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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2021.813887</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Paradox of an Unpolluted Coastal Site Facing a Chronically Contaminated Industrial Area</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Corinaldesi</surname> <given-names>Cinzia</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/166722/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bianchelli</surname> <given-names>Silvia</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/373348/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Rastelli</surname> <given-names>Eugenio</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/757570/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Varrella</surname> <given-names>Stefano</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1544904/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Canensi</surname> <given-names>Sara</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1031526/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Gambi</surname> <given-names>Cristina</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/495360/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Lo Martire</surname> <given-names>Marco</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/819976/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Musco</surname> <given-names>Luigi</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1555209/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bertocci</surname> <given-names>Iacopo</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1555231/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Fanelli</surname> <given-names>Emanuela</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/619945/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Lucia</surname> <given-names>Giulia</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1614133/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Simoncini</surname> <given-names>Nicola</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1583083/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Dell&#x2019;Anno</surname> <given-names>Antonio</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/182201/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Dipartimento di Scienze e Ingegneria della Materia, dell&#x2019;Ambiente ed Urbanistica, Polytechnic University of Marche</institution>, <addr-line>Ancona</addr-line>, <country>Italy</country></aff>
<aff id="aff2"><sup>2</sup><institution>Dipartimento di Scienze della Vita e dell&#x2019;Ambiente, Polytechnic University of Marche</institution>, <addr-line>Ancona</addr-line>, <country>Italy</country></aff>
<aff id="aff3"><sup>3</sup><institution>Dipartimento di Biotecnologie Marine, Stazione Zoologica Anton Dohrn, Fano Marine Centre</institution>, <addr-line>Fano</addr-line>, <country>Italy</country></aff>
<aff id="aff4"><sup>4</sup><institution>Stazione Zoologica Anton Dohrn</institution>, <addr-line>Naples</addr-line>, <country>Italy</country></aff>
<aff id="aff5"><sup>5</sup><institution>Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, University of Salento</institution>, <addr-line>Lecce</addr-line>, <country>Italy</country></aff>
<aff id="aff6"><sup>6</sup><institution>Dipartimento di Biologia, University of Pisa, CoNISMa</institution>, <addr-line>Pisa</addr-line>, <country>Italy</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Paolo Magni, National Research Council (CNR), Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Federica Semprucci, University of Urbino Carlo Bo, Italy; Pablo Muniz, Universidad de la Rep&#x00FA;blica, Uruguay; Maria Flavia Gravina, University of Rome &#x201C;Tor Vergata&#x201D;, Italy</p></fn>
<corresp id="c001">&#x002A;Correspondence: Cinzia Corinaldesi, <email>c.corinaldesi@staff.univpm.it</email></corresp>
<fn fn-type="equal" id="fn002"><p><sup>&#x2020;</sup>These authors have contributed equally to this work</p></fn>
<fn fn-type="other" id="fn004"><p>This article was submitted to Marine Ecosystem Ecology, a section of the journal Frontiers in Marine Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>01</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>8</volume>
<elocation-id>813887</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>11</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>28</day>
<month>12</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2022 Corinaldesi, Bianchelli, Rastelli, Varrella, Canensi, Gambi, Lo Martire, Musco, Bertocci, Fanelli, Lucia, Simoncini and Dell&#x2019;Anno.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Corinaldesi, Bianchelli, Rastelli, Varrella, Canensi, Gambi, Lo Martire, Musco, Bertocci, Fanelli, Lucia, Simoncini and Dell&#x2019;Anno</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Present and past industrial activities in coastal areas have left us a legacy of contamination and habitat degradation with potential implications for human health. Here, we investigated a coastal marine area enclosed in a Site of National Interest (SNI) of the central-western Adriatic (Mediterranean Sea), where priority actions of environmental remediation are required by governmental laws due the high environmental and human risk, and that is off-limits to any human activity since 2002. In particular, our investigation was focused on an area located in front of a chemical industry dismissed more than 3 decades ago. We report that the concentrations of heavy-metal and organic contaminants in the investigated sediments were generally lower than those expected to induce detrimental biological effects. Meiofaunal abundance, biomass and community structure changed among stations, but regardless of the distance from the abandoned industrial plant. Taxa richness within the SNI did not change significantly compared to the controls and the lack of some taxa in the SNI transects was not due to the contamination of the SNI area. The results of this study suggest a natural recovery of the marine area over 2 decades of restrictions on human activities, including fishing and shipping bans. If the hypothesis of the natural recovery of this SNI will be further confirmed by other studies, the plans for the identification and monitoring of the most polluted areas in Italy should necessarily be redefined also in the light of the Water Framework, the Marine Strategy Framework and the Environmental Quality Standard Directives.</p>
</abstract>
<kwd-group>
<kwd>marine pollution</kwd>
<kwd>trophic state</kwd>
<kwd>heavy metals</kwd>
<kwd>organic contaminants</kwd>
<kwd>meiofauna</kwd>
<kwd>highly contaminated marine areas</kwd>
</kwd-group>
<contract-sponsor id="cn001">Fondazione Cassa di Risparmio di Verona Vicenza Belluno e Ancona<named-content content-type="fundref-id">10.13039/501100006747</named-content></contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="74"/>
<page-count count="14"/>
<word-count count="9938"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>Coastal zones represent key areas of interaction between ocean and land, and provide a wide range of ecosystem goods and services, such as carbon and nutrient cycling, climate regulation, food provision and recreational activities (<xref ref-type="bibr" rid="B24">Costanza et al., 1997</xref>; <xref ref-type="bibr" rid="B12">Barbier, 2012</xref>, <xref ref-type="bibr" rid="B13">2017</xref>; <xref ref-type="bibr" rid="B71">Turner and Schaafsma, 2015</xref>). However, the rapid urbanization and industrialization of coastal zones and the consequent marine pollution, habitat degradation, alien species invasion and alteration of food webs are determining the loss of these goods and services (<xref ref-type="bibr" rid="B70">Todd et al., 2019</xref>).</p>
<p>The Mediterranean coasts host more than 200 petrochemical plants, energy installations and chemical plants (<xref ref-type="bibr" rid="B21">Civili, 2010</xref>) and only less than 1% of the total area remains relatively unaffected by human activities (<xref ref-type="bibr" rid="B50">Micheli et al., 2013</xref>). In most cases, despite the closure of industrial plants for many years, the ceased release of pollutants into the sea and/or the implementation of environmental regulations, the contamination still persists (<xref ref-type="bibr" rid="B62">Romano et al., 2004</xref>; <xref ref-type="bibr" rid="B25">Croudace et al., 2015</xref>; <xref ref-type="bibr" rid="B36">Gambi et al., 2020a</xref>).</p>
<p>Marine sediments represent the final sink for all contaminants, which can have impacts on marine life at all levels, from prokaryotes to metazoans (<xref ref-type="bibr" rid="B39">Hay Mele et al., 2020</xref>; <xref ref-type="bibr" rid="B68">Tangherlini et al., 2020</xref>), and especially on those benthic organisms, such as meiofauna, which are directly exposed to contaminants in their habitat (<xref ref-type="bibr" rid="B36">Gambi et al., 2020a</xref>). Such effects can be exacerbated by multiple stressors, including climate change (<xref ref-type="bibr" rid="B50">Micheli et al., 2013</xref>; <xref ref-type="bibr" rid="B16">Bertocci et al., 2019</xref>; <xref ref-type="bibr" rid="B23">Corinaldesi et al., 2022</xref>).</p>
