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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Immunol.</journal-id>
<journal-title>Frontiers in Immunology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Immunol.</abbrev-journal-title>
<issn pub-type="epub">1664-3224</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fimmu.2021.753978</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Immunology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Monogenic Adult-Onset Inborn Errors of Immunity</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Staels</surname>
<given-names>Frederik</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Collignon</surname>
<given-names>Tom</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1432784"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Betrains</surname>
<given-names>Albrecht</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1013299"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gerbaux</surname>
<given-names>Margaux</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1438075"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Willemsen</surname>
<given-names>Mathijs</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Humblet-Baron</surname>
<given-names>Stephanie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liston</surname>
<given-names>Adrian</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/21275"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Vanderschueren</surname>
<given-names>Steven</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1082248"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Schrijvers</surname>
<given-names>Rik</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/382135"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Microbiology, Immunology and Transplantation, Laboratory of Adaptive Immunology</institution>, <addr-line>KU Leuven, Leuven</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Microbiology, Immunology and Transplantation, Allergy and Clinical Immunology Research Group, KU Leuven</institution>, <addr-line>Leuven</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Faculty of Medicine, KU Leuven</institution>, <addr-line>Leuven</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of General Internal Medicine, University Hospitals Leuven</institution>, <addr-line>Leuven</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical Infectious and Inflammatory Disease, KU Leuven</institution>, <addr-line>Leuven</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Vlaams Instituut voor Biotechnologie &#x2013; Katholieke Universiteit (VIB-KU) Leuven Center for Brain and Disease Research</institution>, <addr-line>Leuven</addr-line>, <country>Belgium</country>
</aff>
<aff id="aff7">
<sup>7</sup>
<institution>Laboratory of Lymphocyte Signalling and Development, Babraham Institute</institution>, <addr-line>Cambridge</addr-line>, <country>United Kingdom</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Rosa Bacchetta, Stanford University, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Alberto Tommasini, Institute for Maternal and Child Health Burlo Garofolo (IRCCS), Italy; Jolan Eszter Walter, University of South Florida, United&#xa0;States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Rik Schrijvers, <email xlink:href="mailto:rik.schrijvers@uzleuven.be">rik.schrijvers@uzleuven.be</email> </p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Primary Immunodeficiencies, a section of the journal Frontiers in Immunology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>11</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>753978</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>08</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>10</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Staels, Collignon, Betrains, Gerbaux, Willemsen, Humblet-Baron, Liston, Vanderschueren and Schrijvers</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Staels, Collignon, Betrains, Gerbaux, Willemsen, Humblet-Baron, Liston, Vanderschueren and Schrijvers</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Inborn errors of immunity (IEI) are a heterogenous group of disorders driven by genetic defects that functionally impact the development and/or function of the innate and/or adaptive immune system. The majority of these disorders are thought to have polygenic background. However, the use of next-generation sequencing in patients with IEI has led to an increasing identification of monogenic causes, unravelling the exact pathophysiology of the disease and allowing the development of more targeted treatments. Monogenic IEI are not only seen in a pediatric population but also in adulthood, either due to the lack of awareness preventing childhood diagnosis or due to a delayed onset where (epi)genetic or environmental factors can play a role. In this review, we discuss the mechanisms accounting for adult-onset presentations and provide an overview of monogenic causes associated with adult-onset IEI.</p>
</abstract>
<kwd-group>
<kwd>primary immunodeficiency</kwd>
<kwd>genetics</kwd>
<kwd>adult-onset</kwd>
<kwd>monogenic</kwd>
<kwd>mutation</kwd>
<kwd>inborn errors of immunity</kwd>
<kwd>autoinflammatory disease</kwd>
<kwd>common variable immunodeficiency</kwd>
</kwd-group>
<contract-num rid="cn001">11B5520N, 1805518N</contract-num>
<contract-sponsor id="cn001">Fonds Wetenschappelijk Onderzoek<named-content content-type="fundref-id">10.13039/501100003130</named-content>
</contract-sponsor>
<counts>
<fig-count count="3"/>
<table-count count="7"/>
<equation-count count="0"/>
<ref-count count="189"/>
<page-count count="27"/>
<word-count count="15419"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Inborn errors of immunity (IEI) are a heterogenous group of disorders in which the development and/or function of the immune system is disturbed (<xref ref-type="bibr" rid="B1">1</xref>). They result from inborn errors in genes that functionally impact our innate or adaptive immune system (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>). As these disorders are genetically driven, a childhood-onset disease and diagnosis before adulthood is expected. However, some patients are diagnosed in adulthood, either because of a lack of awareness preventing childhood diagnosis or due to delayed onset in adulthood. The distinction between the two can also be blurred, with an incremental escalation of symptoms unmasking the underlying IEI at a later age, with retrospective indications of childhood-onset. The majority of adult-onset IEI patients are deemed to have a polygenic etiology, but an increasing number of monogenic adult-onset causes have been identified during the last decade, facilitated by the increased use of next-generation sequencing (NGS) technology (<xref ref-type="bibr" rid="B1">1</xref>). Identified and validated culprit mutations in adults by <italic>in vitro</italic> or <italic>in vivo</italic> molecular assays often reveal low penetrance germline mutations in families with incomplete penetrance or acquired (somatic) mutations. In some cases, a phenotype will only become apparent when a patient encounters specific environmental triggers (such as a pathogen) for which a disrupted response or defense was present from birth (<xref ref-type="bibr" rid="B3">3</xref>). In addition, physicians treating adults are generally less aware of monogenic diseases, especially those of the immune system. Moreover, patients with adult-onset IEI are often seen by various medical specialists because of multisystemic manifestations, which are often not recognized as one disease and treated accordingly. In this review, we discuss the mechanisms accounting for adult-onset presentations and provide an overview of monogenic causes associated with adult-onset IEIs.</p>
</sec>
<sec id="s2">
<title>2 Mechanisms of Adult-Onset Presentation in Monogenic IEI</title>
<p>Identification of monogenic defects underlying IEI have increased over time due to the widespread availability of whole exome and genome sequencing. The current international union of immunological societies (IUIS) IEI classification published on January 10, 2020 lists 416 human inborn errors of immunity distributed among 10 groups (<xref ref-type="bibr" rid="B1">1</xref>). From those, 64 gene defects (15%) have been discovered (or previously characterized and recently validated) from 2018 till 2020. The majority of these genetic defects have a germline origin (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>), meaning that the mutation is inherited from the father and/or mother. Inheritance can run through an autosomal (AD) or X-linked dominant (one mutation from a (non) affected parent; mother in case of X-linked dominant) or autosomal (AR) or X-linked recessive/compound heterozygous (CH) manner (two identical mutations from each non-affected parent or different mutations in the same gene from each non-affected parent, respectively). In a minority of cases, parents are not (germline) carriers, and a mutation is considered as <italic>de novo</italic> (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>). If a mutation is present in the parental gametes or arises during gametogenesis or conception, then every cell originating from the zygote will have the same mutation. When a mutation arises post-zygotically, 2 or more cell populations with different genotypes co-exist within the same organism (mosaicism). Mosaicism can be further divided into three types a) somatic mosaicism (only affecting somatic cells), b) gonadal mosaicism (only affecting gametes) and c) gonosomal mosaicism (affecting both gametes and somatic cells). Only in the case of gonadal and gonosomal mosaicism, a mutation can be inherited by the offspring.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Inheritance modes and mosaicism types. <bold>(A)</bold> modes of inheritance for germline mutations <bold>(B)</bold>. types of mosaicism and origin.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-753978-g001.tif"/>
</fig>
<p>The genetic mechanisms contributing to the adult-onset phenotype are summarized in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>. Most adult-onset monogenic IEI disease-causing germline mutations are hypomorphic, typically missense mutations (only partially destabilizing functional protein expression) or splice donor/acceptor site mutations (affecting the splicing and processing of mRNA but still allowing for a &#x201c;leaky&#x201d; production of the transcript). The impact of the genetic defect is related to the penetrance observed in the affected family, with low penetrance mutations yielding higher chances for adult-onset presentation. For example, in a large Japanese family with X- linked agammaglobulinemia (XLA), a patient (referred to as P2) harboring a splice donor mutation (IVS11+3G&gt;T) in <italic>BTK</italic> resulting in the skipping of exon 11 still had a leaky expression of normal size BTK transcripts resulting in residual BTK protein expression on B cells and peripheral blood mononuclear cells (PBMCs) (<xref ref-type="bibr" rid="B4">4</xref>). Another well-described example can be found in Mendelian susceptibility of mycobacterial disease (MSMD), where patients with AR inherited IFNGR1 defects have a complete abrogated signal with an early-onset presentation, while patients with AD inherited defects can remain asymptomatic for a longer time because the mutation still allows for partially retained IFN-&#x3b3; signaling activity (<xref ref-type="bibr" rid="B3">3</xref>). Another example is autoimmune lymphoproliferative syndrome (ALPS-FAS), where homozygous or CH mutations in the <italic>FAS</italic> gene are fully penetrant and present early-onset, while AD mutations are less penetrant with a hierarchy according to the location of the mutation (higher penetrance in the intracellular domain compared to the extracellular domain). However, in some cases, there is no association between the pathogenicity or location of a mutation and the penetrance of a disease. This is demonstrated by IEI in families with <italic>CTLA4</italic> or <italic>NFKB1</italic> haploinsufficiency, where some individuals harbored a complete deleterious variant without a clinical phenotype (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B6">6</xref>). For <italic>NFKB1</italic>, healthy members carrying the same loss of function (LOF) variant had a similar reduction in protein expression but slight alterations in their immunophenotype (higher CD21 <sup>low</sup> B cells compared to affected members), indicating that the cellular penetrance of the same mutation can be different (<xref ref-type="bibr" rid="B6">6</xref>). In CTLA4 haploinsufficiency, healthy members with a deleterious mutation had a decreased CTLA4 expression compared to wild-type (WT) healthy controls but increased compared to symptomatically affected family members (<xref ref-type="bibr" rid="B5">5</xref>). Therefore, additional disease-modifying factors such as mosaicism, (epi) genetic modifiers, and environmental exposure must play a role in influencing the degree of cellular dysfunction and, thus, the clinical phenotype (<xref ref-type="bibr" rid="B7">7</xref>, <xref ref-type="bibr" rid="B8">8</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Mechanism of adult-onset IEI. An example of one or two genes is given for every mechanism. *late onset phenotype, but not adult-onset.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-753978-g002.tif"/>
</fig>
<p>Somatic mutations leading to mosaicism are a well-described phenomenon and more common than initially anticipated. A recent study using deep amplicon sequencing found evidence of mosaicism in 30/128 IEI families (23.4%) (<xref ref-type="bibr" rid="B9">9</xref>). Mosaicism was most frequently observed in families with <italic>de novo</italic> mutations, families with a moderate-to-high suspicion of mosaicism, and in monogenic autoinflammatory diseases (<xref ref-type="bibr" rid="B9">9</xref>). The likelihood of somatic mosaicism increases with age, and this can contribute to an adult-onset disease presentation, either by itself or in cooperation with an inherited germline mutation. Well described examples of IEI with associated somatic mutations can be found in adult patients with autoinflammatory disorders such as cryopyrin-associated periodic syndrome (CAPS due to gain of function (GOF) mutation in <italic>NLRP3</italic>), VEXAS (Vacuoles, E1 enzyme, X linked, Autoinflammatory, Somatic, due to hypomorphic mutations in <italic>UBA1</italic>) syndrome and A20 haploinsufficiency (LOF mutations in <italic>TNFAIP3</italic>). These patients typically have lineage-restricted (mostly myeloid lineage) somatic mutations, indicating that the culprit mutation most likely arose in the later stages of fetal development or during postnatal life (<xref ref-type="bibr" rid="B10">10</xref>&#x2013;<xref ref-type="bibr" rid="B14">14</xref>). The threshold minor allelic frequency (MAF) at which a somatic mutation provokes a phenotype is not determined but the progressive increase in MAF over time seems to correlate with disease severity in some patients as described for CAPS (<xref ref-type="bibr" rid="B13">13</xref>). This suggests that reduced penetrance in some mosaic IEI is probably a direct consequence of a gene dosage effect. The cellular compartment where a mosaic mutation resides is equally important, as demonstrated by ALPS patients who only harbored a somatic <italic>FAS</italic> LOF mutation in double-negative T cells (not detectable in PBMCs by Sanger sequencing) and demonstrated a phenotype comparable to patients with a germline mutation (<xref ref-type="bibr" rid="B15">15</xref>). Besides causing an IEI by itself, a somatic variant can also contribute in addition to a germline variant to a late-onset phenotype, as seen in ALPS-FAS (<xref ref-type="bibr" rid="B15">15</xref>). In a case study analyzing 17 individuals with ALPS, 5 of them had presenting symptoms after the age of 16 (<xref ref-type="bibr" rid="B16">16</xref>). Two of them had a germline variant with predicted haploinsufficiency in <italic>FAS</italic> and an additional somatic event in the second <italic>FAS</italic> allele which was hypothesized to account for the delayed disease onset. Another IEI where somatic mosaicism is associated with an adult-onset phenotype is a chronic granulomatous disease (CGD). Wolach et&#xa0;al. describe an 80-year-old woman with symptom onset at the age of 66 caused by a stop mutation (p.Tyr30*) in <italic>CYBB</italic> encoding gp91<sup>phox</sup>, important for the oxidative burst response in myeloid cells (<xref ref-type="bibr" rid="B17">17</xref>). The mutation was identified in the short-lived blood cells but not in long-lived memory T cells or cheek mucosal cells, suggesting it had occurred later in life. Moreover, leukocytes showed a markedly skewed X inactivation pattern. They hypothesized that this X skewing was caused by another parental gene on the active X chromosome harboring the mutation since no selective advantage has been described for X-CGD mutations in hematopoietic cells. Besides causing disease, somatic mosaicism can also rescue disease, so-called revertant mosaicism. In these cases, a second mutation improves the production of a functional gene product either by giving a selective advantage to WT cells or by directly counteracting the negative impact of the mutant allele on protein function. Although this phenomenon has not yet been reported in adult-onset cases, it is associated with later and milder disease onset as seen in patients with defects in <italic>ADA, IL2RG, WASP, SAMD9</italic> and <italic>CD3-&#x3b6;</italic> (<xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B19">19</xref>). Finally, epistasis (dependency of the effect of a mutation on the presence or absence of mutations in the same or other genes) can affect disease presentation. In patients with STING associated vasculopathy with onset in infancy (SAVI), caused by GOF mutations in STING, disease-onset and manifestations can be influenced by single nucleotide polymorphisms (SNPs) in STING itself or in other IFN related genes such as <italic>IFIH1</italic> (<xref ref-type="bibr" rid="B20">20</xref>).</p>
