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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2022.987363</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Positive effects of replacing commercial feeds by fresh black soldier fly (<italic>Hermetia illucens</italic>) larvae in the diets of Pacific white shrimp (<italic>Litopenaeus vannamei</italic>): Immune enzyme, water quality, and intestinal microbiota</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>He</surname>
<given-names>Yuhang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Naida</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Aolin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Sizhe</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Che</surname>
<given-names>Yanjin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Huang</surname>
<given-names>Shu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yi</surname>
<given-names>Qilin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1838582"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname>
<given-names>Yuexin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Jiang</surname>
<given-names>Yusheng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1899862"/></contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Innovation Team for Crustacean Aquaculture and Restocking, Dalian Ocean University</institution>, <addr-line>Dalian</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Sanya Tropical Fisheries Research Institute</institution>, <addr-line>Sanya</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Helena Peres, University of Porto, Portugal</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Ida Kinasih, Universitas Islam Negeri Sunan Gunung Djati Bandung, Indonesia; Fernanda Cornejo, National Autonomous University of Mexico, Mexico; Jia-Song Zhang, South China Sea Fisheries Research Institute (CAFS), China; Chengbo Sun, Guangdong Ocean University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Yusheng Jiang, <email xlink:href="mailto:jys@dlou.edu.cn">jys@dlou.edu.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Aquatic Physiology, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>08</day>
<month>09</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>987363</elocation-id>
<history>
<date date-type="received">
<day>07</day>
<month>07</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>16</day>
<month>08</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 He, Zhang, Wang, Wang, Che, Huang, Yi, Ma and Jiang</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>He, Zhang, Wang, Wang, Che, Huang, Yi, Ma and Jiang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>This study investigated the effects of replacing commercial feeds with fresh black soldier fly larvae (BSFL) on the immune enzyme activities, water quality in the culturing environment, and intestinal microbiota of Pacific white shrimp (<italic>Litopenaeus vannamei</italic>). Five different feeding regimes were designed, in which 0% (control group), 25%, 50%, 75%, and 100% commercial feeds were replaced with equal wet weight of fresh BSFL, respectively. The experiment lasted for 45 days, and the results showed that the serum T-NOS (total nitric oxide synthase), AKP (alkaline phosphatase), and ACP (acid phosphatase) activity were significantly increased in the BSFL25% group. However, the immune enzymes of the hepatopancreas decreased significantly in all the BSFL-containing groups compared to the control group. Total ammonia nitrogen concentrations throughout the experimental phase and nitrate concentrations in the middle and later phases of the experiment were negatively correlated with the replacement rate of fresh BSFL in the diet, whereas pH was positively correlated with the replacement rate of fresh BSFL in the diet. Proteobacteria and Bacteroidetes were dominant phyla in the intestines of shrimps, but the relative abundances of Proteobacteria and Firmicutes decreased, with those of Bacteroidetes and Planctomycetes increased in the BSFL-containing groups. Among them, higher relative abundances of potential probiotics such as <italic>Motilimonas</italic>, <italic>Shimia</italic>, <italic>Pseudoalteromonas</italic>, and <italic>Shewanella</italic> and lower relative abundance of genus <italic>Vibrio</italic> were observed in the fresh BSFL-containing groups. Furthermore, shrimps fed with BSFL-containing diets had higher bacterial richness and diversity in the intestines. In conclusion, a proper replacement of commercial feed with fresh BSFL had a positive effects on the immune-related enzyme activities, water quality, and intestinal health in the <italic>L. vannamei</italic>.</p>
</abstract>
<kwd-group>
<kwd>Pacific white shrimp <italic>Litopenaeus vannamei</italic>
</kwd>
<kwd>immune enzyme activity</kwd>
<kwd>water quality</kwd>
<kwd>intestinal microbiota</kwd>
<kwd>black soldier fly <italic>Hermetia illucens</italic>
</kwd>
</kwd-group>
<contract-num rid="cn001">No. 2020YFD0900202, 2018YFD0900400</contract-num>
<contract-sponsor id="cn001">National Key Research and Development Program of China<named-content content-type="fundref-id">10.13039/501100012166</named-content>
</contract-sponsor>
<counts>
<fig-count count="7"/>
<table-count count="7"/>
<equation-count count="0"/>
<ref-count count="67"/>
<page-count count="15"/>
<word-count count="7347"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Global aquaculture production of shrimp has increased dramatically within the past two decades. The Pacific white shrimp, <italic>Litopenaeus vannamei</italic>, is the most important farmed crustacean species, contributing 53% of the total farmed crustacean production (<xref ref-type="bibr" rid="B65">Yuan et&#xa0;al., 2021</xref>). With the upgrading of consumption, <italic>L. vannamei</italic> has become an attractive and popular species for aquaculture in the United States, Ecuador, Thailand, and China (<xref ref-type="bibr" rid="B47">Saoud et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B36">Mcgraw et&#xa0;al., 2010</xref>). Meanwhile, this has also brought challenges to the feed industry, because over 90% of farmed shrimp rely on high-protein diets containing a high percentage of marine fish meal (FM), which is a major ingredient in commercial feeds due to its high digestible protein content, balanced amino acid composition, and high palatability (<xref ref-type="bibr" rid="B10">Cruz-Su&#xe1;rez et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B30">Lemos et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B11">Council, 2011</xref>). However, FM also has a lot of disadvantages: the first of which is that the resource of FM cannot meet the continuously increasing demand of the aquaculture industry, and the contradiction is further aggravated by the natural resource decline and global competition for the FM from livestock and poultry industry (<xref ref-type="bibr" rid="B1">Adelizi et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B46">Samira and Mehdi, 2015</xref>) . In addition, the processing of FM produces a large number of pollutants containing nitrogen and sulfur compounds, which could be deleterious to human healthe and  the environment. (<xref ref-type="bibr" rid="B41">Oyarzun et&#xa0;al., 2019</xref>). Finally, FM contains a large amount of phosphorus and nitrogen. It can cause the deterioration of farming water quality and the occurrence of diseases in aquatic animals when the unabsorbed nitrogen and phosphorus are discharged into the farming environment with residual bait and manure (<xref ref-type="bibr" rid="B29">Lai et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B34">Marinho-Soriano et&#xa0;al., 2009</xref>). Therefore, it has become an important topic for aquaculture industry to find a new protein source. The Food and Agricultural Organization (FAO) has highlighted the potential utility of insects as food and feed sources, which usually possess an outstanding capacity to upgrade low-quality organic material, require minimal water and cultivable land, and emit little greenhouse gases to produce large quantities of high-quality animal protein (<xref ref-type="bibr" rid="B59">Van Huis, 2013</xref>). Among them, <italic>Locusta migratoria</italic>, <italic>Tenebrio molitor</italic>, and <italic>Hermetia illucens</italic> are candidates to replace FM in commercial feed (<xref ref-type="bibr" rid="B17">EMEHINAIYE, 2012</xref>; <xref ref-type="bibr" rid="B20">Gasco et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B5">Bruni et&#xa0;al., 2018</xref>).</p>
