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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2019.00865</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Microbial Ecotoxicology of Marine Plastic Debris: A Review on Colonization and Biodegradation by the &#x201C;Plastisphere&#x201D;</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Jacquin</surname> <given-names>Justine</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/613553/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Cheng</surname> <given-names>Jingguang</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Odobel</surname> <given-names>Charl&#x00E8;ne</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Pandin</surname> <given-names>Caroline</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Conan</surname> <given-names>Pascal</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/204475/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Pujo-Pay</surname> <given-names>Mireille</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Barbe</surname> <given-names>Val&#x00E9;rie</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Meistertzheim</surname> <given-names>Anne-Leila</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/459422/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Ghiglione</surname> <given-names>Jean-Fran&#x00E7;ois</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/204627/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>UMR 7621, CNRS, Laboratoire d&#x2019;Oc&#x00E9;anographie Microbienne, Observatoire Oc&#x00E9;anologique de Banyuls-sur-Mer, Sorbonne Universit&#x00E9;</institution>, <addr-line>Banyuls-sur-Mer</addr-line>, <country>France</country></aff>
<aff id="aff2"><sup>2</sup><institution>G&#x00E9;nomique M&#x00E9;tabolique, Genoscope, Institut de Biologie Fran&#x00E7;ois Jacob, Commissariat &#x00E1; I&#x2019;&#x00C9;nergie Atomique (CEA), CNRS, Universit&#x00E9; Evry, Universit&#x00E9; Paris-Saclay</institution>, <addr-line>&#x00C9;vry</addr-line>, <country>France</country></aff>
<aff id="aff3"><sup>3</sup><institution>Plastic@Sea, Observatoire Oc&#x00E9;anographique de Banyuls-sur-Mer</institution>, <addr-line>Banyuls-sur-Mer</addr-line>, <country>France</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Michail M. Yakimov, Italian National Research Council (CNR), Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Irene Wagner-Doebler, Helmholtz Center for Infection Research (HZ), Germany; Edoardo Puglisi, University Cattolica del Sacro Cuore, Italy</p></fn>
<corresp id="c001">&#x002A;Correspondence: Jean-Fran&#x00E7;ois Ghiglione, <email>ghiglione@obs-banyuls.fr</email></corresp>
<fn fn-type="other" id="fn002"><p>This article was submitted to Microbiotechnology, Ecotoxicology and Bioremediation, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>25</day>
<month>04</month>
<year>2019</year>
</pub-date>
<pub-date pub-type="collection">
<year>2019</year>
</pub-date>
<volume>10</volume>
<elocation-id>865</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>09</month>
<year>2018</year>
</date>
<date date-type="accepted">
<day>04</day>
<month>04</month>
<year>2019</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2019 Jacquin, Cheng, Odobel, Pandin, Conan, Pujo-Pay, Barbe, Meistertzheim and Ghiglione.</copyright-statement>
<copyright-year>2019</copyright-year>
<copyright-holder>Jacquin, Cheng, Odobel, Pandin, Conan, Pujo-Pay, Barbe, Meistertzheim and Ghiglione</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Over the last decades, it has become clear that plastic pollution presents a global societal and environmental challenge given its increasing presence in the oceans. A growing literature has focused on the microbial life growing on the surfaces of these pollutants called the &#x201C;plastisphere,&#x201D; but the general concepts of microbial ecotoxicology have only rarely been integrated. Microbial ecotoxicology deals with (i) the impact of pollutants on microbial communities and inversely (ii) how much microbes can influence their biodegradation. The goal of this review is to enlighten the growing literature of the last 15 years on microbial ecotoxicology related to plastic pollution in the oceans. First, we focus on the impact of plastic on marine microbial life and on the various functions it ensures in the ecosystems. In this part, we also discuss the driving factors influencing biofilm development on plastic surfaces and the potential role of plastic debris as vector for dispersal of harmful pathogen species. Second, we give a critical view of the extent to which marine microorganisms can participate in the decomposition of plastic in the oceans and of the relevance of current standard tests for plastic biodegradability at sea. We highlight some examples of metabolic pathways of polymer biodegradation. We conclude with several questions regarding gaps in current knowledge of plastic biodegradation by marine microorganisms and the identification of possible directions for future research.</p>
</abstract>
<kwd-group>
<kwd>bacteria</kwd>
<kwd>marine plastics debris</kwd>
<kwd>colonization</kwd>
<kwd>biodegradation</kwd>
<kwd>metabolic pathways</kwd>
</kwd-group>
<counts>
<fig-count count="4"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="147"/>
<page-count count="16"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec><title>Introduction</title>
<p>The amount of land-based plastic debris entering the ocean is estimated at 4.8 to 12.7 million tons per years (<xref ref-type="bibr" rid="B60">Jambeck et al., 2015</xref>). It is so important that plastic is regarded as a marker of the Anthropocene (<xref ref-type="bibr" rid="B24">Duis and Coors, 2016</xref>; <xref ref-type="bibr" rid="B146">Zalasiewicz et al., 2016</xref>). A growing body of research has investigated plastic distribution (<xref ref-type="bibr" rid="B139">Willis et al., 2017</xref>; <xref ref-type="bibr" rid="B140">Worm et al., 2017</xref>) and toxicity for marine fauna (<xref ref-type="bibr" rid="B9">Bakir et al., 2014</xref>; <xref ref-type="bibr" rid="B36">Gewert et al., 2015</xref>). A comparatively smaller but growing literature has been devoted to the microbial ecotoxicology of marine plastic debris, i.e. (1) the impact of plastic on marine microbial life together with the various ecosystem services that marine microbial life ensures and inversely, (2) the role of microorganisms in the degradation of ocean plastic (<xref ref-type="bibr" rid="B38">Ghiglione et al., 2014</xref>, <xref ref-type="bibr" rid="B37">2016</xref>). Both aspects will be successively explored by this review, which covers the last 15 years of literature.</p>
<p>The investigation of microorganisms colonizing plastic surfaces using modern techniques of massive DNA sequencing (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>) was introduced only recently. The authors introduced the world &#x201C;plastisphere&#x201D; to describe the microbial life growing on these surfaces. They also detected members of the potentially pathogenic genus <italic>Vibrio</italic>, which may be dispersed over long distances by floating persistent plastics. Since then, several studies investigated various marine environments, such as the North Pacific Gyre (<xref ref-type="bibr" rid="B23">Debroas et al., 2017</xref>) or the Mediterranean Sea (<xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>). In parallel, a growing literature described the first steps of colonization of new plastic until the formation of a mature biofilm (<xref ref-type="bibr" rid="B83">Lobelle and Cunliffe, 2011</xref>; <xref ref-type="bibr" rid="B102">Oberbeckmann et al., 2015</xref>; <xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>).</p>
<p>Such knowledge is of great interest to better understand the impact of plastic on marine microbial life and ecosystem functions. Only one study so far used shotgun metagenomics, showing that plastic-inhabiting microbes present an enriched gene repertoire compared to microbes living in the surrounding waters (<xref ref-type="bibr" rid="B13">Bryant et al., 2016</xref>). In this review, we argue that current knowledge is insufficient to draw a clear picture of the impact of plastic on marine microbial life and ecosystem functions, and we propose several directions for further studies in this field (see section &#x201C;Microorganisms Colonizing Plastic at Sea&#x201D;).</p>
<p>The role of microbes on plastic degradation in the ocean is a second subject of concern. Very recently, an excellent comprehensive review concluded that &#x201C;current international standards and regional test methods are insufficient in their ability to realistically predict the biodegradability of carrier bags in marine environment, due to several shortcomings in experimental procedures and a paucity of information in the scientific literature&#x201D; (<xref ref-type="bibr" rid="B45">Harrison et al., 2018</xref>). The capability of microorganisms to biodegrade plastic was reported for numerous bacterial strains (<xref ref-type="bibr" rid="B76">Krueger et al., 2015</xref>). Fungi also have the capability to biodegrade plastics, but most of the studies were conducted in terrestrial conditions (<xref ref-type="bibr" rid="B16">Cosgrove et al., 2007</xref>; <xref ref-type="bibr" rid="B73">Koitabashi et al., 2012</xref>; <xref ref-type="bibr" rid="B35">Gajendiran et al., 2016</xref>; <xref ref-type="bibr" rid="B86">Magnin et al., 2018</xref>) whereas very few studies so far exist in marine conditions (<xref ref-type="bibr" rid="B41">Gonda et al., 2000</xref>; <xref ref-type="bibr" rid="B112">Pramila and Ramesh, 2011</xref>). Moreover, most of these studies were based on the selection and testing of single strains in laboratory conditions, which is very far from environmental conditions. In this review, we underscore the knowledge gaps on plastic biodegradation by marine microorganisms and we attempt to identify possible directions for future research in this area (see section &#x201C;How Much Can Microorganisms Participate in Plastic Degradation at Sea?&#x201D;).</p>