<p>Environmental factors can also contribute to phenotypic variability, both in terms of severity and age of onset. A typical example is seen in patients who develop disseminated mycobacterial disease after Bacillus Calmette-Gu&#xe9;rin (BCG) vaccination and, because of these events, are later diagnosed with an inborn error of IFN-&#x3b3; immunity. These patients were previously healthy because they were never exposed to this specific microorganism (<xref ref-type="bibr" rid="B21">21</xref>). Accordingly, it is hypothesized that delayed contact with specific pathogens in patients with an isolated increased susceptibility for this specific pathogen might account for the delayed onset, as in other cases of MSMD and viscerotropic Yellow fever postvaccination (<xref ref-type="bibr" rid="B22">22</xref>). Evidence for infections as a trigger of disease onset also comes from murine models. Knock in mice with a GOF mutation in STING (p.N153S) only developed pulmonary fibrosis after infection with gamma herpes virus 68 (&#x3b3;HV68), and this could be prevented by administration of cidofovir, an antiviral drug against &#x3b3;HV68 (<xref ref-type="bibr" rid="B23">23</xref>). It is unclear how these data translate to human patients, but adult-onset pulmonary fibrosis has been reported in SAVI (<xref ref-type="bibr" rid="B20">20</xref>). Infections can also trigger immune dysregulation, as observed in patients with familial hemophagocytic lymphohistiocytosis (fHLH), most commonly caused by mutations in <italic>PRF1</italic>, where bouts of autoinflammation often coincide with upper respiratory or gastrointestinal infections (<xref ref-type="bibr" rid="B24">24</xref>). Other triggers such as irradiation or chemotherapy can also unmask an underlying DNA repair defect at a later age, as described for patients with Ligase-4 (LIG4) deficiency (<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>). Age is also an important influencing factor, as humoral immunity can mature and compensate for certain inborn defects in innate immunity. A well-described example is a deficiency in TIRAP3, a key toll-like receptor (TLR) adaptor, caused by recessive LOF mutations. A homozygous LOF mutation was described in a child with severe staphylococcal infection, while older relatives carrying the same mutation were reported to be healthy due to the presence of anti-lipoteichoic acid antibodies targeting <italic>S. aureus</italic>, which were lacking in the index patient (<xref ref-type="bibr" rid="B27">27</xref>).</p>
<p>Finally, epigenetic alterations are often implicated to contribute to incomplete penetrance and late-onset disease. Epigenetic modifications play an important role in shaping our immune system and response (<xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B29">29</xref>). This is demonstrated by the identification of genetic defects involved in methylation, histone modification, chromatin remodeling and alteration in non-coding RNA resulting in different immunodeficiency syndromes (<xref ref-type="bibr" rid="B29">29</xref>). Progressive X-chromosome skewing (XCI) can cause an X-linked recessive IEI in women bearing a pathogenic mutation on one X chromosome. This is demonstrated by cases of CGD due to mutations in <italic>CYBB</italic> in adult women (<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B31">31</xref>). Epigenetic changes are well known to influence the transcriptional expression of genes (<xref ref-type="bibr" rid="B29">29</xref>). Therefore, it would not be surprising that the difference in epigenome between two individuals with the same pathogenic mutation can impact the final effect of the mutation in terms of gene expression (<xref ref-type="bibr" rid="B32">32</xref>). The impact of epigenetics on disease outcome is best studied in monozygotic twins who are genetically identical. A recent study investigating the epigenome of two monozygotic twins discordant for common variable immunodeficiency (CVID) showed a predominant gain of methylation in critical B lymphocyte genes in the patient compared to his healthy sibling (<xref ref-type="bibr" rid="B33">33</xref>). Moreover, the epigenome can change over time, as aging is associated with the relaxation of epigenetic control (<xref ref-type="bibr" rid="B34">34</xref>).</p>
</sec>
<sec id="s3">
<title>3 Genetic Defects Associated With Adult-Onset IEI</title>
<p>As a guide, we used the most recent IUIS phenotypical classification list (2019) (<xref ref-type="bibr" rid="B35">35</xref>) and updates given thereafter (<xref ref-type="bibr" rid="B2">2</xref>). We focused on the following groups: immunodeficiencies affecting cellular and humoral immunity, predominant antibody deficiencies, diseases of immune dysregulation, defects in intrinsic and innate immunity, autoinflammatory disorders, and complement deficiencies because adult-onset phenotypes are most frequently reported within one of these seven groups (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Only genes for which there is clearly evidence-based functional studies demonstrating the pathogenic effect of disease-causing mutations <italic>in vitro</italic> or <italic>in vivo</italic> will be discussed. Risk alleles identified by genome wide association studies but lacking a monogenic genotype-phenotype relationship were omitted from this review. Congenital defects of phagocytosis, combined immunodeficiencies with syndromic features, and bone marrow failure syndromes are also not discussed as those rarely present with adult-onset. Appropriate papers were selected from PubMed using the following search terms: &#x201c;gene name&#x201d; AND primary immunodeficiency AND adult OR adult-onset OR adult-onset OR incomplete penetrance. Search results were reviewed by two reviewers (FS and TC) and screened for adult-onset patients (no relevant medical history reported before the age of 18, or explicitly reported as adult-onset in the manuscript). Citation history was screened for additional single case reports or series. An age exception was made for the defects affecting cellular and humoral immunity, for which we included late adolescence onset cases with a clear demonstration of hypomorphic variants or cases with very mild symptoms during childhood and diagnosis in adulthood due to worsening symptoms. The oldest patient for each reviewed disease is depicted in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Adult <italic>vs</italic> non-adult-onset associated genes implicated in PID.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Category</th>
<th valign="top" align="center">Subcategory</th>
<th valign="top" align="center">Adult-onset</th>
<th valign="top" align="center">Non-adult-onset</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<bold>Immunodeficiencies affecting cellular and humoral immunity</bold>
</td>
<td valign="top" align="left">
<italic>T- B+ SCID</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">CD3D, CD3E, CD3Z, CORO1A, IL2RG, IL7R, JAK3, LAT, PTPRC</td>
</tr>
<tr>
<td valign="top" rowspan="3" align="left"/>
<td valign="top" align="left">
<italic>T- B- SCID</italic>
</td>
<td valign="top" align="left">ADA, DCLRE1C, RAG1, RAG2</td>
<td valign="top" align="left">AK2, LIG4, NHEJ1, PRKDC, RAC2</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">
<italic>Combined immunodeficiencies generally less profound than severe combined immunodeficiency</italic>
</td>
<td valign="top" align="left">B2M, CD40LG, CIITA, ICOS, TAP2</td>
<td valign="top" rowspan="2" align="left">BCL10, CD3G, CD40, CD8A, DOCK2, DOCK8, FCHO1, ICOSLG, IKBK, IKZF1, IL21, IL21R, ITK, LCK, LIG4, MALT1, MAP2K14, MSN, POLD1, POLD2, REL, RELA, RELB, RFX5, RFXANK, RHOH, STK4, TAP1, TAPBP, TRFC, TNFRSF4, TRAC, ZAP70</td>
</tr>
<tr>
<td valign="top" align="left">ADA, DCLRE1C, RAG1, RAG2, CARD11 LOF</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Predominantly antibody deficiencies</bold>
</td>
<td valign="top" align="left">
<italic>Agammaglobulinemia</italic>
</td>
<td valign="top" align="left">BTK, PIK3CD (AD)</td>
<td valign="top" align="left">BLNK, CD79A, CD79B, IGHM, IGLL1, PIK3R1 (AR), SLC39A7, TCF3, TOP2B</td>
</tr>
<tr>
<td valign="top" rowspan="3" align="left"/>
<td valign="top" align="left">
<italic>CVID</italic>
</td>
<td valign="top" align="left">CD21, IKZF1, NFKB1, NFKB2, TNFRSF13B, TNFRSF13C</td>
<td valign="top" align="left">ARHGEF1, ATP6AP1, CD19, CD20, CD81, IRF2BP2, MOGS, PIK3R1 (AD), PTEN, RAC2, SEC61A1, SH3KBP1, TNFRSF12, TRNT1</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Severe reduction in serum IgG and IgA with normal/elevated IgM and normal numbers of B cells, hyper IgM</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">AICDA (AR), AICDA (AD), INO80, MSH6, UNG</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Isotype, light chain, or functional deficiencies with generally normal numbers of B cells</italic>
</td>
<td valign="top" align="left">CARD11 (AD GOF)</td>
<td valign="top" align="left">IGKC</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Diseases of immune dysregulation</bold>
</td>
<td valign="top" align="left">
<italic>Familial hemophagocytic lymphohistiocytosis (fHLH syndromes)</italic>
</td>
<td valign="top" align="left">PRF1, STXBP2, STX11*, UNC13D</td>
<td valign="top" align="left">FAAP24, SLC7A7</td>
</tr>
<tr>
<td valign="top" rowspan="6" align="left"/>
<td valign="top" align="left">
<italic>fHLH syndromes with hypopigmentation**</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">APB3B1, AP3D1, LYST, RAB27A</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Regulatory T cell defects</italic>
</td>
<td valign="top" align="left">BACH2, CTLA4</td>
<td valign="top" align="left">DEF6, FERMT1, FOXP3, IL2RA, IL2RB, LRBA, STAT3***</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Autoimmunity with or without lymphoproliferation</italic>
</td>
<td valign="top" align="left">AIRE (AR/AD)</td>
<td valign="top" align="left">ITCH, JAK1, PEPD, TPP2</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Immune dysregulation with colitis</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">IL10, IL10RA, IL10RB, NFAT5, RIPK1, TGFB1</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Autoimmune lymphoproliferative syndrome (ALPS, Canale Smith syndrome)</italic>
</td>
<td valign="top" align="left">FAS</td>
<td valign="top" align="left">CASP10, CASP8, FADD, FASL</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Susceptibility to EBV and lymphoproliferative conditions</italic>
</td>
<td valign="top" align="left">MAGT1, SH2D1A, XIAP</td>
<td valign="top" align="left">CARMIL2, CD27, CD70, CTPS1, PRKCD, RASGRP1</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Defects in intrinsic and innate immunity</bold>
</td>
<td valign="top" align="left">
<italic>Mendelian susceptibility to mycobacterial disease (MSMD)</italic>
</td>
<td valign="top" align="left">IFNGR1, IL12RB1, STAT1 (AD), TYK2, GATA2</td>
<td valign="top" align="left">CYBB****, IL12B, IL12RB2, IL23R, IRF8 (AD/AR), ISG15, JAK1, RORC, SPPL2A</td>
</tr>
<tr>
<td valign="top" rowspan="8" align="left"/>
<td valign="top" align="left">
<italic>Epidermodysplasia verruciformis (HPV)</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">CIB1, CXCR4, TMC6, TMC8</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Predisposition to severe viral infection</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">FCGR3A, IFIH1, IFNAR1, IFNAR2, IRF7, IRF9, POLR3A, POLR3C, POLR3F, STAT1 (AR), STAT2</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Herpes simplex encephalitis (HSE)</italic>
</td>
<td valign="top" align="left">TLR3 (AD/AR)</td>
<td valign="top" align="left">DBR1, IRF3, TBK1, TICAM1, TRAF3, UNC93B1</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Predisposition to invasive fungal infections</italic>
</td>
<td valign="top" align="left">CARD9</td>
<td valign="top" align="left">/</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Predisposition to mucocutaneous candidiasis</italic>
</td>
<td valign="top" align="left">STAT1 (AD)</td>
<td valign="top" align="left">IL17F, IL17RA, IL17RC, TRAF3IP2</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>TLR signaling pathway deficiency with bacterial susceptibility</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">IRAK1, IRAK4, MYD88, TIRAP</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Other inborn errors of immunity related to non-hematopoetic tissues</italic>
</td>
<td valign="top" align="left">/</td>
<td valign="top" align="left">APOL1, CLCN7, HMOX, NBAS, NCSTN, OSTM1, PLEKHM1, PSEN, PSENEN, RANBP2, RPSA, SNX10, TCIRG1, TNFRSF11A, TNFSF11</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Other inborn errors of immunity related to leukocytes</italic>
</td>
<td valign="top" align="left">IRF4</td>
<td valign="top" align="left">IL18BP</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Autoinflammatory disorders</bold>
</td>
<td valign="top" align="left">
<italic>Interferonopathies</italic>
</td>
<td valign="top" align="left">CECR1, STING1</td>
<td valign="top" align="left">ACP5, ADAR1, DNASE1L3, IFIH1, OAS1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, TREX1, USP18</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left"/>
<td valign="top" align="left">
<italic>Defects affecting the inflammasome</italic>
</td>
<td valign="top" align="left">MEFV (AD/AR), NLRP3, NLRP12</td>
<td valign="top" align="left">MVK, NLRC4, NLRP1, PLCG2</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Non-inflammasome related conditions</italic>
</td>
<td valign="top" align="left">CARD14, IL36RN, NOD2, TNFAIP3, TNFRSF1A, UBA1</td>
<td valign="top" align="left">ADAM17, ALPI, AP1S3, COPA, HAVCR2, IL1RN, LPIN2, OTULIN, PSMB8, PSMG2, PSTPIP1, SH3BP2, SLC29A3, TRIM22</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>Complement deficiencies</bold>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">C5, C6, C7, C8, C9, <italic>SERPING1</italic>, MASP2, CFD, <italic>CFH, CFI, C3, CD46, THBD, CFHR1-5 (AD/AR), CD59, CFB (AD)</italic>
</td>
<td valign="top" align="left">C1QA, C1QB, C1QC, C1R (AD/AR), C1S (AD/AR), C2, C4A, C4B, CD55, CFB (AR), CFP, FCN3</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>*STX11: reported in three adult-onsets, but monoallelic and no clear evidence of pathogenicity.</p>
</fn>
<fn>
<p>**Adult-onset has been described manifesting as neurological disease but without the presence of immunodeficiency or HLH.</p>
</fn>
<fn>
<p>***STAT3: somatic mutations are associated with adult-onset leukemia with autoimmunity and immune-mediated cytopenias.</p>
</fn>
<fn>
<p>****CYBB: not reported adult-onset in the context of MSMD, but reported in X-CGD (not in the scope of this review).</p>
</fn>
<fn>
<p>Italic: reported in the context of adult-onset aHUS with or without infectious susceptibility or hereditary angioedema.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Time of onset in adult IEI. Adult-onset IEI genes with oldest age-of-onset patient reported for every gene (from all reviewed manuscripts) in each category. s: somatic. g: germline. <sup>1</sup>onset between 20-30 years, <sup>2</sup>immunological abnormalities, <sup>3</sup>onset in mid-twenties, <sup>4</sup>asymptomatic, 51 years old, <sup>5</sup>genetic defect in C5/6/7/8 or 9, mean age of oldest presentations. Dashed line indicates threshold for adult-onset (18-years-old).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fimmu-12-753978-g003.tif"/>
</fig>
<sec id="s3_1">
<title>3.1 Immunodeficiencies Affecting Cellular and Humoral Immunity</title>
<sec id="s3_1_1">
<title>3.1.1 T- B- Severe Combined Immunodeficiency</title>
<sec id="s3_1_1_1">
<title>ADA</title>
<p>Adenosine deaminase (ADA) deficiency is one of the most common forms of severe combined immunodeficiency (SCID) that arises through AR inherited mutations in the <italic>ADA</italic> gene, encoding an enzyme involved in the purine salvage pathway (<xref ref-type="bibr" rid="B36">36</xref>). As a form of SCID, ADA-deficiency typically presents at birth, but it has also been described presenting with a milder phenotype later in childhood (delayed onset) or even in adulthood (adult-onset). Late-onset disease tends to gradually worsen over time (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B50">50</xref>). The first cases that were classified as adult-onset ADA-deficiency were reported by Shovlin et&#xa0;al. (<xref ref-type="bibr" rid="B51">51</xref>). They described two sisters that presented in their mid-30s with recurrent infections and chronic respiratory disease. However, retrospectively the older sister developed idiopathic thrombocytic purpura at 17-years-old and the younger sister had a history of recurrent infections, viral warts and mucocutaneous candidiasis since childhood (<xref ref-type="bibr" rid="B51">51</xref>). Both had undetectable ADA activity in erythrocytes (lymphocytes not tested) and a CH mutation (p.R211C and a deletion resulting in the loss of exon1). A third 28-year-old male patient was described by Ozsahin et&#xa0;al. (<xref ref-type="bibr" rid="B37">37</xref>). He had no relevant medical history apart from recurrent tonsillitis starting at 10-years-old. He carried a CH mutation (p.R101Q acting as a null allele and p.A215T acting as hypomorphic with 15% of WT activity). ADA activity in lymphocytes was very low, but still detectable. The residual ADA activity potentially explains the late onset and mild phenotype in this case (<xref ref-type="bibr" rid="B37">37</xref>). In conclusion, although most commonly presenting as SCID during early life, ADA-deficiency is a genetically and clinically heterogenous disorder with different phenotypes depending on the nature and effect of the genetic mutation. (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>)</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Genes associated with adult-onset combined immunodeficiencies.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Disease</th>
<th valign="top" align="center">Genetic defect</th>
<th valign="top" align="center">Inheritance</th>
<th valign="top" align="center">Functional defect</th>
<th valign="top" align="center">Phenotype (key features)</th>
<th valign="top" align="center">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="10" align="left">
<bold>DEFECTS AFFECTING CELLULAR AND HUMORAL IMMUNITY</bold>
</td>
<td valign="top" align="left">ADA-deficiency</td>
<td valign="top" align="left">
<italic>ADA</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF mutations, residual enzymatic activity (lymphocytes)</td>
<td valign="top" align="left">Recurrent and severe infections, low B/T cells</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">Artemis-deficiency</td>
<td valign="top" align="left">