<p>The black soldier fly (<italic>Hermetia illucens</italic>) is one of the most promising insect species for commercial exploitation in China, and it could live on animal manure or plant material by converting low-value organic waste into a protein-rich biomass (<xref ref-type="bibr" rid="B14">Diener et&#xa0;al., 2009</xref>). This makes it a suitable source of food for aquatic animals (<xref ref-type="bibr" rid="B39">Newton et&#xa0;al., 1977</xref>; <xref ref-type="bibr" rid="B3">Bondari and Sheppard, 1981</xref>). Recently, black soldier fly larvae (BSFL) has been used as a substitute for FM in several aquatic animal species including <italic>Oncorhynchus mykiss</italic> (<xref ref-type="bibr" rid="B5">Bruni et&#xa0;al., 2018</xref>), <italic>Pelteobagrus fulvidraco</italic> (<xref ref-type="bibr" rid="B63">Xiao et&#xa0;al., 2018</xref>), and <italic>Cherax cainii</italic> (<xref ref-type="bibr" rid="B18">Foysal et&#xa0;al., 2019</xref>). Interestingly, some studies have indicated that BSFL have the effect of enhancing the immunity of aquatic animals, such as <italic>C. cainii</italic> (<xref ref-type="bibr" rid="B18">Foysal et&#xa0;al., 2019</xref>) and <italic>Cyprinus carpio</italic> var. Jian (<xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2017</xref>). In addition, BSFL have also been demonstrated to promote growth and nutrition absorptive capacity in aquatic animals (<xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B63">Xiao et&#xa0;al., 2018</xref>).</p>
<p>Although there have been a lot of reports on feeding <italic>L. vannamei</italic> by BSFL (<xref ref-type="bibr" rid="B12">Cummins et&#xa0;al., 2017</xref>), these studies have more emphasis on the evaluation of the effects of replacing FM in commercial feed with BSFL in powder form on aquatic animals. Processing insects into powder form as the raw protein source is an industrial necessity and easy to preserve. However, fresh insects also have their advantages, such as simple feeding, low nutrient losses, and easier nutrition enhancement. A recent study by our team showed no significant negative effects on shrimp growth when up to 50% of the commercial feed was replaced by fresh BSFL (<xref ref-type="bibr" rid="B22">He et&#xa0;al., 2022</xref>). Aquaculture outcome is not defined solely by growth performance, but issues concerning aquatic animals&#x2019; welfare also need to be taken into accounts, such as the water quality of the aquaculture environment and the immune capacity of different tissues. Commercial feeds have been found to negatively affect water quality parameters including pH, nitrite nitrogen (NO<sub>2</sub>-N), and total ammonia nitrogen (TAN), which may in turn affect the growth of aquatic animals (<xref ref-type="bibr" rid="B43">Pullin and Lowe-McConnell, 1982</xref>). Fresh BSFL instead of commercial feed may be a potential method to reduce water quality degradation in aquaculture environments. This capacity can maintain the health of aquatic animals and control disease outbreaks, which may improve farming profits and reduce the use of antibiotics in aquaculture. In addition, we would like to increase this replacement rate through more comprehensive studies. To the best of our knowledge, no information is available about the effects of feeding BSFL on the intestinal microbiota of <italic>L. vannamei</italic>. Intestinal microbiota helps the host to digest indigestible feed components such as cellulose, and it also participates in the maturation of intestinal mucosa, immune response, and disease resistance (<xref ref-type="bibr" rid="B35">Maslowski and Mackay, 2011</xref>; <xref ref-type="bibr" rid="B33">Llewellyn et&#xa0;al., 2014</xref>). Fresh insects contain bioactive compounds that appear to modulate intestinal microbiota and have a positive impact on animal health (<xref ref-type="bibr" rid="B19">Gasco et&#xa0;al., 2018</xref>). Therefore, it is necessary to evaluate whether the intestinal microbial changes of shrimp are the factors limiting the replacement rate and finding ways to improve the replacement rate.</p>
<p>In this experiment, the effects of fresh BSFL on hepatopancreas and serum immune enzyme activity, the water quality of the aquaculture environment, and the intestinal microbiota of <italic>L. vannamei</italic> were assessed to provide more information for farming <italic>L. vannamei</italic> using fresh BSFL as a protein source and to contribute for sustainable development of aquaculture industry.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and method</title>
<sec id="s2_1">
<title>Feeding regime</title>
<p>In this experiment, five feeding regimes were designed by replacing different levels (0%, 25%, 50%, 75%, and 100%, respectively) of commercial feeds with fresh BSFL. The commercial feeds (crude protein: 42%; crude lipid: 6%) were used as a control feeding regime. The BSFL were hatched in our laboratory and were fed the bran regularly every day (the bran and water mix by a volume ratio of 3:1). Then, the BSFL were collected and stored at &#x2212;20&#xb0;C before they turn into mature insects. The proximate composition of commercial feeds and fresh BSFL was shown in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. Feeding regimes and theoretical proximate composition of ingested diets for each group were listed in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Proximate composition of commercial feed and fresh BSFL (% weight).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Proximate composition</th>
<th valign="top" align="center">Commercial feed</th>
<th valign="top" align="center">Fresh BSFL</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Crude protein</td>
<td valign="top" align="center">42.0</td>
<td valign="top" align="center">17.8</td>
</tr>
<tr>
<td valign="top" align="left">Crude ash</td>
<td valign="top" align="center">16.0</td>
<td valign="top" align="center">2.2</td>
</tr>
<tr>
<td valign="top" align="left">Crude lipid</td>
<td valign="top" align="center">4.0</td>
<td valign="top" align="center">7.4</td>
</tr>
<tr>
<td valign="top" align="left">phosphorus</td>
<td valign="top" align="center">1.2</td>
<td valign="top" align="center">0.3</td>
</tr>
<tr>
<td valign="top" align="left">moisture and other volatile</td>
<td valign="top" align="center">11.0</td>
<td valign="top" align="center">69.3</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>The black soldier fly larvae were hatched in our laboratory and were fed the bran regularly every day (the bran and water mix by a volume ratio of 3:1). Commercial feeds were bought from a local retailor and its protein sources were mainly fish meal and soybean meal.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Feeding times and proximate composition of the experimental diets.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left"/>
<th valign="top" colspan="5" align="center">Experiment diets</th>
</tr>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">BSFL0%</th>
<th valign="top" align="center">BSFL25%</th>
<th valign="top" align="center">BSFL50%</th>
<th valign="top" align="center">BSFL75%</th>
<th valign="top" align="center">BSFL100%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" colspan="6" align="left">Feeding times (times/day)</td>
</tr>
<tr>
<td valign="top" align="left">Commercial feed</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">0</td>
</tr>
<tr>
<td valign="top" align="left">fresh BSFL</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">4</td>
</tr>
<tr>
<td valign="top" colspan="6" align="left">Proximate composition (% weight)</td>
</tr>
<tr>
<td valign="top" align="left">Crude protein</td>
<td valign="top" align="center">42.00</td>
<td valign="top" align="center">35.95</td>
<td valign="top" align="center">29.90</td>
<td valign="top" align="center">23.85</td>
<td valign="top" align="center">17.80</td>
</tr>
<tr>
<td valign="top" align="left">Crude ash</td>
<td valign="top" align="center">16.00</td>
<td valign="top" align="center">12.55</td>
<td valign="top" align="center">9.10</td>
<td valign="top" align="center">5.65</td>
<td valign="top" align="center">2.20</td>
</tr>
<tr>
<td valign="top" align="left">Crude fat</td>
<td valign="top" align="center">4.00</td>
<td valign="top" align="center">4.85</td>
<td valign="top" align="center">5.70</td>
<td valign="top" align="center">6.55</td>
<td valign="top" align="center">7.40</td>
</tr>
<tr>
<td valign="top" align="left">phosphorus</td>
<td valign="top" align="center">1.20</td>
<td valign="top" align="center">0.98</td>
<td valign="top" align="center">0.75</td>
<td valign="top" align="center">0.53</td>
<td valign="top" align="center">0.30</td>
</tr>
<tr>
<td valign="top" align="left">moisture and other volatile</td>
<td valign="top" align="center">11.00</td>
<td valign="top" align="center">25.58</td>
<td valign="top" align="center">40.15</td>
<td valign="top" align="center">54.73</td>
