AUTHOR=Fransen Floris , Sahasrabudhe Neha M. , Elderman Marlies , Bosveld Margaret , El Aidy Sahar , Hugenholtz Floor , Borghuis Theo , Kousemaker Ben , Winkel Simon , van der Gaast-de Jongh Christa , de Jonge Marien I. , Boekschoten Mark V. , Smidt Hauke , Schols Henk A. , de Vos Paul TITLE=β2→1-Fructans Modulate the Immune System In Vivo in a Microbiota-Dependent and -Independent Fashion JOURNAL=Frontiers in Immunology VOLUME=Volume 8 - 2017 YEAR=2017 URL=https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2017.00154 DOI=10.3389/fimmu.2017.00154 ISSN=1664-3224 ABSTRACT=It has been shown in vitro that only specific dietary-fibers contribute to immunity but studies in vivo are not conclusive. Here we investigated degree of polymerization (DP) dependent effects of β2→1-fructans on immunity via microbiota dependent and independent effects. To this end, conventional or germ-free mice received short or long-chain β2→1-fructan for 5 days. Immune cell populations in the spleen, mesenteric lymph nodes (MLN), and Peyer’s patches (PPs) were analyzed with flow cytometry, genome-wide gene expression in the ileum was measured with microarray, and gut microbiota composition was analyzed with 16S rRNA sequencing of fecal samples. We found that β2→1-fructans modulated immunity by both microbiota and microbiota independent effects. Moreover, effects were dependent on the chain-length of the β2→1-fructans type polymer. Both short and long-chain β2→1-fructans enhanced T-helper 1 cells in Peyer’s patches, whereas only short-chain β2→1-fructans increased regulatory T cells and CD11b-CD103- DCs in the MLN. A common feature after short and long-chain β2→1-fructan treatment was enhanced Fut2 expression and other IL-22 dependent genes in the ileum of conventional mice. These effects were not associated with shifts in gut microbiota composition, or altered production of short-chain fatty acids. Both short and long-chain β2→1-fructans also induced immune effects in germ free animals, demonstrating direct effect independent from the gut microbiota. Also, these effects were dependent on the chain-length of the β2→1-fructans. Short-chain β2→1-fructan induced lower CD80 expression by CD11b-CD103- DCs in PPs, whereas long-chain β2→1-fructan specifically modulated antibody production by B cells in germ-free mice. In conclusion, support of immunity is determined by the chemical structure of β2→1-fructans and is partially microbiota-independent.