<italic>DCLRE1C</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, defective dsDNA break repair during VDJ recombination</td>
<td valign="top" align="left">Susceptibility to viral and fungal infections, predisposition to cancer, myelodysplasia, low B/T cells, neutropenia and thrombocytopenia</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B38">38</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">RAG1-deficiency</td>
<td valign="top" align="left">
<italic>RAG1</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, reduced VDJ recombination activity</td>
<td valign="top" align="left">Eosinophilia, chronic dermatitis, low B/T cells</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B39">39</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">RAG-2 deficiency</td>
<td valign="top" align="left">
<italic>RAG2</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, reduced VDJ recombination activity</td>
<td valign="top" align="left">Recurrent sinopulmonary infections, CD4 lymphopenia, defective T independent IgG response, hypogammaglobulinemia</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B40">40</xref>)</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">&#x3b2;2m-deficiency</td>
<td valign="top" rowspan="2" align="left">
<italic>B2M</italic>
</td>
<td valign="top" rowspan="2" align="left">Germline recessive</td>
<td valign="top" rowspan="2" align="left">LoF, absent or very low &#x3b2;2m surface expression; results in reduced MHC1/FcRn expression</td>
<td valign="top" align="left">Sinopulmonary infections, cutaneous granulomas</td>
<td valign="top" rowspan="2" align="center"> (<xref ref-type="bibr" rid="B41">41</xref>&#x2013;<xref ref-type="bibr" rid="B43">43</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">Hypogammaglobulinemia, hypoalbuminemia, low CD8, normal or elevated IgA and IgM</td>
</tr>
<tr>
<td valign="top" align="left">CD40 ligand-deficiency (X-linked hyper IgM syndrome-</td>
<td valign="top" align="left">
<italic>CD40LG</italic>
</td>
<td valign="top" align="left">X-linked</td>
<td valign="top" align="left">LoF, impaired CD40L-CD40 interaction with decreased B-cell activation and isotype switching</td>
<td valign="top" align="left">Recurrent infections, low serum IgG, IgA and IgE, normal or increased IgM.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B44">44</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">MHC II deficiency, complementation group A</td>
<td valign="top" align="left">
<italic>CIITA</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF mutations in CIITA, resulting in absent or decreased MHC II expression.</td>
<td valign="top" align="left">Recurrent respiratory tract infections, progressive susceptibility to infections, low CD4+ T cells</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B45">45</xref>, <xref ref-type="bibr" rid="B46">46</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">ICOS-deficiency</td>
<td valign="top" align="left">
<italic>ICOS</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, lack of ICOS expression, severely disturbing T-cell dependent B-cell maturation.</td>
<td valign="top" align="left">Decreased B-cell numbers, low serum immunoglobulins, recurrent gastrointestinal and sinopulmonary infections, susceptibility to viral infections, autoimmunity and immune dysregulation.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B48">48</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">MHC-class I deficiency</td>
<td valign="top" align="left">
<italic>TAP2</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, abrogating TAP2 function/expression, preventing HLA class I molecule maturation.</td>
<td valign="top" align="left">Granulomatous skin disease, decreased surface expression of HLA class I molecules, (recurrent bacterial infections).</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B49">49</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Additional clinical and immunological features can be found in (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_1_1_2">
<title>DCLRE1C</title>
<p>
<italic>DLCRE1C</italic> encodes Artemis, a protein involved in the repair of double strand DNA breaks (DSB) induced by recombination-activating gene 1 (RAG1) and RAG2 as a part of VDJ recombination (<xref ref-type="bibr" rid="B52">52</xref>). Mutations in <italic>DCLRE1C</italic> result in a form of radiation-sensitive SCID (rs-SCID). Hypomorphic mutations can contribute to later onset disease or leaky SCID, presenting as a combined immunodeficiency at an older age in infancy or childhood (<xref ref-type="bibr" rid="B53">53</xref>, <xref ref-type="bibr" rid="B54">54</xref>). One patient reported by Woodbine et&#xa0;al. developed progressive immune dysfunction at 27-years-old (<xref ref-type="bibr" rid="B38">38</xref>). She presented with <italic>in situ</italic> carcinoma in one nipple, and progressed to a phenotype with recurrent viral and fungal infections and myelodysplasia. Skin fibroblasts displayed radiation sensitivity and a defective DSB repair in the G2 phase. Genetic analysis revealed a heterozygous mutation (p.P171R) which caused a 3-fold decrease in Artemis activity <italic>in vitro</italic>. The other allele did not show any exonic variants, but the gene product was mis-spliced and prone to nonsense mediated decay, so the authors hypothesized the presence of an intronic splicing mutation. The hypomorphic p.P171R variant in combination with an undefined intronic mutation affecting the splicing of Artemis could contribute to the development of a mild and progressive late onset immunodeficiency (<xref ref-type="bibr" rid="B38">38</xref>).</p>
</sec>
<sec id="s3_1_1_3">
<title>RAG1</title>
<p>RAG1 and RAG2 play a crucial role in inducing DSB during VDJ-recombination, and AR null mutations can lead to SCID. Hypomorphic mutations however can give rise to a spectrum of phenotypes including Omenn syndrome, atypical SCID and combined immunodeficiency (<xref ref-type="bibr" rid="B55">55</xref>, <xref ref-type="bibr" rid="B56">56</xref>), that can all exhibit features of immune dysregulation (<xref ref-type="bibr" rid="B57">57</xref>). Adult-onset phenotypes are very rare, even in patients with hypomorphic mutations in RAG1 who often have mild disease in childhood. Abraham et&#xa0;al. identified a male patient harboring a heterozygous hypomorphic RAG1 frameshift mutation (p.K86Vfs*33) who presented at 38-years-old with a pruritic skin rash that started two years earlier, eosinophilia and T-cell lymphopenia (<xref ref-type="bibr" rid="B39">39</xref>). No other mutation in RAG1 or other SCID-related genes that were known at the time were found. The mutation described is damaging as it is found in homozygous or CH SCID patients or patients with Omenn syndrome. His healthy father was found to carry the same mutation, suggesting that other genetic or environmental modifiers might contribute to the observed phenotype (<xref ref-type="bibr" rid="B39">39</xref>). Another case reports an adult patient presenting with progressive multifocal leukoencephalopathy at the age of 37 (<xref ref-type="bibr" rid="B58">58</xref>). The patient harbored a CH mutation in RAG1 (p.F478Sfs*14 and p.H375D on one allele and a p.R474C on the other allele). A VDJ recombination assay for p.R474C showed 8% of the normal WT function, while the other mutations were not assessed but predicted to be damaging. In retrospect, the patient already was prone to mild infections during childhood (recurrent respiratory tract and gastroenteritis), but infectious manifestations decreased in puberty.</p>
</sec>
<sec id="s3_1_1_4">
<title>RAG2</title>
<p>RAG2 mutations have also been reported to cause an antibody deficiency phenotype (<xref ref-type="bibr" rid="B40">40</xref>). A 41-year-old woman with no medical history developed recurrent bronchitis and pneumonia and was diagnosed to have antibody deficiency against bacterial polysaccharide antigens (<xref ref-type="bibr" rid="B40">40</xref>). Genetic analysis identified a CH mutation in <italic>RAG2</italic> (p.G95R with absent expression and p.S381fs*1 with a C-terminal truncated RAG2). The functional consequence of the frameshift mutation was not assessed because it was assumed to lead at least to a partial LOF effect based on a mouse model, lacking the C terminal domain of RAG2, which showed partially retained protein expression similar to humans but with impaired lymphoid development (<xref ref-type="bibr" rid="B59">59</xref>). This could be a plausible explanation for the adult-onset and mild phenotype in the above described patient.</p>
</sec>
</sec>
<sec id="s3_1_2">
<title>3.1.2 Combined Immunodeficiencies Less Profound Than SCID</title>
<sec id="s3_1_2_1">
<title>B2M</title>
<p>B2M encodes &#x3b2;2-microglobulin (&#x3b2;2m) that composes the light chain of the major histocompatibility complex (MHC) class I molecules and is essential for transport and stabilization of MHC I molecules on the cell surface (<xref ref-type="bibr" rid="B41">41</xref>). Furthermore, it also forms a heterodimer with MHC I &#x3b1; chain to form the neonatal Fc receptor (FcRn) which binds IgG and albumin preventing their lysosomal degradation (<xref ref-type="bibr" rid="B41">41</xref>, <xref ref-type="bibr" rid="B42">42</xref>). In 1990, two consanguineous siblings were reported suffering from hypoalbuminemia and hypogammaglobulinemia (<xref ref-type="bibr" rid="B43">43</xref>). A 34-year-old female patient became symptomatic at 21-years-old, developing a purpuric skin rash and later ulcerative lesions on her leg. She developed thrombocytopenic purpura, and eventually died of sepsis due to bilateral pneumonia. Her 17-year-old brother was asymptomatic, but immunological examination revealed low serum IgG and low albumin levels. Although both siblings were lost to follow up, 35 years later a homozygous LOF <italic>B2M</italic> mutation (p.A11P, leading to &lt;10% expression &#x3b2;2m compared to WT) was found in DNA isolated from preserved sera (<xref ref-type="bibr" rid="B42">42</xref>). &#x3b2;2m is also a component of the neonatal Fc receptor (FcRn). FcRn binds IgG and albumin and is important in regulating their normal concentrations (<xref ref-type="bibr" rid="B42">42</xref>), thus deficiency of B2M was the culprit for the hypercatabolic hypoproteinemia in these cases. In 2015, two other consanguineous siblings were identified with a homozygous splice site mutation (c.67+1G&gt;T, resulting in nonsense mediated decay and no protein expression in patient&#x2019;s lymphocytes) (<xref ref-type="bibr" rid="B41">41</xref>). They both displayed hypoalbuminemia and low IgG levels, with normal or elevated IgA or IgM levels. The older sister suffered from granulomatous dermatitis since 9 years of age and developed bronchiectasis. Her brother was clinically asymptomatic but shown to have bronchiectasis on pulmonary computed tomography (CT) scan. Based on these two reports, &#x3b2;2m-deficiency can be characterized as an immunodeficiency with hypogammaglobulinemia and hypoalbuminemia that can range from subclinical phenotype to severe symptoms presenting in late childhood or adolescence.</p>
</sec>
<sec id="s3_1_2_2">
<title>CD40LG</title>
<p>
<italic>CD40LG</italic> encodes CD40 ligand (CD40L), which is a surface molecule on activated T helper cells that transfers signals through CD40 for B-cell activation, differentiation and isotype switching (<xref ref-type="bibr" rid="B60">60</xref>, <xref ref-type="bibr" rid="B61">61</xref>). Mutations in <italic>CD40L</italic> are associated with an X-linked form of hyper IgM syndrome (HIGM) (<xref ref-type="bibr" rid="B60">60</xref>), and are the most commonly identified genetic cause of this disorder (<xref ref-type="bibr" rid="B44">44</xref>). HIGM syndrome is characterized by low levels of serum IgG, IgA and IgE, normal or high levels of IgM and recurrent infections (<xref ref-type="bibr" rid="B44">44</xref>, <xref ref-type="bibr" rid="B60">60</xref>). In a study of 140 patients with HIGM syndrome, 98 patients were found to carry mutations in <italic>CD40LG</italic> (<xref ref-type="bibr" rid="B44">44</xref>). Of these, 6 patients had a mild clinical phenotype with onset after 14 years of age. Only one patient had adult-onset disease (23 years) harboring a missense mutation (p.T254M, with proven decreased expression of CD40L) affecting the extracellular domain of CD40L. More recently, a 41-year-old Caucasian man, carrying a nonsense mutation (p.R11*, with normal truncated protein expression) with disease onset in the fifth decade was described by Yong et&#xa0;al. (<xref ref-type="bibr" rid="B62">62</xref>). He presented with hemiparesis due to cerebral toxoplasmosis, a 2-year history of recurrent impetigo and chest infections (<xref ref-type="bibr" rid="B62">62</xref>) and later progressed to develop eosinophilia and pulmonary aspergilloma (<xref ref-type="bibr" rid="B63">63</xref>). The milder phenotype was suggested to be the result of a stable expressed mutant with a normal extracellular domain, still enabling CD40-CD40L interaction and partial signaling. His siblings and other family members were also evaluated in a second study (<xref ref-type="bibr" rid="B63">63</xref>). An older brother carried the same mutation. Whereas he did not have any symptoms or relevant clinical history, his IgA and IgG levels were abnormally decreased and his IgM was elevated. In two nephews who suffered from recurrent respiratory infections, the mutation was also found. Their IgG levels, however, were higher than those observed in their two uncles, leading to the hypothesis that the p.R11* mutation might contribute to a gradual deterioration of class switching, or that physiological immune senescence could alter the effects of the mutation (<xref ref-type="bibr" rid="B63">63</xref>).</p>
</sec>
<sec id="s3_1_2_3">
<title>CIITA</title>
<p>
<italic>CIITA</italic> encodes class II trans-activator, that regulates transcription of MHC molecules by functioning both as a transcriptional activator by coordinating DNA binding factors RFX, CREB and NF-Y and as a transcription factor (<xref ref-type="bibr" rid="B64">64</xref>). Deficiency of CIITA results in MHC class II deficiency group A, characterized by a total lack of MHC II expression. In a patient presenting in his twenties, Quan et&#xa0;al. identified a homozygous LOF missense mutation (p.F961S) that resulted in absent expression of MHC II molecules (<xref ref-type="bibr" rid="B45">45</xref>). His symptoms progressively worsened in his early thirties, and he eventually died of multiple bacterial infections. Another atypical case was found among three siblings that harbored a homozygous missense mutation (p.L469P), with the mutant allele showing residual activity (<xref ref-type="bibr" rid="B46">46</xref>). Two of them suffered from mild immunodeficiency characterized by recurrent respiratory tract infections starting in childhood, while the oldest sister was asymptomatic. Apart from two episodes of pneumonia during childhood, she was completely healthy although she lacked MHC II expression. The investigators hypothesized that the mild clinical phenotype may be due to residual CIITA activity (<xref ref-type="bibr" rid="B46">46</xref>).</p>
</sec>
<sec id="s3_1_2_4">
<title>ICOS</title>
<p>Inducible co-stimulator (ICOS) is a surface molecule on activated T-cells and is predominantly expressed on T-cells in the germinal center of secondary lymphoid tissue (<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B65">65</xref>). It plays an important role in induction of several cytokines, including superinduction of IL-10, and T-cell dependent maturation of B-cells (<xref ref-type="bibr" rid="B47">47</xref>, <xref ref-type="bibr" rid="B65">65</xref>, <xref ref-type="bibr" rid="B66">66</xref>). Mutations in <italic>ICOS</italic> were first discovered as a genetic cause of CVID by the identification of four adult CVID patients carrying homozygous <italic>ICOS</italic> mutations (c.126-568.del) resulting in a complete lack of ICOS expression (<xref ref-type="bibr" rid="B47">47</xref>). A more recent report describing previously published cases expanded the clinical phenotype (<xref ref-type="bibr" rid="B48">48</xref>). Six out of 15 ICOS-deficient patients (with age of onset ranging from 1 month to 35 years) presented in adulthood with a variety of symptoms, including recurrent sinopulmonary and gastro-intestinal tract infections, viral infections, signs of autoimmunity and immune dysregulation. They all carried deletions in <italic>ICOS</italic> that resulted in a frameshift and premature stop codon. Opportunistic infections were associated with early disease onset, and were not observed in patients with adult-onset disease (<xref ref-type="bibr" rid="B48">48</xref>). In ICOS deficiency, B cell counts appear to decrease during the course of disease (which might explain an adult-onset phenotype), possibly related to progressive bone marrow output failure (<xref ref-type="bibr" rid="B48">48</xref>).</p>
</sec>
<sec id="s3_1_2_5">
<title>TAP2</title>
<p>Transporter associated with antigen processing 2 (TAP2) transports antigenic peptides into the ER so that they can be loaded onto human leukocyte antigens (HLA) I molecules (<xref ref-type="bibr" rid="B67">67</xref>). <italic>TAP2</italic> is the only gene reported in adult-onset cases of MHC class I deficiency. A homozygous LOF intronic mutation at a splice acceptor site (c.1636-1G&gt;A) introducing a frameshift (p.V545Wfs) was found in a 46-year-old male patient who developed granulomatous skin lesions on his leg and his asymptomatic 30-year-old sister (<xref ref-type="bibr" rid="B49">49</xref>). The mutation affected the ATP binding site of TAP2 and abrogated its function, thereby inhibiting the maturation of HLA class I molecules. The index patient had 10-15 times lower expression of HLA class I molecules, but still three times higher than in a cell line derived from a previously described TAP2-deficient patient, possibly contributing to the mild or asymptomatic clinical phenotype in these two siblings (<xref ref-type="bibr" rid="B49">49</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s3_2">
<title>3.2 Predominantly Antibody Deficiencies</title>

<sec id="s3_2_1">
<title>3.2.1 Agammaglobulinemia</title>
<sec id="s3_2_1_1">
<title>BTK</title>