<p>Meiofauna are the most abundant metazoans in benthic ecosystems of the world oceans (<xref ref-type="bibr" rid="B34">Fenchel and Finlay, 2004</xref>), including coastal environments, and some taxa (e.g., Nematoda) are known to be tolerant to chemical contamination (<xref ref-type="bibr" rid="B67">Snelgrove et al., 1997</xref>; <xref ref-type="bibr" rid="B52">Moens et al., 2013</xref>; <xref ref-type="bibr" rid="B36">Gambi et al., 2020a</xref>). However, investigations on the effects of chemical contamination on meiofaunal assemblages in coastal areas have reported that high levels of mixed contamination (e.g., heavy metals and hydrocarbons) may lead to a decrease in biodiversity (<xref ref-type="bibr" rid="B28">Danovaro et al., 1995</xref>; <xref ref-type="bibr" rid="B38">Gyedu-Ababio and Baird, 2006</xref>; <xref ref-type="bibr" rid="B36">Gambi et al., 2020a</xref>) although without a substantial loss of total abundance and biomass of organisms. Other investigations documented a decrease in abundance and biomass (<xref ref-type="bibr" rid="B28">Danovaro et al., 1995</xref>; <xref ref-type="bibr" rid="B43">Kang et al., 2014</xref>) and the dramatic deterioration of ecosystem functioning (<xref ref-type="bibr" rid="B39">Hay Mele et al., 2020</xref>).</p>
<p>Meiofauna are considered bioindicator organisms, which provide advantages over the use of macrofauna due to their higher abundance and species diversity, small size, rapid turnover, lack of larval dispersal and presence of both tolerant and sensitive species (<xref ref-type="bibr" rid="B29">Danovaro et al., 2009</xref>). Some studies have shown faster response of meiofauna compared to macrofauna (<xref ref-type="bibr" rid="B10">Balsamo et al., 2010</xref>) and a change in community structure at high concentrations of organic matter and contaminants resulting in a community shift toward more tolerant taxa (<xref ref-type="bibr" rid="B53">Moreno et al., 2008</xref>; <xref ref-type="bibr" rid="B42">Kandratavicius et al., 2018</xref>).</p>
<p>Coastal areas, especially when subjected to anthropogenic impacts, are often characterized by an altered trophic state, as a result of the organic nutrient enrichment (<xref ref-type="bibr" rid="B31">Dell&#x2019;Anno et al., 2002</xref>). Phytopigment concentrations and the biochemical composition of the organic matter (in terms of proteins, carbohydrates and lipids) in marine sediments can change in response to different anthropogenic sources. For this reason these can be used as a proxy of the benthic trophic state (<xref ref-type="bibr" rid="B31">Dell&#x2019;Anno et al., 2002</xref>). An altered trophic status may have consequences at different levels of ecosystem organization, including changes in the composition of meiofaunal assemblages (<xref ref-type="bibr" rid="B56">Pusceddu et al., 2011</xref>), thus providing information on the health of the ecosystem.</p>
<p>In the present study, we conducted the chemical characterization of the sediments and investigated their trophic state and the effects on meiofaunal assemblages in a coastal area of the central-western Adriatic (Mediterranean Sea) located in front of a chemical industry abandoned more than 3 decades ago. This area is currently included among the most heavily polluted sites in Italy (defined as &#x201C;Sites of National Interest,&#x201D; SNI), which are off-limits to any human activity (e.g., shipping, fishery and bathing), and where clean-up and remediation actions are required by Italian laws (<xref ref-type="bibr" rid="B7">Ausili et al., 2020</xref>). In particular, we compared the health conditions of the benthic ecosystems of the SNI area with those of the northern and southern sediments outside the SNI used as controls. Given the supposed criticality of the SNI in terms of pollution and risk for environmental health, we hypothesized a strong impact on marine benthic communities and trophic state of the investigated area.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Study Area</title>
<p>The investigated area, Falconara Marittima on the western coast of the central Adriatic Sea, has an extension of about 1,200 ha (<xref ref-type="fig" rid="F1">Figure 1</xref>), and is included among the most heavily polluted sites in Italy (SNI). There, remediation actions are required by Italian laws and therefore any type of human activity is prohibited, including shipping, fishing and bathing (<xref ref-type="bibr" rid="B7">Ausili et al., 2020</xref>). This SNI is an area at high risk of environmental crisis (AERCA; <xref ref-type="bibr" rid="B48">Martuzzi et al., 2002</xref>) and also includes a marine area, located to the north, in front of the former Montedison plant, and to the south in front of the mouth of the Esino river and an oil refinery (used since the 1940s as a refining and storage station for petroleum products).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Sampling site and study area. The stations of the control transects (C1, C2, and C3) are represented as gray dots, the SNI transects (M1, M2, and M3) as blue dots and the perimeter of the SNI area as a blue dotted line. The small blue rectangle represents the location of the former Montedison plant.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-813887-g001.tif"/>
</fig>
<p>In the study area the water circulation is cyclonic with permanent or seasonal gyres interconnected with coastal currents such as the Western Adriatic Current that flows southwards (<xref ref-type="bibr" rid="B74">Zavatarelli et al., 2000</xref>).</p>
<p>The study area (<xref ref-type="fig" rid="F1">Figure 1</xref>) lies in front of the former Montedison industrial plant, whose activity dates back to 1919 when the production of superphosphate started. In 1944, the plant was acquired by the Montecatini Company, and used as a warehouse by the British Royal Army Service Corps. From 1966 to 1990 (decommissioning year) the chemical pole has produced fertilizers using pyrite and phosphorous, which have been reported to contaminate soil and groundwater of the surrounding area, together with heavy metals, fluorides, hydrocarbons and PAHs (<xref ref-type="bibr" rid="B60">Regione Marche, 2009</xref>).</p>
</sec>
<sec id="S2.SS2">
<title>Sampling Strategy</title>
<p>Sediment samples from a total of 42 stations were collected between September and November 2018 along 6 transects from the coast to open water (from 0 to 3 km <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 1</xref>). Each transect included 7 stations along a bathymetric gradient (from 1 to 12 m depth, thus covering most of the bathymetric range of the circumscribed SNI area, <xref ref-type="fig" rid="F1">Figure 1</xref>) at increasing distance from the potential source of contamination of the former Montedison plant.</p>
<p>In particular, 3 transects were placed in front of the former Montedison plant (defined as M1, M2, and M3) and 3 transects, defined as controls, were placed outside the SNI area: two on the northern side (C1 and C2) upstream of the SIN and the Western Adriatic Current that flows southward, and one on the southern side of the SNI (C3, <xref ref-type="fig" rid="F1">Figure 1</xref>) downstream of the SNI. This sampling strategy was defined to balance the number of transects within the SNI and controls outside the SNI. In addition, we considered 7 sampling points along each transect to analyze the putative effect of contamination on meiofauna assemblages at a small spatial scale (order of magnitude of meters).</p>
<p>Sediment samples were collected at 1-m depth by SCUBA divers and at depths between 3 and 12 m, through a Van Veen grab (sampling surface: 0.08 m<sup>2</sup>) on board of the R/V <italic>Actea</italic>.</p>
<p>Surface sediment sub-samples (0&#x2013;10 cm) for the analysis of inorganic and organic contaminants (see details below in the dedicated paragraph), grain size, quantity and biochemical composition of organic matter (used as a proxy of trophic state), and meiofaunal assemblages were collected from three independent grab deployments by means of Plexiglas manual corers (length: 30 cm, inner diameter: 3.6 cm). Three replicates were collected for each variable. The analyses of inorganic and organic contaminants were conducted in the M1 and M3 transects at all depths (as reported above) and in M2 transect only close to the putative contamination source (at 1-m) and in C1 and C3 transects.</p>
<p>Additional selected sub-superficial sediment layers (10&#x2013;20 cm) were collected for the analysis of contaminants in the transects M2 and M3 (at 1-m depth, close to the putative contamination source) and C2. Once transported to the laboratory, all the sediment samples were stored at &#x2013;27&#x00B0;C until the analyses. In addition, a CTD probe (Seabird 911-plus) was used to measure seawater temperature and salinity at all sampling stations.</p>
</sec>
<sec id="S2.SS3">
<title>Sedimentary Grain Size and Concentrations of Contaminants</title>
<p>Sediment grain size was determined by the sieving technique (<xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>). Samples were treated with a 10% H<sub>2</sub>O<sub>2</sub> solution to remove organic matter, and the total and non-biogenic grain size distribution determined. Gravel, sand, and silt sizes are reported as % contribution.</p>