<td valign="top" align="center">69.30</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>BSFL0% is the control group. The replacement rate was controlled by adjusting the feeding times of fresh BSFL.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s2_2">
<title>Feeding experiment</title>
<p>
<italic>L. vannamei</italic> postlarvae (body length is about 0.4&#xa0;cm) were purchased from a commercial hatchery (Hainan Province, China) and were reared by our team on a basic non-insect diet. The larval shrimp were temporarily reared for 7 days before the experiment to acclimate to the rearing environment and experimental diets. Then, the experimental shrimp were fasted for 12&#xa0;h and weighed. A total of 750 shrimp (body length: 3.27 &#xb1; 0.23&#xa0;cm) were randomly distributed into 15 glass fiber tanks filled with 300 L of seawater, at a density of 50 shrimp per tank; the five experimental diets were randomly assigned to triplicate tanks. The shrimp used in the experiment were equivalent in size and weight. Shrimp were fed four times a day (6:00, 12:00, 18:00, and 24:00) during the 45-day feeding. The feeding weight of each group was based on the feeding amount from hand-feeding to visual satisfaction and on the weight of shrimp, whereas the replacement rate of fresh BSFL was controlled by adjusting the feeding times of fresh BSFL. The remaining feeds and feces were removed daily and about 20% of water was exchanged every day. The water temperature, salinity, and dissolved oxygen (DO) were maintained at 28&#xb0;C &#xb1; 3&#xb0;C, 27 &#xb1; 2, and 7.02 &#xb1; 0.69 mg/L, respectively.</p>
</sec>
<sec id="s2_3">
<title>Sample collection of shrimp</title>
<p>Shrimps were starved for 12&#xa0;h before sampling. Then, the whole intestines of three shrimps from each tank were aseptically dissected, the intestinal contents were collected and immediately put in liquid nitrogen, and samples were preserved with dry ice and sent to Biomarker Technology Co. Ltd (Beijing, China) for DNA extraction and analyses by high-throughput sequencing. The blood of another five shrimps in each tank was collected and mixed with anticoagulant solution (1:1), and then the separated serum was removed by centrifuging (3000 rpm, 10&#xa0;min) after keeping for 6&#xa0;h at 4&#xb0;C, which were immediately frozen in lipid nitrogen and stored at &#x2212;80&#xb0;C for serum immune enzyme activity analysis. In addition, the hepatopancreas of three shrimps from each tank was quickly removed, frozen in liquid nitrogen, then stored at &#x2212;80&#xb0;C until the determination of immune enzyme activities.</p>
</sec>
<sec id="s2_4">
<title>Assay of immune enzyme activities of serum and hepatopancreas</title>
<p>The hepatopancreas samples were homogenized in 10 volumes (w/v) of ice-cold physiological saline solution and centrifuged at 4000 rpm at 4&#xb0;C for 20&#xa0;min, and the supernatant was conserved at 4&#xb0;C. The activity of alkaline phosphatase (AKP), acid phosphatase (ACP), and total nitric oxide synthase (T-NOS) in the hepatopancreas and serum was analyzed according to the instructions of commercially available kits (Nanjing Jiancheng Biotech Co., Nanjing, China). The protein content of hepatopancreas samples was determined as described by <xref ref-type="bibr" rid="B4">Bradford (1976)</xref>.</p>
</sec>
<sec id="s2_5">
<title>Measurement of chemical water quality parameters</title>
<p>The DO (mg/L), temperature (T, &#xb0;C), pH, and salinity (S) of the water in the shrimp tanks were measured daily using a portable water quality monitor-P1 (Zhongyi IOT Ltd. China) before feeding the shrimp. For other water quality parameters, 100&#xa0;mL of water samples was gathered from tanks every 4 or 5 days and was used for further analysis. Subsequently, the water sample was inspected for NO<sub>2</sub>-N and TAN following Standard Methods (<xref ref-type="bibr" rid="B45">Rice et al., 2012</xref>), and the chemical oxygen demand (COD) was measured according to Standard Methods (<xref ref-type="bibr" rid="B15">Eaton et al., 2005</xref>).</p>
</sec>
<sec id="s2_6">
<title>DNA extraction, PCR amplification of 16<italic>S</italic> amplicon sequencing, and sequence data processing</title>
<p>The shrimp intestinal microbiota was analyzed by 16<italic>S</italic>  high-throughput sequencing. Total DNA was extracted using MN NucleoSpin 96 Soil Kit. Subsequently, the full-length 16s rRNA gene was amplified using barcoded conserved primers 27F (5&#x2032;- AGRGTTTGATYNTGGCTCAG-3&#x2032;) and 1492R (5&#x2032;-TASGGHTACCTTGTTASGACTT-3&#x2032;). The PCR amplification was performed in a total volume of 50 &#x3bc;L containing 25 &#x3bc;L of KOD FX Neo Buf (2&#xd7;), 10 &#x3bc;L of 2 mM dNTP, 1 &#x3bc;L of KOD FX Neo (TOYOBO), 2.5 &#x3bc;L of 10 &#x3bc;M each primer, and 60 ng of DNA template, and finally, ddH<sub>2</sub>O was added to 50 &#x3bc;L. PCR amplification was performed on the PCR system under the following conditions: (a) 1*(3&#xa0;min at 95&#xb0;C), (b) 25*(30 s at 95&#xb0;C; 30 s at 55&#xb0;C; 1&#xa0;min at 72&#xb0;C), and (c) 10&#xa0;min at 72&#xb0;C, 10&#xb0;C until halted by the user (<xref ref-type="bibr" rid="B64">Yuan et&#xa0;al., 2019</xref>).</p>
<p>The PCR products were purified, quantified, and homogenized to form a sequencing library (SMRT Bell), and then the quality inspection was carried out. The product that qualified the library was sequenced on a PacBio Sequel platform at Biomarker Technology Co. Ltd (Beijing, China). Bioinformatics analysis for this research was performed with the help of BMK Cloud (Biomarker Technologies Co., Ltd., Beijing, China). Filtering and demultiplexing of raw reads were generated by sequencing to obtain circular consensus sequencing (CCS) reads by SMRT Link software (version 8.0) (<italic>minPasses</italic> &#x2265; 5 and <italic>minPredictedAccuracy</italic> &#x2265; 0.9). The CCS sequences were subsequently assigned to corresponding samples according to the barcode by lima (version 1.7.0). The Cutadapt quality control program (version 2.7) was used for quality filtering by identifying forward and reverse primers, and then discarding CCS reads without primers and reads beyond the length range (1,200&#x2013;1,650 bp). Chimeric sequences were detected and removed using the UCHIME algorithm (V 8.1) to obtain the clean reads.</p>
</sec>
<sec id="s2_7">
<title>Measurement of bacterial communities</title>
<p>The resulting datasets were analyzed using USEARCH (V 10.0). The obtained high-quality sequences were clustered as operational taxonomic units (OTUs) based on 97% similarity. and filtered for OTUs with reabundace&lt;0.005%. Taxonomy annotation of OTUs was performed using the SILVA database (release132) by RDF classifier (V 2.2) (confidence threshold was 80%). Selected OTUs were aligned against the core alignment template of the SILVA database using PyNAST (V 1.2.2) to facilitate downstream diversity analysis. The OTU abundance information was normalized by a standard sequence number corresponding to the sample with the fewest sequences, and further analysis of alpha and beta diversity was performed based on the normalized output data. All sequences in this study have been deposited in the Sequence Read Archive (SRA) of the NCBI database under the accession number PRJNA859541. The beta diversity was analyzed by non-metric multidimensional scaling (NMDS) based on the unweighted UniFrac distance matrix to show differences in microbial community structure between each group. The linear discriminant analysis (LDA) effect size (LEfSe) analysis was used to analyze the differences in microbial community abundance between the control group and fresh BSFL-containing groups; the threshold for the LDA score was set at 4. The alpha diversity (Chao1, Ace, Shannon, and Simpson) and beta diversity were calculated and displayed by BMKCloud (<uri xlink:href="http://www.biocloud.net">www.biocloud.net</uri>).</p>
</sec>
<sec id="s2_8">
<title>Calculations and statistical analysis</title>
<p>One-way analysis of variance (ANOVA) was used to test the effect of dietary manipulation. Firstly, all the data were tested for normal distribution and homogeneity of variance. Then, the group means could be further compared using the LSD test for multiple comparisons. All statistical analyses were performed using the SPSS 23 software. The level of significant difference was set at <italic>P</italic> &lt; 0.05 and the results were presented as means &#xb1; S.E.M. (standard error of the mean).</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>The immune enzyme activities after farming experiment in serum and hepatopancreas</title>
