystem. The larger and more complex the boundaries of the niche, the more extensive and many-faceted is the ecological role of the particular organism.</p>
<p>The term &#x0201C;niche&#x0201D; was originally introduced by Grinnell (<xref ref-type="bibr" rid="B50">1917</xref>), who defined it in descriptive environmental terms, and was adapted by Elton (<xref ref-type="bibr" rid="B37">1927</xref>), who instead chose to use functional terms based on community role. Although &#x0201C;niche&#x0201D; is fundamentally a phenomenological concept that aims to describe an organism&#x00027;s way of life (for example in exploiting other organisms for food, and evading exploitation by organisms that seek to predate or parasitize it), niche is of course also about the precision with which the organism is genetically adapted (for example through its physiology) to the environmental conditions it encounters. Hutchinson (<xref ref-type="bibr" rid="B60">1957</xref>) greatly improved the concept by pointing out that an organism&#x00027;s niche has many &#x0201C;dimensions&#x0201D; each of which describes one aspect of the focal organism&#x00027;s way of life and environment (allowing the Grinnell and Elton usages of the term to be combined).</p>
<sec>
<title>Niche Helps to Understand Invasiveness</title>
<p>An &#x0201C;unoccupied niche&#x0201D; is susceptible to colonization, with or without human assistance, and identifying that niche leads to predictions about which organisms will invade and how they will spread. One prediction, for example, is that a species having &#x0201C;a broader niche&#x0201D; will be more invasive than another with &#x0201C;a narrower niche&#x0201D; (Vazquez, <xref ref-type="bibr" rid="B158">2006</xref>). The hypothesis that a &#x0201C;broader&#x0201D; niche allows the organism to display a more extensive set of adaptations to varying ecological conditions, so that a larger geographic area will be potentially available to it (Slatyer et al., <xref ref-type="bibr" rid="B143">2013</xref>). The idea that invasiveness is correlated with overall &#x0201C;niche breadth&#x0201D; can be tested at a simple level; the hypothesis is not universally validated by evidence but has received strong support in some cases (e.g., Sol, <xref ref-type="bibr" rid="B145">2016</xref>; Granot et al., <xref ref-type="bibr" rid="B49">2017</xref>). Unfortunately, however, it is not self-evident what is meant by overall &#x0201C;niche breadth&#x0201D; nor how it can be measured or compared. The concept of the Hutchinsonian niche with its multiple dimensions helps to visualize the niche&#x00027;s complexity, but since each dimension varies in breadth, possibly but not necessarily independently of all other dimensions, it is often not clear how the various dimensions can be summed to give a single measure of niche breadth. For example, what units should be used to describe a niche&#x00027;s dimensions? It is thus difficult to characterize the overall &#x0201C;breadth&#x0201D; of a niche in a simple way.</p>
<p>A further problem is that niche breadth may be maintained through evolutionary adaptation to more than one niche dimension, in which case, local populations of a species may each be separately adapted to local conditions, so that &#x0201C;niche breadth&#x0201D; is not actually a characteristic of the genome of the species in general at all, but a reflection of its genetic diversity. As a consequence, an invasion into a new geographic region would most likely be achieved by migration from only a suitably pre-adapted subset of the original species and this might be expected to leave the signature of a selective sweep in the genome of the invading population. Alternatively, the original niche breadth of a species may be the result of phenotypic plasticity, a situation that would be likely to favor invasiveness without genetic change. Such phenotypic plasticity is likely to be present in species that originally inhabit rapidly fluctuating environments (Lee and Gelembiuk, <xref ref-type="bibr" rid="B83">2008</xref>).</p>
<p>Finally, it is simplistic to suppose that the existence of a correlation between niche breadth and geographic range size necessarily implies a causal relationship in the direction of the former to the latter. It may also be the case that larger geographic range actually drives adaptation to greater variety of niches (Jahner et al., <xref ref-type="bibr" rid="B65">2011</xref>).</p>
</sec>
<sec>
<title>The Parasitic Niche</title>
<p>The above discussion indicates that there are problems in using niche theory to understand invasiveness (i.e., the tendency to invasion-like geographic range expansion when the opportunity for this arises). Parasites, however, offer a way out of these difficulties. Obligate vector-borne parasites live their entire lives within their hosts and vectors and do not occur free in the environment. Niches occupied by such parasites are therefore almost all entirely associated with selective forces exerted by (or at least mediated through) their vectors and hosts. Because related parasites tend to have vectors and hosts that share many characteristics, and can thus be measured in the same way, parasites offer an exceptionally favorable opportunity to test niche-related ideas about invasiveness; we have a much better chance of realistically comparing &#x0201C;niche breadth&#x0201D; between related parasites. We might say that a broader parasitic niche would be one that has a larger number of dimensions (i.e., corresponding to a larger number of hosts/vectors) or dimensions that are spatially more extensive (i.e., the geographic ranges of their hosts/vectors are larger). The precision with which the parasite&#x00027;s niche is described might be increased by considering each of the different physiological or biochemical interactions between the parasite and its host (for example the various immune defenses deployed by the host, and associated countermeasures used by the parasite) to be a separate dimension of the niche. As far as we are aware, however, the hypothesis that the geographical invasiveness of obligate parasites is related to the breadth of host- and/or vector-associated niche space has not been tested (e.g., Vazquez, <xref ref-type="bibr" rid="B158">2006</xref>; Slatyer et al., <xref ref-type="bibr" rid="B143">2013</xref>).</p>
<p>On the other hand, parasites co-evolve with hosts and vectors (Woolhouse et al., <xref ref-type="bibr" rid="B166">2002</xref>; Wade, <xref ref-type="bibr" rid="B162">2007</xref>; Toft and Andersson, <xref ref-type="bibr" rid="B153">2010</xref>), because parasites exert strong selective pressures on host(s) (and vectors) which in turn evolve to reject the parasite, effectively narrowing the niche available to the parasite. Much of the program of parasitological research is concerned with identifying such co-evolutionary adaptations (Penczykowski et al., <xref ref-type="bibr" rid="B127">2016</xref>). Co-evolution is notoriously tricky to study, because it is a system that is subject to positive feedback. It is often found that co-evolution is local, rapid and episodic, affecting several different gene pairs that coevolve episodically and occur unpredictably in time and space (this is Thompson&#x00027;s &#x0201C;geographic mosaic&#x0201D; model; Thompson, <xref ref-type="bibr" rid="B152">1999</xref>).</p>
<p>Another aspect of niche theory that is relevant here is that the fundamental niche of an organism, which extends to the furthest limits of all dimensions that can be tolerated by that species, is almost always greater in extent than the realized niche, which is that part of the niche that is actually occupied. The greater the mismatch between the realized and fundamental niche, the greater is the potential for invasion (Soberon and Arroyo-Pena, <xref ref-type="bibr" rid="B144">2017</xref>). It is obvious that the extent to which the size of the realized niche approaches that of the fundamental niche is subject to limitations due to local physical environmental conditions; for example, if it is too hot, too cold, too wet, or too dry. In the case of a parasite, this kind of environmental limitation may be mediated through biotic interactions (because of their own physical limitations, hosts, and vectors are not present everywhere). It is less intuitively obvious that in the case of parasites, biotic limitations may not be due to unsuitable environmental conditions, but due to phylogeographic contingency: any one of a set of potentially interacting parasites, hosts and vectors may be able to persist in a particular geographic zone, but is nevertheless presently absent simply because the organism in question has not yet expanded its range to occupy all of its fundamental niche. This absence of either the host or the vector may then limit the occurrence of the parasite.</p>
<p>Such a mismatch between the fundamental and realized niche can be corrected by geographic range expansion. Considering this from the point of view of the parasite, such realization of potential niche space can happen in two ways: first the parasite may invade a new environment when an existing host or vector expands its own range, taking the parasite with it. In this case, successful range expansion of the parasite depends completely on the invasiveness of the existing host or vector. Alternatively, a parasite may start utilizing a new species as host. This parasite-host combination might not have been utilized previously simply because that host species did not co-occur with the parasite in its existing range. Removal of a former landscape or climatic barrier to geographic range expansion of that host or vector may allow the parasite to expand its geographic range within what was actually always the fundamental niche simply because it can now exploit a new host or vector in this previously unexploited environment. For obligate parasites, the opportunity to enter the new geographic zone will likely depend on being transported there within an existing host or vector, but once it is there its success may depend on a switch in its host(s) or vector(s). An example of this is the invasion of European fresh-water habitats by the fungal parasite <italic>Aphanomyces astaci</italic>, a parasite of the introduced North American signal crayfish, <italic>Pacifastacus leniusculus</italic>. As a result, the parasite has increased the extent of its realized niche to include the European crayfish host <italic>Austropotamobius pallipes</italic>, which is now revealed as a part of its fundamental niche that was previously only latent (Edgerton et al., <xref ref-type="bibr" rid="B32">2004</xref>; Vr&#x000E5;lstad et al., <xref ref-type="bibr" rid="B161">2011</xref>).</p>