<p>Heavy metals and metalloids were extracted from the sediment samples according to the EPA 3051 procedure, then the concentrations of As, Cd, Cr, Hg, Ni, Pb, and Cu were determined by inductively coupled plasma mass spectrometry (ICP-MS) (EPA3051 6020), while the concentrations of Al and Fe were determined by inductively coupled plasma optical emission spectrometry (ICP-OES) (EPA3051 6010). Polycyclic aromatic hydrocarbons and polychlorinated biphenyls (PCB) were extracted from the sediment samples according to the EPA 3545 procedure and analyzed by gas chromatography-mass spectrometry (GC-MS; EPA 8270). The total PAH concentrations were obtained summing those of the 16 congeners quantified (including naphthalene, acenaphthene, fluorene, acenaphthylene, phenanthrene, anthracene, fluoranthene, pyrene, benzo[a]anthracene, chrysene, benzo[b]fluoranthene, benzo[k]fluoranthene, benzo[a]pyr-ene, indeno[1,2,3,-cd]pyrene, dibenzo[a,h]anthracene, benzo[g,h,i] perylene). Moreover, the concentrations of LMW (low molecular weight) and HMW (high molecular weight) PAHs were calculated as the sum of the PAH congeners, distinguished based on their molecular weight. Aliphatic hydrocarbons with <italic>C</italic> &#x003C; 12 were analyzed by gas chromatography equipped with a flame ionization detector (GC-FID) (EPA5021 8015), and aliphatic hydrocarbons with <italic>C</italic> &#x003E; 12 were determined by GC-FID according to the method proposed by the Italian Institute for Environmental Protection and Research (<xref ref-type="bibr" rid="B11">Balzamo et al., 2012</xref>). The total organic carbon (TOC) content was analyzed by catalytic oxidation of C at high temperature (950&#x00B0;C) after hydrochloric acid-based elimination of carbonates (UNI13137, 2002). All analyses of contaminants were entrusted to an independent certified laboratory (Ambiente s.p.a.), accredited by the Italian accreditation body Accredia (accredia.it/en/). For all analytes, standards recovery was 100 &#x00B1; 20%.</p>
<p>For the analysis of trace elements, ICP Multielement, PLR560 (Exaxol Italia Ltd.) was used as the standard. PAH mix ITPM-023 (Ultra Scientific Ltd.), PCB mix L002M010INEJ (Lab Service Analytica Ltd.), hydrocarbon standard RGO-320-1 (Ultra Scientific Ltd.) and Regular Unleaded Gasoline Solution, RGO-600-1/Unleaded Gasoline Solution, RGO-601-1 (Ultra Scientific Ltd.) were used as standard for PAH, PCB, <italic>C</italic> &#x003E; 12 and <italic>C</italic> &#x003C; 12 aliphatic hydrocarbon analyses, respectively. For the analysis of TOC the standard used was IQC-106-5, Ultra Scientific (Ltd.).</p>
<p>The mean-effects range medium-quotient (m-ERM-q quotient) was calculated for both heavy metals and PAHs based on the available ERM values for these contaminants (<xref ref-type="bibr" rid="B44">Kowalska et al., 2018</xref>). Stations were classified considering the four levels of m-ERM-q: low priority site (&#x003C;0.1), medium-low priority site (0.1&#x2013;0.5), high-medium priority site (0.5&#x2013;1.5), and high priority site (&#x003E; 1.5) with a 9, 21, 49, and 76% probability of being toxic, respectively (<xref ref-type="bibr" rid="B45">Long et al., 2000</xref>).</p>
</sec>
<sec id="S2.SS4">
<title>Biochemical Components of the Sedimentary Organic Matter</title>
<p>Chlorophyll-a, phaeopigment, protein, carbohydrate and lipid concentrations were analyzed according to <xref ref-type="bibr" rid="B27">Danovaro (2010)</xref>. Briefly, chlorophyll-<italic>a</italic> and phaeopigments were analyzed fluorometrically (<xref ref-type="bibr" rid="B47">Lorenzen and Jeffrey, 1980</xref>; <xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>) and total phytopigment concentrations were defined as their sum. Total phytopigments contents were used as a proxy of organic matter of algal origin including the living (chlorophyll-<italic>a</italic>) and detrital (phaeopigments) fractions (<xref ref-type="bibr" rid="B58">Pusceddu et al., 2009</xref>).</p>
<p>Protein, carbohydrate, and lipid concentrations were determined spectrophotometrically (<xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>). Concentrations of proteins, carbohydrates, and lipids were converted into carbon equivalents using 0.49, 0.40, and 0.75 mgC mg<sup>&#x2013;1</sup>, respectively, as conversion factors and their sum was defined as biopolymeric carbon (BPC, used as an index of trophic state, <xref ref-type="bibr" rid="B57">Pusceddu et al., 2000</xref>). The percentage contribution of phytopigment C concentrations to biopolymeric C contents was used to define the trophic state of the investigated sediments (<xref ref-type="bibr" rid="B58">Pusceddu et al., 2009</xref>).</p>
</sec>
<sec id="S2.SS5">
<title>Abundance, Biomass and Taxa Richness of Meiofaunal Assemblages</title>
<p>Sediment samples were sieved through 500 and 30-&#x03BC;m mesh to analyze meiofaunal assemblages after ultrasounds treatment. Decantation method was adopted for samples collected at 1 m water depth (due to grain size dominated by gravel and sand; <xref ref-type="bibr" rid="B41">Higgins and Thiel, 1988</xref>), whereas density gradient extraction method (using Ludox HS40, diluted to a final density of 1.31 g cm<sup>&#x2013;3</sup>) was adopted for all other sediment samples (<xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>).</p>
<p>After extraction, all samples were fixed in 4% formalin and stained with Rose Bengal (final concentration 0.5 g L<sup>&#x2212;1</sup>, <xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>). Meiofaunal samples were sorted, and organisms were counted and identified under a stereomicroscope (Zeiss, &#x00D7; 16&#x2013;40 magnification) or optical microscope (Zeiss, &#x00D7; 40&#x2013;100 magnification), when necessary (<xref ref-type="bibr" rid="B40">Heip et al., 1985</xref>; <xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>).</p>
<p>Meiofaunal biomass was evaluated using bio-volumetric measurements. Nematodes biomass was calculated using the formula V = L &#x00D7; W<sup>2</sup> &#x00D7; 0.063 &#x00D7; 10<sup>&#x2013;5</sup> (in which body length, L, and width, W, are expressed in &#x03BC;m; <xref ref-type="bibr" rid="B6">Andrassy, 1956</xref>), whereas the biomass of all other taxa was estimated using V = L &#x00D7; W<sup>2</sup> &#x00D7; C, where C is a dimensionless factor (specific for each meiofaunal taxon) used to convert L &#x00D7; W<sup>2</sup> to body volume, according to models relating body dimensions and volume (<xref ref-type="bibr" rid="B33">Feller and Warwick, 1988</xref>). Each body volume was multiplied by an average density of 1.13 g cm<sup>&#x2013;3</sup> to obtain the biomass (&#x03BC;g DW: &#x03BC;g WW = 0.25; DW- dry weight and WW- wet weight, after <xref ref-type="bibr" rid="B73">Wieser, 1960</xref>) and the carbon content was 40% of the dry weight (<xref ref-type="bibr" rid="B33">Feller and Warwick, 1988</xref>). Meiofaunal abundance was expressed as number of individuals in 10 cm<sup>2</sup> and biomass as &#x03BC;gC &#x00D7; 10 cm<sup>&#x2013;2</sup> (<xref ref-type="bibr" rid="B27">Danovaro, 2010</xref>).</p>
<p>Meiofaunal taxa richness was determined as number of higher taxa encountered. Nematodes/copepodes (nauplii and adults) ratio was used as biological index (<xref ref-type="bibr" rid="B59">Raffaelli and Mason, 1981</xref>) as well as nematodes/kinorhynchs ratio, which was specifically used to assess the potential effect of organic enrichment (when kinorhynchs are absent, the ratio is considered as number of nematodes) (<xref ref-type="bibr" rid="B51">Mirto et al., 2012</xref>; <xref ref-type="bibr" rid="B26">Dal Zotto et al., 2016</xref>).</p>
</sec>
<sec id="S2.SS6">
<title>Statistical Analyses</title>
<p>To analyze the differences in terms of all variables investigated between SNI and control transects and among water depths, uni- and multivariate distance-based permutational analyses of variance were applied (PERMANOVA; <xref ref-type="bibr" rid="B3">Anderson, 2001</xref>; <xref ref-type="bibr" rid="B49">McArdle and Anderson, 2001</xref>). All the statistical analyses were carried out using the same experimental design, considering 3 factors as sources of variance: Condition (fixed, 2 levels: SNI and Control); Transect (random and nested in Condition, 3 levels for each Condition: northern control C1, northern control C2, southern control C3, SNI M1, SNI M2, and SNI M3) and Depth (random, 7 levels: 1, 3, 4, 5, 6, 10, 12 m).</p>
<p>Statistical tests to identify differences in organic matter variables (chlorophyll-a, phaeopigment, total phytopigment, protein, carbohydrate, lipid, and BPC concentrations), meiofaunal abundance, biomass and richness of taxa were based on matrixes of Euclidean distance whereas tests for meiofaunal taxonomic composition were based on Bray Curtis similarity matrixes (<xref ref-type="bibr" rid="B3">Anderson, 2001</xref>; <xref ref-type="bibr" rid="B49">McArdle and Anderson, 2001</xref>). To identify patterns of variability among depths along each transect and among transects at the same depth, pair-wise test were carried out. To visualize differences in the biochemical composition of organic matter and in the trophic state of the investigated stations, bi-plots after Canonical Analysis of Principal Coordinates (CAP) (<xref ref-type="bibr" rid="B5">Anderson and Willis, 2003</xref>) were used. Spearman&#x2019;s correlation vectors were used to identify which variables better explained differences between conditions, transects and depths.</p>