</sec>
<sec><title>Microorganisms Colonizing Plastic at Sea</title>
<sec><title>A New Niche for Marine Microorganisms</title>
<p>It was not until recently that the first work using modern techniques of massive DNA sequencing provided a detailed picture of the microbial life on plastic and introduced the term &#x201C;plastisphere&#x201D; (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>). Bacteria, Archaea, Fungi and microbial Eukaryotes were detected in several studies, starting from plastics sampled at sea or from new plastics experimentally incubated in marine conditions (<xref ref-type="table" rid="T1">Table 1</xref>). Plastic debris are mainly composed of polyethylene (PE) at sea surface, followed by polypropylene (PP) and polystyrene (PS) (<xref ref-type="bibr" rid="B8">Auta et al., 2017</xref>). Whatever the polymer type, recent studies emphasized the difference between the bacteria living on plastics and the bacteria living in free-living state (<xref ref-type="bibr" rid="B23">Debroas et al., 2017</xref>) or on organic particles in the surrounding seawater (<xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>; <xref ref-type="bibr" rid="B100">Oberbeckmann et al., 2018</xref>). Similar observations have been made for fungal communities (<xref ref-type="bibr" rid="B69">Kettner et al., 2017</xref>).</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>List of recent studies using molecular techniques to evaluate the biodiversity of the plastisphere in different geographic regions, for plastic samples taken at sea or incubated in seawater conditions for the purpose of the studies.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Studied area</th>
<th valign="top" align="left">Sample type</th>
<th valign="top" align="left">Method</th>
<th valign="top" align="left">Gene target</th>
<th valign="top" align="left">Target</th>
<th valign="top" align="left">References</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">North Pacific subtropical Gyre</td>
<td valign="top" align="left">Sampling at sea surface</td>
<td valign="top" align="left">Metagenomic sequencing</td>
<td valign="top" align="left"></td>
<td valign="top" align="left">Bacteria and Eukaryote</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B13">Bryant et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">Baltic Sea</td>
<td valign="top" align="left">Incubation in seawater</td>
<td valign="top" align="left">V4 18S rRNA sequencing</td>
<td valign="top" align="left">565-981</td>
<td valign="top" align="left">Microbial Eukaryote, Fungi</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B69">Kettner et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left">Estuary, Baltic Sea</td>
<td valign="top" align="left">Incubation in seawater</td>
<td valign="top" align="left">V4 16S rRNA sequencing</td>
<td valign="top" align="left">515-806</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B100">Oberbeckmann et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">North Sea</td>
<td valign="top" align="left">Incubation in seawater</td>
<td valign="top" align="left">V4 16S rRNA sequencing</td>
<td valign="top" align="left">515-806</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B103">Oberbeckmann et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left">V9 18S rRNA sequencing</td>
<td valign="top" align="left">1391-1795</td>
<td valign="top" align="left">Microbial Eukaryote, Fungi</td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">North Sea</td>
<td valign="top" align="left">Sampling at sea surface- Incubation in seawater</td>
<td valign="top" align="left">DGGE 16S rRNA and sequencing</td>
<td valign="top" align="left">341-534</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B101">Oberbeckmann et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left">North Sea</td>
<td valign="top" align="left">Incubation in seawater and sediment</td>
<td valign="top" align="left">V3-V4 16S rRNA sequencing</td>
<td valign="top" align="left">341-785</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B21">De Tender et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left">rDNA-ITS2 sequencing</td>
<td valign="top" align="left"></td>
<td valign="top" align="left">Fungi</td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">North Atlantic subtropical gyre</td>
<td valign="top" align="left">Sampling at sea surface</td>
<td valign="top" align="left">V4 16S rRNA sequencing</td>
<td valign="top" align="left">515-806</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B23">Debroas et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left">V7 18S rRNA sequencing</td>
<td valign="top" align="left">960-1438</td>
<td valign="top" align="left">Eukaryote</td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">North Atlantic</td>
<td valign="top" align="left">Sampling at sea surface</td>
<td valign="top" align="left">V4-V6 16S rRNA sequencing</td>
<td valign="top" align="left">518-1046</td>
<td valign="top" align="left">Bacteria</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"></td>
<td valign="top" align="left">V9 16S rRNA sequencing</td>
<td valign="top" align="left">1380-1510</td>
<td valign="top" align="left">Microbial Eukaryote</td>
<td valign="top" align="left"></td>
</tr>
<tr>
<td valign="top" align="left">Mediterranean Sea</td>
<td valign="top" align="left">Sampling at sea surface</td>
<td valign="top" align="left">V3-V5 16S rRNA sequencing</td>
<td valign="top" align="left">515-926</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref></td>
</tr>
<tr>
<td valign="top" align="left">Mediterranean Sea</td>
<td valign="top" align="left">Incubation in seawater</td>
<td valign="top" align="left">V3-V5 16S rRNA sequencing</td>
<td valign="top" align="left">515-926</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B27">Dussud et al., 2018b</xref></td>
</tr>
<tr>
<td valign="top" align="left">Mediterranean Sea</td>
<td valign="top" align="left">Incubation in seawater</td>
<td valign="top" align="left">V3-V5 16S rRNA sequencing</td>
<td valign="top" align="left">515-926</td>
<td valign="top" align="left">Bacteria and Archaea</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B12">Briand et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left">Arabian Sea</td>
<td valign="top" align="left">Incubation in seawater</td>
<td valign="top" align="left">V4 16S rRNA sequencing</td>
<td valign="top" align="left">ND</td>
<td valign="top" align="left">Bacteria</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B97">Muthukrishnan et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">Estuary, North Sea</td>
<td valign="top" align="left">Incubation in marine sediment</td>
<td valign="top" align="left">16S rRNA cloning and sequencing</td>
<td valign="top" align="left">27-1492</td>
<td valign="top" align="left">Bacteria</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B47">Harrison et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left">Estuary, East China Sea</td>
<td valign="top" align="left">Sampling at sediment surface</td>
<td valign="top" align="left">V3-V4 16S rRNA sequencing</td>
<td valign="top" align="left">319-806</td>
<td valign="top" align="left">Bacteria</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B62">Jiang et al., 2018</xref></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>The PCR-amplified regions and the corresponding targeted organisms are indicated. ND, Non-described in the publication.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>Another aspect that received much less attention is the plastisphere living in the water column other than the surface layer. Because of methodological constraints, most of the studies so far have been limited to sampling surface seawater using manta trawls, which represents less than 1% of the global load of plastic in the open ocean (<xref ref-type="bibr" rid="B17">C&#x00F3;zar et al., 2014</xref>). Only certain types of plastics made of PE and PP with high surface-to-volume ratios, such as rigid plastics and bundled fishing nets and ropes, have the capability to remain for a very long time at the surface of the oceans (<xref ref-type="bibr" rid="B79">Lebreton et al., 2018</xref>). Most other buoyant plastic such as films or smaller pieces, tend to sink to the sediment owing to biofouling (<xref ref-type="bibr" rid="B33">Fazey and Ryan, 2016</xref>; <xref ref-type="bibr" rid="B64">Kalogerakis et al., 2017</xref>). Very limited information is available concerning the composition of microbial communities on plastic items sampled from the seafloor (<xref ref-type="bibr" rid="B22">De Tender et al., 2015</xref>). If photoautotrophic bacteria such as the cyanobacteria of the genera <italic>Phormidium</italic> and <italic>Rivularia</italic> dominate the sub-surface plastisphere communities (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>; <xref ref-type="bibr" rid="B13">Bryant et al., 2016</xref>; <xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>), the core microbiome of the seafloor and sub-surface plastisphere seems to share some taxa: Bacteroidetes (<italic>Flavobacteriaceae</italic>) and Proteobacteria (<italic>Rhodobacteraceae</italic> and <italic>Alcanivoracaceae</italic>) (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>; <xref ref-type="bibr" rid="B13">Bryant et al., 2016</xref>; <xref ref-type="bibr" rid="B21">De Tender et al., 2017</xref>; <xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>).</p>