</sec>
<sec>
<title>Different Ecological Processes Limit Expansion of the Fundamental and Realized Niches</title>
<p>The increase in size of the realized niche by geographic range expansion to occupy a greater fraction of the fundamental niche necessarily involves an increase in population size. This is an ecological process that need not involve evolutionary change at all. The implication is that once an existing barrier to exploitation within one or more existing niche dimensions has been removed, population dynamic feedbacks will allow population expansion to occur; density-dependent limitations will be temporarily reduced and allow an increase in the number of surviving progeny. As the fraction of the fundamental niche that is actually realized increases, these feedbacks will act to slow and eventually stop further population growth. By contrast, an invading species may expand its geographic range (i.e., invade a new adaptive zone) because of some genetically based adaptive change (in the case of a parasite this might be the ability to exploit a new host or vector). In this case we see a change in the extent of the fundamental niche, which may or may not be accompanied by a change in the proportion of the fundamental niche that is actually realized.</p>
<p>In the latter case, it is appropriate to ask what sets limits to the size (geographic extent) of the fundamental niche? Why can parasites not simply adapt to colonize more and more kinds of host or vector? Of course, the answer is that there are trade-offs to the acquisition of new adaptations. In the case of a parasite, the fitness advantage that accrues as a result of the ability to utilize a new host or vector species may be offset by a loss of fitness that results from a decreased ability to exploit existing hosts or vectors.</p>
</sec>
</sec>
<sec id="s3">
<title>The <italic>Borrelia burgdorferi</italic> Sensu Lato (S.L.) Species Complex</title>
<p>Lyme borreliosis (or Lyme disease) is a disease of humans caused by tick-transmitted parasitic spirochetal bacteria belonging to the <italic>B. burgdorferi</italic> s.l. species complex. The bacteria are maintained in natural transmission cycles between their vertebrate reservoir hosts and vector ticks of the genus <italic>Ixodes</italic> (<xref ref-type="fig" rid="F1">Figure 1</xref>; Kurtenbach et al., <xref ref-type="bibr" rid="B79">2006</xref>; Radolf et al., <xref ref-type="bibr" rid="B134">2012</xref>). Currently more than 20 genospecies have been described that vary in their host associations, vector associations and geographical distribution (<xref ref-type="table" rid="T1">Table 1</xref>, <xref ref-type="fig" rid="F2">Figure 2</xref>). Adaptation to different hosts has been considered to be one of the main drivers for diversification of species of the <italic>B. burgdorferi</italic> s.l. species complex and for determining the spatial range and structure of populations (Piesman, <xref ref-type="bibr" rid="B130">2002</xref>; Kurtenbach et al., <xref ref-type="bibr" rid="B79">2006</xref>; Hoen et al., <xref ref-type="bibr" rid="B56">2009</xref>; Vollmer et al., <xref ref-type="bibr" rid="B159">2011</xref>, <xref ref-type="bibr" rid="B160">2013</xref>; Margos et al., <xref ref-type="bibr" rid="B95">2012b</xref>; Ogden et al., <xref ref-type="bibr" rid="B119">2013b</xref>; Mechai et al., <xref ref-type="bibr" rid="B103">2018</xref>). Although an extensive range of wild vertebrates can act as hosts for the <italic>B. burgdorferi</italic> s.l. complex as a whole, with lizards, birds, and small mammals being exploited, most single <italic>B. burgdorferi</italic> s.l. species can utilize only a subset of these hosts to support their life cycle (Gern et al., <xref ref-type="bibr" rid="B47">1998</xref>; Gern and Humair, <xref ref-type="bibr" rid="B48">2002</xref>). There is also a number of <italic>Ixodes</italic> species that act as competent vectors for <italic>B. burgdorferi</italic> s.l. As for hosts, many single <italic>B. burgdorferi</italic> s.l. species are adapted to utilize a subset of these <italic>Ixodes</italic> species as vector (Masuzawa, <xref ref-type="bibr" rid="B99">2004</xref>; Margos et al., <xref ref-type="bibr" rid="B97">2011</xref>). However, the impact of vector association on <italic>B. burgdorferi</italic> s.l. diversification and speciation is less well-explored.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><italic>Ixodes</italic> and <italic>Borrelia</italic> life cycle. The developmental time from egg to adult <italic>Ixodes</italic> tick depends on climate and environmental conditions and may take 2&#x02013;7 years. Each of the stages, larvae, nymph and adult female take one blood meal that can&#x02014;depending on the stage&#x02014;last 3&#x02013;10 days. Engorged ticks drop off the host, digest the blood meal, and molt into the next stage. Importantly, both, larvae and nymphs, prefer small to medium sized vertebrates as host. This and the questing phenology of these stages ensures transmission of <italic>Borrelia</italic> from host to vector and to the next host. Adult females prefer larger animals such as deer as host. Deer has been shown to be incompetent as <italic>Borrelia</italic> reservoir host but they are essential for maintaining tick populations. Humans are considered accidental hosts and are dead-end hosts for <italic>Borrelia</italic>.</p></caption>
<graphic xlink:href="fevo-07-00401-g0001.tif"/>
</fig>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>The <italic>Borrelia burgdorferi</italic> sensu lato species complex.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Species</bold></th>
<th valign="top" align="left"><bold>Type strain</bold></th>
<th valign="top" align="left"><bold>Suspected reservoir hosts</bold></th>
<th valign="top" align="left"><bold>Suspected vector species</bold></th>
<th valign="top" align="left"><bold>Distribution</bold></th>
<th valign="top" align="left"><bold>Human pathogenicity</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>B. afzelii</italic></td>
<td valign="top" align="left">VS461</td>
<td valign="top" align="left">Rodents, insectivores</td>
<td valign="top" align="left"><italic>Ixodes ricinus, Ixodes persulcatus, Ixodes hexagonus</italic></td>
<td valign="top" align="left">Asia, Europe</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. americana</italic></td>
<td valign="top" align="left">SCW-41</td>
<td valign="top" align="left">Birds, rodents</td>
<td valign="top" align="left"><italic>Ixodes minor, Ixodes pacificus</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. andersonii</italic> (p)</td>
<td valign="top" align="left">21038</td>
<td valign="top" align="left">Birds, rabbits</td>
<td valign="top" align="left"><italic>Ixodes dentatus</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. bavariensis</italic></td>
<td valign="top" align="left">PBi</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes ricinus, Ixodes persulcatus, Ixodes uriae<xref ref-type="table-fn" rid="TN1"><sup><italic>a</italic></sup></xref></italic></td>
<td valign="top" align="left">Asia, Europe</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. bissettiae</italic></td>
<td valign="top" align="left">DN-127</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes spinipalpis, Ixodes pacificus, Ixodes ricinus</italic></td>
<td valign="top" align="left">Europe, North America</td>
<td valign="top" align="left">Potentially</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. burgdorferi</italic> sensu stricto</td>
<td valign="top" align="left">B31</td>
<td valign="top" align="left">Birds, rodents, insectivores, carnivores</td>
<td valign="top" align="left"><italic>Ixodes ricinus, Ixodes scapularis, Ixodes affinis, Ixodes pacificus, Ixodes minor, Ixodes hexagonus</italic></td>
<td valign="top" align="left">Europe, North America</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. californiensis</italic></td>
<td valign="top" align="left">CA446</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes pacificus, Ixodes spinipalpis, Ixodes jellisoni</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. carolinensis</italic></td>
<td valign="top" align="left">SCW-22</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes minor</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. chilensis</italic> (p)</td>
<td valign="top" align="left">VA1 (p)</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes stilesi</italic></td>
<td valign="top" align="left">South America</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. garinii</italic></td>
<td valign="top" align="left">20047</td>
<td valign="top" align="left">Birds</td>
<td valign="top" align="left"><italic>Ixodes ricinus, Ixodes persulcatus, Ixodes uriae</italic><xref ref-type="table-fn" rid="TN1"><sup>a</sup></xref></td>
<td valign="top" align="left">Asia, Europe</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. japonica</italic></td>
<td valign="top" align="left">HO14</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes ovatus</italic></td>
<td valign="top" align="left">Asia</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. kurtenbachii</italic></td>
<td valign="top" align="left">25015</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>?</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Potentially</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. lanei</italic></td>
<td valign="top" align="left">CA28-91</td>
<td valign="top" align="left">Lagomorphs?</td>