<p>The activities of T-NOS, AKP, and ACP in the serum increased first and then decreased with the increase of the replacement rate of fresh BSFL. The activity of T-NOS was higher in the group containing fresh BSFL than that of the control group, and the maximum value was found in the BSFL75% group, with significant differences compared to the control group (<italic>P</italic> &lt; 0.05). The maximum value of AKP activity was found in the BSFL25%, and when the replacement level was equal to or above 50%, the activity of AKP was significantly decreased compared to the control group (<italic>P</italic> &lt; 0.05). The maximum activity of ACP was found in the BSFL25%, with significant differences (<italic>P</italic> &lt; 0.05) compared to the control group and non-significant differences (<italic>P</italic>&gt;0.05) in the other BSFL-containing replacement groups (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>).</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>The serum immune enzyme activities of <italic>L. vannamei</italic> fed different experimental diets for 8 weeks.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Enzyme activity</th>
<th valign="top" colspan="5" align="center">Diets</th>
</tr>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">BSFL0%</th>
<th valign="top" align="center">BSFL25%</th>
<th valign="top" align="center">BSFL50%</th>
<th valign="top" align="center">BSFL75%</th>
<th valign="top" align="center">BSFL100%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">T-NOS (U/ml)</td>
<td valign="top" align="center">16.27 &#xb1; 2.57<sup>b</sup>
</td>
<td valign="top" align="center">25.12 &#xb1; 4.66<sup>ab</sup>
</td>
<td valign="top" align="center">26.55 &#xb1; 2.42<sup>ab</sup>
</td>
<td valign="top" align="center">32.54 &#xb1; 0.86<sup>a</sup>
</td>
<td valign="top" align="center">21.98 &#xb1; 5.95<sup>ab</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">AKP (U/100&#xa0;ml)</td>
<td valign="top" align="center">13.49 &#xb1; 1.68<sup>a</sup>
</td>
<td valign="top" align="center">16.68 &#xb1; 2.44<sup>a</sup>
</td>
<td valign="top" align="center">3.21 &#xb1; 1.40<sup>b</sup>
</td>
<td valign="top" align="center">2.09 &#xb1; 0.41<sup>b</sup>
</td>
<td valign="top" align="center">3.03 &#xb1; 0.63<sup>b</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">ACP (U/100&#xa0;ml)</td>
<td valign="top" align="center">10.13 &#xb1; 2.84<sup>b</sup>
</td>
<td valign="top" align="center">15.01 &#xb1; 4.33<sup>a</sup>
</td>
<td valign="top" align="center">8.35 &#xb1; 1.11<sup>b</sup>
</td>
<td valign="top" align="center">7.69 &#xb1; 2.20<sup>b</sup>
</td>
<td valign="top" align="center">7.87 &#xb1; 2.49<sup>b</sup>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Values are presented as mean &#xb1; S.E.M of samples.</p>
</fn>
<fn>
<p>Values of each parameter in the same row with different superscripts are significantly different (<italic>P</italic>&lt;0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>The activity of T-NOS, AKP, and ACP of shrimp hepatopancreas was negatively related to the proportion of fresh BSFL in the diet, with T-NOS activity that significantly reduced (<italic>P</italic> &lt; 0.05) when the BSFL replacement level was equal to or above 50%. The hepatopancreas AKP and ACP activity in all BSFL-containing groups was significantly lower (<italic>P</italic> &lt; 0.05) than that of the control group (<xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>).</p>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>The hepatopancreatic immune enzyme activities of <italic>L. vannamei</italic> fed different experimental diets for 8 weeks.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Enzyme activity</th>
<th valign="top" colspan="5" align="center">Diets</th>
</tr>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">BSFL0%</th>
<th valign="top" align="center">BSFL25%</th>
<th valign="top" align="center">BSFL50%</th>
<th valign="top" align="center">BSFL75%</th>
<th valign="top" align="center">BSFL100%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">T-NOS (U/ml)</td>
<td valign="top" align="center">0.40 &#xb1; 0.04<sup>a</sup>
</td>
<td valign="top" align="center">0.36 &#xb1; 0.05<sup>ab</sup>
</td>
<td valign="top" align="center">0.28 &#xb1; 0.03<sup>b</sup>
</td>
<td valign="top" align="center">0.27 &#xb1; 0.03<sup>b</sup>
</td>
<td valign="top" align="center">0.25 &#xb1; 0.07<sup>b</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">AKP (U/g prot)</td>
<td valign="top" align="center">16.04 &#xb1; 1.28<sup>a</sup>
</td>
<td valign="top" align="center">10.21 &#xb1; 0.34<sup>b</sup>
</td>
<td valign="top" align="center">10.50 &#xb1; 1.86<sup>b</sup>
</td>
<td valign="top" align="center">9.88 &#xb1; 1.69<sup>b</sup>
</td>
<td valign="top" align="center">8.16 &#xb1; 0.10<sup>b</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">ACP (U/g prot)</td>
<td valign="top" align="center">17.62 &#xb1; 2.11<sup>a</sup>
</td>
<td valign="top" align="center">12.42 &#xb1; 1.88<sup>b</sup>
</td>
<td valign="top" align="center">12.09 &#xb1; 2.79<sup>bc</sup>
</td>
<td valign="top" align="center">9.57 &#xb1; 1.41<sup>bc</sup>
</td>
<td valign="top" align="center">7.91 &#xb1; 1.21<sup>c</sup>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Values are presented as mean &#xb1; S.E.M of samples.</p>
</fn>
<fn>
<p>Values of each parameter in the same row with different superscripts are significantly different (P&lt;0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<title>Chemical water parameters of shrimp tanks</title>
<p>Chemical water parameters were monitored and recorded in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>. The results of water chemical parameters showed considerable variations among the experimental groups throughout the 45 days of the experimental period. The TAN and NO<sub>2</sub>-N trends of shrimp tanks were negatively related to the dietary fresh BSFL replacement level, whereas the value of NO<sub>2</sub>-N in the middle and late periods of culture was decreased significantly in BSFL-containing diet groups than that of the control group (<italic>P</italic>&lt;0.05). The highest concentration of TAN and NO<sub>2</sub>-N was observed in the BSFL0% group with 0.88 &#xb1; 0.30 mg/L and 1.918 &#xb1; 0.17 mg/L, respectively, whereas the lowest concentration of TAN and NO<sub>2</sub>-N was observed in the BSFL100% group with 0.13 &#xb1; 0.04 mg/L and 0.02 &#xb1; 0.01 mg/L, respectively. The differences in the value of COD of shrimp tanks were insignificant among the treatments (<italic>P</italic>&gt;0.05). In the middle and late phase of culture, the value of pH of shrimp tanks was positively related to the replacement rate of fresh BSFL in the diet, where the pH value was significantly higher (<italic>P</italic>&lt;0.05) than that of the control group when the BSFL replacement level was equal to or above 75%.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Trends of total ammonia nitrogen (TAN) <bold>(A)</bold>, NO<sub>2</sub>-N <bold>(B)</bold> chemical oxygen demand (COD) <bold>(C)</bold> and pH <bold>(D)</bold> concentrations (mean&#xb1;SD per sampling date) in different treatments throughout the experimental period.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g001.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>PacBio sequencing and microbial complexity in shrimp intestine</title>
<p>A total of 177,569 CCS sequences were obtained after 15 samples were sequenced and identified by Barcode; each sample generated at least 6,081 CCS sequences with an average of 7,838 CCS sequences. The sequences with more than 97% similarity were clustered into OTUs to exploring the bacterial community diversity among all treatments. Both rarefaction analysis and Shannon index curves indicated that all sequenced samples reached the asymptote (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The rarefaction analysis indicated that the rarefaction curves reached the asymptote and sufficient sampling depth was achieved for each sample when the number of random sampling sequences of each sample exceeds 5,000 (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The bacterial richness and diversity indices were calculated from OTUs to estimate and compare the bacterial diversity in each diet (<xref ref-type="table" rid="T5">
<bold>Table&#xa0;5</bold>