</sec>
<sec><title>Successive Colonization Stages of New Plastics Incubated in Marine Conditions</title>
<p>In parallel to studies on plastic directly sampled at sea, other studies focused on the successive colonization steps of new plastics incubated in marine conditions (<xref ref-type="table" rid="T1">Table 1</xref>). At sea, plastics are rapidly covered by the &#x201C;conditioning film&#x201D; made of inorganic and organic matter, which is then rapidly colonized by bacteria (mainly <italic>Gammaproteobacteria</italic> and <italic>Alphaproteobacteria</italic>) (<xref ref-type="bibr" rid="B102">Oberbeckmann et al., 2015</xref>). With time, members of Bacteroidetes become increasingly abundant (<xref ref-type="bibr" rid="B81">Lee et al., 2008</xref>). Hydrophobicity and other substratum properties (crystallinity and crystal structure, roughness, glass transition temperature, melting temperature, modulus of elasticity) may play a role in the selection of bacterial community in the early stages of colonization (<xref ref-type="bibr" rid="B110">Pompilio et al., 2008</xref>), but probably in a lesser extent when the biofilm becomes mature (<xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>). The successive growing and maturation phases of biofilm formation, already described for other surfaces such as glass, acryl, steel or rocks and algae (<xref ref-type="bibr" rid="B116">Salta et al., 2013</xref>), were also observed for plastics of different compositions (<xref ref-type="bibr" rid="B102">Oberbeckmann et al., 2015</xref>). Biofilm developments were followed during several weeks in seawater on PE-based plastic bags (<xref ref-type="bibr" rid="B83">Lobelle and Cunliffe, 2011</xref>), polyethylene terephthalate (PET)-based plastic bottles (<xref ref-type="bibr" rid="B101">Oberbeckmann et al., 2014</xref>), polyvinyl chloride (PVC) (<xref ref-type="bibr" rid="B18">Dang et al., 2008</xref>), or polystyrene (PS) coupons (<xref ref-type="bibr" rid="B12">Briand et al., 2012</xref>). PE-based plastics were also rapidly colonized by microorganisms in marine sediments (<xref ref-type="bibr" rid="B47">Harrison et al., 2014</xref>). Clear differences in bacterial abundance, diversity and activity were found between non-biodegradable and biodegradable plastics (<xref ref-type="bibr" rid="B28">Eich et al., 2015</xref>; <xref ref-type="bibr" rid="B27">Dussud et al., 2018b</xref>). Higher colonization by active and specific bacteria were found after six weeks on poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) and pre-oxidized PE-based oxodegradable polymers (OXO) in comparison to non-biodegradable PE polymers (<xref ref-type="bibr" rid="B28">Eich et al., 2015</xref>; <xref ref-type="bibr" rid="B27">Dussud et al., 2018b</xref>). Longer-term studies carried out over a 6-month to one year period also showed differences in biofilm formation and maturation according to the polymer type, i.e. PE, PP, PET, or polycarbonate (PC) (<xref ref-type="bibr" rid="B138">Webb et al., 2009</xref>; <xref ref-type="bibr" rid="B21">De Tender et al., 2017</xref>). Not only bacteria but also fungi were shown to form biofilms on plastic surfaces (<xref ref-type="bibr" rid="B112">Pramila and Ramesh, 2011</xref>), mainly dominated by Chytridiomycota, Cryptomycota (<xref ref-type="bibr" rid="B69">Kettner et al., 2017</xref>) and Ascomycota (<xref ref-type="bibr" rid="B103">Oberbeckmann et al., 2016</xref>; <xref ref-type="bibr" rid="B21">De Tender et al., 2017</xref>; <xref ref-type="bibr" rid="B69">Kettner et al., 2017</xref>).</p>
</sec>
<sec><title>Potential Impact of Plastic on the Microbial Role in Regulation of Biogeochemical Cycles</title>
<p>The quantity of plastic in the oceans can no longer be considered as a limited ecological problem, since small pieces of plastic called &#x201C;microplastics&#x201D; (&#x003C;5 mm) found at sea could cover 4.2 million km<sup>2</sup> of the sea surface (<xref ref-type="bibr" rid="B15">Charette and Smith, 2010</xref>; <xref ref-type="bibr" rid="B49">Hidalgo-Ruz et al., 2012</xref>; <xref ref-type="bibr" rid="B29">Eriksen et al., 2014</xref>). Marine microorganisms that compose the plastisphere are known to play a key role in the biogeochemical cycles in the oceans (<xref ref-type="bibr" rid="B109">Pomeroy et al., 2007</xref>). One-half of oceanic primary production on average is channeled <italic>via</italic> heterotrophic bacterioplankton into the microbial loop, thus contributing significantly to food web structure and carbon biogeochemical cycling in the ocean (<xref ref-type="bibr" rid="B34">Fenchel, 2008</xref>; <xref ref-type="fig" rid="F1">Figure 1</xref>). Only one recent study compared the heterotrophic production of bacteria living on plastic and in seawater. Heterotrophic bacteria living on plastics were particularly active, the cell-specific activity measured by <sup>3</sup>H-leucine incorporation into proteins being 43- to 88-fold higher than that of the free-living fraction (<xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>). Unfortunately, these results were obtained in the frame of a study on colonization of new plastics incubated at sea for a relatively short period (45 days). Similar methodologies applied to plastics that had spent several years at sea would be necessary to evaluate how much the large amount of plastic and the accompanying plastisphere influence the biogeochemical carbon cycle in the oceans.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Illustration of the potential impact of plastic in the regulatory role of carbon and nutrient cycles played by bacteria <italic>via</italic> the microbial loop. Dissolve (DOM) and particulate (POM) organic matter originated from the linear trophic chain is returned to higher trophic levels <italic>via</italic> its incorporation in bacterial biomass.</p></caption>
<graphic xlink:href="fmicb-10-00865-g001.tif"/>
</fig>
<p>Interestingly, most of the studies aiming to characterize the plastisphere mentioned that Cyanobacteria were overrepresented on plastics compared to the surrounding free-living and organic particle-attached fractions. The relative importance of photosynthetic activities that Cyanobacteria living on plastic have on global pelagic primary production is still unknown.</p>
<p>Coupling primary production and heterotrophic production measurements over large temporal and spatial scales will be necessary to obtain a better view of the role of the plastisphere on carbon cycling in the oceans. Microorganisms are not only involved in the carbon cycle, but basically in all other biogeochemical cycles including nitrogen, sulfur, iron, manganese, chromium, phosphorus, calcium and silicate cycles, which may also be impacted by the presence of plastic at sea (<xref ref-type="bibr" rid="B54">Hutchins and Fu, 2017</xref>).</p>
</sec>
<sec><title>Potential Dispersion of Pathogen Species</title>
<p>Interest has been raised about opportunist pathogen dispersal on plastics, such as animal or human pathogenic <italic>Vibrio</italic> sp. (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>). Marine plastic debris as vector of harmful species was first suggested by <xref ref-type="bibr" rid="B90">Mas&#x00F3; et al. (2003)</xref>, who identified potential harmful dinoflagellates such as <italic>Ostreopsis</italic> sp. and <italic>Coolia</italic> sp. Putative pathogens of fish (<italic>Tenacibaculum</italic> sp.) and of invertebrates (<italic>Phormidium</italic> sp. and <italic>Leptolyngbya</italic> sp.) were found to be more common on plastic compared to surrounding seawater (<xref ref-type="bibr" rid="B26">Dussud et al., 2018a</xref>). Some bacterial taxa considered as putative pathogens for human, coral and fish were also found in the intertidal zone of the Yangtze Estuary, at relatively low abundance (&#x003C;1.6%) (<xref ref-type="bibr" rid="B62">Jiang et al., 2018</xref>). A putative pathogen for coral <italic>Halofolliculina</italic> spp. was found to be abundant on some western Pacific plastic debris (<xref ref-type="bibr" rid="B40">Goldstein et al., 2014</xref>). Some toxic eukaryotic species were also mentioned by <xref ref-type="bibr" rid="B23">Debroas et al. (2017)</xref> at low abundance (&#x003C;0.04%), but might be regarded as hitchhiker organisms. Nevertheless, caution should be taken since the 16S rRNA metabarcoding approach used in all these studies was not an appropriate method for describing bacterial virulence. The recent coupling of the 16S rRNA metabarcoding technique with the detection of virulence-associated genes may be an interesting option to address this question (<xref ref-type="bibr" rid="B70">Kirstein et al., 2016</xref>). Pathogenicity evidence on marine animals in relation to the plastisphere has never been proven, and further research will be required before publicizing alarmist conclusions on the possible responsibility of plastic debris as vector for the spread of disease-causing organisms. Apart from those results, microplastics colonized by pathogens may also pose threats to humans who are exposed to contaminated beach and bathing environments (<xref ref-type="bibr" rid="B68">Keswani et al., 2016</xref>). Evidence is still missing to determine whether plastic debris could lead to the spread and prolonged persistence of pathogenic species in the oceans.</p>
</sec>
<sec><title>Factors Driving the Plastisphere Composition and Activities</title>