<td valign="top" align="left"><italic>Ixodes spinipalpis, Ixodes pacificus</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. lusitaniae</italic></td>
<td valign="top" align="left">PoTiB2</td>
<td valign="top" align="left">Lizards</td>
<td valign="top" align="left"><italic>Ixodes ricinus</italic></td>
<td valign="top" align="left">Europe</td>
<td valign="top" align="left">Potentially</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. mayonii</italic></td>
<td valign="top" align="left">M14-1420</td>
<td valign="top" align="left">Rodents?</td>
<td valign="top" align="left"><italic>Ixodes scapularis</italic></td>
<td valign="top" align="left">North America</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. sinica</italic></td>
<td valign="top" align="left">CMN3</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes ovatus</italic></td>
<td valign="top" align="left">Asia</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. spielmanii</italic></td>
<td valign="top" align="left">PC-Eq17</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes ricinus, Ixodes hexagonus</italic></td>
<td valign="top" align="left">Europe</td>
<td valign="top" align="left">Yes</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. tanukii</italic></td>
<td valign="top" align="left">Hk501</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes tanuki</italic></td>
<td valign="top" align="left">Asia</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. turdi</italic></td>
<td valign="top" align="left">Ya501</td>
<td valign="top" align="left">Birds</td>
<td valign="top" align="left"><italic>Ixodes turdus, Ixodes frontalis, Ixodes ricinus</italic></td>
<td valign="top" align="left">Asia, Europe</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. valaisiana</italic></td>
<td valign="top" align="left">VS116</td>
<td valign="top" align="left">Birds</td>
<td valign="top" align="left"><italic>Ixodes ricinus</italic></td>
<td valign="top" align="left">Europe</td>
<td valign="top" align="left">No</td>
</tr>
<tr>
<td valign="top" align="left"><italic>B. yangtzensis</italic></td>
<td valign="top" align="left">Okinawa CW62</td>
<td valign="top" align="left">Rodents</td>
<td valign="top" align="left"><italic>Ixodes granulatus</italic></td>
<td valign="top" align="left">Asia</td>
<td valign="top" align="left">potentially</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><italic>(p), proposed</italic>.</p>
<fn id="TN1">
<label>a</label>
<p><italic>In sea bird colonies in Canada</italic>.</p></fn>
</table-wrap-foot>
</table-wrap>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Distribution of <italic>Borrelia burgdorferi</italic> sensu lato genospecies. To date, 21 <italic>Borrelia</italic> genospecies have been named and their geographic ranges are shown here. The gray background corresponds to the presence of <italic>Ixodes</italic> vectors (see above). <italic>B. turdi</italic> (<sup>&#x0002A;</sup>), also occurs in Europe. The dotted circle represents the <italic>B. garinii</italic> transmission cycle that ensues in sea bird colonies in the Southern and Northern hemisphere. The latter is not shown to reasons of clarity.</p></caption>
<graphic xlink:href="fevo-07-00401-g0002.tif"/>
</fig>
<sec>
<title>Geographic Ranges of the Lyme Borreliosis Spirochetes</title>
<p>The dependence of <italic>Borrelia</italic> on both vector and reservoir hosts determines the geographic distribution of the Lyme borreliosis group of spirochetes. With few exceptions such as <italic>B. chilensis</italic> (Ivanova et al., <xref ref-type="bibr" rid="B62">2014</xref>), most <italic>B. burgdorferi</italic> s.l. species are found between 40 and 60&#x000B0; latitude where Lyme borreliosis is reported to occur in humans (<xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<p>The geographic ranges of the various <italic>B. burgdorferi</italic> s.l. species (Margos et al., <xref ref-type="bibr" rid="B97">2011</xref>) are in each case limited to those locations in which both reservoir hosts and vector ticks are able to maintain natural transmission cycles (Kurtenbach et al., <xref ref-type="bibr" rid="B79">2006</xref>, <xref ref-type="bibr" rid="B80">2010</xref>) and thus we should be able to define the fundamental niche of each <italic>Borrelia</italic> species simply by taking account of where its vectors and hosts occur. So long as at least one associated vector and one associated host are present in a particular geographic zone, a <italic>Borrelia</italic> spirochete utilizing them could theoretically be maintained there. But because most <italic>B. burgdorferi</italic> s.l. species can utilize multiple vertebrate host species and a number can utilize more than one vector, and because the ecological associations between borreliae, ticks, and reservoir hosts are not all equivalent in strength, the realized niche actually achieved by each <italic>B. burgdorferi</italic> s.l. species will almost always in practice be considerably less than the simple overlap of the geographic measures (Tsao, <xref ref-type="bibr" rid="B154">2009</xref>). The actual spatial limitation for each spirochete species (i.e., its realized niche) will be roughly equivalent to the sum of all those areas in which both at least one vector species and one host species occur at sufficiently high density to maintain its transmission cycle. In more formal terms, the value of the basic reproduction number R<sub>0</sub> for every local population of the parasite, summed over all its hosts and vectors, must exceed unity (Randolph, <xref ref-type="bibr" rid="B135">1998</xref>; Hartemink et al., <xref ref-type="bibr" rid="B53">2008</xref>; Tsao, <xref ref-type="bibr" rid="B154">2009</xref>). The relative contributions to the overall R<sub>0</sub> of particular host and vector associations may of course vary between particular locations within its distribution.</p>
<p>Importantly, however, we cannot simply add up values of R<sub>0</sub> that have been determined for each vector and each host under laboratory conditions, because the presence of less efficient vectors and hosts will impact negatively on the value of R<sub>0</sub> achieved by the &#x0201C;best&#x0201D; vectors and hosts (Randolph and Craine, <xref ref-type="bibr" rid="B136">1995</xref>; Ostfeld et al., <xref ref-type="bibr" rid="B123">2006</xref>). These negative effects may be very important. Some potential mammalian hosts (mostly large animals such as ruminants) can be colonized by <italic>B. burgdorferi</italic> s.l. spirochetes when they are bitten by an infected tick vector, but are completely non-permissive when it comes to transmission of the bacteria to a new tick. In fact, feeding on a deer may actually clear a <italic>Borrelia</italic> infection in a tick (Telford et al., <xref ref-type="bibr" rid="B151">1988</xref>; Kurtenbach et al., <xref ref-type="bibr" rid="B81">1998</xref>). The presence of such &#x0201C;dead end hosts&#x0201D; can influence the parasite&#x00027;s success in diametrically opposite ways. On one hand, the presence of deer in a particular geographic zone may permit the population density of the vector ticks that transmit <italic>Borrelia</italic> to increase; this increases the likelihood of successful transmission of spirochetes from infected reservoir hosts to ticks and thus increases R<sub>0</sub>. On the other hand, the presence of large numbers of deer may drive ticks to feed with greater probability on deer than on small mammals and this may actually suppress the spirochete infection rate of true reservoir hosts in that location (reviewed by Ogden and Tsao, <xref ref-type="bibr" rid="B120">2009</xref>; Kilpatrick et al., <xref ref-type="bibr" rid="B69">2017</xref>).</p>
<p>Furthermore, the application of multilocus sequence typing to <italic>B. burgdorferi</italic> sensu stricto in combination with landscape ecology has shown that variation in host availability or landscape connectivity can strongly impact the spatial pattern of population distribution (Hoen et al., <xref ref-type="bibr" rid="B56">2009</xref>; Margos et al., <xref ref-type="bibr" rid="B95">2012b</xref>; Mechai et al., <xref ref-type="bibr" rid="B103">2018</xref>). In the late nineteenth century, human-induced changes to habitats and severe hunting in the northeastern USA almost led to regional extinction of deer, which are important hosts for tick survival (Barbour and Fish, <xref ref-type="bibr" rid="B7">1993</xref>). As a consequence of a likely decline of vector populations, <italic>Borrelia</italic> populations were reduced to spatially divided refuge populations in Northeast and Midwest. Independent expansion of these populations correlated with reintroduction of hosts for vector and <italic>Borrelia</italic> as well as environmental ecological changes such as reforestation (Hoen et al., <xref ref-type="bibr" rid="B56">2009</xref>). Other population boundaries correlated with landscape barriers such as the Great Plains and/or the Rocky Mountains (Margos et al., <xref ref-type="bibr" rid="B95">2012b</xref>). In a more recent study attempting to understand spatial spread pattern of <italic>B. burgdorferi</italic> s.s. into a zone of emerging Lyme borreliosis risk, the importance of landscape connectivity for the spatial distribution of <italic>B. burgdorferi</italic> s.s. of certain sequence types was underlined (Mechai et al., <xref ref-type="bibr" rid="B103">2018</xref>).</p>