<p>X-linked agammaglobulinemia (XLA) is a humoral immunodeficiency found in males, caused by defects in <italic>BTK</italic> encoding Bruton&#x2019;s tyrosine kinase, an enzyme involved in B cell maturation by transmitting signals through the pre-B and B cell receptor. Mutations are reported in all domains and result in reduced protein expression or kinase activity. Disease manifestations (recurrent sinopulmonary infections by encapsulated bacteria) mostly occur in infancy (mean age 3.5 years). In exceptional cases, hypomorphic BTK alleles can result in an adult-onset phenotype (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold></xref>) (<xref ref-type="bibr" rid="B68">68</xref>, <xref ref-type="bibr" rid="B69">69</xref>, <xref ref-type="bibr" rid="B81">81</xref>). However, when carefully reviewing medical records, most adults diagnosed with XLA will have an early-onset phenotype (<xref ref-type="bibr" rid="B70">70</xref>). Among reported adult-onset patients, one patient had symptom onset at 25 years of age (<xref ref-type="bibr" rid="B68">68</xref>) and another was diagnosed at the age of 24 when familial work-up, initiated because a sibling was diagnosed with XLA, revealed hypogammaglobulinemia (<xref ref-type="bibr" rid="B69">69</xref>). In most reports, late-onset phenotypes are characterized by partial BTK deficiency on flowcytometry and higher immunoglobulin levels compared to early-onset XLA (<xref ref-type="bibr" rid="B70">70</xref>, <xref ref-type="bibr" rid="B81">81</xref>) indicative for the hypomorphic impact of the mutation. Noteworthy, B cell counts should always be tested since BTK deficiency can be misdiagnosed for CVID and early-onset GI disease (<xref ref-type="bibr" rid="B82">82</xref>)</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Genes associated with adult-onset predominant antibody deficiencies.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Disease</th>
<th valign="top" align="center">Genetic defect</th>
<th valign="top" align="center">Inheritance</th>
<th valign="top" align="center">Functional defect</th>
<th valign="top" align="center">Phenotype (key features)</th>
<th valign="top" align="center">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="10" align="left">
<bold>PREDOMINANT ANTIBODY DEFICIENCIES</bold>
</td>
<td valign="top" align="left">XLA (X-linked agammaglobulinemia)</td>
<td valign="top" align="left">
<italic>BTK</italic>
</td>
<td valign="top" align="left">Germline X-Linked</td>
<td valign="top" align="left">LoF, decreased BTK expression resulting in impaired B cel maturation</td>
<td valign="top" align="left">Sinopulmonary infections by encapsulated bacteria</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B68">68</xref>&#x2013;<xref ref-type="bibr" rid="B70">70</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">APDS1</td>
<td valign="top" align="left">
<italic>PIK3CD</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">GoF, mutations activate class Ia PI3K resulting in PIP3 formation resulting in T cell senescence, mTOR activation, impaired humoral immunity</td>
<td valign="top" align="left">CVID with EBV susceptibility, autoimmunity and lymphoproliferation</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B71">71</xref>, <xref ref-type="bibr" rid="B72">72</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">CD21 deficiency</td>
<td valign="top" align="left">
<italic>CD21</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, mutations result in absent CD21 expression, reduced antigen enhancement</td>
<td valign="top" align="left">Recurrent respiratory tract infections</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B73">73</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">IKAROS haploinsufficiency</td>
<td valign="top" align="left">
<italic>IKZF1</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, mutations cause haploinsufficiency resulting in B cell maturation defect</td>
<td valign="top" align="left">CVID, recurrent sinopulmonary infections</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B74">74</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">NFKB1 haploinsufficiency</td>
<td valign="top" align="left">
<italic>NFKB1</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, mutations cause haploinsufficiency (no expression of mutant allele or dysfunction mutant p105/p50) resulting in impaired canonical NF-kB activation and NLRP3 inflammasome activation</td>
<td valign="top" align="left">CVID with infectious susceptibility, autoimmunity &#x2013; autoinflammation, lymphoproliferation and malignancy</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B6">6</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">NFKB2 haploinsufficiency</td>
<td valign="top" align="left">
<italic>NFKB2</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, mutations cause haploinsufficiency, impaired non-canonical NF-kB activation</td>
<td valign="top" align="left">Recurrent respiratory tract infections, bronchiectasis. Endocrinopathies, autoimmunity in childhood.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B75">75</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">TACI deficiency</td>
<td valign="top" align="left">
<italic>TNFRSF13B</italic>
</td>
<td valign="top" align="left">Germline dominant/recessive</td>
<td valign="top" align="left">LoF, mutations cause haploinsufficiency leading to decreased B cell responsiveness and impaired B cell central tolerance</td>
<td valign="top" align="left">Variable phenotype of CVID with infectious susceptibility to autoimmunity</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B76">76</xref>, <xref ref-type="bibr" rid="B77">77</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">BAFF-R deficiency</td>
<td valign="top" align="left">
<italic>TNFRSF13C</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, absent BAFF-R expression</td>
<td valign="top" align="left">CVID , increased infectious susceptibility</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B78">78</xref>)</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">CARD11 LOF or GOF (BENTA disease)</td>
<td valign="top" rowspan="2" align="left">
<italic>CARD11</italic>
</td>
<td valign="top" rowspan="2" align="left">Germline dominant/recessive</td>
<td valign="top" align="left">LoF, hypomorphic or dominant negative , impaired TCR induced NF-kB activation</td>
<td valign="top" align="left">LOF: CVID, atopy, cutaneous viral infections, neutropenia</td>
<td valign="top" rowspan="2" align="center"> (<xref ref-type="bibr" rid="B79">79</xref>, <xref ref-type="bibr" rid="B80">80</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">GoF, mutations cause spontaneous aggregation of signaling clusters with BCL10, MALT1 and active IKK causing constitutive NF-kB activation</td>
<td valign="top" align="left">BENTA disease: B cell lymphocytosis, lymphoma and susceptibility to mollusca contagiosum</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Additional clinical and immunological features can be found in (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2_1_2">
<title>PIK3CD</title>
<p>GOF mutations in <italic>PIK3CD</italic> lead to activated phosphoinositide 3-kinase (PI3K) delta syndrome (APDS) type 1. They can be found in patients allegedly categorized as adult-onset CVID with Epstein-Barr virus (EBV) susceptibility, autoimmunity and lymphoproliferation. <italic>PIK3CD</italic> encodes the catalytic subunit (PI3K delta) of a class Ia PI3K, which is expressed in leukocytes and catalyzes the production of the second messenger phosphatidylinositol (3,4,5)-triphosphate (PIP3). GOF mutations in this catalytic subunit result in excessive production of PIP3, leading to activation of the mechanistic target of rapamycin (mTOR) pathway and other kinase complexes such as BTK and inducible T cell kinase (ITK) (<xref ref-type="bibr" rid="B83">83</xref>). Subsequently, this results in T cell senescence, lymphoproliferation and impaired antibody responses (<xref ref-type="bibr" rid="B83">83</xref>). Adult diagnosed cases were first observed in a large cohort (n=53) of ADPS patients, although adult-onset phenotypes were considered exceptional (<xref ref-type="bibr" rid="B71">71</xref>). Five patients (9.4%) were diagnosed in adulthood, one suffered recurrent respiratory tract infections and a local granulomatous skin reaction in response to BCG vaccination in childhood, one was evaluated for chronic cervical lymphadenopathy, two had bronchiectasis and one was asymptomatic. No further details on the disease onset was provided (<xref ref-type="bibr" rid="B71">71</xref>). In the European Society for Immunodeficiencies (ESID) APDS registry compiling 51 APDS1 patients, most had disease-onset before the age of 15, but also here adult-onset cases are reported (<xref ref-type="bibr" rid="B72">72</xref>). One APDS1 case developed symptoms at the age of 27, although recurrent upper respiratory infections during adolescence might suggest earlier-onset of disease (<xref ref-type="bibr" rid="B84">84</xref>).</p>
<p>A second type of APDS (APDS2) is caused by autosomal recessive LOF mutations in <italic>PIK3R1</italic> encoding the regulatory subunit of class Ia PI3K. APDS2 patients present at infancy with severe bacterial infections and autoimmunity, adult-onset cases have not yet been reported.</p>
</sec>
</sec>
<sec id="s3_2_2">
<title>3.2.2 CVID</title>
<sec id="s3_2_2_1">
<title>CD21</title>
<p>CD21 is part of the B cell receptor complex. It recognizes complement component 3d (C3d)-opsonized immune complexes and enhances antigen-specific B cell responses. A compound heterozygous mutation, resulting in complete loss of CD21 surface expression, has been described in one adult with recurrent infections, reduced class-switched memory B cells and hypogammaglobulinemia (<xref ref-type="bibr" rid="B73">73</xref>). He had frequent childhood respiratory tract infections, resolving after tonsillectomy at the age of 6 years, followed by an asymptomatic period of 20 years.</p>
</sec>
<sec id="s3_2_2_2">
<title>IKZF1</title>
<p>
<italic>IKZF1</italic> encodes IKAROS, a transcription factor belonging to the Ikaros zinc finger transcription factor family, essential for the regulation of lymphocyte differentiation, especially of the B cell lineage (<xref ref-type="bibr" rid="B85">85</xref>). The first case of heterozygous mutations in <italic>IKZF1</italic> causing haploinsufficiency and a phenotype reminiscent of CVID was reported in 2016 (<xref ref-type="bibr" rid="B74">74</xref>). Eight out of 29 patients had an adult-onset phenotype (19-57 years, all had infections as presenting symptom) and most of them (n=6) were reported within one family with a 4.7 Mb deletion including <italic>IKZF1</italic> on chromosome 7 (in contrast to other families with missense mutations or a very small deletion within the IKZF1 gene). Slowly progressive loss of B cells over time in IKAROS deficiency could provide an explanation for late-onset phenotypes. Aging has been associated with impaired B cell development in the bone marrow, and a mutation in a gene essential for B cell differentiation, such as IKAROS, might accelerate this process (<xref ref-type="bibr" rid="B86">86</xref>).</p>
</sec>
<sec id="s3_2_2_3">
<title>NFKB1</title>
<p>NFKB1 is one of the five nuclear factor kappa-light-chain-enhancer of activated B cells (NF-&#x3ba;B) proteins, encoding the p105 subunit. This is post-translationally processed into a p50 subunit, functioning as a transcriptional enhancer of NF-&#x3ba;B target genes when heterodimerized with RelA (p65). NFKB1 haploinsufficiency was first described in 2015 in three families with a CVID phenotype and incomplete penetrance. Within the families, the age of onset was highly variable (2 years to 65 years) with diverse phenotypes ranging from asymptomatic to CVID with malignancy, autoimmunity and bronchiectasis. All reported mutations (splice donor, deletion and frameshift) resulted in rapid degradation of the mutant transcript and residual p105/50 was expressed from the WT allele (<xref ref-type="bibr" rid="B87">87</xref>). NFKB1 haploinsufficiency is considered one of the most frequent genetic causes of CVID (<xref ref-type="bibr" rid="B6">6</xref>). Incomplete penetrance is prototypical and adult-onset disease is frequently observed (<xref ref-type="bibr" rid="B6">6</xref>).</p>
</sec>
<sec id="s3_2_2_4">
<title>NFKB2</title>
<p>Like NFKB1, NFKB2 is one of the five NF-&#x3ba;B proteins, encoding the p100 protein, which is post-translationally processed to a p52 protein. In contrast to p50 which plays a key role in the canonical NF-&#x3ba;B pathway, p52 functions as transcription factor in the non-canonical NF-&#x3ba;B pathway which is important in lymphoid organ development, B and T cell maturation, thymic selection and innate antiviral immunity (<xref ref-type="bibr" rid="B75">75</xref>). In a recent review summarizing clinical features on 50 reported patients with NFKB2 haploinsufficiency, 2 were reported as adult-onset (31 and 48 years) and had recurrent respiratory tract infections and bronchiectasis (<xref ref-type="bibr" rid="B75">75</xref>).</p>
</sec>
<sec id="s3_2_2_5">
<title>TNFRSF13B</title>
<p>
<italic>TNFRSF13B</italic> encodes the transmembrane activator and calcium modulator and cyclophilin ligand interactor (TACI) belonging to the Tumor necrosis factor (TNF) receptor superfamily. This receptor is mainly expressed on B cells and its activation by ligands such as a proliferation-inducing ligand (APRIL) or B-cell activating factor (BAFF) activates a signaling cascade that is involved in B cell differentiation, removal of autoreactive B cells, immunoglobulin production and class switching. Both heterozygous and homozygous LOF mutations have been linked to adult-onset CVID and can be found in 5-10% of CVID patients (<xref ref-type="bibr" rid="B76">76</xref>). Heterozygous mutations are associated with autoimmunity and lymphoproliferation, more than biallelic mutations, possibly because B cells are still partially responsive to allow for autoimmune complications (<xref ref-type="bibr" rid="B77">77</xref>). Its role as a monogenic cause of IEI has been debated and a role as a modifier gene in CVID postulated (<xref ref-type="bibr" rid="B88">88</xref>).</p>
</sec>
<sec id="s3_2_2_6">
<title>TNFRSF13C</title>
<p>
<italic>TNFRSF13C</italic> encodes the BAFF factor receptor (BAFF-R). Similar to TACI it belongs to the TNF receptor superfamily, and is mainly expressed on B-cells. Upon binding of its ligand, downstream pathways are activated that regulate B cell survival and maturation. BAFF-R deficiency has been described in two adult-onset (37 and 70 years) CVID patients carrying a homozygous LOF deletion in <italic>TNFRSF13C</italic> resulting in absent expression (<xref ref-type="bibr" rid="B78">78</xref>). They presented with respiratory tract infections associated with profound B cell lymphopenia and low number of switched memory B cells.</p>
</sec>
<sec id="s3_2_2_7">
<title>CARD11</title>
<p>CARD11 is a scaffold protein that plays a role in TCR and BCR signaling by linking antigen recognition to NF-&#x3ba;B in lymphocytes (<xref ref-type="bibr" rid="B79">79</xref>, <xref ref-type="bibr" rid="B89">89</xref>). Mutations in CARD11 can lead to a variety of clinical phenotypes depending on the nature of the mutation (LOF or GOF). In case of LOF, biallelic null mutations result in combined immunodeficiency in childhood. Hypomorphic variants or dominant negative mutations are linked to a milder phenotype that predisposes to a variable immunodeficiency and atopy (<xref ref-type="bibr" rid="B79">79</xref>, <xref ref-type="bibr" rid="B89">89</xref>, <xref ref-type="bibr" rid="B90">90</xref>). In a study containing 48 patients with dominant negative CARD11 mutations, three of them were reported with disease onset at 18 years or older (<xref ref-type="bibr" rid="B79">79</xref>). One woman had onset at 20 years of age and suffered from neutropenia, hypogammaglobulinemia and indolent LGL. Another patient was 18 years old and apart from atopic disease, she also suffered from bronchiectasis and mollusca contagiosum. Lastly, a female carrying a compound heterozygous mutation was identified with disease onset in her mid-twenties when she developed recurrent bacterial sinopulmonary tract infections and hypogammaglobulinemia. The mutations (p.R47H and p.R187P) carried by the first two patients were shown to exert a dominant negative effect by interfering with WT CARD11, resulting in decreased NF-&#x3ba;B signaling. The last patient carried a compound heterozygous LOF mutation (p.R912Q and p.D1152N). In case of a germline GOF mutation, a B cell lymphoproliferative disorder known as B cell Expansion with NF-&#x3ba;B and T cell Anergy (BENTA) can occur. Patients with BENTA often present with susceptibility to molluscum contagiosum and polyclonal B cell lymphocytosis (<xref ref-type="bibr" rid="B91">91</xref>). Although often seen shortly after birth or in childhood, a clinically asymptomatic adult individual has been reported (<xref ref-type="bibr" rid="B80">80</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s3_3">
<title>3.3 Diseases of Immune Dysregulation</title>
<sec id="s3_3_1">
<title>3.3.1 Familial Hemophagocytic Lymphohistiocytosis</title>
<p>Familial hemophagocytic lymphohistiocytosis (fHLH) represents a group of immune dysregulation disorders associated with uncontrolled activation of histiocytes and T cells. The pathogenesis of fHLH centers around the impaired cytolytic function of natural killer (NK) cells and cytotoxic T cells, which hinders the clearance of antigens and eventually results in a hyperinflammatory state (i.e. cytokine storm) (<xref ref-type="bibr" rid="B118">118</xref>). Classical symptoms include cytopenia, prolonged fevers, hepatosplenomegaly, hypertriglyceridemia, hyperferritinemia and neurological disease. The diagnosis of fHLH can be established using the HLH-2004 criteria (<xref ref-type="bibr" rid="B119">119</xref>). Several defects in genes important for cytolytic function have been validated as cause of fHLH and some of them (described below) were unmasked after a first episode in adulthood (<xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>).</p>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>Genes associated with adult-onset diseases of immune dysregulation.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Disease</th>
<th valign="top" align="center">Genetic defect</th>
<th valign="top" align="center">Inheritance</th>
<th valign="top" align="center">Functional defect</th>
<th valign="top" align="center">Phenotype (key features)</th>
<th valign="top" align="center">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="10" align="left">
<bold>DISEASES OF IMMUNE DYSREGULATION</bold>