<p>Factors driving the plastisphere composition are complex, mainly spatial and seasonal, but are also influenced by the polymer type, surface properties and size. Plastisphere communities studied in different polymer types floating in the North Pacific and North Atlantic reflected first their biogeographic origins, and to a lesser extent the plastic type (<xref ref-type="bibr" rid="B4">Amaral-Zettler et al., 2015</xref>). Similar conclusions were found for bacterial communities colonizing plastics along an environmental gradient. These communities are shaped firstly by the freshwater to marine environmental conditions and secondarily by the plastic type (PS and PE) (<xref ref-type="bibr" rid="B100">Oberbeckmann et al., 2018</xref>). Inversely, another study based on a large number of microplastics sampled in the western Mediterranean Sea showed no effect of geographical location (including coastal and open ocean samples) or plastic type (mainly PE, PP, and PS) on the bacterial community composition. The growing number of studies on the plastisphere are giving a better view of the microbial biofilm community on plastics in the oceans, but the complex network of influences is still the subject of ongoing debate. A clearer picture will hopefully emerge from more extensive investigations with widespread and numerous samples, together with better descriptions of the physical and chemical properties of the polymers.</p>
<p>The physical properties of plastic offer a unique habitat that contribute to the long-distance transport of diverse microbial hitchhikers attached to its surface (<xref ref-type="bibr" rid="B46">Harrison et al., 2011</xref>; <xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>). A vast range of other phyla, including Arthropoda, Annelida, Mollusca, Bryozoa, and Cnidaria have conferred on plastics the role of vector for the transfer of organisms, some of them being cataloged as invasive alien species (<xref ref-type="bibr" rid="B102">Oberbeckmann et al., 2015</xref>). For instance, plastic debris with tropical biota including corals was detected in the Netherlands (<xref ref-type="bibr" rid="B51">Hoeksema, 2012</xref>), and Southern Ocean bryozoans were observed in Antarctica (<xref ref-type="bibr" rid="B10">Barnes and Fraser, 2003</xref>). Interactions between micro- and macro-organisms, their substratum and their surroundings are needed to better predict the ecological consequences of microplastics transported through the global oceans.</p>
</sec>
</sec>
<sec><title>How Much Can Microorganisms Participate in Plastic Degradation at Sea?</title>
<sec><title>Definition and Main Processes Involved in Plastic Biodegradation</title>
<p>Biodegradation of plastic is a process that results in total or partial conversion of organic carbon into biogas and biomass associated with the activity of a community of microorganisms (bacteria, fungi, and actinomycetes) capable of using plastic as a carbon source (<xref ref-type="bibr" rid="B120">Shah et al., 2008</xref>). Depending on the respiratory conditions (aerobic / anaerobic) and the microorganisms involved, the biogas will be different (CO<sub>2</sub>, CH<sub>4</sub>, H<sub>2</sub>S, NH<sub>4</sub>, and H<sub>2</sub>) (<xref ref-type="bibr" rid="B92">Mohee et al., 2008</xref>).</p>
<p>Microorganisms, including bacteria and fungi, present the capabilities to degrade or deteriorate plastics and several review papers updated the list of plastic-degraders (<xref ref-type="bibr" rid="B120">Shah et al., 2008</xref>; <xref ref-type="bibr" rid="B11">Bhardwaj et al., 2013</xref>; <xref ref-type="bibr" rid="B63">Kale et al., 2015</xref>; <xref ref-type="bibr" rid="B106">Pathak, 2017</xref>). <italic>Arthrobacter</italic>, <italic>Corynebacterium</italic>, <italic>Micrococcus</italic>, <italic>Pseudomonas</italic>, <italic>Rhodococcus</italic>, and <italic>Streptomyces</italic> were the prominent microbial taxa able to use plastic as sole carbon source and energy in laboratory conditions. <xref ref-type="table" rid="T2">Table 2</xref> proposes an update of the current list of microorganisms proven to present biodegradation capabilities under laboratory conditions.</p>
<table-wrap position="float" id="T2">
<label>Table 2</label>
<caption><p>List of microbial strains able to biodegrade various types of polymers.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left">Type of polymer</th>
<th valign="top" align="left">Strains</th>
<th valign="top" align="left">Reference</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">PE</td>
<td valign="top" align="left"><italic>Brevibacillus borstelensis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B44">Hadad et al., 2005</xref>; <xref ref-type="bibr" rid="B91">Mohanrasu et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus weihenstephanensis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B56">Ingavale and Raut, 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Comamonas</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B107">Peixoto et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Delftia</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B107">Peixoto et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Stenotrophomonas</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B107">Peixoto et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Achromobacter xylosoxidans</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B75">Kowalczyk et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus</italic> sp. YP1</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B142">Yang et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Enterobacter asburiae</italic> YT1</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B142">Yang et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus amyloliquefaciens</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B20">Das and Kumar, 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus pumilus</italic> M27</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B48">Harshvardhan and Jha, 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Kocuria palustris</italic> M16</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B48">Harshvardhan and Jha, 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Lysinibacillus xylanilyticus</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B30">Esmaeili et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus mycoides</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B55">Ibiene et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus subtilis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B55">Ibiene et al., 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas aeruginosa</italic> PAO1 (ATCC 15729)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B78">Kyaw et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas aeruginosa</italic> (ATCC 15692)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B78">Kyaw et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas putida</italic> KT2440 (ATCC 47054)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B78">Kyaw et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas syringae</italic> DC3000 (ATCC 10862)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B78">Kyaw et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Brevibacillus parabrevis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B111">Pramila, 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Acinetobacter baumannii</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B111">Pramila, 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas citronellolis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B111">Pramila, 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus sphaericus</italic></td>
<td valign="top" align="left">Sudhakar et al., 2008</td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Rhodococcus ruber</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B39">Gilan and Sivan, 2013</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Aspergillus versicolor</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B112">Pramila and Ramesh, 2011</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Aspergillus</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B112">Pramila and Ramesh, 2011</xref>; <xref ref-type="bibr" rid="B122">Sheik et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Chaetomium</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B127">Sowmya et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Aspergillus flavus</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B127">Sowmya et al., 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Penicillium simplicissimum</italic></td>
<td valign="top" align="left">Yamada et al., 2000; <xref ref-type="bibr" rid="B128">Sowmya et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Lasiodiplodia theobromae</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B122">Sheik et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Paecilomyces lilacinus</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B122">Sheik et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>P. pinophilum</italic>, <italic>A. niger</italic>, <italic>Gliocladium virens</italic>, and <italic>P. chrysosporium</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B87">Manzur et al., 2004</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Aspergillus glaucus</italic> and <italic>A. niger</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B67">Kathiresan, 2003</xref></td>
</tr>
<tr>
<td valign="top" align="left">PET</td>