<p>Apart from host associations that impact the distribution of <italic>Borrelia</italic> species and populations, the non-uniform distribution pattern of <italic>Borrelia</italic> genospecies observed in field studies suggests that vector associations (based on differential vector competence) do indeed play an important role in limiting their geographic distribution ranges (<xref ref-type="fig" rid="F3">Figure 3</xref>; Margos et al., <xref ref-type="bibr" rid="B97">2011</xref>). Evidence for this is provided by the ability of some <italic>Borrelia</italic> species to utilize a wide range of vectors (Masuzawa, <xref ref-type="bibr" rid="B99">2004</xref>; Margos et al., <xref ref-type="bibr" rid="B93">2012a</xref>), for example <italic>B. garinii</italic> can be vectored by <italic>I. persulcatus, I.pavlovskyi, I. ricinus</italic>, and <italic>I</italic>. <italic>uriae</italic>. Accordingly, <italic>B. garinii</italic>&#x00027;s geographic distribution ranges from Japan to France and to sea bird colonies in both the Northern and Southern Hemispheres (<xref ref-type="fig" rid="F2">Figure 2</xref>). <italic>B. garinii</italic> has been found in sea bird colonies in Newfoundland (Munro et al., <xref ref-type="bibr" rid="B112">2017</xref>) but has not been discovered in <italic>I. scapularis</italic> dominated regions or in <italic>I. pacificus</italic> (Hamer et al., <xref ref-type="bibr" rid="B52">2007</xref>; Hoen et al., <xref ref-type="bibr" rid="B56">2009</xref>; Ogden et al., <xref ref-type="bibr" rid="B116">2010</xref>; Mechai et al., <xref ref-type="bibr" rid="B102">2013</xref>; Fedorova et al., <xref ref-type="bibr" rid="B38">2014</xref>). Similarly, <italic>B. burgdorferi</italic> s.s. is able to utilize <italic>I. scapularis, I. pacificus, I. spinipalpis</italic>, and <italic>I. affinis</italic> as vectors in North America (Burgdorfer et al., <xref ref-type="bibr" rid="B16">1982</xref>; Maupin et al., <xref ref-type="bibr" rid="B101">1994</xref>; Clover and Lane, <xref ref-type="bibr" rid="B24">1995</xref>; Maggi et al., <xref ref-type="bibr" rid="B89">2010</xref>), as well as <italic>I. ricinus</italic> in Europe (Rauter and Hartung, <xref ref-type="bibr" rid="B138">2005</xref>; Sertour et al., <xref ref-type="bibr" rid="B142">2018</xref>), but has not been found in <italic>I. persulcatus</italic> (Korenberg et al., <xref ref-type="bibr" rid="B75">2002</xref>; Mukhacheva and Kovalev, <xref ref-type="bibr" rid="B109">2013</xref>). <italic>B. valaisiana</italic>, a bird adapted <italic>Borrelia</italic> species, is frequently found in Europe associated with <italic>I. ricinus</italic> but only a single occurrence in Russia has been recorded (Kurilshikov et al., <xref ref-type="bibr" rid="B78">2014</xref>) suggesting that <italic>I. persulcatus</italic> is not a competent vector. Consistent with this, in the overlapping zone of <italic>I. ricinus</italic> and <italic>I. persulcatus</italic>, the prevalence of <italic>B. valaisiana</italic> is higher in <italic>I. ricinus</italic> and drops to much lower values in <italic>I. persulcatus</italic> (Bormane et al., <xref ref-type="bibr" rid="B12">2004</xref>).</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Phylogenetic relationship of <italic>Borrelia</italic> genospecies. The phylogeny was generated using concatenated sequences of MLST housekeeping genes. <italic>Borrelia bavariensis</italic> is closest related and forms a sister clade to <italic>B. garinii</italic>. With permission from Margos et al. (<xref ref-type="bibr" rid="B96">2009</xref>), Applied and Environmental Microbiology 75, 5410&#x02013;5416.</p></caption>
<graphic xlink:href="fevo-07-00401-g0003.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<title><italic>Borrelia bavariensis</italic>&#x02014;A Model for Vector Adaptation, Spatial Spread, and Species Invasion</title>
<p><italic>Borrelia bavariensis</italic> is one of the &#x0003E;20 named and proposed genospecies within the <italic>B. burgdorferi</italic> s.l. species complex (Margos et al., <xref ref-type="bibr" rid="B94">2016</xref>). <italic>Borrelia bavariensis</italic> was described as a new genospecies of the <italic>B. burgdorferi</italic> s.l. species complex using MLSA (<xref ref-type="fig" rid="F3">Figure 3</xref>; Margos et al., <xref ref-type="bibr" rid="B96">2009</xref>, <xref ref-type="bibr" rid="B98">2013</xref>). Ecological considerations and measures of genetic distances showed that <italic>B. bavariensis</italic> was sufficiently divergent from <italic>B. garinii</italic> (the closest related species) to deserve species status. Prior to this <italic>B. bavariensis</italic> had been considered to belong to the species <italic>B. garinii</italic>. This was based on methods using a serotyping system with monoclonal antibodies and or intergenic spacer typing, respectively: strains identified in <italic>I. ricinus</italic> in Western Europe were termed <italic>B. garinii</italic> outer surface protein (Osp) A type 4 (Wilske et al., <xref ref-type="bibr" rid="B163">1996</xref>) whilst those found in <italic>I. persulcatus</italic> in Eastern Europe or Asia were termed <italic>B. garinii</italic> NT29-like strains (Korenberg et al., <xref ref-type="bibr" rid="B75">2002</xref>; Miyamoto and Masuzawa, <xref ref-type="bibr" rid="B107">2002</xref>; Masuzawa, <xref ref-type="bibr" rid="B99">2004</xref>).</p>
<p>It had previously been known that Western European <italic>B. garinii</italic> OspA types (i.e., types 3, 5&#x02013;8) (Wilske et al., <xref ref-type="bibr" rid="B163">1996</xref>; Fingerle et al., <xref ref-type="bibr" rid="B41">2008</xref>; Taragel&#x00027;ova et al., <xref ref-type="bibr" rid="B150">2008</xref>) utilize birds as reservoir hosts, while OspA type 4 strains use rodents as reservoir hosts (Hu et al., <xref ref-type="bibr" rid="B58">2001</xref>; Huegli et al., <xref ref-type="bibr" rid="B59">2002</xref>). In Asia, NT29 and related strains also comprised a rodent-associated ecotype within <italic>B. garinii</italic>, but their relationship to OspA type 4 strains from Europe remained unclear, as European and Asian <italic>B</italic>. <italic>garinii</italic> differed not only in their OspA pattern, but also showed differences in the RFLP pattern of the 5S-23S intergenic spacer (Masuzawa et al., <xref ref-type="bibr" rid="B100">2005</xref>). MLSA typing showed that both European and Asian rodent-associated ecotypes belonged to <italic>B. bavariensis</italic> (Takano et al., <xref ref-type="bibr" rid="B149">2011</xref>; Margos et al., <xref ref-type="bibr" rid="B98">2013</xref>; Scholz et al., <xref ref-type="bibr" rid="B141">2013</xref>). Throughout its very extensive geographic range in Eurasia <italic>B. bavariensis</italic> is associated only with small mammals, implying that a host switch occurred at some time in the past that allowed, or perhaps even was the cause of the divergence of <italic>B. bavariensis</italic> from <italic>B. garinii</italic>. Phylogenetic analysis provides evidence that the European and Asian <italic>B. bavariensis</italic> sp. nov. form sister clades which cluster next to <italic>B. garinii</italic> (Margos et al., <xref ref-type="bibr" rid="B96">2009</xref>, <xref ref-type="bibr" rid="B98">2013</xref>; Gatzmann et al., <xref ref-type="bibr" rid="B45">2015</xref>; <xref ref-type="fig" rid="F3">Figures 3</xref>, <xref ref-type="fig" rid="F4">4</xref>).</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Phylogeny of <italic>B. bavariensis</italic> from Asia and Europe. The tree was generated using chromosomal single nucleotide polymorphisms. Taxa included are <italic>B. bavariensis</italic> from <italic>I. persulcatus</italic> (Japan) and <italic>I. ricinus</italic> (Europe) dominated regions. The genetic homogeneity in European <italic>B. bavariensis</italic> stands in strong contrast with the genetic heterogeneity of <italic>B. bavariensis</italic> from Asia. <italic>B. garinii</italic> isolates were used as outgroup. The scale bars are expressed in units of substitution per site. With permission from Gatzmann et al. (<xref ref-type="bibr" rid="B45">2015</xref>), Ticks and Tick-borne Diseases 6, 344&#x02013;351.</p></caption>
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<sec>
<title>Vector Adaptation and Geographical Invasion</title>
<p>Previous investigations using RFLP analysis had suggested that strains of <italic>ospA</italic> type 4 (i.e., Western European <italic>B. bavariensis</italic>) were genetically highly homogenous (Marconi et al., <xref ref-type="bibr" rid="B91">1999</xref>), a finding that was confirmed using MLSA (Margos et al., <xref ref-type="bibr" rid="B96">2009</xref>) and NGS (Gatzmann et al., <xref ref-type="bibr" rid="B45">2015</xref>). The presence of extensive genetic variation within Asian strains of <italic>B. bavariensis</italic> (comparable in extent to that within <italic>B. garinii</italic> itself; <xref ref-type="fig" rid="F4">Figure 4</xref>) implies that the split between <italic>B. garinii</italic> and <italic>B. bavariensis</italic> took place relatively long ago, although clearly more recently than the original radiation of the <italic>B. burgdorferi</italic> s.l. complex as a whole (Becker et al., <xref ref-type="bibr" rid="B8">2016</xref>). The invasion-like range expansion of <italic>B. bavariensis</italic> into Europe, on the other hand, appears to have happened much more recently, and to have involved a selective sweep that imposed a severe bottleneck on genetic variation in the genome of the surviving European invaders (<xref ref-type="fig" rid="F4">Figure 4</xref>). Since Asian <italic>B. bavariensis</italic> are associated only with <italic>I. persulcatus</italic>, a tick species which does not occur in Western Europe, while European <italic>B. bavariensis</italic> are associated solely with the European species, <italic>I. ricinus</italic> (Postic et al., <xref ref-type="bibr" rid="B131">1997</xref>; Korenberg et al., <xref ref-type="bibr" rid="B75">2002</xref>; Masuzawa et al., <xref ref-type="bibr" rid="B100">2005</xref>; Fingerle et al., <xref ref-type="bibr" rid="B41">2008</xref>; Takano et al., <xref ref-type="bibr" rid="B149">2011</xref>; Geller et al., <xref ref-type="bibr" rid="B46">2013</xref>; Mukhacheva and Kovalev, <xref ref-type="bibr" rid="B109">2013</xref>, <xref ref-type="bibr" rid="B110">2014</xref>; Scholz et al., <xref ref-type="bibr" rid="B141">2013</xref>), it seems likely that colonization of Europe by the spirochete must have been coincident with, or driven by, a switch in its vector association.</p>