</td>
<td valign="top" align="left">FLH2 (Familial Hemophagocytic Lymphohistiocytosis 2)</td>
<td valign="top" align="left">
<italic>PRF1</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, lower/absent expression of perforin leading to defective perforin-dependent cytotoxic pathway and decreased NK and CTL function.</td>
<td valign="top" align="left">HLH</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B92">92</xref>&#x2013;<xref ref-type="bibr" rid="B94">94</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">FLH3 (Familial Hemophagocytic Lymphohistiocytosis 3)</td>
<td valign="top" align="left">
<italic>UNC13D</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, defective cytotoxic granule exocytosis, leading to decreased NK and CTL function.</td>
<td valign="top" align="left">HLH</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B94">94</xref>&#x2013;<xref ref-type="bibr" rid="B96">96</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">FHL5 (Familial Hemophagocytic Lymphohistiocytosis 5)</td>
<td valign="top" align="left">
<italic>STXBP2</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, defective granule exocytosis in NK and CTL.</td>
<td valign="top" align="left">HLH</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B94">94</xref>, <xref ref-type="bibr" rid="B97">97</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">BRIDA (BACH2-related immunodeficiency and autoimmunity)</td>
<td valign="top" align="left">
<italic>BACH2</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, haploinsufficiency</td>
<td valign="top" align="left">CVID, colitis, recurrent respiratory tract infections.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B98">98</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">CTLA-4 haploinsufficiency</td>
<td valign="top" align="left">
<italic>CTLA-4</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, haploinsufficiency</td>
<td valign="top" align="left">Hypogammaglobulinemia, susceptibility to infections, autoimmune manifestations.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B99">99</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">APECED (Autoimmune Polyendocrinopathy Candidiasis Ectodermal dystrophy)</td>
<td valign="top" align="left">
<italic>AIRE</italic>
</td>
<td valign="top" align="left">Germline dominant/recessive</td>
<td valign="top" align="left">LoF, dominant negative mutations in PHD1 domain, causing mutant protein to form non-functional homo-oligomers by associating with WT AIRE. LoF, recessive,</td>
<td valign="top" align="left">Mucocutaneous candidiasis, hypoparathyroidism, adrenocortical insufficiency, isolated organ-specific autoimmunity.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B100">100</xref>&#x2013;<xref ref-type="bibr" rid="B103">103</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">ALPS-FAS (Autoimmune Lymphoproliferative syndrome)</td>
<td valign="top" align="left">
<italic>FAS</italic>
</td>
<td valign="top" align="left">Germline dominant/somatic</td>
<td valign="top" align="left">LoF, ICD mutations: dominant negative effect on WT protein. ECD mutations: haploinsufficiency. Disturbed lymphocyte homeostasis through defective apoptosis.</td>
<td valign="top" align="left">Non-malignant lymphoproliferation, lymphadenopathies, splenomegaly, increased risk for lymphoma, increased DNT, cytopenias</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B104">104</xref>&#x2013;<xref ref-type="bibr" rid="B107">107</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">XMEN (X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection, and neoplasia)</td>
<td valign="top" align="left">
<italic>MAGT1</italic>
</td>
<td valign="top" align="left">X-linked</td>
<td valign="top" align="left">LoF, disturbed N-linked glycosylation, affecting function of MAGT1-dependent immunoglycoproteins.</td>
<td valign="top" align="left">Immune dysregulation, chronic EBV infection, EBV-related lymphoproliferation, autoimmune cytopenias, magnesium defect, splenomegaly, liver abnormalities, intellectual disability.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B108">108</xref>&#x2013;<xref ref-type="bibr" rid="B110">110</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">X-linked lymphoproliferative syndrome 1 (XLP-1)</td>
<td valign="top" align="left">
<italic>SH2D1A</italic>
</td>
<td valign="top" align="left">X-linked</td>
<td valign="top" align="left">LoF, resulting in disturbed SAP-mediated signal transduction.</td>
<td valign="top" align="left">Susceptibility to EBV infections, HLH, dysgammaglobulinemia, lymphoma.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B111">111</xref>&#x2013;<xref ref-type="bibr" rid="B114">114</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">X-linked lymphoproliferative syndrome 2 (XLP-2)</td>
<td valign="top" align="left">
<italic>XIAP</italic>
</td>
<td valign="top" align="left">X-linked</td>
<td valign="top" align="left">LoF, resulting in increased sensitivity to apoptosis and disturbing XIAP-mediated signaling.</td>
<td valign="top" align="left">Susceptibility to EBV infections, HLH, hypogammaglobulinemia, lymphoma, IBD, splenomegaly.</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B115">115</xref>&#x2013;<xref ref-type="bibr" rid="B117">117</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Additional clinical and immunological features can be found in (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</table-wrap-foot>
</table-wrap>
<sec id="s3_3_1_1">
<title>PRF1</title>
<p>
<italic>PRF1</italic> encodes perforin, highly expressed by cytotoxic T and NK cells. Perforin is a pore forming protein involved in cell death. A case study reports on an adult Japanese patient presenting with a first episode of HLH at the age of 62 years (<xref ref-type="bibr" rid="B92">92</xref>). Genetic analysis on PBMCs and nails revealed a germline compound heterozygous <italic>PRF1</italic> mutation (p.L364fs and p.V306I). The compound heterozygous mutation was hypomorphic as observed by the decreased but not abolished perforin expression <italic>in vitro</italic>. Another report from 2002 describes 2 siblings (brother and sister) who presented at the age of 21 and 22, respectively, with a first episode of HLH (<xref ref-type="bibr" rid="B93">93</xref>). HLH was preceded by a respiratory tract infection in one sibling and a diagnosis of T cell lymphoblastic lymphoma in the other sibling. Both of them carried a compound heterozygous mutation resulting in a missense (p.A91V) and stop mutation (p.W374*) in <italic>PRF1</italic> with decreased perforin expression. Lastly, one of the largest cohorts to date studying 175 adult patients (out of a total of 1531 patients who were referred for suspected HLH), observed genetic defects in <italic>PRF1</italic> in 18 of them (age 18-75 years) (<xref ref-type="bibr" rid="B94">94</xref>). Of the patients with available perforin expression, only 1 had absent perforin expression, while 6 had low expression and 2 had normal expression (in the presence of an <italic>in silico</italic> predicted pathogenic heterozygous mutation). In conclusion, adult-onset presentation is associated with hypomorphic <italic>PRF1</italic> variants leading to decreased but not abolished perforin activity in most patients and/or requires an additional trigger such as infections or malignancy, similar to secondary HLH.</p>
</sec>
<sec id="s3_3_1_2">
<title>STXBP2</title>
<p>
<italic>STXBP2</italic> encodes syntaxin-binding protein 2, which plays a role in the regulation of intracellular granule trafficking in neutrophils, NK cells and mast cells. Almost all reported patients presented during the neonatal period or in early infancy. In a case series by Meeths et&#xa0;al. reporting on 8 patients, the oldest patient presented at the age of 17 and HLH was preceded by an EBV infection (<xref ref-type="bibr" rid="B97">97</xref>). She carried compound heterozygous mutations in <italic>STXBP2</italic> resulting in a missense (p.S545L) and stop (p.Q432*). NK cell cytolytic activity and degranulation were both impaired. In the cohort described by Zhang et&#xa0;al., one patient had disease onset at 24 years of age. He was found to carry a homozygous mutation (c.1782*12G&gt;A) in the 3&#x2019;UTR of the <italic>STXBP2</italic> gene (<xref ref-type="bibr" rid="B94">94</xref>). He had significant decreased NK cell cytotoxic function and perforin activity suggesting a partial defect. Although very rarely reported in general in association with fHLH, mutations in <italic>STXBP2</italic> should be considered when assessing adult patients with HLH.</p>
</sec>
<sec id="s3_3_1_3">
<title>UNC13D</title>
<p>
<italic>UNC13D</italic> encodes the Munc13-4 protein which has a priming function for cytotoxic granules secretion before fusing to the vesicle membrane (<xref ref-type="bibr" rid="B95">95</xref>). The first report described patients from 7 families with infancy or adolescence onset of fHLH (1.5 months &#x2013; 13 years) caused by homozygous or compound heterozygous LOF (frameshift, stop or deletions) mutations in <italic>UNC13D</italic>. These mutations resulted in defective release of lytic enzymes from T cell receptor activated lymphocytes (<xref ref-type="bibr" rid="B95">95</xref>). Rohr et&#xa0;al. described 1 patient with a first HLH episode at 34 years carrying a compound heterozygous mutation (missense and frameshift leading to a premature stop) (<xref ref-type="bibr" rid="B96">96</xref>). Zhang et&#xa0;al. identified 7 adult-onset fHLH (18 &#x2013; 30 years) associated with eight <italic>UNC13D</italic> variants (5 missense, 2 splice site and 1 intronic) not reported in healthy controls either in heterozygous or compound heterozygous state (<xref ref-type="bibr" rid="B94">94</xref>). Two out of three patients (both with a heterozygous c.753 +3G&gt;A splice site mutation) tested for NK cell function <italic>in vitro</italic> had absent cytotoxic activity. However, for some mutations, <italic>in silico</italic> scores predicted a benign effect of the mutation (p.E725G, p.S747N) or mutations were located in non-conserved regions (p.R527W, p.S747N), despite being absent in healthy controls. Therefore, given the lack of functional validation, it remains unclear whether all of these mutations are causative for fHLH.</p>
</sec>
</sec>
<sec id="s3_3_2">
<title>3.3.2 Regulatory T Cell Defects</title>
<sec id="s3_3_2_1">
<title>BACH2</title>
<p>BACH2 is a transcription factor in T- and B-lymphocytes that regulates differentiation and maturation, and is important in the suppression of inflammation (<xref ref-type="bibr" rid="B98">98</xref>, <xref ref-type="bibr" rid="B120">120</xref>).</p>
<p>BACH2-related immunodeficiency with autoimmunity (BRIDA) is a recently discovered disorder caused by LOF mutations in the <italic>BACH2</italic>, resulting in haploinsufficiency (<xref ref-type="bibr" rid="B98">98</xref>). Afzali et&#xa0;al. (<xref ref-type="bibr" rid="B98">98</xref>) discovered two LOF mutations that have been predicted to disrupt protein stability and prevent dimerization (p.L28K) or interfere with protein localization in the nucleus by aggregation in the cytoplasm (p.E788K). All patients suffered from inflammatory bowel disease-like symptoms and recurrent respiratory tract infections which was attributed to CVID. In two out of three patients (one carrying the p.L28K-mutation and the other carrying the p.E778K-mutation) disease onset was in childhood, while the third patient (harboring the p.E788K-mutation) developed symptoms in the sixth decade. This suggests a variability in clinical phenotype, with the possibility of adult-onset disease (<xref ref-type="bibr" rid="B98">98</xref>).</p>
</sec>
<sec id="s3_3_2_2">
<title>CTLA4</title>
<p>CTLA4 is a surface molecule expressed on T cells, which binds to B7 molecules on antigen presenting cells (APC), thereby competing with the co-stimulatory molecule CD28. As a result, suppressive functions of regulatory T cells (Tregs) are stimulated and proliferation of effector T cells is inhibited (<xref ref-type="bibr" rid="B99">99</xref>). CTLA4 haploinsufficiency, caused by LOF mutations in <italic>CTLA4</italic>, was first described in 2014 in families with AD inherited form of immune dysregulation, characterized by hypogammaglobulinemia, infectious susceptibility and auto-immunity (<xref ref-type="bibr" rid="B99">99</xref>, <xref ref-type="bibr" rid="B121">121</xref>). As for most other monogenic diseases caused by haploinsufficiency, penetrance was incomplete and adult-onset symptoms (up to 40 years of age at disease onset) were common (<xref ref-type="bibr" rid="B8">8</xref>). Functionally CTLA4 haploinsufficiency led to impaired transendocytosis and suppressive activity of Treg cells, explaining the susceptibility to autoimmunity (<xref ref-type="bibr" rid="B99">99</xref>). The largest cohort to date of CTLA4 haploinsufficiency describes 133 patients from 54 different families, of whom 12 (9.0%) had symptoms after the age of 18 years (18-59 years) (<xref ref-type="bibr" rid="B5">5</xref>). Both unaffected and affected members had a similar cellular penetrance <italic>in vitro</italic>, suggesting that additional factors (hitherto not identified) influence the clinical phenotype and disease onset.</p>
</sec>
</sec>
<sec id="s3_3_3">
<title>3.3.3 Autoimmunity With or Without Lymphoproliferation</title>
<sec id="s3_3_3_1">
<title>AIRE</title>
<p>Autoimmune polyglandular syndrome type 1 (APS-1) is a disease characterized by a classic triad of chronic mucocutaneous candidiasis (CMC), hypothyroidism and adrenocortical insufficiency (two of three criteria need to be present for a clinical diagnosis). APS-1 is caused by autosomal recessive mutations in <italic>AIRE</italic>, encoding a protein expressed in thymic medullary epithelial cells which mediates the ectopic expression of tissue restricted proteins to developing T cells. It is essential to regulate self-tolerance and promotes the negative selection of autoreactive T cells, which can cause autoimmunity (<xref ref-type="bibr" rid="B122">122</xref>). AIRE deficiency patients reported in large cohorts from different countries (<xref ref-type="bibr" rid="B100">100</xref>, <xref ref-type="bibr" rid="B101">101</xref>, <xref ref-type="bibr" rid="B123">123</xref>) often have infancy onset symptoms, but are mostly diagnosed in later life when cumulative autoimmune phenomena alert physicians for monogenic causes. Autoimmune manifestations in adulthood in the context of recessive mutations is very rare and careful history for milder manifestations in infancy is important. In contrast to recessive mutations, dominant negative mutations in <italic>AIRE</italic> are commonly associated with organ specific autoimmunity (pernicious anemia, vitiligo, autoimmune thyroiditis) presenting in adulthood (for adults range 21-81 years in Oftedal et&#xa0;al.) (<xref ref-type="bibr" rid="B102">102</xref>, <xref ref-type="bibr" rid="B103">103</xref>). Some of the mutation carriers are even asymptomatic with or without the presence of autoantibodies (<xref ref-type="bibr" rid="B102">102</xref>). Dominant negative mutations are clustered within the plant homeodomain of the AIRE protein, preventing the binding of AIRE to histone H3, thereby negatively impacting its transcription and transactivation activity. The dominant negative effect can be explained by the fact that AIRE functions as a homotetramer. Incomplete penetrance occurs because the formation of WT AIRE tetramer is still possible and can be sufficient to induce self-tolerance in some individuals. In addition, the strength of the dominant negative effect also correlates with the location of the mutation in the PHD domain, accounting for the phenotypical diversity (<xref ref-type="bibr" rid="B102">102</xref>).</p>
</sec>
</sec>
<sec id="s3_3_4">
<title>3.3.4 Autoimmune Lymphoproliferative Syndrome</title>
<p>ALPS is a disease characterized by benign lymphoproliferation, autoimmunity (mostly cytopenias), susceptibility to lymphomas and a high proportion of double negative T cells (DNT) due to a defective lymphocyte homeostasis by inherited defects in apoptosis genes (<xref ref-type="bibr" rid="B104">104</xref>). Clinical diagnosis is guided by available criteria (<xref ref-type="bibr" rid="B124">124</xref>) and further classification in subtypes is based on genetic analysis (gene and mode of inheritance): ALPS FAS (<italic>FAS</italic> homozygous or heterozygous, germline), ALPS-sFAS (<italic>FAS</italic>, somatic), ALPS-FASLG (<italic>FASLG</italic>, germline), ALPS-CASP10 (<italic>CASP10</italic>, germline) or ALPS-U (unknown genetic defect but meets diagnostic criteria) (<xref ref-type="bibr" rid="B124">124</xref>). To our knowledge, only ALPS-FAS, ALPS-sFAS have been observed in adult-onset presentations.</p>
<sec id="s3_3_4_1">
<title>FAS</title>
<p>The majority of ALPS patients have a genetic defect in <italic>FAS</italic>, encoding a member of the TNF-superfamily, which is expressed as a homotrimer on B and T cells and essential in the regulation of apoptosis (<xref ref-type="bibr" rid="B124">124</xref>). In contrast to recessive mutations in FAS, only found in a minority of ALPS patients, heterozygous germline mutations either leading to a mutant FAS protein (with dominant negative action) or decreased FAS protein expression (haploinsufficiency) are more frequently encountered and associate with an early-onset disease (infancy life) but incomplete penetrance (&lt;60%) (<xref ref-type="bibr" rid="B105">105</xref>). The penetrance correlates with the location of the mutation in the protein structure (lower in the extracellular compared to intracellular domain, because mutations in the extracellular domain mostly led to haploinsufficiency) (<xref ref-type="bibr" rid="B105">105</xref>). In a cohort of 90 patients with ALPS-(s)FAS, 7% of affected patients had adult-onset disease (range 18-35 years) with a milder form of lymphoproliferation (<xref ref-type="bibr" rid="B106">106</xref>). These patients had more combined germline and somatic mutations or germline mutations in the extracellular domain compared to patients with early-onset disease. The somatic mutation was either acquired on the second <italic>FAS</italic> allele or occurred through somatic uniparental disomy (a situation where both chromosomes are derived from 1 parent). Somatic mutations detected in <italic>FAS</italic> in DNT cells (either dominant negative or haploinsufficiency) were also described in other reports of ALPS-sFAS in adults (43 and 48 years at disease onset) (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B107">107</xref>).</p>