<td valign="top" align="left"><italic>Bacillus amyloliquefaciens</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B99">Novotn&#x00FD; et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Nocardia</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B121">Sharon and Sharon, 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Ideonella sakaiensis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B145">Yoshida et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Humicola insolens</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B115">Ronkvist et al., 2009</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas mendocina</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B115">Ronkvist et al., 2009</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Thermobifida fusca</italic> (DSM 43793)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B96">M&#x00FC;ller et al., 2005</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Penicillium citrinum</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B82">Liebminger et al., 2007</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Thermomonospora fusca</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B2">Alisch et al., 2004</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Fusarium oxysporum</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B98">Nimchua et al., 2007</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Fusarium solani</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B2">Alisch et al., 2004</xref>; <xref ref-type="bibr" rid="B98">Nimchua et al., 2007</xref></td>
</tr>
<tr>
<td valign="top" align="left">PHB</td>
<td valign="top" align="left"><italic>Crupriavidus</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B89">Mart&#x00ED;nez-Tob&#x00F3;n et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Marinobacter algicola</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B89">Mart&#x00ED;nez-Tob&#x00F3;n et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">Mixed cultures</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B5">Ansari and Fatma, 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Schlegella thermodepolymerans</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B114">Romen et al., 2004</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Caenibacterium thermophilum</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B114">Romen et al., 2004</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Acidovorax</italic> sp. TP4</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B72">Kobayashi et al., 1999</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas stutzeri</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B133">Uefuji et al., 1997</xref>; <xref ref-type="bibr" rid="B89">Mart&#x00ED;nez-Tob&#x00F3;n et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Leptothrix discophora</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B130">Takeda et al., 1998</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Alcaligenes faecalis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B132">Tanio et al., 1982</xref>; <xref ref-type="bibr" rid="B71">Kita et al., 1995</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Comamonas acidovorans</italic> YM1609</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B66">Kasuya et al., 1997</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Comamonas testosteroni</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B66">Kasuya et al., 1997</xref>; <xref ref-type="bibr" rid="B89">Mart&#x00ED;nez-Tob&#x00F3;n et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas lemoignei</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B133">Uefuji et al., 1997</xref>; <xref ref-type="bibr" rid="B89">Mart&#x00ED;nez-Tob&#x00F3;n et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Ralstonia pickettii</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B141">Yamada et al., 1993</xref>; <xref ref-type="bibr" rid="B89">Mart&#x00ED;nez-Tob&#x00F3;n et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas fluorescens</italic> YM1415 and nine Gram-</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B95">Mukai et al., 1994</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Aspergillus niger</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B77">Kumaravel et al., 2010</xref></td>
</tr>
<tr>
<td valign="top" align="left">PHBV</td>
<td valign="top" align="left"><italic>Clostridium botulinum</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B1">Abou-Zeid et al., 2001</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Clostridium acetobutylicum</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B1">Abou-Zeid et al., 2001</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Streptomyces</italic> sp. SNG9</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B85">Mabrouk and Sabry, 2001</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas lemoignei</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B61">Jendrossek et al., 1993</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Paecilomyces lilacinus</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B117">Sang et al., 2001</xref></td>
</tr>
<tr>
<td valign="top" align="left">PS</td>
<td valign="top" align="left">Strain TM1 and ZM1</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B131">Tang et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus subtilis</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B6">Asmita et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Staphylococcus aureus</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B6">Asmita et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Streptococcus pyogenes</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B6">Asmita et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Exiguobacterium</italic> sp.</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B143">Yang et al., 2015</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus</italic> sp NB6, <italic>Pseudomonas aeruginosa</italic> NB26, <italic>Exiguobacterium</italic> sp., <italic>Microbacterium</italic> sp. NA23, <italic>Paenibacillus urinalis</italic> NA26</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B7">Atiq et al., 2010</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Rhodococcus ruber</italic></td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B93">Mor and Sivan, 2008</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Pseudomonas putida</italic> CA-3 (NCIMB 41162)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B137">Ward et al., 2006</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left"><italic>Bacillus</italic> sp. STR-Y-O</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B104">Oikawa et al., 2003</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">Mixed microbial communities</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B65">Kaplan et al., 1979</xref></td>
</tr>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="left">Mixed microbial communities (<italic>Bacillus</italic>, <italic>Pseudomonas</italic>, <italic>Micrococcus</italic>, and <italic>Nocordia</italic>)</td>
<td valign="top" align="left"><xref ref-type="bibr" rid="B123">Sielicki et al., 1978</xref></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>polyethylene (PE), polyethylene terephthalate (PET), polyhydroxybutyrate (PHB), and Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), and polystyrene (PS). Detailed information on the origin of the strains and the methods used to prove biodegradation are available in the <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>Biodegradation is considered to occur after or concomitant with physical and chemical degradation (abiotic degradation), which weakens the structure of polymers as revealed by roughness, cracks and molecular changes (<xref ref-type="bibr" rid="B57">&#x0130;pekoglu et al., 2007</xref>). Alteration of plastic properties due to abiotic degradation is called &#x201C;aging&#x201D; and in nature depends on several factors such as temperature, solar light and chemicals that enhance the rate of degradation by oxidizing or disrupting the length of the polymer chain.</p>
<p>Biodegradation can be summarized in four essential steps, which have been described in detail in a review by <xref ref-type="bibr" rid="B25">Dussud and Ghiglione (2014)</xref>:</p>
<list list-type="simple" prefix-word="simple">
<list-item><label>-</label><p>Bio-deterioration relates to the biofilm growing on the surface and inside the plastic, which increases the pore size and provokes cracks that weaken the physical properties of the plastic (physical deterioration) or releases acid compounds that modify the pH inside the pores and results in changes in the microstructure of the plastic matrix (chemical deterioration).</p></list-item>
<list-item><label>-</label><p>Bio-fragmentation corresponds to the action of extracellular enzymes (oxygenases, lipases, esterases, depolymerases and other enzymes that may be as diverse as the large spectrum of polymer types) released by bacteria colonizing the polymer surface. These enzymes will reduce the molecular weight of polymers and release oligomers and then monomers that can be assimilated by cells.</p></list-item>
<list-item><label>-</label><p>Assimilation allows oligomers of less than 600 Daltons to be integrated inside the cells to be used as a carbon source, thus increasing the microbial biomass.</p></list-item>
<list-item><label>-</label><p>Mineralization is the ultimate step in the biodegradation of a plastic polymer and results in the excretion of completely oxidized metabolites (CO<sub>2</sub>, N<sub>2</sub>, CH<sub>4</sub>, and H<sub>2</sub>O).</p></list-item>
</list>
</sec>
<sec><title>Rates of Plastic Degradation</title>
