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ORIGINAL RESEARCH article

Front. Ecol. Evol.
Sec. Biogeography and Macroecology
Volume 12 - 2024 | doi: 10.3389/fevo.2024.1328569

Global diversity and biogeography of Lyophyllum inferred from amplicon datasets Provisionally Accepted

  • 1Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, China
  • 2College of Plant Protection, Jilin Agriculture University, China
  • 3Key Laboratory of Applied Statistics of MOE, School of Mathematics and Statistics, Northeast Normal University, China
  • 4Information Center, Jilin Agricultural University, Changchun, China, China

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Lyophyllum consists of rare edible and medicinal mushrooms. Considering this group’s economic and ecological significance, understanding its biodiversity could be strategically important. Our analysis involved an extensive examination of publicly available ITS sequences from NCBI-GenBank and fungal amplicon sequencing data obtained from NCBI-SRA. At a 98% sequence simi-larity level, we deliminated 88 Lyophyllum OTUs, 49 of which were not categorized as ‘known spe-cies’. The diversity of Lyophyllum is predominantly concentrated in the Northern Hemisphere and tends to display endemic distribution, and Europe is particularly notable for its high diversity of Ly-ophyllum. Given the escalating volume of data produced by amplicon sequencing, employing the amplicon dataset can facilitate an accurate survey of species diversity in Lyophyllum taxonomy. By using data from amplicon datasets, the fieldwork time and research funding for taxonomists can be saved, thereby significantly advancing the progress of the entire field of biodiversity research.

Keywords: Amplicon sequencing, geographic, Global diversity, internal transcribed spacer, Lyophyllum

Received: 17 Nov 2023; Accepted: 13 May 2024.

Copyright: © 2024 Wei, Qi, Zhang, Li, Peng and Wang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence:
Mx. Zhanwu Peng, Information Center, Jilin Agricultural University, Changchun, China, Changchun, Hebei Province, China
Mx. Qi Wang, Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, Jilin Province, China