<p>SIMPER analyses were used to determine the percentage dissimilarity in the meiofaunal taxonomic composition among conditions (C1, C2, C3, M1, M2, and M3), transects or depths (cut off value 90%) (<xref ref-type="bibr" rid="B37">Gray, 2000</xref>).</p>
<p>Multivariate multiple regression analyses were performed to determine whether meiofaunal taxonomic composition (used as the response variable) was potentially influenced by environmental characteristics (grain size, depth, temperature, and salinity), presence of different contaminants (PAHs, <italic>C</italic> &#x003E; 12 and <italic>C</italic> &#x003C; 12 hydrocarbons, PCB, heavy metals and metalloids such as As, Cu, Hg, Ni, Cr) and/or trophic resources (phytopigments, BPC). The DistLM was run using the forward model selection procedure and the R<sup>2</sup> model selection criteria (<xref ref-type="bibr" rid="B4">Anderson et al., 2008</xref>). In the model, only the concentrations of contaminants present in the first 10 cm depth of the sediments were used since it represents the sediment layer where the majority of meiofaunal assemblages were encountered.</p>
<p>Uni- and multivariate PERMANOVA, pair wise tests, CAP, DistLM forward, SIMPER tests were carried out using the routines included in the software PRIMER 6 + (<xref ref-type="bibr" rid="B22">Clarke and Gorley, 2006</xref>).</p>
</sec>
</sec>
<sec id="S3" sec-type="results">
<title>Results</title>
<sec id="S3.SS1">
<title>Environmental Variables</title>
<p>Sediment grain size, bottom water temperature and salinity in the 42 stations are reported in <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 2</xref>. The grain size was quite uniform in all the transects investigated and was generally characterized by a high percentage of sand within 10-m depth (ranging within a relatively wide interval: from 39 to 99%). Between 10 and 12-m depth an increase of the quantitative relevance of the silt-clay fraction was observed (15&#x2013;45%). The gravel fraction was generally very low (&#x003C;5%) in all the stations investigated, except for 1 m depth station in the M1 SNI transect, where it accounted for ca. 60%.</p>
<p>Bottom water temperature in the control transects ranged from 19.62 to 21.27&#x00B0;C, whereas in the SNI transects from 19.93 to 20.97&#x00B0;C. Bottom water salinity in the control and SNI transects ranged from 37.59 to 37.92 and from 37.38 to 37.75, respectively.</p>
</sec>
<sec id="S3.SS2">
<title>Contaminants in Sediments</title>
<p>Heavy metal, metalloid, aliphatic hydrocarbon (<italic>C</italic> &#x003C; 12 and <italic>C</italic> &#x003E; 12), PAH and PCB concentrations are reported in <xref ref-type="supplementary-material" rid="DS1">Supplementary Tables 3</xref>&#x2013;<xref ref-type="supplementary-material" rid="DS1">6</xref>.</p>
<p>Among inorganic contaminants, in the SNI transects, As concentrations ranged from 1.7 to 13 mg kg<sup>&#x2013;1</sup> in the stations located at 1 and 12-m depth in M1 and M3 transects, respectively and, in the control transects from 7.2 to 10 mg kg<sup>&#x2013;1</sup> in the stations located at 1 and 3-m depth in C3 transect, respectively (<xref ref-type="fig" rid="F2">Figure 2A</xref>). A similar pattern was observed for Cr (overall range: 2.3&#x2013;20.0 mg kg<sup>&#x2013;1</sup>, <xref ref-type="fig" rid="F2">Figure 2D</xref>), Cd (overall range: 0.05&#x2013;0.13 mg kg<sup>&#x2013;1</sup>, <xref ref-type="fig" rid="F2">Figure 2C</xref>), Ni (overall range: 2.9&#x2013;25.0 mg kg<sup>&#x2013;1</sup>), Pb (overall: 1.4&#x2013;7.3 mg kg<sup>&#x2013;1</sup>), Va (overall range: 2.5&#x2013;19.0 mg kg<sup>&#x2013;1</sup>) and Zn (overall range: 6.4&#x2013;34.0 mg kg<sup>&#x2013;1</sup>) concentrations. The highest concentrations of Hg (0.03 mg kg<sup>&#x2013;1</sup>, <xref ref-type="fig" rid="F2">Figure 2B</xref>) and Cu (7.8 mg kg<sup>&#x2013;1</sup>) were also observed in the station at 12 m depth in M3 transect.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Bathymetric distribution of the contaminant concentrations in the sediments of the SNI (M1, M2, and M3) and control (C1, C2, and C3) transects. <bold>(A)</bold> Arsenic (As, mg kg<sup>&#x2013;1</sup>), <bold>(B)</bold> Mercury (Hg, mg kg<sup>&#x2013;1</sup>), <bold>(C)</bold> Cadmium (Cd, mg kg<sup>&#x2013;1</sup>), <bold>(D)</bold> Chrome (Cr, mg kg<sup>&#x2013;1</sup>), <bold>(E)</bold> Hydrocarbons <italic>C</italic> &#x003E; 12 (mg kg<sup>&#x2013;1</sup>), and <bold>(F)</bold> Polycyclic Aromatic Hydrocarbons (PAHs) concentrations (mg kg<sup>&#x2013;1</sup>).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-813887-g002.tif"/>
</fig>
<p>The highest concentrations of aliphatic hydrocarbons <italic>C</italic> &#x003E; 12 were observed in some stations of the SNI transects, especially at 1 m depth in M1 transect (14,000 mg kg<sup>&#x2013;1</sup>, <xref ref-type="fig" rid="F2">Figure 2E</xref>). In the 10&#x2013;20 cm sediment layers analyzed, the concentrations of <italic>C</italic> &#x003C; 12 and <italic>C</italic> &#x003E; 12 hydrocarbons were similar or lower compared to the superficial layers (0&#x2013;10 cm).</p>
<p>Total PAH concentrations in the sediment ranged from 0.28 to 3757.65 &#x03BC;g kg<sup>&#x2013;1</sup>, with the highest value observed at 1 m depth in the M1 transect (<xref ref-type="fig" rid="F2">Figure 2F</xref>). Fluoranthene accounted for 21% of the total PAH concentrations. In all the sediment samples, PAHs concentrations were almost entirely represented by high molecular weight PAHs (PM &#x003E; 178, representing 40&#x2013;98%) whereas low molecular weight PAHs (PM &#x003C; 178) generally contributed to a lower extent (2&#x2013;60%). In the sub-superficial sediment samples analyzed (10&#x2013;20 cm), the concentrations of PAHs were 5&#x2013;9 times higher in M1 and M2 transects compared to the 0&#x2013;10 cm sediment layer.</p>
<p>PCB congeners concentrations were lower than 0.1 &#x03BC;g kg<sup>&#x2013;1</sup> in both control and SNI transects (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 6</xref>), with values much lower than thresholds established by the national (D. M. 152/2006, 173/2016) and international laws (e.g., Canadian Council of Ministers of the Environment 2002).</p>
<p>The m-ERM-q values calculated on the basis of heavy metal and PAH concentrations revealed that all stations of the control and SNI transects were classified as low priority sites, except for the station at 1 m depth of the M1 transect, which was classified as high-priority site, with 76% probability to have toxicological effects.</p>
</sec>
<sec id="S3.SS3">
<title>Concentration of the Biochemical Components and Nutritional Quality of Organic Matter</title>
<p>Chlorophyll-<italic>a</italic>, phaeopigment, total phytopigment, protein, carbohydrate, lipid, and biopolymeric C (BPC) concentrations, in all sampling stations are reported in <xref ref-type="supplementary-material" rid="DS1">Supplementary Table 7</xref>.</p>
<p>PERMANOVA analyses showed no significant effect of the factor &#x201C;Condition,&#x201D; and a significant effect of the factor &#x201C;Transect (Condition) &#x00D7; Depth&#x201D; on Chlorophyll-<italic>a</italic>, phaeopigment, total phytopigment concentrations (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Output of PERMANOVA analyses on the concentrations of organic matter biochemical components, meiofaunal abundance, biomass, richness of taxa, and taxonomic composition.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">Source</td>
<td valign="top" align="center"><italic>df</italic></td>
<td valign="top" align="center"><italic>MS</italic></td>
<td valign="top" align="center"><italic>F</italic></td>
<td valign="top" align="center"><italic>P</italic></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>Chlorophyll-a</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">5.5</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.430</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">5.9</td>
<td valign="top" align="center">3.8</td>
<td valign="top" align="center">0.013</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">5.4</td>
<td valign="top" align="center">3.4</td>
<td valign="top" align="center">0.031</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">2.5</td>
<td valign="top" align="center">1.6</td>
<td valign="top" align="center">0.186</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.6</td>
<td valign="top" align="center">13.3</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.1</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Phaeopigments</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">5.0</td>
<td valign="top" align="center">1.5</td>
<td valign="top" align="center">0.284</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">10.8</td>
<td valign="top" align="center">8.2</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">2.5</td>
<td valign="top" align="center">1.9</td>
<td valign="top" align="center">0.140</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1.7</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">0.277</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">28.1</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.0</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Total phytopigments</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">6.0</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">0.305</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">9.1</td>
<td valign="top" align="center">6.4</td>