<p>Rates of degradation of conventional plastics by microorganisms are extremely low, even in optimized laboratory conditions (<xref ref-type="bibr" rid="B76">Krueger et al., 2015</xref>). Most of the conventional plastics are recalcitrant to biodegradation in marine and terrestrial environments, resulting in lifetimes of decades or even centuries (<xref ref-type="bibr" rid="B76">Krueger et al., 2015</xref>). Plastics present low bioavailability since they are generally solid and made of densely cross-linked polymers that provide low accessibility for microbes and enzymes circumscribed to the outermost layer of the items. In the pelagic ecosystem, plastics are biodegraded by the aerobic metabolism of microorganisms, i.e., the end product of the reaction will be microbial biomass, CO<sub>2</sub> and H<sub>2</sub>O. The anaerobic biodegradation pathway would be more frequently encountered in sediment and is supposed to be even slower than in the pelagic zone (<xref ref-type="bibr" rid="B58">Ishigaki et al., 2004</xref>). Unfavorable C/N ratio is a key factor for biodegradation of other hydrocarbon-based products in the oceans (<xref ref-type="bibr" rid="B119">Sauret et al., 2016</xref>) and may potentially also limit plastic biodegration.</p>
<p>Data currently available rely heavily on culture-based approaches in laboratory conditions, although bacteria that can be cultured represent less than 1% of the number of bacteria in nature (the so-called &#x201C;great plate count anomaly&#x201D;) and a very small proportion of its very large diversity (<xref ref-type="bibr" rid="B53">Hugenholtz et al., 2009</xref>). To date, data on the rate of plastic mineralization in the oceans are still virtually non-existent. Congruent descriptions of the plastisphere that forms an abundant biofilm characterized by very diverse bacteria with active plastic-specific characteristics are available (<xref ref-type="bibr" rid="B23">Debroas et al., 2017</xref>; <xref ref-type="bibr" rid="B27">Dussud et al., 2018b</xref>). Evidence of pits visualized in the plastic debris that conform to bacterial shapes directly found in the marine environment (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>) together with a number of putative xenobiotic degradation genes likely involved in plastic degradation that were found to be significantly more abundant in the plastic-specific communities (<xref ref-type="bibr" rid="B13">Bryant et al., 2016</xref>; <xref ref-type="bibr" rid="B23">Debroas et al., 2017</xref>; <xref ref-type="bibr" rid="B27">Dussud et al., 2018b</xref>) are thus of great interest. A recent study underlined the need of cometabolic pathways on PE biodegradation, thus confirming that complex microbial communities rather than single species are necessary to degrade recalcitrant plastic (<xref ref-type="bibr" rid="B129">Syranidou et al., 2017</xref>). So far, the timescales of degradation and the characterization and the fate of the degradation products, are fundamental, yet still unanswered questions.</p>
</sec>
<sec><title>Standard Tests for Plastic Biodegradability at Sea</title>
<p>The current standards for marine environments propose tests based on respirometry measurements, susceptible to describe the mineralization step of plastic biodegradation in aerobic conditions (see <xref ref-type="fig" rid="F2">Figure 2</xref>). They impose a minimum percentage of conversion from plastic to CO<sub>2</sub> ranging from 60 to 70% over a period of 3 months (ASTM D6691-09), 6 months (ASTM D7473-12), or 24 months (ISO 18830, ISO 19679, ASTM D7991-15) under aerobic conditions (see <xref ref-type="fig" rid="F3">Figure 3</xref>). Anaerobic biodegradation is characterized by specific standards (see for example ASTM D5511-18), but to our knowledge none of these standards applies to the marine environment. Biodegradation of a plastic is characterized by the time required to achieve mineralization under controlled conditions. These tests cannot be considered as a proof of ready biodegradability (total conversion of plastic into biomass and CO<sub>2</sub>), but rather an indication about a potential for biodegradation in the oceans.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>The different steps of plastic biodegradation at sea (modified from <xref ref-type="bibr" rid="B25">Dussud and Ghiglione, 2014</xref>).</p></caption>
<graphic xlink:href="fmicb-10-00865-g002.tif"/>
</fig>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Current standards on biodegradability of plastics at sea. ISO 18830: Plastics-determination of aerobic biodegradation of non-floating plastic materials in a seawater/ sandy sediment interface &#x2013; Method by measuring the oxygen demand in closed respirometer. ISO 19679: Determination of aerobic biodegradation of non-floating plastic materials in a seawater/sediment interface &#x2013; method by analysis of evolved carbon dioxide respirometer. ASTMD7991: Determining aerobic biodegradation of plastics buried in sandy marine sediment under controlled laboratory conditions. ASTM D7473: Standard test method for weight attrition of plastic materials in the marine environment by open system aquarium incubations. ASTM: Standard test method for determining aerobic biodegradation of plastic materials in the marine environment by a defined microbial consortium or natural sea water inoculum.</p></caption>
<graphic xlink:href="fmicb-10-00865-g003.tif"/>
</fig>
<p>Recently, these standards were considered insufficient in their ability to realistically predict the biodegradability in marine environment (<xref ref-type="bibr" rid="B45">Harrison et al., 2018</xref>). These tests can significantly underestimate the time required for polymer biodegradation within natural ecosystems. First, the authors underlined &#x201C;biases associated with the preparation of experimental inocula and the test conditions themselves, including the use of preselected and/or pre-conditioned strains, artificially modified inocula, powdered test materials, nutrient-rich synthetic media and test temperatures that are frequently higher than those encountered within the environment.&#x201D; The authors also pointed out &#x201C;the lack of clear guidelines for the analysis of different polymer types, including composite materials and plastics that contain additives,&#x201D; which can considerably influence the rates of biodegradation. &#x201C;There is also a paucity of guidelines for materials of varying shapes and sizes and, in certain cases, the test procedures lack a sufficient level of statistical replication.&#x201D; Another concern, not raised by <xref ref-type="bibr" rid="B45">Harrison et al. (2018)</xref>, is the biases associated with the common method for determining biodegradability, i.e., measurements of CO<sub>2</sub> evolution. This method may lead to either underestimation or overestimation of the plastic biodegradation due to other processes. It is noteworthy that plastic generally presents high sorption capability of organic matter (especially hydrophobic organic chemicals including pollutants) that can be biodegraded by the plastisphere biofilm, thus resulting in a CO<sub>2</sub> production that has nothing to do with plastic biodegradation (<xref ref-type="bibr" rid="B80">Lee et al., 2014</xref>). Inversely, several papers reported the importance of photosynthetic microorganisms growing on plastics, which consume CO<sub>2</sub> regardless of plastic biodegradation (<xref ref-type="bibr" rid="B147">Zettler et al., 2013</xref>; <xref ref-type="bibr" rid="B13">Bryant et al., 2016</xref>; <xref ref-type="bibr" rid="B27">Dussud et al., 2018b</xref>). Further studies are needed to evaluate the relative degree of CO<sub>2</sub> consumption by photosynthesis, CO<sub>2</sub> production by organic matter degradation by the plastisphere as compared to CO<sub>2</sub> production due to plastic biodegradation.</p>
<p>The limitations of the respiratory methods described above can be overcome by other additional analytical techniques and approaches to confirm changes in the physical properties and the chemical structure of polymers during biodegradation. Alterations in the visual appearance and in the mass or changes in mechanical properties are relatively easy and low-cost methods for the evaluation of physical changes during biodegradation. Other methods could be combined to confirm changes in the molecular structure of polymers, such as measurements of surface hydrolysis and other chromatographic (gas chromatography with or without flame ionization detection, liquid chromatography, gel-permeation chromatography) measurements coupled or not with spectrometric techniques (mass spectrometry, nuclear magnetic resonance spectroscopy, Fourier-transform infrared spectroscopy). Optical, atomic force and scanning electron microscopy can also be used to assess the biodeterioration of the surface due to microbial activity or biofilm formation. Any of these techniques are enough to prove biodegradation by its own, and each of them has limitations that have been previously detailed for example in the excellent reviews of (<xref ref-type="bibr" rid="B74">Koutny et al., 2006</xref>; <xref ref-type="bibr" rid="B45">Harrison et al., 2018</xref>; <xref ref-type="bibr" rid="B50">Ho et al., 2018</xref>). The current standards sometimes propose to use such techniques to corroborate the main test based on respirometry measurement, but no clear guidelines on how to use these tests is provided.</p>
</sec>
<sec><title>Examples of Metabolic Pathways of Polymer Biodegradation</title>