<p>Importantly, the genetic homogeneity of European <italic>B. bavariensis</italic>, the close genetic relationship of European and Asian <italic>B</italic>. <italic>bavariensis</italic> and the recent divergence from <italic>B. garinii</italic> have all now been confirmed by data derived from next generation sequencing and analyses of the core genome, the main chromosome and the two plasmids lp54 and cp26 (Gatzmann et al., <xref ref-type="bibr" rid="B45">2015</xref>; Becker et al., <xref ref-type="bibr" rid="B8">2016</xref>). In European <italic>B. bavariensis</italic> no more than 400 single nucleotide polymorphisms (SNPs) were found on the main chromosome between the most divergent isolates while approximately 10 times more chromosomal SNPs were noticed in Asian <italic>B. bavariensis</italic>, giving rise to the deep branching pattern seen in the phylogeny of the latter population (<xref ref-type="fig" rid="F4">Figure 4</xref>; Gatzmann et al., <xref ref-type="bibr" rid="B45">2015</xref>).</p>
<p>Analyses of the core genome (chromosome, lp54, and cp26) of European and Japanese <italic>B. bavariensis</italic> revealed genes that were under positive selection in the European population (Gatzmann et al., <xref ref-type="bibr" rid="B45">2015</xref>). Among those were two genes <italic>flhB</italic> (BG0275) and antigen S1 (BGA04) (a homolog of BBA05) which had previously been shown to be up-regulated under conditions that simulate vector conditions (Ojaimi et al., <xref ref-type="bibr" rid="B121">2003</xref>) or in feeding nymphs (Xu et al., <xref ref-type="bibr" rid="B167">2010</xref>). The results presented by Gatzmann et al. (<xref ref-type="bibr" rid="B45">2015</xref>) were based on short-read NGS data which did not allow complete assembly of all plasmids in <italic>B. bavariensis</italic> and thus our knowledge of the comparative genomics of plasmid encoded genes in this species remains incomplete. This is an avenue for future consideration.</p>
<p>In this context it is important to emphasize that there is so far no direct experimental evidence on the vector competence of different tick species for the different <italic>B. bavariensis</italic> populations. However, strong support for differential vector adaptation of European vs. Asian <italic>B. bavariensis</italic> populations comes from field studies. The occurrence of <italic>B. burgdorferi</italic> s.l. spirochetes in ticks from the European and Asian parts of Russia has been studied since the early 1980s, soon after the description of <italic>B. burgdorferi</italic> s.s. (Korenberg et al., <xref ref-type="bibr" rid="B75">2002</xref>). <italic>Ixodes ricinus, I. persulcatus</italic>, and <italic>I. trianguliceps</italic> ticks were used to culture <italic>Borrelia</italic>. Intriguingly, <italic>B. bavariensis</italic> (then designated as <italic>B. garinii</italic>) NT29-type strains were only ever isolated from <italic>I. persulcatus</italic> ticks and never from <italic>I. ricinus</italic> ticks, while <italic>B. afzelii</italic> and bird associated <italic>B. garinii</italic> were found in both tick species. Postic et al. (<xref ref-type="bibr" rid="B131">1997</xref>) concluded from this work that NT29-type strains (now correctly designated as Asian <italic>B. bavariensis</italic>) are associated only with <italic>I. persulcatus</italic>. Remarkably, in terms of vector adaptation, <italic>B. burgdorferi</italic> s.s., <italic>B. lusitaniae</italic>, and <italic>B. valaisiana</italic> were also found only in <italic>I. ricinus</italic>, and not in <italic>I. persulcatus</italic> (Korenberg et al., <xref ref-type="bibr" rid="B75">2002</xref>). Subsequent molecular studies conducted in Asia, Mongolia, Russia and Siberia all found only Asian type <italic>B. bavariensis</italic> in <italic>I. persulcatus</italic> (Masuzawa et al., <xref ref-type="bibr" rid="B100">2005</xref>; Takano et al., <xref ref-type="bibr" rid="B149">2011</xref>; Mukhacheva and Kovalev, <xref ref-type="bibr" rid="B109">2013</xref>, <xref ref-type="bibr" rid="B110">2014</xref>; Scholz et al., <xref ref-type="bibr" rid="B141">2013</xref>). The most compelling evidence yet for the contrasting vector association/adaptations of the European and Asian populations of <italic>B. bavariensis</italic> has now been provided by a study conducted in the overlapping zone of <italic>I. ricinus</italic> and <italic>I. persulcatus</italic> in Estonia (Geller et al., <xref ref-type="bibr" rid="B46">2013</xref>). These authors reported that Asian type <italic>B. bavariensis</italic> was associated only with <italic>I. persulcatus</italic>, and not with <italic>I. ricinus</italic>. Moreover, a European type of <italic>B. bavariensis</italic> has recently been found in <italic>I. ricinus</italic> in Latvia (Mercy Okeyo, NRZ Borrelia, personal communication).</p>
</sec>
</sec>
<sec id="s5">
<title><italic>Ixodes</italic> Vectors of <italic>B. Burgdorferi</italic> S.L.</title>
<p>Ticks with more generalist feeding behaviors serve as bridge vectors for agents of human Lyme borreliosis and are considered the most important vectors for <italic>Borrelia</italic>. They have&#x02014;for the most part&#x02014;distinct geographical distribution ranges and include <italic>I. pacificus</italic> (west of the Rocky Mountains) and <italic>I. scapularis</italic> (east of the Rocky Mountains&#x02014;principally the Northeast, Midwest, and Southeast regions of the USA) in North America, <italic>I. ricinus</italic> in Europe and <italic>I. persulcatus</italic> in Eastern Europe and Asia (<xref ref-type="fig" rid="F5">Figure 5</xref>; Swanson et al., <xref ref-type="bibr" rid="B147">2006</xref>).</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>Geographic distribution of main <italic>Borrelia</italic> vectors <italic>Ixodes persulcatus, Ixodes ricinus, Ixodes scapularis</italic>, and <italic>Ixodes pacificus</italic>. Note the overlapping region of <italic>I. persulcatus</italic> and <italic>I. ricinus</italic> (dark green zone indicated by an arrow). Modified after and re-used with permission from Swanson et al. (<xref ref-type="bibr" rid="B147">2006</xref>), Coinfections Acquired from Ixodes Ticks, Clin Microbiol Rev, 19, 708&#x02013;727. These ticks have generalist feeding behaviors and serve as bridge vectors for agents of human Lyme borreliosis and are considered the most important vectors for <italic>Borrelia</italic>. They have&#x02014;for the most part&#x02014;distinct geographical distribution ranges and include <italic>I. pacificus</italic> (west of the Rocky Mountains) and <italic>I. scapularis</italic> (east of the Rocky Mountains, Northeast, Midwest and Southeast) in North America, <italic>I. ricinus</italic> in Europe and <italic>I. persulcatus</italic> in Eastern Europe and Asia.</p></caption>
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<p>Experimental studies have shown that many <italic>Ixodes</italic> species are able to acquire <italic>Borrelia</italic> from an infected host and harbor live bacteria or bacterial DNA in the midgut trans-stadially (reviewed by Eisen and Lane, <xref ref-type="bibr" rid="B34">2002</xref>). But the ability to efficiently transmit <italic>Borrelia</italic> to new hosts varies greatly between <italic>Ixodes</italic> species: for example, the vector competence of <italic>I. muris</italic> was very poor for <italic>B. burgdorferi</italic> s.s., <italic>I. scapularis</italic>, and <italic>I. ricinus</italic> differ in their vector competence for <italic>B afzelii</italic> and <italic>B. burgdorferi</italic> s.s., and ticks other than <italic>Ixodes</italic> spp. are poor vectors for <italic>B. burgdorferi</italic> s.l. (reviewed by Lane et al., <xref ref-type="bibr" rid="B82">1994</xref>; Dolan et al., <xref ref-type="bibr" rid="B29">1997</xref>, <xref ref-type="bibr" rid="B30">1998</xref>, <xref ref-type="bibr" rid="B28">2000</xref>; Eisen and Lane, <xref ref-type="bibr" rid="B34">2002</xref>; Eisen et al., <xref ref-type="bibr" rid="B33">2003</xref>). Furthermore, and as noted above, the geographic distribution of <italic>Borrelia</italic> species such as <italic>B. valaisiana, B. spielmanii</italic>, and <italic>B. burgdorferi</italic> s.s. implies that <italic>I. persulcatus</italic> is not a vector for these <italic>Borrelia</italic> species (Postic et al., <xref ref-type="bibr" rid="B131">1997</xref>; Korenberg et al., <xref ref-type="bibr" rid="B75">2002</xref>; Bormane et al., <xref ref-type="bibr" rid="B12">2004</xref>; Masuzawa et al., <xref ref-type="bibr" rid="B100">2005</xref>).</p>
<p>So, what confers differential vector competence of <italic>Ixodes</italic> species on the various <italic>Borrelia</italic> species? The simple answer is that we do not know, but one can extrapolate from other arthropod-parasite systems (Beerntsen et al., <xref ref-type="bibr" rid="B9">2000</xref>; Lehane et al., <xref ref-type="bibr" rid="B84">2004</xref>; Molina-Cruz et al., <xref ref-type="bibr" rid="B108">2017</xref>) to conclude that genetically encoded traits of both bacterium and vector are likely to be important, probably including (1) <italic>Borrelia</italic> cell-surface molecules acting as ligands for receptor-molecules, conferring <italic>Borrelia</italic> resistance to tick anti-microbial defenses, or <italic>Borrelia</italic> factors that modulate the expression or efficacy of tick defenses, (2) tick physiology; (3) the tick&#x00027;s immune system, and (4) the tick microbiome. Of course, the balanced interplay between all these factors needs to be considered as none of them works in isolation and it has been shown that other microbes present in the tick&#x00027;s microbiome may manipulate the tick&#x00027;s immune system and <italic>vice versa</italic> (see below) (de la Fuente et al., <xref ref-type="bibr" rid="B26">2017</xref>).</p>
<sec>
<title><italic>Borrelia</italic> Genes</title>