<td valign="top" align="center">0.002</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">3.6</td>
<td valign="top" align="center">2.5</td>
<td valign="top" align="center">0.06</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">2.0</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">0.258</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">29.4</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.0</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Proteins</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">10.8</td>
<td valign="top" align="center">4.0</td>
<td valign="top" align="center">0.069</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">6.1</td>
<td valign="top" align="center">2.5</td>
<td valign="top" align="center">0.051</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(Condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">1.9</td>
<td valign="top" align="center">0.8</td>
<td valign="top" align="center">0.529</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">0.6</td>
<td valign="top" align="center">0.758</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">2.4</td>
<td valign="top" align="center">38.4</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.1</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Carbohydrates</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">3.2</td>
<td valign="top" align="center">0.3</td>
<td valign="top" align="center">0.732</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4.4</td>
<td valign="top" align="center">4.8</td>
<td valign="top" align="center">0.003</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">14.8</td>
<td valign="top" align="center">16.2</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.513</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">8.0</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.1</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Lipids</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">2.2</td>
<td valign="top" align="center">0.3</td>
<td valign="top" align="center">0.812</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4.4</td>
<td valign="top" align="center">3.7</td>
<td valign="top" align="center">0.012</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">11.9</td>
<td valign="top" align="center">10.0</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.7</td>
<td valign="top" align="center">0.616</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.2</td>
<td valign="top" align="center">6.7</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.2</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Biopolymeric C</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">11.1</td>
<td valign="top" align="center">2.3</td>
<td valign="top" align="center">0.167</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">7.9</td>
<td valign="top" align="center">5.2</td>
<td valign="top" align="center">0.003</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">4.1</td>
<td valign="top" align="center">2.7</td>
<td valign="top" align="center">0.052</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1.5</td>
<td valign="top" align="center">1.0</td>
<td valign="top" align="center">0.465</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.5</td>
<td valign="top" align="center">30.4</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.1</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Meiofaunal abundance</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1363300.0</td>
<td valign="top" align="center">2.1</td>
<td valign="top" align="center">0.171</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">4017900.0</td>
<td valign="top" align="center">10.6</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">529020.0</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">0.256</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">286780.0</td>
<td valign="top" align="center">0.8</td>
<td valign="top" align="center">0.600</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">380410.0</td>
<td valign="top" align="center">3.0</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">127130.0</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Meiofaunal biomass</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">8105.5</td>
<td valign="top" align="center">1.0</td>
<td valign="top" align="center">0.434</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">88832.0</td>
<td valign="top" align="center">21.8</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">2712.4</td>
<td valign="top" align="center">0.7</td>
<td valign="top" align="center">0.634</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">9597.3</td>
<td valign="top" align="center">2.4</td>
<td valign="top" align="center">0.069</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">4075.0</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.537</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">4397.0</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Richness of meiofaunal taxa</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">0.0</td>
<td valign="top" align="center">0.5</td>
<td valign="top" align="center">0.924</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">6.5</td>
<td valign="top" align="center">6.8</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">0.7</td>
<td valign="top" align="center">0.7</td>
<td valign="top" align="center">0.588</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1.2</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">0.299</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.0</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.563</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">1.0</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Meiofaunal composition</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">3006.4</td>
<td valign="top" align="center">1.2</td>
<td valign="top" align="center">0.297</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">11528.0</td>
<td valign="top" align="center">8.8</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">1097.1</td>
<td valign="top" align="center">0.8</td>
<td valign="top" align="center">0.582</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">2401.7</td>
<td valign="top" align="center">1.8</td>
<td valign="top" align="center">0.042</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1304.5</td>
<td valign="top" align="center">3.0</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">437.2</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Ostracods</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">2.8</td>
<td valign="top" align="center">2.2</td>
<td valign="top" align="center">0.110</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">8.2</td>
<td valign="top" align="center">5.2</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">0.6</td>
<td valign="top" align="center">0.4</td>
<td valign="top" align="center">0.796</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">0.9</td>
<td valign="top" align="center">0.554</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.6</td>
<td valign="top" align="center">2.6</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.6</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Nematodes: Copodes ratio</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1.3</td>
<td valign="top" align="center">0.5</td>
<td valign="top" align="center">0.820</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">3.1</td>
<td valign="top" align="center">2.2</td>
<td valign="top" align="center">0.086</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">4.9</td>
<td valign="top" align="center">3.5</td>
<td valign="top" align="center">0.025</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">0.7</td>
<td valign="top" align="center">0.5</td>
<td valign="top" align="center">0.802</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">3.5</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.4</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Nematodes: Kinorhynchs ratio</italic></td>
<td valign="top" align="left">Condition</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">4.0</td>
<td valign="top" align="center">0.8</td>
<td valign="top" align="center">0.515</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">21.7</td>
<td valign="top" align="center">20.6</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition)</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">1.2</td>
<td valign="top" align="center">1.1</td>
<td valign="top" align="center">0.391</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Condition &#x00D7; depth</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">5.0</td>
<td valign="top" align="center">4.8</td>
<td valign="top" align="center">0.006</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Transect(condition) &#x00D7; depth</td>
<td valign="top" align="center">24</td>
<td valign="top" align="center">1.1</td>
<td valign="top" align="center">3.6</td>
<td valign="top" align="center">0.001</td>
</tr>
<tr>
<td valign="top" align="left"/><td valign="top" align="left">Residual</td>
<td valign="top" align="center">84</td>
<td valign="top" align="center">0.3</td>
<td/>