<p>There are currently more than 5,300 grades of synthetic polymers for plastics in commerce (<xref ref-type="bibr" rid="B135">Wagner and Lambert, 2018</xref>). They are generally produced with a range of chemical additives such as plasticizers, flame retardants, antioxidants and other stabilizers, pro-oxidants, surfactants, inorganic fillers or pigments (<xref ref-type="bibr" rid="B135">Wagner and Lambert, 2018</xref>). Their heterogeneous physical-chemical properties will likely result in very heterogeneous metabolic pathways of biodegradation, especially when considering the large variety of microorganisms that may interact for the degradation of a single piece of plastic, together with the environmental factors of very dynamic oceanic conditions. We are aware that treating plastic as a single compound does not make sense and providing details on the metabolic pathways of plastic biodegradation would necessarily be unrepresentative of the complexity of the various processes that occur in the environment. We have chosen to focus on the metabolic pathways associated with the biodegradation of model compounds used in the formulation of conventional (PE, PET, and PS) and so called &#x201C;biodegradable&#x201D; plastics (PHA) that are the most popular and the most extensively studied in the literature. Moreover, it should be noted that because of the difficulty of dealing with long-term experiments and complex communities under natural conditions, all the following studies describing the metabolic pathways of plastic biodegradation were done using a culture-based approach.</p>
<sec><title>Metabolic Pathways of Polyethylene (PE) Biodegradation</title>
<p>High- and low-density polyethylene is a long linear carbon chain (CH<sub>2</sub>) belonging to the family of polyolefins. Polyethylene is derived from petroleum sources and its large use in our daily life made it the first plastic waste found at sea surface. PE is considered difficult to biodegrade because the long chains of carbons and hydrogens are very stable and contain very balanced charges. Microorganisms generally need imbalance of electric charge to perform biodegradation. To destabilize the local electric charge, bacteria use oxygenases: enzymes able to add oxygen to a long carbon chain (<xref ref-type="bibr" rid="B76">Krueger et al., 2015</xref>). For instance, mono-oxygenases and di-oxygenases incorporate, respectively, one and two oxygen atoms, forming alcohol or peroxyl groups that are less recalcitrant for biodegradation. Oxidation may also be processed by abiotic reactions associated with UV radiation or temperature (for more details, see the review by <xref ref-type="bibr" rid="B125">Singh and Sharma, 2008</xref>). Oxidation of PE results in the formation of carboxylic groups, alcohols, ketones, and aldehydes by a radical reaction (<xref ref-type="bibr" rid="B134">Vasile, 1993</xref>; <xref ref-type="bibr" rid="B36">Gewert et al., 2015</xref>). The oxidation and fragmentation of PE make the polymer more hydrophilic and facilitates access to other extracellular enzymes, such as lipases and esterases after the formation of carboxylic groups, or endopeptidases for amide groups (<xref ref-type="bibr" rid="B36">Gewert et al., 2015</xref>). Other enzymes such as laccase in <italic>Rhodococcus ruber</italic> are excreted and can facilitate the biodegradation of PE (<xref ref-type="bibr" rid="B118">Santo et al., 2013</xref>). Interestingly, a recent study focused on soluble oxidized oligomers showed that 95% of these compounds were assimilated by a strain of <italic>Rhodococcus rhodochrous</italic> after 240 days of incubation (<xref ref-type="bibr" rid="B32">Eyheraguibel et al., 2017</xref>). The polymer is broken down into small oligomers of 600 Da incorporated in the cells by carriers belonging to the Major Facilitor Superfamily (MFS) or harboring ATP binding cassettes (ABC) (<xref ref-type="bibr" rid="B43">Gravouil et al., 2017</xref>). &#x03B2;-oxidation transforms oxidized carboxylic molecules (having an even number of carbon atoms) into acetyl coA or propionyl coA (if odd number of carbons). Carboxylation of propionyl coA into succinyl coA is performed by propionyl-coA carboxylase. <xref ref-type="bibr" rid="B43">Gravouil et al. (2017)</xref>, propose identification of an overexpressed enzyme, when the bacteria find PE in the medium (<xref ref-type="bibr" rid="B43">Gravouil et al., 2017</xref>). Acetyl coA and succinyl coA enter the tricarboxylic acid (TCA) cycle (<xref ref-type="fig" rid="F4">Figure 4</xref>). This cycle produces chemical energy in the form of a reducing power (NADH, H + and CoQ<sub>10</sub>H<sub>2</sub>) used in the respiratory chain to produce ATP, which is necessary to create new microbial biomass <italic>via</italic> replication processes. It also produces CO<sub>2</sub> and H<sub>2</sub>O that sign the complete mineralisation of PE.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Biodegradation pathways under aerobic conditions of three conventional plastics (polyethylene, polyethylene terephthalate, and polystyrene) and one biodegradable plastic (polyhydroxybutyrate). See explanation in the text indicating that degradation rates may be very different between polymer types. Complete mineralisation into CO<sub>2</sub> and H<sub>2</sub>O occurred after several steps of transformation of the initial molecule involving several microbial enzymes. The common stage of transformation through the TCA cycle produce also ATP, which is a key component for bacterial growth and biomass production. Enzyme commission numbers (EC numbers) were given for each enzyme-catalyzed reactions. EC 3.1.1.76, poly(3-hydroxyoctanoate) depolymerase; EC 2.3.1.16, acetyl-CoA C-acyltransferase; EC 1.1.1.35, 3-hydroxyacyl-CoA dehydrogenase; EC 1.3.8.7, medium-chain acyl-CoA dehydrogenase; EC 4.2.1.17, enoyl-CoA hydratase; EC 3.1.1.101, poly(ethylene terephthalate) hydrolase; EC 3.1.1.102, Mono(2-hydroxyethyl) terephthalate hydrolase; EC 1.14.12.15, terephthalate 1,2-dioxygenase; EC 1.3.1.53, 3,4-dihydroxycyclohexa-1,5-diene-1,4-dicarboxylate dehydrogenase; EC 1.13.11.8, protocatechuate 4,5-dioxygenase; EC 1, Oxidoreductase; EC 3, Hydrolase; EC 1.14.14, 11 styrene monooxygenase; EC 5.3.99.7, styrene-oxide isomerase; EC 1.2.1.39, phenylacetaldehyde dehydrogenase; EC 6.2.1.30, phenylacetylCoA ligase; EC 1.14.13.149, phenylacetyl-CoA 1,2-epoxidase; EC 1.14.13, ring 1,2-epoxyphenylacetyl-CoA isomerase; EC 1.2.1.91, 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase; EC 2.3.1.174, 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; EC 4.2.1.17, 2,3-dehydroadipyl-CoA hydratase; EC 1.1.1.35, 3-hydroxyadipyl-CoA dehydrogenase.</p></caption>
<graphic xlink:href="fmicb-10-00865-g004.tif"/>
</fig>
<p>For 20 years now, scientists have been interested in the biodegradation of polyethylene by the microbial community. Bacterial and fungal strains presenting biodegradation capabilities of PE are listed in <xref ref-type="table" rid="T2">Table 2</xref> and <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>.</p>
<p>Genetic evidence of PE biodegradation remains scarce in the literature, but preliminary work highlighted enzymes, transporters or genes that may be involved in this process (<xref ref-type="bibr" rid="B43">Gravouil et al., 2017</xref>). Alkane hydroxylase genes were found to play a central role in PE biodegradation for <italic>Pseudomonas</italic> sp. E4 strain, which was capable of mineralizing 28.6% of the organic carbon of the polymer in 80 days. The alkB gene was then introduced in <italic>Escherichia coli</italic> BL21 strain, which was then able to mineralize 19.3% of the organic carbon of the polymer (<xref ref-type="bibr" rid="B144">Yoon et al., 2012</xref>). Only two other studies used genetic analysis to provide evidence for the importance of laccase in PE biodegradation by <italic>R. ruber</italic> (<xref ref-type="bibr" rid="B126">Sivan, 2011</xref>; <xref ref-type="bibr" rid="B118">Santo et al., 2013</xref>; <xref ref-type="bibr" rid="B43">Gravouil et al., 2017</xref>).</p>
</sec>
<sec><title>Metabolic Pathways of Polyethylene Terephthalate (PET) Biodegradation</title>
<p>Polyethylene terephthalate is part of the polyester family and it is widely used in the design of bottles and synthetic fibers. It is considered as persistent plastic in the environment because of its long carbon chains containing aromatic rings that are difficult to biodegrade (<xref ref-type="bibr" rid="B88">Marten et al., 2005</xref>). In recent years, studies have shown that some bacterial strains were able to degrade PET as sole carbon source and energy, such as <italic>Ideonella sakaiensis</italic> (<xref ref-type="bibr" rid="B145">Yoshida et al., 2016</xref>), <italic>Nocardia</italic> sp. (<xref ref-type="bibr" rid="B121">Sharon and Sharon, 2017</xref>) <italic>Pseudomonas mendocina</italic> (<xref ref-type="bibr" rid="B115">Ronkvist et al., 2009</xref>), <italic>Thermobifida fusca</italic> (<xref ref-type="bibr" rid="B96">M&#x00FC;ller et al., 2005</xref>). Some fungal communities are also known to biodegrade PET, such as <italic>Humicola insolens</italic>, several <italic>Fusarium</italic> species, and <italic>Penicillium citrinum</italic> (<xref ref-type="bibr" rid="B124">Silva et al., 2005</xref>; <xref ref-type="bibr" rid="B82">Liebminger et al., 2007</xref>; <xref ref-type="bibr" rid="B98">Nimchua et al., 2007</xref>; <xref ref-type="bibr" rid="B115">Ronkvist et al., 2009</xref>). Cutinases or hydrolases play key roles in PET biodegradation (<xref ref-type="bibr" rid="B19">Danso et al., 2018</xref>). For example, <italic>I. sakaiensis</italic> 201-F6 adhered to the PET surface and first secreted two enzymes involved in the biodegradation process of PET: PETase (hydrolase) and MHETase. PETase is an extracellular enzyme capable of hydrolysing PET to mono-(2-hydroxyethyl) terephthalate (MHET), terephthalic acid (TPA), and bis (2-hydroxyethyl) terephthalate (BHET). Fungi seem to have the same biodegradation strategy and are able to degrade PET into BHET and MHET (<xref ref-type="bibr" rid="B82">Liebminger et al., 2007</xref>). The MHETase hydrolyzes MHET to TPA and ethylene glycol (EG). The terephthalic acid molecule is then internalized in the bacterial cells by the TPA transporter (<xref ref-type="bibr" rid="B52">Hosaka et al., 2013</xref>) and then catabolized by TPA 1,2-dioxygenase (TPADO) and 1,2-dihydroxy-3,5-cyclohexadiene-1,4-dicarboxylate dehydrogenase (DCDDH) to give protocatechuic acid (PCA) as the final molecule (<xref ref-type="bibr" rid="B145">Yoshida et al., 2016</xref>). This PCA is cleaved by PCA 3,4 dioxygenase (PCA34) to give the hemiacetal form of 4-carboxy-2-hydroxymuconic. The latter becomes the substrate of a dehydrogenase to form 2-pyrone-4,6-dicarboxylic acid that enters the TCA cycle and initially transformed into pyruvate and oxaloacetate, then assimilated as CO<sub>2</sub> and H<sub>2</sub>O (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