</xref>). The richness indices of Chao1 and Ace varied from 58 to 246.44 and from 67.42 to 242.65, respectively. The intestinal microbial richness of shrimp was positively correlated with dietary fresh BSFL levels according to the Chao1 and Ace indices, with a significant increase observed in the BSFL75% and BSFL100% groups (<italic>P</italic>&lt;0.05). Bacterial diversity was estimated by the Shannon and Simpson indices, which varied from 1.15 to 3.61 and from 0.06 to 0.48, respectively. The Simpson and Shannon indices showed a trend of increasing and then decreasing intestinal microbial diversity of shrimp as the dietary fresh BSFL level increased; the maximum was found in the BSFL75% group, with a significant increase when the fresh BSFL level was equal to or above 75% (<italic>P</italic>&lt;0.05). The Good&#x2019;s coverage value was &gt; 0.99, indicating that a high degree of sequencing coverage, with all microbiota in each group, was represented by the number of OTUs identified.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Rarefaction curves <bold>(A)</bold> and Shannon-Wiener curves <bold>(B)</bold> of the intestinal bacterial community of <italic>L. vannamei</italic> fed with diets having different levels of BSFL for 45 days.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g002.tif"/>
</fig>
<table-wrap id="T5" position="float">
<label>Table&#xa0;5</label>
<caption>
<p>Good&#x2019;s coverage value and alpha diversity indices values of intestinal microbiota of <italic>L. vannamei</italic> fed with diets having different levels of BSFL for 45 days.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Items</th>
<th valign="top" align="center" colspan="5">Diets</th>
</tr>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="center">BSFL0%</th>
<th valign="top" align="center">BSFL25%</th>
<th valign="top" align="center">BSFL50%</th>
<th valign="top" align="center">BSFL75%</th>
<th valign="top" align="center">BSFL100%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Good&#x2019;s coverage (%)</td>
<td valign="top" align="center">0.99 &#xb1; 0.00</td>
<td valign="top" align="center">0.99 &#xb1; 0.00</td>
<td valign="top" align="center">0.99 &#xb1; 0.00</td>
<td valign="top" align="center">0.99 &#xb1; 0.00</td>
<td valign="top" align="center">0.99 &#xb1; 0.00</td>
</tr>
<tr>
<td valign="top" align="left">Observed OTUs</td>
<td valign="top" align="center">125 &#xb1; 64.25</td>
<td valign="top" align="center">150.33 &#xb1; 42.72</td>
<td valign="top" align="center">159.67 &#xb1; 18.63</td>
<td valign="top" align="center">177 &#xb1; 2.45</td>
<td valign="top" align="center">197.67 &#xb1; 20.86</td>
</tr>
<tr>
<td valign="top" align="left">Chao1</td>
<td valign="top" align="center">134.09 &#xb1; 58.34<sup>b</sup>
</td>
<td valign="top" align="center">181.34 &#xb1; 48.57<sup>ab</sup>
</td>
<td valign="top" align="center">190.36 &#xb1; 17.17<sup>ab</sup>
</td>
<td valign="top" align="center">224.52 &#xb1; 14.33<sup>a</sup>
</td>
<td valign="top" align="center">230.16 &#xb1; 14.12<sup>a</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Ace</td>
<td valign="top" align="center">136.7 &#xb1; 53.96<sup>b</sup>
</td>
<td valign="top" align="center">183.44 &#xb1; 41.56<sup>ab</sup>
</td>
<td valign="top" align="center">198.97 &#xb1; 17.60<sup>ab</sup>
</td>
<td valign="top" align="center">217.36 &#xb1; 9.09<sup>a</sup>
</td>
<td valign="top" align="center">229.22 &#xb1; 16.72<sup>a</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Simpson</td>
<td valign="top" align="center">0.28 &#xb1; 0.14<sup>a</sup>
</td>
<td valign="top" align="center">0.20 &#xb1; 0.06<sup>ab</sup>
</td>
<td valign="top" align="center">0.12 &#xb1; 0.03<sup>b</sup>
</td>
<td valign="top" align="center">0.07 &#xb1; 0.00<sup>b</sup>
</td>
<td valign="top" align="center">0.11 &#xb1; 0.01<sup>b</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Shannon</td>
<td valign="top" align="center">2.23 &#xb1; 0.78<sup>b</sup>
</td>
<td valign="top" align="center">2.55 &#xb1; 0.66<sup>ab</sup>
</td>
<td valign="top" align="center">2.97 &#xb1; 0.25<sup>ab</sup>
</td>
<td valign="top" align="center">3.49 &#xb1; 0.08<sup>a</sup>
</td>
<td valign="top" align="center">3.30 &#xb1; 0.12<sup>a</sup>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Report data are expressed as mean &#xb1; S.E.M. The means were compared by ANOVA (P&lt;0.05).</p>
</fn>
<fn>
<p>Different superscript letters on the same column indicate significant differences after post hoc Tukey&#x2019;s test.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_4">
<title>Composition and difference of microbiota among five groups</title>
<p>In shrimp intestine, 87 OTUs (31.07%, 33.4%, 35.95%, 31.52%, and 29.39% in diet BSFL0%, BSFL25%, BSFL50%, BSFL75%, and BSFL100% groups, respectively) were shared among all samples (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Significant differences were also observed among bacterial communities (beta diversity) in type (unweighted UniFrac) of taxa. The feeding effect on intestinal microbiota of shrimp was explained as displayed in unweighted NMDS (non-metric multi-dimensional scaling) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). The bacterial communities of fresh BSFL-containing diet groups clustered together and separately from the control group were shown by the NMDS plot. It suggested that the composition of the shrimp intestinal community is significantly influenced by feeding on fresh BSFL. At the phylum level, the intestinal microbiota of shrimps was mainly dominated by Proteobacteria, Bacteroidetes, and Planctomycetes regardless of the diet. The relative abundance of Proteobacteria in all fresh BSFL-containing groups was lower than that of the control group, with a significant difference when the fresh BSFL replacement level was equal to or above 50%. The relative abundance of Planctomycetes was higher in all fresh BSFL-containing groups than that of the control group, with significant differences found in the BSFL100% group. The relative abundance of Bacteroidetes was higher in all groups containing fresh BSFL than that of the control group, with significant differences found in the BSFL25% and BSFL75% groups. Only Firmicutes were not the dominant phyla in the intestinal microbiota of shrimp whose diet contained fresh BSFL than that of the control group, whereas Verrucomicrobia and Actinobacteria were found to be dominant phyla in the higher fresh BSFL level groups (BSFL75% and BSFL100%) and control groups (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref>; <xref ref-type="table" rid="T6">
<bold>Table&#xa0;6</bold>
</xref>). At the genus level, the intestinal microbiota of shrimp was mainly dominated by <italic>Ruegeria</italic> and <italic>Vibrio</italic> regardless of the diet. The relative abundance of <italic>Ruegeria</italic> was higher in all groups containing fresh BSFL than that of the control group, with significant differences found in the BSFL100% group. The trend in the relative abundance of <italic>Vibrio</italic> was the opposite compared to <italic>Ruegeria</italic>, with significant differences found in the BSFL100% group. Only <italic>Fusibacter</italic> and <italic>Ralstonia</italic> were not the dominant genera in the intestinal microbiota of the group containing fresh BSFL than that of the control group, while the intestinal microbiota of the groups containing fresh BSFL was characterized by a high relative abundance of <italic>Motilimonas</italic>, <italic>Shimia</italic>, <italic>Pseudoalteromonas</italic>, and <italic>Donghicola</italic>. <italic>Shewanella</italic> was the dominant genus found only in the BSFL50%, BSFL75%, and BSFL100% groups (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref> and <xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Venn diagram showing the distribution of all OTUs shared by <italic>L. vannamei</italic> in five groups. The figures in the Venn diagram indicate the number of the sequences that are associated with the OTUs in each group.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g003.tif"/>
</fig>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Non-MetricMulti-Dimensional Scaling (NMDS) of unweighted distances of intestinal microbiota associated to different diets.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Relative abundances of bacterial phyla in the intestine of <italic>L. vannamei</italic> fed with diets having different levels of BSFL. The most dominant phyla (&gt; 1% of the total sequences) are shown in the schematic individually, and the relative abundances of main phyla is indicated in <xref ref-type="table" rid="T6">
<bold>Table&#xa0;6</bold>
</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g005.tif"/>
</fig>
<table-wrap id="T6" position="float">
<label>Table&#xa0;6</label>
<caption>
<p>Percentage abundances (%) of bacterial phyla in the intestine of <italic>L. vannamei</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Phylum</th>
<th valign="top" align="center">BSFL0%</th>
<th valign="top" align="center">BSFL25%</th>
<th valign="top" align="center">BSFL50%</th>
<th valign="top" align="center">BSFL75%</th>
<th valign="top" align="center">BSFL100%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Proteobacteria</td>
<td valign="top" align="char" char="&#xb1;">88.95 &#xb1; 6.40<sup>a</sup>
</td>
<td valign="top" align="char" char="&#xb1;">64.71 &#xb1; 8.30<sup>ab</sup>
</td>