<td/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>Number of permutations &#x003E; 977, df, degrees of freedom, MS, mean square, F, F-ratio, P, probability.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<p>The bathymetric distribution of phytopigment concentrations in all transects is reported in <xref ref-type="fig" rid="F3">Figure 3A</xref>. Overall, average concentrations of phytopigments were higher in the C3 control transect (4.76 &#x00B1; 0.83&#x03BC;g g<sup>&#x2013;1</sup>) than in the other transects where values were very similar (on average 3.31 &#x03BC;g g<sup>&#x2013;1</sup>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Bathymetric distribution of biochemical components of the sedimentary organic matter in the SNI (M1, M2, and M3) and control (C1, C2, and C3) transects. <bold>(A)</bold> Phytopigment concentrations in the different stations and transects (on the left) and their average values (on the right), <bold>(B)</bold> BPC concentrations (on the left) and their average values (on the right), <bold>(C)</bold> output of canonical analysis of principal coordinates (CAP) based on organic matter biochemical components (protein, carbohydrate, lipid and total phytopigment concentrations).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-813887-g003.tif"/>
</fig>
<p>PERMANOVA analyses showed no significant effect of the factor &#x201C;Condition,&#x201D; and a significant effect of the factor &#x201C;Transect (Condition) &#x00D7; Depth&#x201D; on concentrations and biochemical composition of sedimentary organic matter (<xref ref-type="table" rid="T1">Table 1</xref>). Pair-wise tests on concentrations and biochemical composition of organic matter showed significant differences among both control and SNI transects at almost all water depths.</p>
<p>The bathymetric distribution of protein, carbohydrate and lipid concentrations is reported in <xref ref-type="supplementary-material" rid="DS1">Supplementary Figure 1</xref>. Protein concentrations were on average lower in M1 and M2 transects (0.44 &#x00B1; 0.09 &#x2013; 0.52 &#x00B1; 0.6 mg g<sup>&#x2013;1</sup>) than in the other transects (on average 0.80 mg g<sup>&#x2013;1</sup>; <xref ref-type="supplementary-material" rid="DS1">Supplementary Figure 1A</xref>). Carbohydrate and lipid concentrations in the C3 transects were up to &#x003E; 2 times higher than values found in the other transects (range for carbohydrates: 0.15 &#x00B1; 0.02&#x2013;0.40 &#x00B1; 0.05 mg g<sup>&#x2013;1</sup> in C2 and C3 transects, respectively, range for lipids: 0.13 &#x00B1; 0.01&#x2013;0.32 &#x00B1; 0.05 mg g<sup>&#x2013;1</sup> in M3 and C3 transects, respectively, <xref ref-type="supplementary-material" rid="DS1">Supplementary Figures 1B,C</xref>).</p>
<p>Along the bathymetric gradient, lower BPC concentrations were observed at shallower stations (1 m depth) compared to the deeper ones (<xref ref-type="fig" rid="F3">Figure 3B</xref>). BPC concentrations ranged from 0.13 &#x00B1; 0.01 to 1.19 &#x00B1; 0.02 mgC g<sup>&#x2013;1</sup> in the control stations and from 0.08 &#x00B1; 0.01 to 0.74 &#x00B1; 0.03 mgC g<sup>&#x2212;1</sup> in the SNI stations. Overall, the highest average values of BPC were observed in the control transects, especially in C3 (0.82 &#x00B1; 0.06 mgC g<sup>&#x2013;1</sup>) compared to those observed within the SNI area. In both SNI and control transects BPC concentrations were on average 0.6 mgC g<sup>&#x2212;1</sup>, while the contribution of autotrophic C to BPC was ca. 23.5%.</p>
<p>CAP analysis on biochemical composition of organic matter along the transects showed that most stations segregated together except for some stations along the C3 transect, driven by increasing concentrations of the different biochemical components of organic matter (<xref ref-type="fig" rid="F3">Figure 3C</xref>).</p>
</sec>
<sec id="S3.SS4">
<title>Abundance, Biomass and Diversity of Meiofauna Assemblages</title>
<p>Overall the PERMANOVA analyses showed no significant effect of the factor &#x201C;Condition&#x201D; on meiofaunal abundance, biomass and richness of taxa. A significant effect of the factor &#x201C;Transect (Condition) &#x00D7; Depth&#x201D; was observed only on meiofaunal abundance (<xref ref-type="table" rid="T1">Table 1</xref>). Pair-wise tests showed significant differences among the three control transects and among the three SNI transects at 1 m water depth, and along the bathymetric gradient of each transect.</p>
<p>In particular, average meiofaunal abundances along the SNI transects ranged from 692.7 &#x00B1; 236.6 to 730.6 &#x00B1; 161.8 ind. 10 cm<sup>&#x2013;2</sup> (in M1 and M2, respectively) and in the controls from 724.7 &#x00B1; 135.2 to 1163.7 &#x00B1; 341.9 ind. 10 cm<sup>&#x2013;2</sup> (in C2 and C1, respectively; <xref ref-type="fig" rid="F4">Figure 4A</xref>). Meiofaunal abundances showed a significant decreasing pattern with increasing water depth from 3 to 12-m depth in all the SNI and control transects, although the lowest meiofauna abundances were observed at 1-m depths (except for the C1 transect; <xref ref-type="fig" rid="F4">Figure 4A</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Bathymetric distribution of meiofaunal abundance, biomass and community structure in the sediments of SNI (M1, M2 and M3) and control (C1, C2 and C3) transects. <bold>(A)</bold> Meiofauna abundances in the different stations (on the left) and transects and their average values (on the right), <bold>(B)</bold> biomasses in the different stations and transects (on the left) and their average values (on the right); <bold>(C)</bold> richness of taxa in the different stations and transects (on the left) and their cumulative values (on the right), and <bold>(D)</bold> community structure in the different stations and transects (on the left) and their overall community structure (on the right). The group &#x201C;Others&#x201D; contains Polychaeta, Kinorhyncha, Bivalvia, Acarina, Cumacea, Amphipoda, Gastropoda, Cladocera, Ostracoda, and Tanaidacea.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-813887-g004.tif"/>
</fig>
<p>Significant differences in meiofaunal biomass were found at different depths along each transect, with a general decrease of biomass with increasing water depths (from 3 to 12 m, <xref ref-type="fig" rid="F4">Figure 4B</xref>). The shallowest station (1 m depth) of each transect showed the lowest biomass values. Overall average values of meiofaunal biomasses in the SNI transects were not significantly different from those outside the SNI (ranging from 108.0 &#x00B1; 39.5 to 147.4 &#x00B1; 35.7 &#x03BC;gC 10 cm<sup>&#x2013;2</sup> in M1 SNI and C1 control transects, respectively; <xref ref-type="fig" rid="F4">Figure 4B</xref>).</p>
<p>Richness of meiofaunal taxa ranged from 3 to 8 in the control transects and from 3 to 7 in the SNI transects (<xref ref-type="fig" rid="F4">Figure 4C</xref>). The richness of meiofaunal taxa significantly changed along all the transects. More marked differences were observed along the C1 and C2 transects and in the M1 SNI transect (<xref ref-type="fig" rid="F4">Figure 4C</xref>), where stations located at 1-m depth were characterized by the lowest taxa richness (from 3 to 4). The total number of meiofaunal taxa observed both in the SNI and control areas was 9&#x2013;10 and the presence/absence of meiofaunal taxa in the SNI and control transects did not show a clear pattern.</p>
<p>Meiofaunal assemblages were dominated by nematodes (78&#x2013;98% of the total abundance, except for SNI M1 at 1 m) at all stations (<xref ref-type="fig" rid="F4">Figure 4D</xref>), followed by harpacticoid copepods (0&#x2013;20%) and ostracods (0&#x2013;43%). The contribution of other taxa (mainly polychaetes, kinorhynchs and bivalves) accounted less than 1% each. Temporary meiofaunal taxa (here defined as the juveniles of macrofaunal organisms, <italic>sensu</italic> <xref ref-type="bibr" rid="B41">Higgins and Thiel, 1988</xref>) were represented by polychaetes and bivalves and their average contribution on total meiofauna was &#x003C; 0.2% in both SNI and control transects. The average abundance of meiofaunal taxa identified in the SNI and control transects is reported in <xref ref-type="table" rid="T2">Table 2</xref>.</p>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>List of meiofaunal taxa identified in the SNI and control transects and their average abundance.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="center"><italic>SNI M1</italic><hr/></td>
<td valign="top" align="center"><italic>SNI M2</italic><hr/></td>
<td valign="top" align="center"><italic>SNI M3</italic><hr/></td>
<td valign="top" align="center"><italic>C1</italic><hr/></td>
<td valign="top" align="center"><italic>C2</italic><hr/></td>
<td valign="top" align="center"><italic>C3</italic><hr/></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">avg &#x00B1; SE</td>
<td valign="top" align="center">avg &#x00B1; SE</td>
<td valign="top" align="center">avg &#x00B1; SE</td>
<td valign="top" align="center">avg &#x00B1; SE</td>
<td valign="top" align="center">avg &#x00B1; SE</td>
<td valign="top" align="center">avg &#x00B1; SE</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>Nematoda</italic></td>
<td valign="top" align="center">645.54 &#x00B1; 218.42</td>
<td valign="top" align="center">666.73 &#x00B1; 154.44</td>
<td valign="top" align="center">609.37 &#x00B1; 180.21</td>
<td valign="top" align="center">1105.53 &#x00B1; 336.19</td>
<td valign="top" align="center">652.4 &#x00B1; 127.32</td>