</sec>
</sec>
<sec id="s3_3_5">
<title>3.3.5 Susceptibility to EBV and Lymphoproliferative Conditions</title>
<sec id="s3_3_5_1">
<title>MAGT1</title>
<p>
<italic>MAGT1</italic> is located on the X-chromosome and encodes the magnesium transporter 1, that has a dual function as a plasma membrane magnesium transporter and as a subunit of the endoplasmic reticulum localized oligosaccharyltransferase complex (<xref ref-type="bibr" rid="B125">125</xref>). Hemizygous LOF mutations can result in a XMEN syndrome (X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection, and neoplasia) in males, whereas female carriers are unaffected. The pathogenesis is most likely related to a defective N-glycosylation of key T and NK cell receptors, impairing their function or leading to rapid degradation (<xref ref-type="bibr" rid="B108">108</xref>, <xref ref-type="bibr" rid="B109">109</xref>), although defective magnesium influx leading to impaired downstream signaling upon TCR stimulation was also observed in XMEN patients (<xref ref-type="bibr" rid="B110">110</xref>). In the first report, adult-onset (45 years) was described in one patient with EBV driven lymphoma (<xref ref-type="bibr" rid="B110">110</xref>). Other adult-onset lymphomas have been reported in later reports (<xref ref-type="bibr" rid="B109">109</xref>).</p>
</sec>
<sec id="s3_3_5_2">
<title>SH2D1A</title>
<p>X-linked lymphoproliferative syndrome 1 (XLP-1) is a clinically heterogeneous disorder caused by hemizygous mutations in the <italic>SH2D1A</italic> gene, that is characterized by extreme susceptibility to EBV infection, HLH, dysgammaglobulinemia and malignant lymphoma (<xref ref-type="bibr" rid="B111">111</xref>, <xref ref-type="bibr" rid="B126">126</xref>, <xref ref-type="bibr" rid="B127">127</xref>). <italic>SH2D1A</italic> encodes SAP (signaling lymphocyte activation molecule (SLAM)-associated protein), which is a cytosolic protein that plays an indispensable role in the signal transduction of T cells, NK cells and Natural killer T lymphocytes (NKT) cells (<xref ref-type="bibr" rid="B112">112</xref>, <xref ref-type="bibr" rid="B128">128</xref>). The clinical phenotype is very variable, and although pediatric onset is most common, adult-onset with lymphoma or HLH as primary manifestation has been described (<xref ref-type="bibr" rid="B111">111</xref>, <xref ref-type="bibr" rid="B113">113</xref>, <xref ref-type="bibr" rid="B114">114</xref>, <xref ref-type="bibr" rid="B129">129</xref>). In a large cohort study of Booth et&#xa0;al. (<xref ref-type="bibr" rid="B111">111</xref>), onset of disease in EBV+ patients ranged from 8 months to 40 years (median 4 years), and in EBV- patients from birth to 31 years (median 3.5 years). So even in the absence of EBV infection, disease was observed in adulthood, meaning that other factors than EBV can influence disease onset. Similarly, a recent case report of a 21-year-old male presenting with EBV+ HLH showed presence of a pathogenic variant in <italic>SH2D1A</italic> (p.E17K), leading to a normally expressed mutant protein with diminished binding to phosphorylated 2B4 receptor (important for NK-cell activation) (<xref ref-type="bibr" rid="B114">114</xref>). His siblings carrying the same mutation were unaffected, even after encountering EBV infection. Again, EBV was not a determinant for disease onset. Another report supporting role for genetic confounders comes from Liang et&#xa0;al., describing a 44-year-old female patient presenting with HLH and NK cell leukemia. She harbored a mutation (p.A3S) in the SH domain of SAP, resulting in absent protein expression (<xref ref-type="bibr" rid="B129">129</xref>). Targeted sequencing revealed a 28.7% mutant/WT ratio suggestive for a somatic mutation, although this was not confirmed by investigating the presence of the mutation in non-hematopoietic tissue. Somatic mosaicism in combination with X linked skewing (XCI) could explain why this patient had an adult-onset phenotype, but this was not investigated (<xref ref-type="bibr" rid="B129">129</xref>).</p>
</sec>
<sec id="s3_3_5_3">
<title>XIAP</title>
<p>Another less frequent cause of an XLP (XLP-2) is caused by deficiency of the X-linked inhibitor of apoptosis (XIAP) (<xref ref-type="bibr" rid="B115">115</xref>). XIAP is an important inhibitor of apoptosis that is expressed in different hematopoietic cells such as lymphocytes, myeloid cells and NK cells. Cells from XIAP-deficient patients are shown to have increased sensitivity to apoptosis and patients display almost absent numbers of NKT cells (<xref ref-type="bibr" rid="B115">115</xref>). Phenotypically it highly resembles XLP1, with the addition that splenomegaly is often the first presenting manifestation (<xref ref-type="bibr" rid="B115">115</xref>, <xref ref-type="bibr" rid="B130">130</xref>) and that XIAP deficiency is associated with inflammatory bowel disease (<xref ref-type="bibr" rid="B130">130</xref>). Rigaud et&#xa0;al. characterized a potential modifier gene that contributes to development of disease phenotype in patients harboring a hypomorphic mutation in <italic>XIAP</italic> (p.G466*) (<xref ref-type="bibr" rid="B116">116</xref>). In their study, patients carrying a co-segregated CD40-ligand (<italic>CD40L</italic>) polymorphism (p.G219R) in addition to the XIAP defect developed clinical disease manifestations, whereas patients harboring the hypomorphic XIAP mutation alone remained asymptomatic (<xref ref-type="bibr" rid="B116">116</xref>). The CD40L mutation was demonstrated to affect B cell differentiation and class switch recombination. Although non-random X-inactivation favoring the WT allele has been described (<xref ref-type="bibr" rid="B115">115</xref>), symptomatic female carriers have been identified (<xref ref-type="bibr" rid="B117">117</xref>). Aguilar et&#xa0;al. (<xref ref-type="bibr" rid="B117">117</xref>) described two heterozygous female patients carrying hypomorphic mutations in XIAP (p.H220Y and p.G466*) that developed inflammatory bowel disease at an adult age (32 years and 28 years). Both displayed a predominant expression of the mutant allele, suggesting that the hypomorphic nature of their XIAP mutations could have contributed to skewed X-inactivation towards the mutant or that the presence of a second undefined mutation gave a selection advantage (<xref ref-type="bibr" rid="B117">117</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s3_4">
<title>3.4 Defects in Intrinsic and Innate Immunity</title>

<p>Defects in intrinsic and innate immunity are categorized according to the specific pathogen susceptibility caused by genetic defects. Some of them are rarely or never seen in adults and therefore left out of the scope of this review (ND). Overall, 9 categories exist: a) mendelian susceptibility to mycobacterial disease (MSMD), b) epidermodysplasia verruciformis (ND), c) predisposition to severe viral infection (ND), d) herpes simplex encephalitis (HSE), e) invasive fungal infections, f) chronic mucocutaneous candidiasis, g) TLR signaling pathway deficiency with bacterial susceptibility, h) other inborn errors of immunity related to non-hematopoietic tissues and i) other inborn errors of immunity related to leukocytes (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>).</p>
<table-wrap id="T5" position="float">
<label>Table&#xa0;5</label>
<caption>
<p>Genes associated with adult-onset defects in intrinsic and innate immunity.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Disease</th>
<th valign="top" align="center">Genetic defect</th>
<th valign="top" align="center">Inheritance</th>
<th valign="top" align="center">Functional defect</th>
<th valign="top" align="center">Phenotype (key features)</th>
<th valign="top" align="center">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="10">
<bold>DEFECTS IN INTRINSIC AND INNATE IMMUNITY</bold>
</td>
<td valign="top" rowspan="2" align="left">IFNGR1 partial deficiency</td>
<td valign="top" rowspan="2" align="left">
<italic>IFNGR1</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, recessive hypomorphic variants, residual expression on cell surface with impaired response to IFN-&#x3b3;</td>
<td valign="top" rowspan="2" align="left">MSMD</td>
<td valign="top" rowspan="2" align="center"> (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B131">131</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, dominant negative mutations result in accumulation of non-functional truncated IFNGR1 impeding the normal function of IFNGR1 dimers</td>
</tr>
<tr>
<td valign="top" align="left">IL-12RB1 deficiency</td>
<td valign="top" align="left">
<italic>IL12RB1</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, no expression of IL12RB1 and impaired IL-12/IL-23 signaling</td>
<td valign="top" align="left">MSMD</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B132">132</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">STAT1 AD deficiency</td>
<td valign="top" align="left">
<italic>STAT1</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, complete or hypomorphic depending on the location and mechanism (impaired DNA binding of STAT1, impaired phosphorylation or both).</td>
<td valign="top" align="left">MSMD</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B133">133</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">TYK2 P1140A</td>
<td valign="top" align="left">
<italic>TYK2</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, lacks catalytic activity leading to impaired IL-23 signaling</td>
<td valign="top" align="left">MSMD</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B134">134</xref>, <xref ref-type="bibr" rid="B135">135</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">GATA2 deficiency</td>
<td valign="top" align="left">
<italic>GATA2</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, complex mechanism either leading to haploinsufficiency or mutation induced ectopic activities</td>
<td valign="top" align="left">Immunodeficiency (viral, fungal, MSMD infections), hematopoietic disorders</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B136">136</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">CARD9 deficiency</td>
<td valign="top" align="left">
<italic>CARD9</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, impaired cytokine production in response to fungal ligands, neutrophilic killing and Th17 immunity</td>
<td valign="top" align="left">Invasive fungal infections, CMC</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B137">137</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">STAT1 GOF</td>
<td valign="top" align="left">
<italic>STAT1</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">GoF, impacting STAT1 levels and phosphorylation status</td>
<td valign="top" align="left">CMC, viral and bacterial infections, invasive fungal infections, autoimmunity, humoral immunodeficiency</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B138">138</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">TLR3 deficiency</td>
<td valign="top" align="left">
<italic>TLR3</italic>
</td>
<td valign="top" align="left">Germline recessive or dominant</td>
<td valign="top" align="left">LoF, haploinsufficiency, hypomorphic or dominant negative, loss of expression or impaired signaling upon dsRNA stimulation</td>
<td valign="top" align="left">HSE</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B139">139</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">IRF4 deficiency</td>
<td valign="top" align="left">
<italic>IRF4</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, decreased DNA binding and ISRE induced transcription</td>
<td valign="top" align="left">Whipple disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B140">140</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Additional clinical and immunological features can be found in (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</table-wrap-foot>
</table-wrap>
<sec id="s3_4_1">
<title>3.4.1 Mendelian Susceptibility to Mycobacterial Disease</title>
<p>MSMD is characterized by predisposition to mycobacterial disease caused by weakly virulent mycobacteria in otherwise healthy individuals. Till present, all genes implied in MSMD play a direct or indirect role in the IFN-&#x3b3; dependent immunity, crucial to mycobacterial defense.</p>
<sec id="s3_4_1_1">
<title>IFNGR1</title>
<p>Mutations in the IFN-&#x3b3; receptor, composed of a heterodimer of IFNGR1 and IFNGR2, were the first described genetic defects in MSMD (<xref ref-type="bibr" rid="B3">3</xref>). Recessive mutations causing a complete deficiency without residual expression cause a severe infancy onset phenotype with life threatening mycobacterial (or some other intracellular bacteria such as Listeria and Salmonella spp.) and viral infections. Hypomorphic recessive LOF mutations in <italic>IFNGR1</italic> (although rarely seen in adulthood) or AD LOF mutations in <italic>IFNGR1</italic> causing a partial deficiency are associated with a milder phenotype and can be observed in later life (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B131">131</xref>).</p>
</sec>
<sec id="s3_4_1_2">
<title>IL12RB1</title>
<p>IL12RB1 is both part of the IL12R (in combination with IL12RB2) and of the IL23R (in combination with the IL23R), mediating IL-12 and IL-23 signaling. IL12RB1 deficiency, caused by recessive LOF mutations, is the most common genetic defect in MSMD. One of the largest cohorts studying 141 IL12RB1 deficient patients, observed an age of onset between 1 week to 31.7 years (mean age, 2.4 years, SD &#xb1; 4.9 years, range 2 weeks to 31.7 years) (<xref ref-type="bibr" rid="B132">132</xref>). Most of the cases were caused by BCG vaccination. Eight of the patients remained asymptomatic at the time of publication, even though the <italic>in vitro</italic> cellular penetrance was complete. Together this indicates that exposure to a specific pathogen most likely drives the age of onset in this immunodeficiency.</p>
</sec>
<sec id="s3_4_1_3">
<title>STAT1</title>
<p>STAT1 is an important transcriptional activator mediating cellular responses to pathogenic organisms, including mycobacteria. Both biallelic LOF mutations (complete or partial deficiency) characterized by severe viral and bacterial infections during infancy and monoallelic LOF or GOF mutations (discussed further) have been described. AD STAT1 deficiency due to LOF mutations has been observed in different kindreds with milder forms of MSMD and incomplete penetrance (<xref ref-type="bibr" rid="B133">133</xref>). In a 3 generation Indian kindred with MSMD, the oldest patient with a p.G250A LOF mutation in STAT1 was 36 years at disease onset (<xref ref-type="bibr" rid="B141">141</xref>). Mutations can have a complete or partial LOF effect depending on their location and whether DNA binding capacity, STAT1 phosphorylation or both is affected (<xref ref-type="bibr" rid="B3">3</xref>). Moreover, for all mutations the effect on IFN-&#x3b3; signaling is dominant negative in contrast to IFN-&#x3b1; and IFN-&#x3b2; signaling, explaining why most patients do not suffer from severe viral infections (<xref ref-type="bibr" rid="B3">3</xref>).</p>
</sec>
<sec id="s3_4_1_4">
<title>TYK2</title>
<p>TYK2 is a member of the JAK tyrosine kinase family and associates with multiple type I and II cytokine receptors. Recently, a genome wide study identified a common homozygous SNP in <italic>TYK2</italic> (p.P1104A) which is strongly enriched in European populations with a MAF of 4.2%, and is more prevalent in patients with tuberculosis (1%) compared to healthy individuals (0.2%) (<xref ref-type="bibr" rid="B134">134</xref>). Functionally this mutation was shown to carry a LOF effect by loss of TYK2 catalytic activity downstream of the IL23 receptor (<xref ref-type="bibr" rid="B135">135</xref>). Disease onset was highly variable (ranging from 1 to 40 years). Some patients received the BCG vaccine in early life without further complications and later developed pulmonary tuberculosis in adulthood, suggesting importance of pathogen virulence in addition to genetic susceptibility.</p>
</sec>
<sec id="s3_4_1_5">
<title>GATA2</title>
<p>
<italic>GATA2</italic> encodes a transcriptional regulator of multilineage hematopoiesis. AD inherited LOF mutations can cause GATA2 deficiency syndrome, characterized by immunodeficiency (viral, bacterial, fungal, MSMD), hematopoietic disorders such as myelodysplastic syndrome (MDS) or acute myeloid leukemia (AML) and lymphedema, and a highly variable penetrance manifesting from infancy to adult age (<xref ref-type="bibr" rid="B142">142</xref>). A possible hypothesis for this variable penetrance is that the trigger of this syndrome might be evoked by somatic mutations in other genes such as <italic>RUNX1, ETV6, CEBPA, ASXL1, SETBP1</italic> and <italic>STAG2</italic>, as they commonly occur together (<xref ref-type="bibr" rid="B142">142</xref>). However, clear evidence about their influence on the pathogenesis is currently lacking. A series of 79 patients in France and Belgium was described recently and mycobacterial disease was observed in 8.1% of patients as the first presenting symptom, most of them after the age of 20 (<xref ref-type="bibr" rid="B136">136</xref>). In addition, hematological manifestations were often the first manifestation, with 69% presenting with MDS and 9% with AML. The median onset of symptoms in their GATA2 deficiency cohort was 18.6 years, ranging from 0 to 61 years of age.</p>
</sec>
</sec>
<sec id="s3_4_2">
<title>3.4.2 Herpes Simplex Encephalitis</title>
<sec id="s3_4_2_1">
<title>TLR3</title>
<p>Toll like receptor 3 (TLR3) recognizes double stranded RNA (dsRNA), which is produced by most viruses including HSV type 1. In a cohort of 120 patients (both children and young adults), 6 pathogenic functionally validated <italic>TLR3</italic> variants were found in 6 patients (<xref ref-type="bibr" rid="B139">139</xref>). Three out of 6 patients had HSE episodes in adulthood and 1 of them had a first episode at the age of 24 years. LOF mutations can be inherited in a AD or recessive manner, and different mechanisms underly TLR3 deficiency (hypomorphic, haploinsufficiency or dominant negative effect). Not surprisingly the hypomorphic variant (p.R867Q) was found recessively in the patient with an adult-onset phenotype. The TLR3 expression was normal but functionally, the mutation led to an impaired signaling upon Poly(I:C) stimulation of primary fibroblasts and a TLR3-deficient cell line which was transfected with this mutant.</p>