<td valign="top" align="char" char="&#xb1;">68.75 &#xb1; 13.84<sup>b</sup>
</td>
<td valign="top" align="char" char="&#xb1;">63.47 &#xb1; 3.26<sup>b</sup>
</td>
<td valign="top" align="char" char="&#xb1;">72.75 &#xb1; 0.83b</td>
</tr>
<tr>
<td valign="top" align="left">Bacteroidetes</td>
<td valign="top" align="char" char="&#xb1;">3.19 &#xb1; 0.62<sup>b</sup>
</td>
<td valign="top" align="char" char="&#xb1;">17.25 &#xb1; 1.79<sup>a</sup>
</td>
<td valign="top" align="char" char="&#xb1;">4.74 &#xb1; 1.24<sup>ab</sup>
</td>
<td valign="top" align="char" char="&#xb1;">14.34 &#xb1; 2.10<sup>a</sup>
</td>
<td valign="top" align="char" char="&#xb1;">9.58 &#xb1; 2.94<sup>ab</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Planctomycetes</td>
<td valign="top" align="char" char="&#xb1;">2.11 &#xb1; 0.69</td>
<td valign="top" align="char" char="&#xb1;">9.18 &#xb1; 3.83<sup>ab</sup>
</td>
<td valign="top" align="char" char="&#xb1;">5.25 &#xb1; 3.00<sup>ab</sup>
</td>
<td valign="top" align="char" char="&#xb1;">9.06 &#xb1; 4.05<sup>ab</sup>
</td>
<td valign="top" align="char" char="&#xb1;">11.94 &#xb1; 2.28<sup>a</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Firmicutes</td>
<td valign="top" align="char" char="&#xb1;">3.94 &#xb1; 1.45</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
</tr>
<tr>
<td valign="top" align="left">Verrucomicrobia</td>
<td valign="top" align="char" char="&#xb1;">1.1 &#xb1; 0.17<sup>b</sup>
</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="char" char="&#xb1;">8.85 &#xb1; 2.9<sup>a</sup>
</td>
<td valign="top" align="char" char="&#xb1;">2.42 &#xb1; 0.81<sup>b</sup>
</td>
</tr>
<tr>
<td valign="top" align="left">Actinobacteria</td>
<td valign="top" align="char" char="&#xb1;">1.98 &#xb1; 0.95</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="char" char="&#xb1;">1.23 &#xb1; 0.41</td>
<td valign="top" align="char" char="&#xb1;">1.43 &#xb1; 0.43</td>
</tr>
<tr>
<td valign="top" align="left">Others</td>
<td valign="top" align="char" char="&#xb1;">1.87 &#xb1; 0.87</td>
<td valign="top" align="char" char="&#xb1;">1.86 &#xb1; 0.35</td>
<td valign="top" align="char" char="&#xb1;">1.54 &#xb1; 0.42</td>
<td valign="top" align="char" char="&#xb1;">0.81 &#xb1; 0.27</td>
<td valign="top" align="char" char="&#xb1;">1.24 &#xb1; 0.4</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Values are presented as the mean &#xb1; S.E.M of three replicates (n = 3, if there is a mutation value, removed). Values in the same row with different superscripts are significantly different (<italic>P</italic> &lt; 0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Relative abundances of bacterial genera in the intestine of <italic>L. vannamei</italic> fed with diets having different levels of BSFL. The most dominant genera (&gt; 1% of the total sequences) are shown in the schematic individually, and the relative abundances of main genera is indicated in <xref ref-type="table" rid="T7">
<bold>Table&#xa0;7</bold>
</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g006.tif"/>
</fig>
<table-wrap id="T7" position="float">
<label>Table&#xa0;7</label>
<caption>
<p>Relative abundances (%) of bacterial genus in the intestine of <italic>L. vannamei</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Genus</th>
<th valign="top" align="center">BSFL0%</th>
<th valign="top" align="center">BSFL25%</th>
<th valign="top" align="center">BSFL50%</th>
<th valign="top" align="center">BSFL75%</th>
<th valign="top" align="center">BSFL100%</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<italic>Ruegeria</italic>
</td>
<td valign="top" align="char" char="&#xb1;">2.17 &#xb1; 1.92<italic>
<sup>b</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">21.97 &#xb1; 15.74<italic>
<sup>ab</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">9.65 &#xb1; 6.02<italic>
<sup>b</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">16.23 &#xb1; 2.75<italic>
<sup>ab</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">30.07 &#xb1; 3.35<italic>
<sup>a</sup>
</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Vibrio</italic>
</td>
<td valign="top" align="char" char="&#xb1;">20.55 &#xb1; 3.14<italic>
<sup>a</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">11.83 &#xb1; 8.61<italic>
<sup>ab</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">16.99 &#xb1; 6.54<italic>
<sup>ab</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">12.00 &#xb1; 5.26<italic>
<sup>ab</sup>
</italic>
</td>
<td valign="top" align="char" char="&#xb1;">5.00 &#xb1; 0.90<italic>
<sup>b</sup>
</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Shewanella</italic>
</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="char" char="&#xb1;">3.03 &#xb1; 0.84</td>
<td valign="top" align="char" char="&#xb1;">7.26 &#xb1; 4.74</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Motilimonas</italic>
</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="char" char="&#xb1;">7.83 &#xb1; 4.61</td>
<td valign="top" align="char" char="&#xb1;">3.04 &#xb1; 0.52</td>
<td valign="top" align="char" char="&#xb1;">3.25 &#xb1; 0.4</td>
<td valign="top" align="char" char="&#xb1;">4.63 &#xb1; 3.21</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Fusibacter</italic>
</td>
<td valign="top" align="char" char="&#xb1;">1.01 &#xb1; 0.41</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Ralstonia</italic>
</td>
<td valign="top" align="char" char="&#xb1;">23.98 &#xb1; 11.85</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Shimia</italic>
</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="char" char="&#xb1;">3.22 &#xb1; 1.58</td>
<td valign="top" align="char" char="&#xb1;">4.13 &#xb1; 2.98</td>
<td valign="top" align="char" char="&#xb1;">3.34 &#xb1; 1.06</td>
<td valign="top" align="char" char="&#xb1;">1.06 &#xb1; 0.37</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Pseudoalteromonas</italic>
</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">2.1 &#xb1; 0.66</td>
<td valign="top" align="char" char="&#xb1;">6.12 &#xb1; 2.46</td>
<td valign="top" align="char" char="&#xb1;">1.20 &#xb1; 0.46</td>
<td valign="top" align="char" char="&#xb1;">4.11 &#xb1; 3.94</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Donghicola</italic>
</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="center">&#x2014;</td>
<td valign="top" align="char" char="&#xb1;">8.38 &#xb1; 6.17</td>
<td valign="top" align="center">&#x2014;</td>
</tr>
<tr>
<td valign="top" align="left">Others</td>
<td valign="top" align="char" char="&#xb1;">16.56 &#xb1; 9.99</td>
<td valign="top" align="char" char="&#xb1;">18.63 &#xb1; 11.07</td>
<td valign="top" align="char" char="&#xb1;">23.54 &#xb1; 7.26</td>
<td valign="top" align="char" char="&#xb1;">32.05 &#xb1; 6.81</td>
<td valign="top" align="char" char="&#xb1;">34.42 &#xb1; 5.86</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Only the top 10 genera in relative abundances are shown, and the other genera are combined into others for display in the figure and table. Values are presented as the mean &#xb1; S.E.M of three replicates (n = 3, if there is a mutation value, removed). Values in the same row with different superscripts are significantly different (<italic>P</italic> &lt; 0.05).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>The statistical results were further supported by the LEfSe analysis, which showed significant differences in intestinal bacterial abundances between shrimps fed the diets containing fresh BSFL and those fed with commercial feeds (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). The results showed that the relative abundance of class Gammaproteobacteria and genus <italic>Ralstonia</italic> belonging to phylum Proteobacteria was significantly higher in the control group. Moreover, the significantly higher relative abundance of family Rubinisphaeraceae (Planctomycetes), order Planctomycetales (Planctomycetes), order Pirellulales (Planctomycetes), family Pirellulaceae (Planctomycetes), class Planctomycetacia (Planctomycetes), genus <italic>Motilimonas</italic> (Proteobacteria), family Psychromonadaceae (Proteobacteria), genus <italic>Ruegeria</italic> (Proteobacteria), order Flavobacteriales (Bacteroidetes), family Flavobacteriaceae (Bacteroidetes), class Bacteroidia (Bacteroidetes) was found in the fresh BSFL-containing groups.</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>The LDA effects size (LEfSe) analysis of bacterial taxa between the control and fresh BSFL-containing groups. <bold>(A)</bold> Bar chart displays LDA scores of the control and fresh BSFL-containing groups. The LDA scores represented the differencein relative abundance with exponent fold change of 10 between two treatments. Significant differences are defined as <italic>P &lt;</italic> 0.05 and LDA score &gt;0.04. <bold>(B)</bold> Cladogram displays significantly enriched bacterial taxa (from the phylum to the genus level).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-09-987363-g007.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<sec id="s4_1">