<td valign="top" align="center">759.5 &#x00B1; 113.94</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Copepoda</italic></td>
<td valign="top" align="center">31.97 &#x00B1; 11.61</td>
<td valign="top" align="center">49.87 &#x00B1; 8.96</td>
<td valign="top" align="center">86.42 &#x00B1; 34.42</td>
<td valign="top" align="center">45.64 &#x00B1; 14.85</td>
<td valign="top" align="center">56.84 &#x00B1; 20.24</td>
<td valign="top" align="center">97.37 &#x00B1; 19.79</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Polychaeta</italic></td>
<td valign="top" align="center">1.40 &#x00B1; 0.60</td>
<td valign="top" align="center">1.26 &#x00B1; 0.31</td>
<td valign="top" align="center">1.54 &#x00B1; 0.53</td>
<td valign="top" align="center">1.26 &#x00B1; 0.29</td>
<td valign="top" align="center">1.26 &#x00B1; 0.74</td>
<td valign="top" align="center">2.99 &#x00B1; 1.14</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Kinorhyncha</italic></td>
<td valign="top" align="center">0.19 &#x00B1; 0.12</td>
<td valign="top" align="center">0.51 &#x00B1; 0.33</td>
<td valign="top" align="center">0.28 &#x00B1; 0.23</td>
<td valign="top" align="center">1.73 &#x00B1; 1.67</td>
<td valign="top" align="center">2.19 &#x00B1; 2.03</td>
<td valign="top" align="center">0.61 &#x00B1; 0.5</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Bivalvia</italic></td>
<td valign="top" align="center">1.03 &#x00B1; 0.22</td>
<td valign="top" align="center">1.91 &#x00B1; 0.64</td>
<td valign="top" align="center">1.63 &#x00B1; 0.32</td>
<td valign="top" align="center">1.49 &#x00B1; 0.69</td>
<td valign="top" align="center">2.10 &#x00B1; 0.66</td>
<td valign="top" align="center">0.98 &#x00B1; 0.38</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Acarina</italic></td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Cumacea</italic></td>
<td valign="top" align="center">0.14 &#x00B1; 0.14</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.65 &#x00B1; 0.55</td>
<td valign="top" align="center">0.14 &#x00B1; 0.10</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Amphipoda</italic></td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.42 &#x00B1; 0.37</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Gastropoda</italic></td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Cladocera</italic></td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Ostracoda</italic></td>
<td valign="top" align="center">12.27 &#x00B1; 8.12</td>
<td valign="top" align="center">10.13 &#x00B1; 2.31</td>
<td valign="top" align="center">11.48 &#x00B1; 3.86</td>
<td valign="top" align="center">7.05 &#x00B1; 1.97</td>
<td valign="top" align="center">9.29 &#x00B1; 3.74</td>
<td valign="top" align="center">8.12 &#x00B1; 3.36</td>
</tr>
<tr>
<td valign="top" align="left"><italic>Tanaidacea</italic></td>
<td valign="top" align="center">0.09 &#x00B1; 0.09</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0 &#x00B1; 0</td>
<td valign="top" align="center">0.28 &#x00B1; 0.15</td>
<td valign="top" align="center">0.05 &#x00B1; 0.05</td>
<td valign="top" align="center">0.19 &#x00B1; 0.14</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn><p><italic>SE, standard error.</italic></p></fn>
</table-wrap-foot>
</table-wrap>
<p>PERMANOVA analyses carried out on taxonomic composition of meiofauna revealed a no significant effect of the factor &#x201C;Condition&#x201D; and a significant effect of the interactions &#x201C;Condition &#x00D7; Depth&#x201D; and &#x201C;Transect (Condition) &#x00D7; Depth&#x201D; (<xref ref-type="table" rid="T1">Table 1</xref>). Significant differences between SNI and Control were found only at 12 m and among transects (at 1 and 3-m depth) of the SNI and control areas (<xref ref-type="table" rid="T1">Table 1</xref>). A higher contribution of nematodes was found in the control transects compared to the SNI transects (91&#x2013;95%, and 45&#x2013;94%, respectively).</p>
<p>Significant differences were also found along the bathymetric gradient in each transect (<xref ref-type="table" rid="T1">Table 1</xref>). A higher contribution of ostracods was found in the stations located at 1-m depth compared to the deepest stations (<xref ref-type="supplementary-material" rid="DS1">Supplementary Figure 3</xref>). Although along the bathymetric gradients of the transects significant differences in the number of individuals belonging to ostracods were observed (except for the SNI M2), the differences between the SNI and the control transects were not significant (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
<p>SIMPER analyses showed an average dissimilarity among the compositions of meiofaunal assemblages in the stations of the control or SNI transects ranging from 10.3 to 44.3% (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 8</xref>), with the highest dissimilarity observed at 10-m depth in both cases. Similarly, when we compared the control and SNI transects we found an average dissimilarity among meiofaunal assemblage compositions ranging from 14.6 to 42.4% (at 3 and 10-m depth, respectively).</p>
<p>Overall, nematodes, copepods, ostracods, bivalves, polychaetes and kinorhynchs were the taxa responsible for the observed dissimilarity.</p>
<p>The nematode to copepod abundance ratio ranged from 3.83 to 107.15 in the control transects and from 4.25 to 80.25 in the SNI transects (<xref ref-type="supplementary-material" rid="DS1">Supplementary Figure 2</xref>). Significant differences were found along the bathymetric gradients, especially in the control transects and among different SNI transects (<xref ref-type="table" rid="T1">Table 1</xref>). However, differences between SNI and control transects were not observed.</p>
<p>The nematode to kinorhynch abundance ratio ranged from 30.84 to 2745.96 in the control transects (with some significant differences at 1, 3, and 12 m) and from 6.86 to 1806.14 in the SNI transects (<xref ref-type="supplementary-material" rid="DS1">Supplementary Figure 2</xref>). No significant differences were detected between SNI and control transects (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
</sec>
<sec id="S3.SS5">
<title>Drivers of the Distribution of Meiofauna Composition</title>
<p>DistLM forward analysis showed that the variance of meiofaunal assemblage composition in the investigated sediments was significantly explained for 75.2% by <italic>C</italic> &#x003E; 12 hydrocarbons (49.7%), water depth (12.4%),% of sand (7.1%) and total phytopigments (6.0%) (<xref ref-type="supplementary-material" rid="DS1">Supplementary Table 9</xref>). When the most contaminated station (SNI M1 transect at 1 m depth) was excluded from the analyses <italic>C</italic> &#x003E; 12 aliphatic hydrocarbons remained the variable that mostly influenced meiofaunal assemblage composition (36%) followed by depth (18.3%) and total phytopigment concentrations (9.3%).</p>
</sec>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>Industrial activities, even if interrupted for several years, have often left chronic marine pollution as a legacy (<xref ref-type="bibr" rid="B62">Romano et al., 2004</xref>; <xref ref-type="bibr" rid="B36">Gambi et al., 2020a</xref>; <xref ref-type="bibr" rid="B55">Naidu et al., 2021</xref>). This was also the expectation of the marine area facing the chronically contaminated industrial area of Falconara M.ma (central-western Adriatic Sea) enclosed since 2002 among the most polluted Italian sites and among the &#x201C;problem areas&#x201D; of the Europe&#x2019;s seas (<xref ref-type="bibr" rid="B2">Andersen et al., 2019</xref>; <xref ref-type="bibr" rid="B7">Ausili et al., 2020</xref>). However, the present investigation, revealed that heavy metal concentrations in all the investigated sediments were typically low or at values lower than those expected to cause detrimental biological effects (above Effects-Range-Median; <xref ref-type="bibr" rid="B46">Long et al., 1995</xref>). We only found a single exception for the metalloid As, whose higher levels could be due to the release of the former Montedison industry, which produced fertilizers. In terms of organic contaminants, although the concentrations of <italic>C</italic> &#x003E; 12 aliphatic hydrocarbons and PAHs were higher in a few stations of the SNI area compared to the control ones, these were orders of magnitudes lower than values found in other chronically contaminated marine areas (<xref ref-type="bibr" rid="B62">Romano et al., 2004</xref>, <xref ref-type="bibr" rid="B63">2008</xref>; <xref ref-type="bibr" rid="B54">Morroni et al., 2020</xref>; <xref ref-type="bibr" rid="B68">Tangherlini et al., 2020</xref>) with values below ERL thresholds of moderately polluted coastal areas of other European basins (<xref ref-type="bibr" rid="B14">Baumard et al., 1998</xref>; <xref ref-type="bibr" rid="B19">Bihari et al., 2007</xref>; <xref ref-type="bibr" rid="B15">Berto et al., 2009</xref>). Both for heavy metals and PAHs, the m-ERM-q values corresponded to low environmental risk levels, with the only exception provided by a station of the SNI area (located very close to a stream outfall potentially releasing contaminants deriving from the abandoned chemical plant), which was classified as at high risk.</p>