</sec>
</sec>
<sec id="s3_4_3">
<title>3.4.3 Invasive Fungal Infections</title>
<sec id="s3_4_3_1">
<title>CARD9</title>
<p>
<italic>CARD9</italic> encodes an adaptor protein downstream of C-type lectin receptors that recognize fungal components. Mutations in CARD9 &#x2013; presumed LOF &#x2013; are associated with predisposition to mucocutaneous and invasive fungal disease (IFD). Functionally they can negatively impact cytokine production in response to fungal ligands, neutrophilic killing and Th17 immunity (<xref ref-type="bibr" rid="B137">137</xref>). A recent review on CARD9 deficiency evaluated 58 patients from 39 kindreds with disease causing recessive <italic>CARD9</italic> mutations (<xref ref-type="bibr" rid="B137">137</xref>). Fungi typically belonged to the phylum Ascomycota (including <italic>Candida</italic>, <italic>Trychophyton</italic>, <italic>Aspergillus</italic>) and most patients were affected by a single fungus Clinical penetrance was complete, although for patients with IFD most cases were adult-onset (median age 18 years, range 3.5-52 years). This is intriguing because in contrast to MSMD, colonization/exposure to fungi such as C. albicans begins very early in life (for C. albicans before the age of one in 50% of cases) (<xref ref-type="bibr" rid="B143">143</xref>).</p>
</sec>
</sec>
<sec id="s3_4_4">
<title>3.4.4 Chronic Mucocutaneous Candidiasis</title>
<sec id="s3_4_4_1">
<title>STAT1</title>
<p>AD GOF <italic>STAT1</italic> mutations lead to defective Th1 and Th17 responses with a reduced production of IFN-&#x3b3;, IL-17 and IL2, thereby leading to a phenotype of CMC, susceptibility to bacterial and viral infection and autoimmunity. The largest cohort till present studied 274 patients from 167 kindreds with STAT1 GOF mutations. Adult-onset was mostly seen in patients without CMC (n=6, range 4-61 year) whereas CMC often presented in early life (n=268, range birth-24 years) (<xref ref-type="bibr" rid="B138">138</xref>). Some patients might present first with mild auto-immune features such as autoimmune hypothyroidism, and then later in life during adulthood develop infectious complications such as CMC and severe viral infections with immunophenotypic abnormalities raising a suspicion for STAT1 GOF (<xref ref-type="bibr" rid="B144">144</xref>). Others may present in adulthood with IFD as the first manifestation or with multiple auto-immune or autoinflammatory features (such as Takayasu arteritis and inflammatory bowel disease) (<xref ref-type="bibr" rid="B145">145</xref>).</p>
</sec>
</sec>
<sec id="s3_4_5">
<title>3.4.5 Other Inborn Errors of Immunity Related to Leukocytes</title>
<sec id="s3_4_5_1">
<title>IRF4</title>
<p>IRF4 is a transcription factor with essential functions in lymphocytes including development, antibody affinity maturation and roles in effector T cells. In a family affected by Whipple disease with a mean age of 55 years at onset, a private p.R98W mutation in <italic>IRF4</italic> was identified, proven to be LOF <italic>in vitro</italic> based on its decreased ability to bind DNA and to induce transcription of interferon stimulated response element motif containing promotors compared to WT IRF4 (<xref ref-type="bibr" rid="B140">140</xref>). IRF4 deficiency was identified as an AD cause of Whipple disease with (unexplained) incomplete penetrance.</p>
</sec>
</sec>
</sec>
<sec id="s3_5">
<title>3.5 Autoinflammatory Disorders</title>

<sec id="s3_5_1">
<title>3.5.1 Interferonopathies</title>
<sec id="s3_5_1_1">
<title>CECR1</title>
<p>Deficiency of adenosine deaminase 2 (DADA2) was first described in 2014 in 9 patients with intermittent fever, systemic vasculopathy early-onset ischemic stroke (<xref ref-type="bibr" rid="B164">164</xref>), caused by recessive mutations in <italic>CECR1</italic> encoding ADA2. These mutations cause (near) complete absence of enzyme function resulting in elevated extracellular adenosine leading to dysregulated formation of neutrophilic extracellular traps, neutrophilic activation, polarization of macrophages from M2 to M1 subtype and increased proinflammatory cytokine production (<xref ref-type="bibr" rid="B165">165</xref>). Adult-onset cases have been documented in cohorts with idiopathic polyarteritis nodosa (<xref ref-type="bibr" rid="B160">160</xref>, <xref ref-type="bibr" rid="B161">161</xref>) without prior manifestations although a thorough history should always be taken for possible features in infancy which retrospectively can be connected to DADA2 (<xref ref-type="table" rid="T6">
<bold>Table&#xa0;6</bold>
</xref>) (<xref ref-type="bibr" rid="B166">166</xref>).</p>
<table-wrap id="T6" position="float">
<label>Table&#xa0;6</label>
<caption>
<p>Genes associated with adult-onset autoinflammatory diseases.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Disease</th>
<th valign="top" align="center">Genetic defect</th>
<th valign="top" align="center">Inheritance</th>
<th valign="top" align="center">Functional defect</th>
<th valign="top" align="center">Phenotype (key features)</th>
<th valign="top" align="center">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="11" align="left">
<bold>AUTOINFLAMMATORY DISEASES</bold>
</td>
<td valign="top" align="left">VEXAS (vacuoles, E1 enzyme, X linked, autoinflammatory, somatic) syndrome</td>
<td valign="top" align="left">
<italic>UBA1</italic>
</td>
<td valign="top" align="left">Somatic X-linked , myeloid restricted</td>
<td valign="top" align="left">LoF, mutations affect translation initiation site and promote production of a hypomorphic UBA1c isoform leading to defective polyubiquitination</td>
<td valign="top" align="left">Fever, neutrophilic dermatosis and vasculitis, ear and nose chondritis, venous thrombosis, bone marrow myelodysplasia and vacuolization</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B11">11</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">CAPS (cryopyrin associated periodic syndrome)</td>
<td valign="top" align="left">
<italic>NLRP3</italic>
</td>
<td valign="top" align="left">Germline dominant/somatic</td>
<td valign="top" align="left">GoF, mutations activate NLRP3 inflammasome assembly leading to excessive IL-1&#x3b2; production</td>
<td valign="top" align="left">Intermittent fever, neutrophilic urticaria, conjunctivitis, and arthralgia</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B146">146</xref>, <xref ref-type="bibr" rid="B147">147</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">NLRP12 autoinflammatory disease</td>
<td valign="top" align="left">
<italic>NLRP12</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">Complex, LoF or GoF effect, reduced NF-&#x3ba;B inhibition potential or increased inflammasome activation</td>
<td valign="top" align="left">Intermittent fever, neutrophilic urticaria, conjunctivitis, and arthralgia</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B148">148</xref>, <xref ref-type="bibr" rid="B149">149</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">TRAPS (TNF receptor associated periodic syndrome</td>
<td valign="top" align="left">
<italic>TNFRSF1A</italic>
</td>
<td valign="top" align="left">Germline dominant (mostly low penetrance)/somatic</td>
<td valign="top" align="left">LoF, disturbs soluble receptor shedding, production of mutant TNF-R1 with intracellular sequestration and ER stress, upregulation of unfolded protein response, impaired autophagy</td>
<td valign="top" align="left">Intermittent fever, abdominal pain, myalgia, arthralgia, erythematous skin rash, periorbital edema, amyloidosis</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B150">150</xref>&#x2013;<xref ref-type="bibr" rid="B152">152</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">DITRA (deficiency of IL36 receptor antagonist)</td>
<td valign="top" align="left">
<italic>IL36N</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, loss of IL36 antagonist results in uncontrolled IL-36 induced inflammatory response in keratinocytes</td>
<td valign="top" align="left">Generalized pustular psoriasis</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B153">153</xref>&#x2013;<xref ref-type="bibr" rid="B156">156</xref>)</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left">FMF (Familial Mediterranean Fever)</td>
<td valign="top" rowspan="2" align="left">
<italic>MEFV</italic>
</td>
<td valign="top" rowspan="2" align="left">Germline dominant or recessive and somatic</td>
<td valign="top" align="left">LoF, pyrin has an anti-inflammatory role by inhibiting IL-1&#x3b2; production</td>
<td valign="top" rowspan="2" align="left">Intermittent fever, peritonitis, skin rash, serositis, myalgia, arthritis and arthralgia</td>
<td valign="top" rowspan="2" align="center"> (<xref ref-type="bibr" rid="B157">157</xref>, <xref ref-type="bibr" rid="B158">158</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">GoF, mutated pyrin forms a complex with apoptosis associated speck like protein to form its own inflammasome, inducing IL-1&#x3b2; production</td>
</tr>
<tr>
<td valign="top" align="left">Blau syndrome</td>
<td valign="top" align="left">
<italic>NOD2</italic>
</td>
<td valign="top" align="left">Somatic</td>
<td valign="top" align="left">GoF, NOD2 becomes constitutively active promoting the activation of NF-&#x3ba;B and proinflammatory cytokine production</td>
<td valign="top" align="left">Non caseating granuloma formation, dermatitis, uveitis</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B159">159</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">DADA2 (deficiency of deaminase 2)</td>
<td valign="top" align="left">
<italic>CECR1</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, decreased ADA2 enzyme activity</td>
<td valign="top" align="left">Ischemic stroke, PAN vasculitis, livedoid rash, cytopenia, infectious susceptibility, lymphoproliferation</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B160">160</xref>, <xref ref-type="bibr" rid="B161">161</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">SAVI (Sting Associated Vascolupathy of Infancy)</td>
<td valign="top" align="left">
<italic>STING1</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">GoF, spontaneous activation of STING (dimerization or spontaneous trafficking from ER to Golgi) resulting in excessive type I IFN response</td>
<td valign="top" align="left">Digital ischemia, chilblain, interstitial lung disease and fibrosis, fever, failure to thrive</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B162">162</xref>, <xref ref-type="bibr" rid="B163">163</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">A20 haploinsufficiency</td>
<td valign="top" align="left">
<italic>TNFAIP3</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, reduced expression of A20 resulting in impaired deubiquitination (K63 chains) with excessive activation of NF- &#x3ba;B</td>
<td valign="top" align="left">Beh&#xe7;et like disease, systemic inflammation, intestinal symptoms</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B10">10</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Additional clinical and immunological features can be found in (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_5_1_2">
<title>STING1</title>
<p>SAVI is an acronym that stands for STING Associated Vasculopathy of Infancy, described in 2014 (<xref ref-type="bibr" rid="B162">162</xref>). It is an AD inherited disease caused by GOF mutations in <italic>STING1</italic>, causing an uncontrolled activation of the cyclic GMP-AMP synthase (cGAS)-STING cytosolic DNA sensing pathway resulting in excessive type I interferon production (<xref ref-type="bibr" rid="B162">162</xref>). Recessive inheritance of GOF mutations has recently been described (<xref ref-type="bibr" rid="B167">167</xref>). Clinical manifestations mainly consist of pulmonary (interstitial lung disease, fibrosis), systemic (fever, failure to thrive) or skin manifestations (chilblains, digital ischemia) (<xref ref-type="bibr" rid="B163">163</xref>). Although the acronym suggests an infancy onset, adult-onset vasculitis with renal manifestations has been reported in a patient (<xref ref-type="bibr" rid="B163">163</xref>). Genetic modifiers such as SNPs in <italic>STING1</italic> itself or other interferon related genes such as <italic>IFIH1</italic> could impact disease severity (<xref ref-type="bibr" rid="B163">163</xref>) and viral exposure in a <italic>STING1</italic> GOF mouse model determined the development of pulmonary fibrosis (<xref ref-type="bibr" rid="B23">23</xref>).</p>
</sec>
</sec>
<sec id="s3_5_2">
<title>3.5.2 Defects Affecting the Inflammasome</title>
<sec id="s3_5_2_1">
<title>MEFV</title>
<p>Familial periodic fever syndrome is the most common monogenic autoinflammatory disorder. It is generally caused by homozygous or CH mutations in <italic>MEFV</italic> encoding the protein pyrin, although patients with heterozygous mutations are reported where no second hit was found (<xref ref-type="bibr" rid="B157">157</xref>). Pyrin interacts with inflammasome components and caspase 1 to induce the production of IL-1&#x3b2;. Whether mutations in <italic>MEFV</italic> act as GOF or LOF remains a matter of debate and evidence exists to support both hypotheses (<xref ref-type="bibr" rid="B168">168</xref>). Up till now 61 (likely) pathogenic mutations have been reported in the Infevers database linked to a phenotype of FMF and most of them validated <italic>in vitro</italic>. Adult-onset phenotype is commonly seen and differs from childhood onset FMF with regards to genetic and clinical aspects. Adult-onset FMF (onset &#x2265;20 years is associated with a lower prevalence of highly penetrant mutations (e.g. homozygous M694V) and clinical symptoms such as fever, peritonitis, pleuritis, arthritis and erythema are less observed compared to early-onset FMF (<xref ref-type="bibr" rid="B169">169</xref>). A somatic, heterozygous myeloid restricted mutation (p.R652H) was claimed to be responsible for late onset FMF in a middle aged Ashkenazi Jewish woman with a prior diagnosis of JAK2 positive polycythemia vera (PV). At the time of PV diagnosis, the <italic>MEFV</italic> mutation was observed at a very low level by Sanger sequencing on PBMCs, but reanalysis 4 years later when inflammatory symptoms commenced, showed that the <italic>MEFV</italic> mutation reached a MAF of 46% in PBMCs. This mutation was only observed in co-segregation with the JAK2 mutant suggesting a JAK2 driven clonal expansion of <italic>MEFV</italic> mutant containing cells (<xref ref-type="bibr" rid="B158">158</xref>).</p>
</sec>
<sec id="s3_5_2_2">
<title>NLRP3</title>
<p>Cryopyrin associated periodic syndrome (CAPS) is a group of diseases related to a defect in the protein cryopyrin (NLRP3). NLRP3 is a key component of the inflammasome functioning as a pattern recognition receptor (PRR) binding pathogen associated molecular patters (PAMP) such as products released from damaged cells (uric acid, extracellular ATP). Upon binding to PAMPs, recruitment of the NLRP3 inflammasome and adapter protein apoptosis associated speck-like protein (ASC) is initiated activating caspase-1 which mediates the production of proinflammatory cytokines such as IL-1&#x3b2; (<xref ref-type="bibr" rid="B170">170</xref>). ASC has also been shown to have prionoid activities that propagate inflammation (<xref ref-type="bibr" rid="B170">170</xref>). GOF mutations in <italic>NLRP3</italic> result in abnormal activation of the inflammasome causing excessive, uncontrolled inflammatory responses. Clinically three phenotypes have been described; familial cold autoinflammatory syndrome (FCAS), Muckle Wells syndrome (MWS) and neonatal onset multisystem inflammatory disease (NOMID). Although initially described in neonates and infants, adult-onset patients have been reported. In one series the median age of onset was 13 (range 4-40) (<xref ref-type="bibr" rid="B171">171</xref>) with the oldest case reported having a disease onset at the age of 46 (<xref ref-type="bibr" rid="B172">172</xref>). In addition, somatic NLRP3 mosaicism has been identified in adult-onset cases (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B146">146</xref>). Some of these patients were given the diagnosis of Schnitzler disease prior to genetic diagnosis (<xref ref-type="bibr" rid="B147">147</xref>). Clinical presentation includes intermittent febrile episodes, fatigue, headache, neutrophilic urticaria, conjunctivitis, and arthralgia (<xref ref-type="bibr" rid="B173">173</xref>).</p>
</sec>
<sec id="s3_5_2_3">
<title>NLRP12</title>
<p>
<italic>NLRP12</italic> encodes the protein monarch-1 which mainly functions as a suppressor of the (non)-canonical NF-&#x3ba;B pathway. However, NLRP12 can also be involved in inflammasome signaling and drive caspase-1 activation resulting in proinflammatory cytokine release (<xref ref-type="bibr" rid="B174">174</xref>). Several sporadic cases or families with heterozygous <italic>NLRP12</italic> mutations, presenting with an autoinflammatory disease highly resembling CAPS, have been described (<xref ref-type="bibr" rid="B148">148</xref>, <xref ref-type="bibr" rid="B149">149</xref>). The pathogenesis is complex and seems to depend on the type of the mutation. For example a described nonsense mutation p.R284* was shown to be less effective in suppressing NF-&#x3ba;B activity consistent with a LOF effect. Other missense mutations such as p.R294Q or p.R352C rather directly increase speck formation and caspase-1 signaling suggesting a GOF effect (<xref ref-type="bibr" rid="B174">174</xref>). A recent case series, describes adult-onset (range 18-54 years) in 27% (8/29) of studied patients, all harboring a pathogenic missense mutation (p.F402L or p.G448A) (<xref ref-type="bibr" rid="B148">148</xref>, <xref ref-type="bibr" rid="B149">149</xref>).</p>
</sec>
</sec>
<sec id="s3_5_3">
<title>3.5.3 Non Inflammasome Related Conditions</title>
<sec id="s3_5_3_1">
<title>CARD14</title>