<p>Although several <italic>Borrelia</italic> genes have been identified that are important for persistence of <italic>Borrelia</italic> in the tick or for receptor interaction, how these genes differ between species and which genes allow different <italic>Borrelia</italic> species to utilize certain tick vectors is unknown. To further characterize such genes and to pinpoint their involvement in differential vector compatibility will require comparative genomics studies of <italic>Borrelia</italic> species that utilize different tick species as vector. Gene upregulation in <italic>Borrelia</italic> during or following transmission to the vector has been demonstrated and several genes have been shown to be crucial for transmission to, or survival of, <italic>Borrelia</italic> in the vector (e.g., Pal and Fikrig, <xref ref-type="bibr" rid="B124">2010</xref>; Radolf et al., <xref ref-type="bibr" rid="B134">2012</xref>). A comprehensive study showed that 246 gene transcripts were upregulated and transcribed in <italic>Borrelia</italic> during or after a blood meal was taken by ticks; 88 of these were present in <italic>Borrelia</italic> taken up by both, larvae and nymphs, while 17 <italic>Borrelia</italic> transcripts were only found in <italic>Borrelia</italic> taken up by larvae during blood feeding (Iyer et al., <xref ref-type="bibr" rid="B63">2015</xref>). Although transcription does not equal presence of proteins, this study does suggest that some of these gene products are likely to be important for survival of <italic>Borrelia</italic> in the vector. In addition, studies on the gene expression regulation system RpoS identified 41 genes that are repressed in <italic>B. burgdorferi in vitro</italic> and under conditions representing the vertebrate host. Although a good number encoded hypothetical proteins, many of the identified genes were known to be important for survival in, and interaction with, the vector (Caimano et al., <xref ref-type="bibr" rid="B17">2019</xref>). Whether variations in these molecules contribute to differential vector competence needs to be further investigated.</p>
<p>Some molecules that have been shown to have a function within the tick vector include the Outer <underline>s</underline>urface <underline>p</underline>rotein <underline>A</underline> (OspA) which binds to the vector midgut molecule TROSPA (Pal et al., <xref ref-type="bibr" rid="B125">2004</xref>); BBE31 which binds to the vector molecule Tre31, a protein secreted by tick midgut epithelial cells (Zhang et al., <xref ref-type="bibr" rid="B169">2011</xref>); PdeB, a phosphodiesterase required for survival in, and transmission by, ticks; Lpm1, a surface molecule, depletion of which inhibits <italic>Borrelia</italic> in the vector (Koci et al., <xref ref-type="bibr" rid="B72">2018</xref>); BB0365, BB0690, BptA, lp6.6, BBk32 are all required for persistence in the tick, while antigen P35 (BBA64) may play a role in tick-to-host transmission (Fikrig et al., <xref ref-type="bibr" rid="B39">2000</xref>; Radolf et al., <xref ref-type="bibr" rid="B134">2012</xref>; Brandt et al., <xref ref-type="bibr" rid="B13">2014</xref>). In a recent study using transposon-based gene interruption approach, &#x0003E;100 genes were shown to be involved in <italic>Borrelia</italic> survival in larval ticks (Phelan et al., <xref ref-type="bibr" rid="B129">2019</xref>). These included previously reported genes and novel genes important for tick survival of <italic>Borrelia</italic>. For 46 of these genes complete absence of transmission was observed after knockout, while for 56 other genes a drastic reduction (90%) of transmission occurred. Of the genes inducing complete interruption of transmission 22% were predicted lipoproteins, but for 41% was no predicted function.</p>
</sec>
<sec>
<title>Tick Physiology</title>
<p>From the vector&#x00027;s point of view, it is likely that physiological differences between tick species have an impact on vector competence. Generally, <italic>Ixodes</italic> species are three-host ticks and as such, both biotic and abiotic factors influence where they can survive. On-host feeding periods are short compared to off-host periods, which include periods of diapause (genetically programmed) or quiescence (due to unfavorable conditions). Abiotic factors that influence tick physiology include temperature, humidity, and day-length, all of which have an impact on host seeking phenology, success of egg hatching, overwintering of immature and adult stages. During off-host periods, hot conditions may result in overheating, freezing in sub-zero temperatures, or dehydration in dry conditions. Such conditions require ticks to seek refuges for cooling down or re-hydration and appropriate (micro-)habitats with suitable vegetation or leaf litter layer therefore play an important role in the tick&#x00027;s life cycle (Medlock et al., <xref ref-type="bibr" rid="B105">2013</xref>; Eisen et al., <xref ref-type="bibr" rid="B35">2016</xref>). <italic>Ixodes ricinus</italic> and <italic>I. persulcatus</italic> overlap in a region ranging from Estonia to Russia and, although some fluctuation of populations may occur (Filipova, <xref ref-type="bibr" rid="B40">2017</xref>), the general geographic range distribution of the two tick species persists. Differences in host seeking phenology due to differences in tick physiology may affect feeding success in such overlapping zones and it is conceivable that this has an influence on vector competence (Korenberg et al., <xref ref-type="bibr" rid="B74">1991</xref>, <xref ref-type="bibr" rid="B75">2002</xref>; Korenberg, <xref ref-type="bibr" rid="B73">1995</xref>; Alekseev et al., <xref ref-type="bibr" rid="B2">1998</xref>). An impressive example of changed host-seeking phenology was reported for <italic>I. scapularis</italic> by Gatewood et al. (<xref ref-type="bibr" rid="B44">2009</xref>). <italic>Ixodes scapularis</italic> populations in Midwestern regions of the USA showed more seasonal synchrony of nymphal and larval feeding pattern. Investigations of <italic>B. burgdorferi s.s</italic>. infection pattern revealed that lineages which carried the 16S-23S rRNA intergenic spacer restriction fragment length polymorphism sequence type 1 were more frequently found in northeastern <italic>Ixodes</italic> populations (Gatewood et al., <xref ref-type="bibr" rid="B44">2009</xref>). There are several excellent reviews on these topics (Lindgren and Jaenson, <xref ref-type="bibr" rid="B86">2006</xref>; Ogden et al., <xref ref-type="bibr" rid="B118">2006</xref>, <xref ref-type="bibr" rid="B119">2013b</xref>; Medlock et al., <xref ref-type="bibr" rid="B105">2013</xref>; Eisen et al., <xref ref-type="bibr" rid="B35">2016</xref>) and it would go beyond the scope of this review to expand further on this.</p>
</sec>
<sec>
<title>Tick Immunity</title>
<p>An attractive hypothesis is that tick immunity plays a role in differential vector competence. In recent years progress has been made in recognizing the complexity of the tick&#x00027;s immune system (reviewed in Hajdusek et al., <xref ref-type="bibr" rid="B51">2013</xref>; Kitsou and Pal, <xref ref-type="bibr" rid="B71">2018</xref>) and it has been shown that <italic>Ixodes</italic> spp. possess a number of immune effectors and modulators such as recognition molecules, among them thioester-containing proteins (T-TEPS, that serve as lectins labeling cells for immune attack), phagocytotic hemocytes, defensins, lysozymes, antimicrobial peptides, a dityrosine network (DTN), and (atypical) signaling pathways. The signaling pathways regulating the immune system include Toll, IMD (Immunodeficiency) and JAK-STAT (Janus Kinase/Signal Transducers and Activators of Transcription) as well as an indirect, cross-species signaling pathway that recognizes the cytokine interferon gamma in the blood of the vertebrate host (Johns et al., <xref ref-type="bibr" rid="B66">2001</xref>; Hajdusek et al., <xref ref-type="bibr" rid="B51">2013</xref>; Yang et al., <xref ref-type="bibr" rid="B168">2014</xref>; Sonenshine and Macaluso, <xref ref-type="bibr" rid="B146">2017</xref>; Urbanova et al., <xref ref-type="bibr" rid="B156">2017</xref>). RNA interference studies on genes involved in the tick&#x00027;s immune response have shown that depletion of expression may lead to suppression of <italic>Borrelia</italic> colonization in ticks (Narasimhan et al., <xref ref-type="bibr" rid="B114">2017</xref>) suggesting that <italic>Borrelia</italic> can exploit tick molecules to its own advantage. In addition, the induction by <italic>Borrelia</italic> in <italic>I. scapularis</italic> of a protein with a Reeler domain (PIXR) limits bacterial biofilm formation in the tick&#x00027;s gut, thereby preventing alterations in the microbiome and promoting colonization by <italic>Borrelia</italic> (Narasimhan et al., <xref ref-type="bibr" rid="B114">2017</xref>). Thus, it is highly likely that immune effectors play an important role in determining the competence of <italic>Ixodes</italic> species for <italic>Borrelia</italic> species and <italic>vice versa</italic>.</p>
</sec>
<sec>
<title>The Microbiome of Ticks</title>
<p>In the past decade much attention has been invested to study the tick&#x00027;s microbiome in more detail. These studies have shown that the microbiome of ticks consists of microorganisms associated with the outer surface of ticks, the gut microbiome, and endosymbiontic bacteria (reviewed by Narasimhan and Fikrig, <xref ref-type="bibr" rid="B113">2015</xref>). Initial studies on different <italic>Ixodes</italic> species (e.g., <italic>I. scapurlaris, I. ricinus, I. pacificus</italic>, and <italic>I. persulcatus</italic>) using high throughput sequencing methods have discovered a whole range of bacterial taxa that are associated with ticks. Some studies found differences in bacterial genera contributing to the tick microbiome between geographical locations, tick species and stages (nymphs, female, and males) (Van Treuren et al., <xref ref-type="bibr" rid="B157">2015</xref>), but others did not (Clow et al., <xref ref-type="bibr" rid="B25">2018</xref>). In most studies bacterial genera were found that constitute known tick symbionts like <italic>Coxiella, Midichloria, Francisella, Wolbachia, Cardinium, Arsenophonus, Spiroplasma, Rickettsia, Rickettsiella</italic>, and <italic>Lariskella</italic> (Benson et al., <xref ref-type="bibr" rid="B10">2004</xref>; Carpi et al., <xref ref-type="bibr" rid="B18">2011</xref>; Abraham et al., <xref ref-type="bibr" rid="B1">2017</xref>; Bonnet et al., <xref ref-type="bibr" rid="B11">2017</xref>; Mukhacheva and Kovalev, <xref ref-type="bibr" rid="B111">2017</xref>; Swei and Kwan, <xref ref-type="bibr" rid="B148">2017</xref>). Recently in a more refined approach, dissected tick tissues of questing <italic>I. scapularis</italic> were used to determine what constitutes the &#x0201C;internal&#x0201D; microbiome as opposed to the &#x0201C;surface&#x0201D; microbiome (Ross et al., <xref ref-type="bibr" rid="B139">2018</xref>). This showed that the gut microbiome of <italic>I. scapularis</italic> was of limited diversity in the majority of adults being dominated by <italic>Rickettsia</italic> and <italic>B. burgdorferi</italic> s.s. Only a minority of tick samples contained high microbiome diversity, harboring bacteria of the genera <italic>Bacillus</italic> and <italic>Pseudomonas</italic>, and the family Enterobacteriaceae in their midguts.</p>