<title>The effects on immune enzyme activity of shrimp</title>
<p>The proper level of fresh BSFL can increase the immune enzyme activity of shrimp serum but led to a decrease in hepatopancreas immune enzyme activity. Among the non-specific immune indicators of <italic>L. vannamei</italic>, the activity of AKP, ACP, and T-NOS is closely related to the health status and immune capacity of the organism. Inducible nitric oxide synthase (iNOS) produces large amounts of NO to kill pathogens after being stressed by immune stimulants or various environmental stressors (<xref ref-type="bibr" rid="B7">Chakravortty and Hensel, 2003</xref>). In addition, both ACP and AKP are marker enzymes for lysosomal enzymes, which are important for the immune system of crustaceans (<xref ref-type="bibr" rid="B49">Sgeirsson et&#xa0;al., 1995</xref>; <xref ref-type="bibr" rid="B63">Xiao et&#xa0;al., 2018</xref>). Higher activities of T-NOS, AKP, and ACP were detected in the shrimp serum when 25% commercial feed was replaced by fresh BSFL. This was following the previous study (<xref ref-type="bibr" rid="B63">Xiao et&#xa0;al., 2018</xref>), which lysozyme and phagocytic percentages in the serum of <italic>P. fulvidraco</italic> were increased by the appropriate level of BSFL meal supplemented in the diet. Furthermore, the defatted insect meal (<italic>T. Molitor</italic>) was added to the diet also increased the phenol oxidase activity of <italic>L. vannamei</italic> (<xref ref-type="bibr" rid="B44">Rios et&#xa0;al., 2019</xref>). We suggest that chitin in BSFL may be responsible for the improved immune enzyme activity of <italic>L. vannamei</italic>. Many studies have also shown that chitin and its derivatives could enhance the immune response of aquatic animals (<xref ref-type="bibr" rid="B26">Khoushab and Yamabhai, 2010</xref>; <xref ref-type="bibr" rid="B40">Ngo and Kim, 2014</xref>). However, fresh BSFL also has negative effects: elevated fat level and reduced protein level in shrimp diets with the increase of fresh BSFL replacement level in the diet. Some research indicated that feeding diets with excessive fat levels have a negative impact on the immune system of shrimp (<xref ref-type="bibr" rid="B66">Zhang et&#xa0;al., 2013</xref>). In addition, the protein level in the diet is also closely related to the immune capacity of aquatic animals (<xref ref-type="bibr" rid="B11">Council, 2011</xref>). Therefore, the replacement rate of fresh BSFL is limited by their nutrition composition.</p>
<p>Interestingly, we may break this limitation by changing the culture substrate of fresh BSFL. The fresh BSFL is like a capsule which nutrition composition is closely related to its culture substrate (<xref ref-type="bibr" rid="B51">Shumo et&#xa0;al., 2019</xref>). <xref ref-type="bibr" rid="B37">Meneguz et&#xa0;al. (2018)</xref> found that the protein content of BSFL was significantly increased by using agro-industrial by-products instead of organic waste. Fresh BSFL with a lower fat level and higher protein are obtained by adjusting the culture substrate. Furthermore, studies have shown that BSFL are deficient in essential amino acids and unbalanced EAA/NEAA (<xref ref-type="bibr" rid="B12">Cummins et&#xa0;al., 2017</xref>), and this disadvantage cannot be improved by changing the culture substrate of the BSFL. The amino acid content of larvae changed in a small range when BSFL were raised on different rearing substrates, especially when compared with the significant difference in amino acid composition of the culture substrates (<xref ref-type="bibr" rid="B55">Spranghers et&#xa0;al., 2017</xref>). This also suggests that if fresh BSFL are to be used in shrimp culture, it is better to supplement the diet with additives, such as the addition of free amino acids to improve the amino acid balance of the diet.</p>
</sec>
<sec id="s4_2">
<title>Water quality of shrimp tanks</title>
<p>Fresh BSFL can improve water quality and reduce water change, thus decreasing the chance of external disease invasion. Water quality has been observed to be influenced by feeding activities, which may affect the growth performance of aquatic animals. In this study, continuous monitoring of water quality in each group showed that fresh BSFL replacement level was negatively correlated with ammonia nitrogen and nitrate nitrogen and positively correlated with pH. This phenomenon may be explained by the deterioration of water quality due to feed losses (<xref ref-type="bibr" rid="B8">Cha et&#xa0;al., 2008</xref>). Previous studies indicated that only 20%&#x2013;30% of feed nutrients are retained in the shrimp culture and the remaining 70%&#x2013;80% are accumulated in the aquatic system, which can lead to eutrophication and water quality deterioration (<xref ref-type="bibr" rid="B42">Paez-Osuna, 2001</xref>). Furthermore, the residues of fresh BSFL are mainly chitin exoskeleton, which is more difficult to dissolve and easier to be removed by siphonage than the commercial feeds. Excessive pollutants in the culture environments (such as ammonia, nitrite, and COD derived from soluble excretions and organic decomposition) can lead to anoxic conditions which are harmful to benthic biota owing to the oxygen-consuming decomposition (<xref ref-type="bibr" rid="B32">Li et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B62">Wang et&#xa0;al., 2016</xref>). Stress in shrimp can be caused by the overload of toxic nitrogen metabolites, which can also reduce immune capacity leading to susceptibility to disease (<xref ref-type="bibr" rid="B25">Kautsky et&#xa0;al., 2000</xref>). In addition, the ammoniacal nitrogen was converted to microbial biomass by heterotrophic bacteria, along with the production of CO<sub>2</sub> (<xref ref-type="bibr" rid="B16">Ebeling et&#xa0;al., 2006</xref>), resulting in a decrease in the pH of aquaculture water environments. Previous studies have shown that the decrease in pH induces an increase of the oxygen consumption rate of shrimp (<xref ref-type="bibr" rid="B9">Chen and Lin, 1995</xref>). Large water exchange strategies are often adopted to maintain water quality in intensive and semi-intensive shrimp farming when water quality deteriorates, which increases the risk of pathogen invasion and transmission, energy consumption, and labor cost. Therefore, fresh BSFL are suitable for practical application in high-density shrimp culture.</p>
</sec>
<sec id="s4_3">
<title>Microbiota analysis of shrimp intestine</title>
<p>Generally, the high intestinal microbial richness and diversity are considered a positive phenomenon because they usually represent the better health status of the host (<xref ref-type="bibr" rid="B48">Sekirov et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B2">Apper et&#xa0;al., 2016</xref>). In this experiment, the richness and diversity of intestinal microbiota of <italic>L. vannamei</italic> can be enhanced when commercial feeds were replaced by fresh BSFL. This was in agreement with the findings of most studies, which indicate that the shrimp community is plastic and can be manipulated by the addition of insects to the diets. Specifically, <xref ref-type="bibr" rid="B18">Foysal et&#xa0;al. (2019)</xref> found that the diversity and richness of intestinal microbiota in marron (<italic>C. cainii</italic>) was positively correlated with dietary BSFL meal level. In addition, the richness and diversity of intestinal microbiota in rainbow trout were significantly improved after FM was partially replaced by BSFL meal in the diets (<xref ref-type="bibr" rid="B57">Terova et&#xa0;al., 2019</xref>). In addition, the composition of the dominant intestinal microbiota of <italic>L. vannamei</italic> was also significantly affected by the diet containing fresh BSFL. Previous studies showed that the intestinal microbiota of <italic>L. vannamei</italic> was dominated by Proteobacteria and Bacteroidetes, which constitute the core flora, regardless of the diet administered (<xref ref-type="bibr" rid="B64">Yuan et&#xa0;al., 2019</xref>). However, chronic intestinal microecological disorders or intestinal inflammation was often caused by the excessive relative abundance of Proteobacteria (<xref ref-type="bibr" rid="B38">Mukhopadhya et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B50">Shin et&#xa0;al., 2015</xref>). In addition, intestinal inflammation is usually accompanied by the increase of Proteobacteria and by the decrease of Bacteroidetes. We suggest that chitin in BSFL may be a key factor in improving the intestinal health of shrimp. It was known that the insects contain a large amount of chitin which is a mucopolysaccharide polymer hardly digested by many aquatic animal species. However, many studies found chitin added to the diet of aquatic animals can improve the diversity of intestinal microbiota and inhibit the growth of pathogens in the intestine (<xref ref-type="bibr" rid="B67">Zhou et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B24">Karlsen et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B58">Udayangani et&#xa0;al., 2017</xref>). In addition, fresh BSFL are also rich in lauric acid, a medium-chain fatty acid that inhibits Gram-positive bacteria and plays a role in regulating the composition of intestinal bacteria (<xref ref-type="bibr" rid="B53">Sk&#x159;ivanov&#xe1; et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B52">Sk&#x159;ivanov&#xe1; et&#xa0;al., 2006</xref>).</p>