<p>To explore the possibility that contaminants have been buried in sub-superficial sediment layers, we also analyzed organic and inorganic contaminants in a subset of samples and observed that only two of them, showed an increase of the concentrations below 10 cm sediment depth. Unfortunately, literature data about the contamination levels in the same area of the SNI are not available or accessible. However, we hypothesize that when the SNI was established, approximately 2 decades ago, the contamination was likely present only in surface sediments, to be then diluted or removed by sediment resuspension or buried over time. The decrease in the contamination levels might be due to the specific environmental characteristics of the area (e.g., hydro-dynamic regime due to the Western Adriatic Current that flows southward; <xref ref-type="bibr" rid="B72">Wang and Pinardi, 2002</xref>) or at the high levels of bioturbation (<xref ref-type="bibr" rid="B69">Thibodeaux and Bierman, 2003</xref>) and microbial degradation activity (<xref ref-type="bibr" rid="B1">Acosta-Gonz&#x00E1;lez and Marqu&#x00E9;s, 2016</xref>; <xref ref-type="bibr" rid="B32">Dell&#x2019;Anno et al., 2021</xref>) that might have promoted the biological attenuation of the contaminants (<xref ref-type="bibr" rid="B61">R&#x00F6;ling and Van Verseveld, 2002</xref>).</p>
<p>We also found that the sediments within the SNI were characterized by biopolymeric C concentrations (used as a proxy of trophic state; <xref ref-type="bibr" rid="B58">Pusceddu et al., 2009</xref>, <xref ref-type="bibr" rid="B56">2011</xref>) even lower than outside. In particular, the southern control transect was characterized by the highest organic load, and higher carbohydrate and lipid concentrations, which generally indicate a secondary origin of the organic matter (<xref ref-type="bibr" rid="B58">Pusceddu et al., 2009</xref>). This can be attributed to the organic enrichment caused by the nearby Esino river outflow (<xref ref-type="bibr" rid="B20">Capotondi et al., 2015</xref>; <xref ref-type="bibr" rid="B17">Bianchelli et al., 2018</xref>).</p>
<p>Based on the results of the biopolymeric C concentration and its autotrophic contribution, all the investigated sediments, without distinction between SNI and control transects, could be classified as &#x201C;meso-eutrophic&#x201D; (<xref ref-type="bibr" rid="B58">Pusceddu et al., 2009</xref>), consistently with previous observations in other coastal areas of the Central Adriatic Sea (<xref ref-type="bibr" rid="B18">Bianchelli et al., 2016</xref>, <xref ref-type="bibr" rid="B17">2018</xref>).</p>
<p>To better assess the health status of the marine ecosystem in the investigated area, we assessed the responses of meiofauna assemblages. On average, meiofaunal abundance, biomass and richness of taxa in the SNI transects were similar to the controls, despite the high variability among stations at different water depths along each transect. In particular, the stations at 1-m depth, characterized by a coarser sedimentary granulometry, showed different patterns of meiofauna compared to the other stations, but such patterns were independent of the distance from the abandoned industrial plant. The analysis of meiofaunal richness revealed low values (from 3 to 8 taxa per transect), suggesting an overall &#x201C;poor/moderate environmental quality&#x201D; according to the environmental status classification based on this descriptor (<xref ref-type="bibr" rid="B30">Danovaro et al., 2004</xref>). A similar number or even lower of meiofaunal taxa was reported in extremely impacted sediments from other SNIs (<xref ref-type="bibr" rid="B36">Gambi et al., 2020a</xref>) and affected by historical mining (<xref ref-type="bibr" rid="B35">Gambi et al., 2020b</xref>). However, since the low richness of higher taxa was here observed also in the control transects and, previously, in other areas of the Adriatic coast (<xref ref-type="bibr" rid="B18">Bianchelli et al., 2016</xref>; <xref ref-type="bibr" rid="B65">Semprucci et al., 2016</xref>; <xref ref-type="bibr" rid="B66">Semprucci et al., 2017</xref>), we argue that should not be directly linked to the chemical impact deriving from the past industrial activity of the Montedison plant or from other nearby sources (i.e., the river and the oil refinery) present within the entire SNI.</p>
<p>Further confirmation of the lack of a negative &#x201C;SNI effect&#x201D; on meiofaunal assemblages was obtained by the analysis of the composition of meiofaunal assemblages, which varied among stations and depths, but without significant differences between SNI and control sediments.</p>
<p>These findings were consistent with those obtained by the analysis of the biological indices based on the abundance ratios between nematodes and copepods and between nematodes and kinorhynchs. Copepodes and kinorhynchs have been reported to be affected by organic enrichment/contamination, thus revealing their greater sensitivity compared to other meiofaunal taxa (<xref ref-type="bibr" rid="B51">Mirto et al., 2012</xref>; <xref ref-type="bibr" rid="B8">Baguley et al., 2015</xref>; <xref ref-type="bibr" rid="B26">Dal Zotto et al., 2016</xref>) like nematodes, which seem to be more tolerant to such anthropogenic impacts (<xref ref-type="bibr" rid="B64">Semprucci and Balsamo, 2012</xref>).</p>
<p>However, these biological indices did not change between SNI and control transects, and in particular for the nematode to kinorhynch ratio, a decrease was found moving away from the putative source of impact, thus confirming the lack of any negative effects due to the former Montedison plant.</p>
<p>Although no evident criticalities were observed in the SNI transects in terms of contaminations and trophic state when compared to the non-SNI areas, the results of the multivariate analysis indicated that the variance of the meiofaunal assemblage composition was mostly influenced by the concentrations of <italic>C</italic> &#x003E; 12 aliphatic hydrocarbons, followed by depth, grain size, and trophic resources. The origin of these low concentrations of aliphatic hydrocarbons remains unclear and could be attributed either to different anthropogenic sources (including activities previously conducted by the former Montedison plant) or to biogenic compounds of terrestrial and marine origin (<xref ref-type="bibr" rid="B9">Bajt, 2012</xref>).</p>
<p>Overall, these findings suggest the high sensitivity of meiofaunal assemblages to hydrocarbon contamination, which however, being slight, did not affect the overall health status of these biological components more than outside the SNI.</p>
</sec>
<sec id="S5" sec-type="conclusion">
<title>Conclusion</title>
<p>The results of this study reveal that the levels of organic and inorganic pollutants in the investigated sediments of the Falconara M.ma SNI are generally lower than those expected to be harmful for marine life. The health status of meiofaunal assemblages in terms of abundance, biomass and diversity do not show any sign of biological impact and thus the current classification of the marine area as a chronically/highly polluted site appears unjustified. Due to the high resilience of meiofaunal assemblages, however, we cannot exclude that such a finding is the result of the specific biological component considered, nor that other faunal components (e.g., macrofauna) may be affected by the historical contaminations of the chemical plant. At the same time, the results reported here, allow us to hypothesize possible self-purification and recovery processes also associated with the interdiction to human activities. If the hypothesis of the natural recovery of the investigated area of the SNI of Falconara M.ma were confirmed by other studies, the plans for the identification and monitoring of the most polluted areas in Italy should necessarily be redefined also according to the Water Framework, the Marine Strategy Framework and the Environmental Quality Standard Directives.</p>
</sec>
<sec id="S6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="DS1">Supplementary Material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>CC conceived the study. AD&#x2019;A, CC, LM, and IB defined sampling strategy. ML and GL participated in the sampling activity. SB, EF, CG, and ML supervised laboratory activities. CC, SV, SC, ER, AD&#x2019;A, and SB contributed to data elaboration and interpretation. NS contributed to data visualization. CC, SB, and NS drafted the first version of the manuscript. All authors contributed to manuscript preparation and to the final version.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="pudiscl1" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="S8" sec-type="funding-information">
<title>Funding</title>
<p>This study has been supported by the project BIOBLUTECH &#x201C;Blue Biotechnologies for restoring marine ecosystems of the contaminated Site of National Interest (SIN) ex Montedison (Falconara M.ma), ID 9204 supported by Cariverona Foundation.</p>
</sec>
<ack>
<p>We thank Dr. Claudia Ciotti for her support in providing information about the Site of National Interest of Falconara M.ma, and Dr. Martina Meola for her participation in the sampling and laboratory activities.</p>
</ack>
<sec id="S10" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2021.813887/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2021.813887/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.PDF" id="DS1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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