<p>The distribution of microbial symbionts, in hybrid ticks in the overlapping zone of <italic>I</italic>. <italic>ricinus</italic> and <italic>I. persulcatus</italic> was very interesting. The endosymbiont <italic>Midichloria mitochondrii</italic> (Sassera et al., <xref ref-type="bibr" rid="B140">2006</xref>) was found to 100% in female <italic>I. ricinus</italic> ticks. A different endosymbiont, <italic>Lariskella arthropodarum</italic>, was identified in <italic>I. persulcatus</italic> (Mediannikov et al., <xref ref-type="bibr" rid="B104">2004</xref>; Mukhacheva and Kovalev, <xref ref-type="bibr" rid="B111">2017</xref>). Hybrid progeny of these ticks harbored only the respective symbionts of their mothers underpinning the specificity of association (Mukhacheva and Kovalev, <xref ref-type="bibr" rid="B111">2017</xref>).</p>
<p>As pointed out below, hybrid offspring of different tick vector species such as <italic>I. ricinus</italic> and <italic>I. persulcatus</italic> in regions where these species occur in sympatry may offer an opportunity for vector switching. Such hybrid ticks will have genetic inheritance from both parents and receptor molecules in the midgut or molecules of the immune system may phenotypically represent both parents, which we speculate might allow the survival of an invading <italic>Borrelia</italic> species and facilitate its adaptation to a new vector.</p>
</sec>
</sec>
<sec id="s6">
<title>Possible Mechanisms of Vector Adaptation</title>
<p>We suggest that <italic>B. bavariensis</italic> is an excellent model in which to examine the underlying mechanisms of invasion-like geographic range expansion of vector-transmitted prokaryotic parasites including vector-switching and the identities of genes underlying vector-adaptation.</p>
<p>Coincident with their colonization of Europe, it appears that Asian <italic>B. bavariensis</italic> strains that had previously been associated exclusively with the tick <italic>I. persulcatus</italic> acquired the ability to use <italic>I. ricinus</italic> as a vector. This may be because the two ixodid ticks had been previously kept apart by a landscape or climatic barrier, perhaps associated with the extensive glaciation of Northern Europe. On the removal of this barrier, adaptation to the new vector would have become possible. But it may also be the case that the distributions of the two tick species had always overlapped to some extent, and that utilization by Asian <italic>B. bavariensis</italic> of <italic>I. ricinus</italic> was prevented by the lack of suitable adaptation. The existence of a marked genetic bottleneck in the European population of <italic>B. bavariensis</italic> certainly argues that adaptation to the new vector was not easily accomplished, and indeed may have taken place on only a single occasion.</p>
<p>In case of a barrier between tick species, the simplest hypothesis would be that <italic>I. ricinus</italic> constituted an unrealized (because unavailable) dimension within the Hutchinsonian niche of <italic>B. bavariensis</italic>; this tick would now have revealed itself to be a potential vector, and that no adaptation was necessary to allow <italic>B. bavariensis</italic> to colonize the new tick species. This then allowed the spirochete to invade the whole of the geographic range of <italic>I. ricinus</italic>.</p>
<p>But such an evolution-free process does not accord well with the evidence: without the action of natural selection, the realization of the previously unoccupied <italic>I. ricinus</italic> part of the <italic>B. bavariensis</italic> fundamental niche would have left no genomic signature, and the extensive genetic variation present within the original Asian population of <italic>B. bavariensis</italic> would have continued to exist within the strains that now invaded Europe.</p>
<p>In fact, as we have seen, invasion of Europe by <italic>B. bavariensis</italic> was accompanied by intense genome-wide selection. The resulting population bottleneck led to the massive expansion of a population of closely related spirochetes that contained very little genetic variation (<xref ref-type="fig" rid="F4">Figure 4</xref>). Two hypothetical explanations for such an event (not necessarily mutually exclusive) can be considered.</p>
<p>One of these explanations is that there was a pre-existing clade within the Asian population of <italic>B. bavariensis</italic>, which in addition to its previous association with <italic>I. persulcatus</italic> was (unlike the rest of the population) to at least some extent genetically pre-adapted to utilize <italic>I. ricinus</italic> as a vector; on encountering <italic>I. ricinus</italic> for the first time, simple population dynamic processes would have led naturally to the expansion of such a clade. But if this were the case, then why did such a pre-adaptation exist, and what maintained it within a population that had never previously come into contact with <italic>I. ricinus</italic>? Moreover, if the selective sweep that so strongly shaped the genome of the clade that invaded Europe was not the result of selection imposed by the vector switch itself, why did this pre-adapted clade contain so little genetic variation? The only possibility is that colonization of <italic>I. ricinus</italic> was made possible by an evolutionary event that was the coincidental consequence of an unrelated selective force and which did impose the selective sweep for unrelated reasons. But we suggest that under this scenario it is very hard to account for the very strong genetic bottleneck evidently experienced during vector&#x02013;switching in <italic>B. bavariensis</italic>.</p>
<p>The alternative is that no such pre-adaptation was present, and that utilization of <italic>I. ricinus</italic> as a vector required the recruitment of one or more new genetic variants. We now consider two different scenarios for the acquisition of these adaptive genes.</p>
<sec>
<title>Competition or Collaboration?</title>
<p>Our first suggestion is that the vector-switch required a mixed infection within a tick between <italic>B. bavariensis</italic> and some other <italic>Borrelia</italic> species that was already adapted to use <italic>I. ricinus</italic> as a vector.</p>
<p>As noted above, different <italic>Borrelia</italic> species can be found in the same <italic>Ixodes</italic> tick in mixed infections; the different spirochetes may have been acquired by the tick together at the same time when feeding from a multiply-parasitized host. Whilst standard niche theory would predict that competition between the parasite species would occur in such a scenario, it might also be envisaged that both species may benefit from the secretion by just one of the two species of adaptive &#x0201C;public goods&#x0201D; goods (i.e., secreted proteins that are beneficial to both parasites under these conditions). We note that the evolutionary outcomes of such interactions between parasites in multiple infections may be complex (Alizon and Lion, <xref ref-type="bibr" rid="B3">2011</xref>).</p>
<p>Thus, a simple model for <italic>Borrelia</italic> adaptation to a new vector would be that co-infection of a single tick with a <italic>Borrelia</italic> species already adapted to transmission by <italic>I. ricinus</italic> (e.g., <italic>B. garinii, B. afzelii</italic>) would enable not only that species, but also <italic>B. bavariensis</italic> to attach to the midgut of the new tick vector, and/or to be protected against immune attack of the new vector, and/or to be successfully transmitted by the new vector to the reservoir host (<xref ref-type="fig" rid="F6">Figure 6</xref>). This would have enabled <italic>B. bavariensis</italic> to colonize the new vector, despite lacking the necessary adaptive genes within its own genome. This would not in itself have been enough to make a full transition to the new vector. Importantly, however, the opportunity for <italic>B. bavariensis</italic> to exploit adaptive genes resident in another <italic>Borrelia</italic> species during mixed infections in this way would also provide an opportunity whereby those same genes could eventually be acquired by the invading <italic>Borrelia</italic> strain. This could occur via horizontal gene transfer (HGT) from the other co-infecting species of <italic>Borrelia</italic>. Phylogenomic studies of <italic>Borrelia</italic> plasmids have revealed that HGT is common for genes on some plasmids (Qiu et al., <xref ref-type="bibr" rid="B133">2004</xref>; Casjens et al., <xref ref-type="bibr" rid="B21">2012</xref>, <xref ref-type="bibr" rid="B20">2017</xref>, <xref ref-type="bibr" rid="B19">2018</xref>).</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Public goods vector adaptation hypothesis. In this scenario, two <italic>Borrelia</italic> species that are present in the same vector tick may both benefit from molecules that are secreted by the species that is adapted to this vector species. These molecules may protect both species against adverse conditions encountered during the transmission process in the vector. However, for adaptation to the new vector to be accomplished, appropriate genes permitting adaptation need ultimately to be acquired.</p></caption>
<graphic xlink:href="fevo-07-00401-g0006.tif"/>
</fig>