<p>However, feeding fresh BSFL inhibited the relative abundance of the Firmicutes. In this experiment, only the control group was characterized by a high abundance of Firmicutes. This was inconsistent with previous findings in rainbow trout (<italic>O. mykiss</italic>), a higher relative abundance of Firmicutes was found in the insect-containing groups (<xref ref-type="bibr" rid="B57">Terova et&#xa0;al., 2019</xref>). <xref ref-type="bibr" rid="B5">Bruni et&#xa0;al. (2018)</xref> found that Firmicutes were only detected in the fecal samples of <italic>O. mykiss</italic> fed with BSFL. Firmicutes include different lactic acid bacteria, which are generally considered to be beneficial microbes. Firmicutes play an important role in breaking down indigestible carbohydrates such as starches and fibers, thereby contributing to making more efficient use of energy in diets (<xref ref-type="bibr" rid="B54">Smriga et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B6">Catal&#xe1;n et&#xa0;al., 2018</xref>). Thus, feeding fresh BSFL has a negative effect on the digestibility of shrimp. It was analyzed that the relative abundance of Firmicutes in the intestine of shrimp may be limited by two factors. Firstly, the plant component of the diet was typically associated with higher Firmicutes found in several studies (<xref ref-type="bibr" rid="B21">Heikkinen et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B13">Desai et&#xa0;al., 2012</xref>). The decrease in the relative abundance of Firmicutes may be caused by a reduction in the plant component of the fresh BSFL feeding regime. Secondly, the composition of the intestinal microbiota of aquatic animals was also modulated by the insect-rearing substrates. The highest inhibitory activities against Gram-positive bacteria were found in larvae reared on chitin, cellulose, bacteria, and plant oil (<xref ref-type="bibr" rid="B61">Vogel et&#xa0;al., 2018</xref>). The wheat bran was used as a rearing substrate for BSFL in this study, which may also explain the lower relative abundance of Firmicutes as Gram-positive bacteria in the intestine of shrimp. These results also remind us that additional probiotics belonging to Firmicutes should be added to the diet to improve the digestibility of shrimp when commercial feeds are replaced by fresh BSFL, such as <italic>Streptococcus</italic>, <italic>Lactobacillus</italic>, and <italic>Carnobacterium</italic>.</p>
<p>At the level of genus, fresh BSFL can promote the relative abundance of probiotic bacteria while suppressing the relative abundance of <italic>Vibrio</italic>. Some unique probiotics were only found in the fresh BSFL-containing groups, such as <italic>Motilimonas</italic>, <italic>Shimia</italic>, <italic>Pseudoalteromonas</italic>, and <italic>Shewanella</italic>. These bacteria designated as probiotics had been reported to be positively correlated with diets containing insects in general (<xref ref-type="bibr" rid="B57">Terova et&#xa0;al., 2019</xref>). <italic>Pseudoalteromonas</italic> can produce a variety of extracellular active substances with antimicrobial, bacteriolytic, galactose decomposition, cellulose degradation, and other functions, so it has high utilization potential and important ecological implications (<xref ref-type="bibr" rid="B23">Holmstr&#xf6;m and Kjelleberg, 1999</xref>). <italic>Shewanella</italic> as the dominant bacteria was found in the high fresh BSFL replacement groups, and some studies have shown that <italic>Shewanella</italic> contributes to the nutrition absorption of rainbow trout (<xref ref-type="bibr" rid="B27">Koziska and P&#xea;kala, 2004</xref>). In addition, the prolific growth of <italic>Vibrio</italic> can lead to the whole microecological balance being destroyed. This ultimately results in the growth and immune capacity being inhibited and even death burst in aquatic animals (<xref ref-type="bibr" rid="B56">Sung et&#xa0;al., 2001</xref>). In the present experiment, the fresh BSFL-containing groups had better water quality, which may have suppressed the relative abundance of <italic>Vibrio</italic>. Beyond that, the proliferation of beneficial bacteria can be stimulated by chitin, which can effectively compete with <italic>Vibrio</italic>.</p>
<p>In addition, the relative abundances of microbial taxa across the control group and fresh BSFL-containing groups in this trial were contrasted using the LEfSe analysis, which revealed that the significantly enriched probiotic bacteria again validated the positive effect of feeding fresh BSFL on the shrimp intestinal microbiota. Interestingly, the emergence of Planctomycetes as the dominant bacteria in the intestine of shrimp has not been reported in previous studies, but our results showed a significant increase in the relative abundance of Planctomycetes in the fresh BSFL-containing groups. Planctomycetes are widely found in natural systems such as seawater, freshwater, soil, and other artificial systems such as wastewater. They play an important role in farming wastewater nitrogen removal systems by generating nitrogen (N<sub>2</sub>) from total ammonia nitrogen (NH<sub>4</sub>
<sup>+</sup>) and nitrite (NO<sub>2</sub>&#x2212;N). Thus, Planctomycetes are considered eco-friendly bacteria (<xref ref-type="bibr" rid="B28">Kuypers et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B60">Van Teeseling et&#xa0;al., 2015</xref>). We suggested that the elevated relative abundance of the Planctomycetes in the shrimp intestine may be related to the change in the aquatic environment. Some studies have shown that the intestinal microbiota of aquatic animals interacts with the microflora in the water environment. In addition, the positive effect of fresh insects on water quality might benefit the enrichment of the Planctomycetes in the shrimp intestine. However, this hypothesis requires further research.</p>
</sec>
</sec>
<sec id="s5">
<title>Conclusions</title>
<p>This study demonstrated that replacing commercial feeds by fresh black soldier fly larvae in the diets at a proper rate had positive effects on immune and digestive system in Pacific white shrimp <italic>L. vannamei</italic> with an improvement on water quality during culturing experiment. The decreased immune enzyme activities in hepatopancreas was found in groups with BSFL replacement rate above 50%, suggesting an optimal proportion of BSFL replacement should be under 50%. In the coming work, the replacement level of commercial feeds with fresh BSFL could be improved by changing the culture substrates for the insects, as well as a dietary supplementation with nutritional ingredients or probiotics, which can contribute to sustainable shrimp farming by reducing FM consumption.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: <uri xlink:href="https://www.ncbi.nlm.nih.gov/-PRJNA859541">https://www.ncbi.nlm.nih.gov/-PRJNA859541</uri>.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>YH designed and performed the experiments with other teammates with the help of YJ. YH drafted the manuscript. QY and AW took samples. SW and NZ measured the activity of immune enzymes. YC and AW performed the statistical analysis of the original data. SH and YM revised the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s8" sec-type="acknowledgement">
<title>Acknowledgments</title>
<p>We are sincerely grateful to thank Prof. Jianguang Qin, Prof. Xiaodong Li and Associate Prof. Rantao Zuo for their pieces of advice and comments on this manuscript. This work was financially supported by the National Key R&amp;D Program of China (Grant No. 2020YFD0900202 and 2018YFD0900400), Project of Selecting Best Candidates to Lead Key Researches in Liaoning 2021JH1/10400040 and Grant for marine economic development from Liaoning provincial department of natural resources (202233).</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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