<p>CARD14 functions as a scaffold protein, highly expressed in keratinocytes, that regulates NF-&#x3ba;B signaling. Pathogenic missense variants in <italic>CARD14</italic> with a GOF effect resulting in amplified NF-&#x3ba;B responses in keratinocytes can cause a spectrum of skin conditions such as pustular psoriasis, psoriasis vulgaris and familial pytiriasis rubra vulgaris without the presence of systemic symptoms. Incomplete penetrance and considerable disease severity variability and onset (neonatal-83 years) are seen within and between families (<xref ref-type="bibr" rid="B175">175</xref>, <xref ref-type="bibr" rid="B176">176</xref>). The degree of NF- &#x3ba;B signaling activity induced by a mutant is probably a determinant for disease onset, as the most severe phenotype of early-onset generalized pustular psoriasis was seen in a patient with a <italic>de novo</italic> p.E138A variant which was demonstrated to have the highest NF-&#x3ba;B activity in <italic>in vitro</italic> overexpression experiments compared to other pathogenic <italic>CARD14</italic> mutations (<xref ref-type="bibr" rid="B176">176</xref>).</p>
</sec>
<sec id="s3_5_3_2">
<title>IL36RN</title>
<p>IL36 receptor antagonist deficiency is a genetic disorder associated with generalized pustular psoriasis. It was first reported in nine Tunisian families sharing a homozygous missense mutation in <italic>IL36RN</italic> (p.L27P), leading to a decreased expression and thereby unable to inhibit proinflammatory cytokine production by patient keratinocytes upon stimulation by IL-36. A total of 16 affected individuals of whom 4 developed disease in adulthood were reported (<xref ref-type="bibr" rid="B153">153</xref>). Later, other reports on adult- onset pustular psoriasis have been made in association with homozygous complete LOF variants in <italic>IL36RN</italic> (<xref ref-type="bibr" rid="B154">154</xref>&#x2013;<xref ref-type="bibr" rid="B156">156</xref>). The variation in age of onset was therefore attributed to other modifying genes and/or environmental factors, since no partial gene function <italic>in vitro</italic> was retained.</p>
</sec>
<sec id="s3_5_3_3">
<title>NOD2</title>
<p>Blau syndrome is a rare AD autoinflammatory syndrome, characterized by non-caseating granulomatous arthritis, dermatitis and uveitis. It is caused by GOF mutations in NOD2, an intracellular PRR, resulting in a spontaneous activation of NOD2 with downstream activation of NF-&#x3ba;B responsive genes. The classic Blau syndrome was reported once in an adult patient (22 years at onset) (<xref ref-type="bibr" rid="B159">159</xref>). He carried gonosomal NOD2 mosaicism (p.R334G) and his both children had early-onset symptoms (11.8 and 30 months). Amplicon based deep sequencing of the NOD2 gene showed a MAF on PBMC of 12.9% in the father and 49-51.5% in the children suggesting a gene dosage or cellular compartment effect. One other patient with somatic mosaicism has been published with a later onset and milder phenotype although this was still with a presentation in infancy (<xref ref-type="bibr" rid="B177">177</xref>).</p>
</sec>
<sec id="s3_5_3_4">
<title>TNFAIP3</title>
<p>A20 haploinsufficiency is caused by germline heterozygous LOF mutations in <italic>TNFAIP3</italic>, encoding the deubiquitination enzyme A20. A20 is a critical regulatory unit of the canonical NF-&#x3ba;B pathway, by functioning as an inhibitor of key proinflammatory molecules. The causal link between heterozygous LOF variants in A20 an autoinflammatory disorder with Beh&#xe7;et-like manifestations (aphtous stomatitis, genital ulcers and intestinal symptoms) was described in 2016 (<xref ref-type="bibr" rid="B178">178</xref>). Adult-onset cases (oldest age of onset 20 years) have been sporadically reported in families with variable penetrance (<xref ref-type="bibr" rid="B10">10</xref>).</p>
</sec>
<sec id="s3_5_3_5">
<title>TNFRSF1A</title>
<p>TNF receptor associated periodic syndrome (TRAPS) is the second most frequent inherited AD autoinflammatory disease. TNF-R1 expressed on immune cells is activated by TNF-&#x3b1;, allowing the recruitment of several adaptor proteins leading to the formation of complex I which activates NF-&#x3ba;B and transcription of anti-apoptotic and proinflammatory genes. Up till now 103 mutations, most of them located in the extracellular part of the receptor, have been classified as (likely) pathogenic in patients with a compatible phenotype according to the Infevers database. Some of these mutations still remain to be validated by <italic>in vitro</italic> assays. TRAPS is more complex than other autoinflammatory condition regarding the pathogenesis, since there is not one predominant mechanism. Mutations can have different and multiple impacts on protein function, either by affecting the cleavage of the extracellular domain preventing the release of soluble receptors (&#x2018;shedding effect&#x2019;) attenuating inflammatory response or by expressing a mutant TNF-R1 alongside the WT resulting in a dysregulated inflammatory response (<xref ref-type="bibr" rid="B179">179</xref>). Adult-onset phenotypes are associated with low penetrance variants such as p.R92Q or p.P46L (<xref ref-type="bibr" rid="B150">150</xref>) but also somatic mosaicism has been described in two cases of adult-onset TRAPS (<xref ref-type="bibr" rid="B151">151</xref>, <xref ref-type="bibr" rid="B152">152</xref>). Clinical features may range from atypical images such as isolated recurrent pericarditis to more typical but adult-onset periodic fever syndromes with serositis, myalgia/arthralgia, erythematosus skin lesions, periorbital edema, and, in case of long-standing uncontrolled inflammation, amyloidosis (<xref ref-type="bibr" rid="B173">173</xref>).</p>
</sec>
<sec id="s3_5_3_6">
<title>UBA1</title>
<p>VEXAS (vacuoles, E1 enzyme, X linked, autoinflammatory, somatic) syndrome is a recently described autoinflammatory disorder that presents in adult males, typically age 45-80 years (<xref ref-type="bibr" rid="B11">11</xref>). The underlying genetic defect is caused by somatic mutations in <italic>UBA1</italic>, an E1 ubiquitin activating enzyme. In a normal situation, two UBA1 isoforms (UBA1a and UBA1b) are produced from two translation sites (M1 and M41). The reported mutations (p.M41V, p.M41L, p.M41T) disrupt the second translation site (M41) of UBA1, resulting in the production of a third isoform (UBA1c) from a third downstream translation site (M67) which is normally not expressed. UBA1c, compared to UBA1a and b, is catalytically impaired resulting in loss of ubiquitylation leading to proteotoxic stress and dysregulated autophagy. Remarkably these mutations are restricted to the myeloid lineage in the periphery. Lymphoid progenitors were shown to carry the mutation, but for an undefined reason, mutated lymphoid progenitors do not further mature and translocate into the peripheral blood. Clinical presentation manifests as fever, nose/ear chondritis, skin disease with vasculitis and neutrophilic infiltration, venous thrombosis and often hematologic abnormalities ranging from isolated macrocytosis to myelodysplastic syndrome on bone marrow biopsy. Vacuolization of myeloid cells was present in all patients.</p>
</sec>
</sec>
</sec>
<sec id="s3_6">
<title>3.6 Complement Deficiencies</title>
<p>The complement system is a highly conserved part of our innate immunity, organized in three enzymatic pathways: the classical (CP), alternative (AP) and lectin pathways. Briefly, activation of these pathways results in the cleavage of C3 by a C3 convertase, followed by formation of a C5 convertase which cleaves C5 and initiates the activation of the common terminal pathway where a membrane attack complex (MAC) is formed by complement proteins C5b-9 (<xref ref-type="bibr" rid="B185">185</xref>). This MAC is responsible for the lysis of target cells (eg. bacterial, human cancer cells) promoting host defense. Deficiencies in complement are associated with auto-immune diseases such as systemic lupus erythematosus (SLE), frequently seen in defects of the early components of the classical pathway (<italic>C1Q, C1R/S, C2, C4)</italic> or with susceptibility to meningococcal disease and/or atypical hemolytic uremic syndrome (aHUS) by defects in the terminal pathway components (<italic>C5, C6, C7, C8A/B/G, C9)</italic> or complement regulators (<italic>CFP, CFH, CFD, CFI, CD46</italic>). Complement deficiencies in general are rare (~5% of IEIs), and seldomly have a first presentation in adulthood (<xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold></xref>) (<xref ref-type="bibr" rid="B186">186</xref>). If it occurs, adults mostly present with meningococcal disease or aHUS and genetic defects are found in the terminal component pathway or its regulators (<xref ref-type="bibr" rid="B186">186</xref>). For the scope of this review, focusing on immunodeficiency, we focused on genetic defects in adults with infectious susceptibility rather than isolated aHUS (with in rare cases infectious susceptibility) since the latter proportion of patients will likely be seen by a nephrologist. For an overview on C1-esterase inhibitor, encoded by <italic>SERPING1</italic>, the reader is referred to Busse et&#xa0;al. (<xref ref-type="bibr" rid="B183">183</xref>).</p>
<table-wrap id="T7" position="float">
<label>Table&#xa0;7</label>
<caption>
<p>Genes associated with adult-onset complement deficiencies.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">Disease</th>
<th valign="top" align="center">Genetic defect</th>
<th valign="top" align="center">Inheritance</th>
<th valign="top" align="center">Functional defect</th>
<th valign="top" align="center">Phenotype (key features)</th>
<th valign="top" align="center">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="8" align="left">
<bold>COMPLEMENT DEFICIENCIES</bold>
</td>
<td valign="top" align="left">C5</td>
<td valign="top" align="left">
<italic>C5</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, absent C5 levels</td>
<td valign="top" align="left">Meningococcal disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B180">180</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">C6</td>
<td valign="top" align="left">
<italic>C6</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, absent C6 levels</td>
<td valign="top" align="left">Meningococcal disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B180">180</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">C7</td>
<td valign="top" align="left">
<italic>C7</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF , absent C7 levels</td>
<td valign="top" align="left">Meningococcal disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B180">180</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">C8</td>
<td valign="top" align="left">
<italic>C8</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, absent C8 levels</td>
<td valign="top" align="left">Meningococcal disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B180">180</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">C9</td>
<td valign="top" align="left">
<italic>C9</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, absent C9 levels</td>
<td valign="top" align="left">Meningococcal disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B181">181</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">Factor D deficiency</td>
<td valign="top" align="left">
<italic>CFD</italic>
</td>
<td valign="top" align="left">Germline recessive</td>
<td valign="top" align="left">LoF, absent Factor D</td>
<td valign="top" align="left">Meningococcal disease</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B182">182</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">C1q</td>
<td valign="top" align="left">
<italic>SERPING1</italic>
</td>
<td valign="top" align="left">Germline dominant</td>
<td valign="top" align="left">LoF, dominant negative, low levels of C1q (HAE type I) or reduced function (HAE type II)</td>
<td valign="top" align="left">Hereditary angioedema</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B183">183</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">MASP2 deficiency</td>
<td valign="top" align="left">
<italic>MASP2</italic>
</td>
<td valign="top" align="left">Germline dominant/recessive</td>
<td valign="top" align="left">LoF, decreased expression/secretion and abolished lectin pathway activation</td>
<td valign="top" align="left">Herpes simplex encephalitis in adults</td>
<td valign="top" align="center"> (<xref ref-type="bibr" rid="B184">184</xref>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Additional clinical and immunological features can be found in (<xref ref-type="bibr" rid="B35">35</xref>).</p>
</table-wrap-foot>
</table-wrap>
<sec id="s3_6_1">
<title>C5, 6, 7, 8, 9</title>
<p>Phenotypically, deficiencies in the components of the MAC complex, are very resembling, presenting with invasive meningococcal disease (<xref ref-type="bibr" rid="B186">186</xref>). A nationwide French study enrolled 41 adults (defined as &gt; 15 years) with diverse complement deficiencies and an infectious episode (<xref ref-type="bibr" rid="B180">180</xref>). Mean age at diagnosis was 28 years (range 15-67 years), with the highest proportion in group 15-25 years (25%). Importantly, half of the cohort already reported a serious infectious event before diagnosis (unspecified time of delay), so an adult-onset criterium is not always met. Genetic analysis demonstrated that 83% of patients had a terminal pathway deficiency (mostly in C7 and C6, followed by C5 and 8) and in 80% of the cases meningitis was the main clinical symptom. C9 deficiency was not found in this French cohort, because this is almost exclusively seen in patients from Japanese descent (<xref ref-type="bibr" rid="B181">181</xref>).</p>
</sec>
<sec id="s3_6_2">
<title>CFD</title>
<p>Factor D, encoded by <italic>CFD</italic>, is a peptidase and a component of the AP. It binds and cleaves factor B to Ba and Bb to promote downstream activation. Deficiency in Factor D, caused by a homozygous p.S42* mutation, was diagnosed in a 23-year-old, previously healthy, woman who presented with meningococcal disease at first presentation (<xref ref-type="bibr" rid="B182">182</xref>).</p>
</sec>
<sec id="s3_6_3">
<title>MASP2</title>
<p>
<italic>MASP2</italic> encodes mannose binding lectin associated serine protease which forms a multimeric complex with mannose binding lectin and subsequently cleaves components C4 and C2 leading to downstream activation of the complement cascade (<xref ref-type="bibr" rid="B187">187</xref>). MASP2 deficiency was first described in 2013 in a patient who presented at the age of 13 years with ulcerative colitis and later in life developed infectious susceptibility (pneumococcal infections), skin involvement (erythema multiforme), progressive lung fibrosis and positive auto-immune antibodies (<xref ref-type="bibr" rid="B188">188</xref>). Functional assays showed a non-functional lectin pathway in this patient, caused by a homozygous missense mutation (p.D120G) in <italic>MASP2</italic>, leading to an abolished expression. Recently, a case of two patients with adult-onset HSE (24 and 60 years) was reported (<xref ref-type="bibr" rid="B184">184</xref>). Both of them had a single heterozygous deleterious mutations (p.G634R and p.R203W). Both mutations led to an abnormal protein secretion, a lost ability of auto-activation (p.G634R) or reduced antiviral activity (p.G634R). Furthermore, the authors showed that rare <italic>MASP2</italic> variants are enriched among HSE patients compared to healthy controls and that mice deficient in mannose binding lectin (MBL) were more prone to HSE (with lower survival rates and higher viral loads) upon intranasal inoculation (<xref ref-type="bibr" rid="B184">184</xref>). Whether MASP2 deficiency is a monogenic cause of IEI or merely a contributing factor is still a matter of debate (<xref ref-type="bibr" rid="B189">189</xref>). Healthy individuals who are MASP2 deficient (and have homozygous p.D120G mutations) have been reported. It might be possible that interplay with environmental triggers is important before a phenotype can manifest, or that there is a large redundancy for MASP2 in human defenses (<xref ref-type="bibr" rid="B189">189</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s4">
<title>4 Conclusion</title>
<p>Advances in next generation sequencing has significantly expanded the identification of novel genes involved in IEI over the years, not only in early-onset severe IEI such as SCID but also in milder forms such as antibody deficiencies, innate immune defects, immune dysregulation diseases, autoinflammatory diseases and complement deficiencies that can manifest in adulthood. The spectrum of age of onset during adulthood is highly variable for all forms of IEI, except for the diseases affecting humoral and cellular immunity which usually manifest in the first decades (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The elucidation of molecular drivers of IEI has important consequences towards the management of these patients since it can rationalize targeted treatment (eg. JAK-inhibition in interferonopathies, TNF-&#x3b1; inhibitors in DADA2, CTLA4 agonists in CTLA4 haploinsufficiency, sirolimus in ALPS, leniolisib in APDS), bone marrow transplant in some cases, provide prognostic information and inform genetic counselling. Therefore, physicians encountering adult patients with recurrent (common or rare specific) infections, autoinflammatory disorders or lymphoproliferation should be aware of the occurrence of IEI in this population and, if confirmed, consider the possibility of a monogenic driven disease. These patients should be referred to a specialized tertiary center for further diagnostics using targeted gene panels or whole exome/genome sequencing. Mechanisms for late onset disease are not always well understood, but hypomorphic mutations allowing partial protein function, somatic mosaicism, environmental exposure and epigenetics are likely the main contributors.</p>
</sec>
<sec id="s5" sec-type="author-contributions">
<title>Author Contributions</title>
<p>RS initiated and supervised the study. FS took the lead in drafting the manuscript. FS and TC reviewed the literature. All authors provided critical feedback and helped shaping the manuscript.</p>
</sec>
<sec id="s6" sec-type="funding-information">
<title>Funding</title>
<p>FS (11B5520N) is fellow of the Fonds Wetenschappelijk Onderzoek - Vlaanderen National Fund for Scientific Research (FWO). RS is FWO senior clinical investigator fellows (1805518N, respectively) and received funding from KU Leuven C1 (C12/16/024). RS and SV are members of the European Reference Network for Rare Immunodeficiency, Autoinflammatory and Autoimmune Diseases (Project ID No 739543). This work was supported by the VIB Grand Challenges Program.</p>
</sec>
<sec id="s7" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s8" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
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