<p>Although it is likely that several genes and gene products are involved in the stepwise adaptation of <italic>Borrelia</italic> spirochetes to their journey through the vector tick, it should be remembered that every <italic>Borrelia</italic> species is already well-adapted to utilize at least one species of tick. It is thus conceivable that only one of these steps would actually be deficient in the interaction between <italic>B. bavariensis</italic> and <italic>I. ricinus</italic>, much improving the probability that co-infection with another already-adapted <italic>Borrelia</italic> species would enable <italic>B. bavariensis</italic> to colonize and exploit the new vector species. Since the acquisition of a single new gene by HGT could theoretically confer the ability to colonize a new vector species with the help of a co-infecting agent, the probability of the evolution of a complete vector switch would also be enhanced. If the necessary HGT event was rare, then this would explain why all <italic>B. bavariensis</italic> strains that utilize <italic>I. ricinus</italic> as a vector also show evidence of a historic selective sweep.</p>
</sec>
<sec>
<title>Hybrid Ticks?</title>
<p>Our second, speculative suggestion is that adaptation to a new vector required the presence of hybrid <italic>I. persulcatus</italic>-<italic>I. ricinus</italic> ticks that allowed the parental strain of <italic>B. bavariensis</italic> to complete its life cycle. Although the coexistence of the two tick vector species in the Baltic/Western Russian zone would have led to the continually repeated introduction of Asian-type <italic>B. bavariensis</italic> into <italic>I. ricinus</italic> ticks, these spirochetes may have been unable to survive in the tick, or (just as likely) were unable successfully to enter the tick&#x00027;s salivary glands and thus to be transferred into the small mammal reservoir hosts utilized by <italic>I. ricinus</italic>.</p>
<p>The two tick species <italic>I. ricinus</italic> and <italic>I. persulcatus</italic> have an overlapping zone in Estonia, Latvia and Western Russia (<xref ref-type="fig" rid="F5">Figure 5</xref>; Swanson et al., <xref ref-type="bibr" rid="B147">2006</xref>). In such overlapping zones cross-species mating occurs, leading to hybrid offspring that likely possess phenotypic traits of both parents. Cross-mating has not only observed between <italic>I. ricinus</italic> and <italic>I. persulcatus</italic> but also between <italic>I. persulcatus</italic> and <italic>I. pavlovskyi</italic> (Balashov Iu et al., <xref ref-type="bibr" rid="B6">1998</xref>; and references therein Kovalev et al., <xref ref-type="bibr" rid="B77">2015</xref>, <xref ref-type="bibr" rid="B76">2016</xref>) and between <italic>I. scapularis</italic> and <italic>I. cookei</italic> in North America (Patterson et al., <xref ref-type="bibr" rid="B126">2017</xref>) suggesting that cross-mating between tick species may be more frequent than once thought.</p>
<p>The presence of hybrid ticks might be a predisposing factor for <italic>Borrelia</italic> vector -switching. In the Eurasian <italic>I. ricinus-I. persulcatus</italic> hybrid zone, up to 13% of ticks have been found to be hybrids (Kovalev et al., <xref ref-type="bibr" rid="B76">2016</xref>). Such hybrids presumably arise afresh in each generation through cross-species mating, but it is also possible that hybrids might themselves cross with either parental species for a limited number of generations (Kovalev et al., <xref ref-type="bibr" rid="B76">2016</xref>). Although it has been considered that hybrid offspring produced under laboratory conditions are sterile (Bugmyrin et al., <xref ref-type="bibr" rid="B15">2015</xref>, <xref ref-type="bibr" rid="B14">2016</xref>) the introgression of genes in natural populations suggests that hybrid offspring of these two tick species are at least sometimes fertile (Kovalev et al., <xref ref-type="bibr" rid="B76">2016</xref>). Whether or not hybrid ticks have appreciable fertility might not matter much as far as vector-switching goes, since even sterile hybrid ticks can probably transmit <italic>Borrelia</italic>.</p>
<p>The significance of tick hybridization for vector switching is that it would allow &#x0201C;mixed&#x0201D; infections to occur in which <italic>Borrelia</italic> specifically adapted to one tick species can come into intimate contact with another <italic>Borrelia</italic> species specifically adapted to a different tick vector. This would permit the exchange of bacterial genes conferring colonizing ability between the two <italic>Borrelia</italic> species, which are not normally able to utilize the &#x0201C;wrong&#x0201D; host (as is the case with <italic>B. afzelii</italic> adapted to <italic>I. ricinus</italic>, and Asian populations of <italic>B. bavariensis</italic> adapted to <italic>I. persulcatus</italic>) This is illustrated in <xref ref-type="fig" rid="F7">Figure 7</xref>.</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Plasmid exchange vector adaptation hypothesis. This hypothesis supposes that bacterial plasmid exchange may take place inside a vector tick that harbors two different <italic>Borrelia</italic> species. It may be particularly easy for a <italic>Borrelia</italic> to adapt to a new environment in a hybrid tick because it will express midgut receptor or immune related proteins from both parents. For plasmid exchange to happen, it is necessary for both species to be present in the same place and at the same time. Even if one of the species is killed (if the tick feeds on a non-permissive host for one of the species), plasmid transfer may still happen. If an Asian strain of <italic>B. bavariensis</italic> (normally dependent on <italic>I. persulcatus</italic> as a vector) acquired one or more plasmids from a species of spirochete, for example <italic>B. afzelii</italic>, that enabled it to colonize the European tick <italic>I. ricinus</italic>, then the vector switch would be achieved.</p></caption>
<graphic xlink:href="fevo-07-00401-g0007.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="conclusions" id="s7">
<title>Conclusion</title>
<p>In this review we have described ecological factors that are important for geographic invasion by tick-borne bacterial pathogens. To identify factors that make tick-borne parasites potentially &#x0201C;invasive,&#x0201D; we focused on the medically important tick-borne bacteria, the Lyme borreliosis group of spirochetes (reportedly the most frequent source of arthropod-borne human infection in the northern hemisphere, e.g., Bacon et al., <xref ref-type="bibr" rid="B5">2008</xref>; Medlock et al., <xref ref-type="bibr" rid="B105">2013</xref>). We explored the ecological niche concept to explain the importance of hosts and vectors in limiting geographic ranges of these bacteria.</p>
<p>We scrutinized data reporting on vector interactions by the Lyme borreliosis spirochete and identify <italic>B. bavariensis</italic> as a paradigm case of geographical invasion of a tick-borne pathogen. In doing so, we provide a new perspective as we identify differential vector competence as one important factor for invasion into novel geographic regions by tick-borne pathogens. Our discussion highlights significant trends and areas for potential future research such as:</p>
<list list-type="simple">
<list-item><p>&#x027A2; Obtaining direct experimental evidence for vector competence of <italic>I. ricinus</italic> and <italic>I. persulcatus</italic> for the respective <italic>B. bavariensis</italic> populations through transmission studies.</p></list-item>
<list-item><p>&#x027A2; Different clinical manifestations have been reported from Asia and Europe (Wilske et al., <xref ref-type="bibr" rid="B164">1993</xref>, <xref ref-type="bibr" rid="B163">1996</xref>; Takano et al., <xref ref-type="bibr" rid="B149">2011</xref>). Targeted clinical studies could reveal whether the vector switch may have had an impact on pathogenicity or tissue tropism of <italic>B. bavariensis</italic>.</p></list-item>
<list-item><p>&#x027A2; NGS with long read methods to allow proper assembly of plasmids in <italic>B. bavariensis</italic> and <italic>B. garinii</italic>. So far there is only one <italic>B. garinii</italic> isolate with the completed set of plasmids. There are two Asian <italic>B. bavariensis</italic> for which plasmids are available in BorreliaBase.org. For European <italic>B. bavariensis</italic> we have sequenced two whole genomes using long-read methods permitting the complete assembly of all plasmids but undoubtedly several other genomes need to be sequenced to get better ideas of plasmid presence/absence, plasmid structure.</p></list-item>
<list-item><p>&#x027A2; Comparative analysis of whole genomes including the whole array of plasmids.</p></list-item>
</list>
<p>Molecular genomics has made major advances in recent years and <italic>Ixodes</italic> genomes are now being sequenced, and our review points to a research area that will be important in providing new insights in vector-parasite interactions which can be used for developing new prophylactic strategies and for scarce public health resources to be allocated with maximal effect.</p>
</sec>
<sec id="s8">
<title>Author Contributions</title>
<p>GM and VF experts in tick-borne pathogens, manuscript conceptualization, literature search, and writing of manuscript. SR expert in evolution and ecology, manuscript conceptualization, literature search, and writing of manuscript.</p>
<sec>
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The reviewer, SM, declared a past collaboration with one of the authors, GM, to the handling editor.</p>
</sec>
</sec>
</body>
<back>
<ack><p>The authors gratefully acknowledge Sabrina Hepner and Durdica Marosevic for useful comments on the manuscript. The final version benefitted from the constructive criticism of two anonymous referees. The National Referenz Centre for Borrelia at the Bavarian Health and Food Safety Authority, Oberschleissheim, Germany is funded by the Robert-Koch-Institute, Berlin, Germany.</p>
</ack>
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