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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fgene.2014.00343</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>General Commentary Article</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Response to commentary on &#x0201C;Examples of overlooking common sense solutions: the domestication gene and selection against mortality&#x0201D;</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Bijma</surname> <given-names>P.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://community.frontiersin.org/people/u/30631"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Muir</surname> <given-names>W. M.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Ellen</surname> <given-names>E. D.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Animal Breeding and Genomics Centre, Wageningen University</institution> <country>Wageningen, Netherlands</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Animal Sciences, Purdue University</institution> <country>West Lafayette, IN, USA</country></aff>
<author-notes>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: <email>piter.bijma&#x00040;wur.nl</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Live stock Genomics, a section of the journal Frontiers in Genetics.</p></fn>
<fn fn-type="edited-by"><p>Edited by: Wendy Mercedes Rauw, Instituto Nacional de Investigaci&#x000F3;n y Tecnolog&#x000ED;a Agraria y Alimentaria, Spain</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Wendy Mercedes Rauw, Instituto Nacional de Investigaci&#x000F3;n y Tecnolog&#x000ED;a Agraria y Alimentaria, Spain; Simon Turner, Scotland&#x00027;s Rural College, UK</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>30</day>
<month>09</month>
<year>2014</year>
</pub-date>
<pub-date pub-type="collection">
<year>2014</year>
</pub-date>
<volume>5</volume>
<elocation-id>343</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>08</month>
<year>2014</year>
</date>
<date date-type="accepted">
<day>12</day>
<month>09</month>
<year>2014</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2014 Bijma, Muir and Ellen.</copyright-statement>
<copyright-year>2014</copyright-year>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<related-article id="RA1" related-article-type="commentary-article" journal-id="Front Genet" journal-id-type="nlm-ta" vol="5" page="266" xlink:href="25147558" ext-link-type="pubmed">A commentary on <article-title>Examples of overlooking common sense solutions: the domestication gene and selection against mortality</article-title> by Van Rooijen, J. (2014). Front. Genet. 5:266. doi: 10.3389/fgene.2014.00266</related-article>
<kwd-group>
<kwd>indirect genetic effects</kwd>
<kwd>animal welfare</kwd>
<kwd>laying hens</kwd>
<kwd>cannibalism</kwd>
<kwd>quantitative genetics</kwd>
<kwd>breeding</kwd>
</kwd-group>
<counts>
<fig-count count="0"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="6"/>
<page-count count="1"/>
<word-count count="713"/>
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</article-meta>
</front>
<body>
<p>In a commentary in Frontiers, Van Rooijen (<xref ref-type="bibr" rid="B6">2014</xref>) states: &#x0201C;Today the developments in genetics are exciting. Perhaps this explains why geneticists sometimes seem to overlook common sense solutions. One example of this is the selection experiment done by Bijma et al. (<xref ref-type="bibr" rid="B2">2007a</xref>,<xref ref-type="bibr" rid="B1">b</xref>). &#x02026;&#x02026;As a result their selection seemed not very efficient.&#x0201D; In those two papers, however, we do not report a selection experiment. The first paper presents general quantitative genetic theory, showing how interactions among individuals alter heritable variation in traits, and how this can affect response to selection. The second paper presents general methodology to estimate the quantitative genetic parameters for such traits, and illustrates this methodology using a population of laying hens showing high mortality due to pecking behavior. Neither of those papers report results of a selection experiment.</p>
<p>For the specific case of feather pecking, Van Rooijen suggests that the methodology would rest on the assumption that feather pecking results from aggression. This is not true. The strength of the methodology is that it captures the full heritable variance in the trait, irrespective of the underlying mechanism. Hence, for mortality due to pecking, the method captures both the actor component originating from the individual performing the pecking behavior and the victim component, as well as their covariance. These components are identified statistically from the covariances between trait values of relatives and their social partners, without any assumption on the underlying mechanisms. The method produces optimal breeding values, given the genetic parameters. Results of selection experiments based on the theory, presented in other papers (Muir, <xref ref-type="bibr" rid="B5">1996</xref>; Muir et al., <xref ref-type="bibr" rid="B4">2013</xref>; Ellen et al., <xref ref-type="bibr" rid="B3">2014</xref>), confirm the efficiency of the proposed methodology.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<ref-list>
<title>References</title>
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</back>
</article>