</sec>
<sec><title>Metabolic Pathways of Polystyrene (PS) Biodegradation</title>
<p>Polystyrene is a polymer composed of styrene monomers (CH<sub>2</sub> = CH<sub>2</sub>-Ph). The polymer is highly hydrophobic and presents a high molecular weight. Like other conventional plastics, partial biodegradation in the laboratory has been observed while it continues to accumulate in the oceans (<xref ref-type="bibr" rid="B8">Auta et al., 2017</xref>) thus inciting increasing interest in PS biodegradation (see <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>; <xref ref-type="bibr" rid="B104">Oikawa et al., 2003</xref>; <xref ref-type="bibr" rid="B93">Mor and Sivan, 2008</xref>; <xref ref-type="bibr" rid="B7">Atiq et al., 2010</xref>; <xref ref-type="bibr" rid="B6">Asmita et al., 2015</xref>; <xref ref-type="bibr" rid="B143">Yang et al., 2015</xref>; <xref ref-type="bibr" rid="B131">Tang et al., 2017</xref>).</p>
<p>Several biodegradation pathways may be considered, depending on the microorganism involved. The predominant pathway is the oxidation pathway of the styrene side chain presented in <xref ref-type="fig" rid="F4">Figure 4</xref>. The styrene is directly oxidized with a styrene monooxygenase to form a styrene epoxide which will then be oxidized to phenylacetaldehyde by styrene oxide. This molecule is then catabolized into phenylacetic acid. This conversion of styrene to phenylacetic acid is called the upper pathway of styrene metabolism. Phenylacetic acid is converted to phenylacetyl-CoA (acetyl coenzyme A) by the so-called lower pathway (<xref ref-type="bibr" rid="B84">Luu et al., 2013</xref>) then subjected to several enzymatic reactions (<xref ref-type="fig" rid="F4">Figure 4</xref>) to finally enter the tricarboxylic acid (TCA) cycle. The biodegradation products enter the TCA cycle through the final formation of acetyl-Co A and succinyl-CoA (succinyl-CoenzymeA) (<xref ref-type="bibr" rid="B84">Luu et al., 2013</xref>).</p>
<p>Interestingly, <italic>Pseudomonas putida</italic> CA-3 can accumulate polyhydroxyalkanoates (PHA at medium chain length) when growing on styrene, thus using an original biodegradation pathway. A catabolic operon has been identified as responsible for this bioconversion; this path is called the PACoA (Phenylacetyl-CoA) catabolon. It involves oxidation of the aromatic ring, followed by entry into the &#x03B2;-oxidation cycle and the conversion to acetyl-CoA (<xref ref-type="bibr" rid="B105">O&#x2019;Leary et al., 2005</xref>). This acetyl-CoA can follow different metabolic pathways, either entering the TCA cycle or following the <italic>de novo</italic> fatty acid biosynthesis path which will give as final product medium-chain-length polyhydroxyalkanoates (mcl-PHAs) (<xref ref-type="bibr" rid="B105">O&#x2019;Leary et al., 2005</xref>). This study shows the complexity of studying the biodegradation pathways of these polymers and indicates the great range of possibilities when considering the large diversity of microorganisms found in the plastisphere.</p>
</sec>
<sec><title>Metabolic Pathways of Polyhydroxyalkanoate (PHA) Biodegradation</title>
<p>The current global production of PHA is increasing, reaching 49,200 tons per year that represents 2.4% of the production of bioplastics<sup><xref ref-type="fn" rid="fn01">1</xref></sup>. PHAs are biopolymers of hydroxylated fatty acids produced within a bacteria in granular form. Each PHA monomer ([CO-CH<sub>2</sub>-CHR-O]<sub>n</sub>) consists of hydroxyalkanoates linked together by ester bonds. The alkyl group (R) varies from a methyl group to a tetradecyl group. When bacteria are placed in a medium with an excess carbon source and low nutrient content, they accumulate storage granules. Over 300 bacterial species are capable of producing 80 different hydroxyalkanoate monomers, and some bacteria can accumulate up to 90% of their total weight of polymer in very specific conditions (<xref ref-type="bibr" rid="B108">Pe&#x00F1;a et al., 2014</xref>). One of the most commonly used PHA for plastic production is polyhydroxybutyrate (PHB), which has a methyl as an alkyl group (R) ([CO-CH2-CHCH3-O]<sub>n</sub>). PHB is one of the homopolymers with high commercial power because it has thermoplastic, hydrophobic, low oxygen permeability and is considered biodegradable (<xref ref-type="bibr" rid="B94">Mothes et al., 2004</xref>; <xref ref-type="bibr" rid="B14">Chang et al., 2012</xref>). It is not very deformable, because of its high crystallinity (<xref ref-type="bibr" rid="B42">Gorke et al., 2007</xref>) and it has a high melting point close to its thermal degradation temperature (<xref ref-type="bibr" rid="B113">Reis et al., 2003</xref>). A copolymer made of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) that reduces the melting point of PHB is seen to emerge in PHA production. The advantage of using PHA is that it is stable over time, as long as the conditions governing its biodegradation are not met (<xref ref-type="bibr" rid="B59">Jaffredo et al., 2013</xref>).</p>
<p>Due to their microbial origin, PHAs were found to be biodegradable in many environments such as soil, marine ecosystems or sewage sludge (<xref ref-type="bibr" rid="B31">Eubeler et al., 2010</xref>). Biodegradation of Poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) has been proven with comparable rates to that of cellulose, with faster degradation found under aerobic (85 days) compared to anaerobic (6 months) conditions (<xref ref-type="bibr" rid="B136">Wang et al., 2018</xref>). The biodegradation scheme in <xref ref-type="fig" rid="F4">Figure 4</xref> shows the different steps of PHB biodegradation. When the biodegradation is not carried out inside the cells by bacteria that produce their own PHB, other bacteria initiate the biodegradation of PHB in the medium by external hydrolysis using ectoenzymes that convert the polymers into hydroxylated acid monomers of hydroxybutyrate (HB) (<xref ref-type="bibr" rid="B108">Pe&#x00F1;a et al., 2014</xref>). This molecule is water soluble and small enough to passively diffuse across the bacterial membrane and enter the &#x03B2;-oxidation cycle. The resulting acetyl-CoA will be oxidized in the TCA cycle until final mineralisation (<xref ref-type="bibr" rid="B3">Alshehrei, 2017</xref>). PHA-degradation has been proven in the laboratory under aerobic or anaerobic conditions (see a non-exhaustive list in <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). The dominant bacteria in aerobic marine conditions belong to <italic>Clostriales</italic>, <italic>Gemmatales</italic>, <italic>Phycisphaerales</italic>, and <italic>Chlamydiales</italic>, whereas <italic>Cloacamonales</italic> and <italic>Thermotogales</italic> dominate in anaerobic sludge (<xref ref-type="bibr" rid="B136">Wang et al., 2018</xref>).</p>
</sec>
</sec></sec>
<sec><title>Concluding Remarks</title>
<p>In this review, we have presented both aspects of microbial ecotoxicology on marine plastic debris, namely the impact of plastic on marine microbial life and inversely how microbes can play a role in plastic biodegradation. An increasing number of studies either describe the different steps of biofilm formation under marine conditions, or give new insights on bacteria colonizing the aged plastics directly sampled at sea. The very diverse and active bacteria living on plastics as compared to the surrounding waters suggest a potential impact on the global biogeochemical cycles associated with the relatively recent introduction of plastic in the oceans, impact that remains to be determined. Plastic released in the oceans is also accused to be a raft for invasive species including pathogenic bacteria, but no proof of pathogenicity on marine animals or humans in relation to plastic ingestion has emerged so far.</p>
<p>A better knowledge of the plastisphere is also a critical issue in understanding the role played by bacteria in plastic biodegradation. Several studies have underlined that current standards are failing to prove biodegradability at sea for several reasons that have been highlighted in this review. Biodegradation of a polymer at sea depends on many factors related to its own composition, but also on the various ecosystems and environmental conditions encountered during its very long lifetime. It is for these reasons that plastic polymers continue to accumulate at sea and that biodegradation rates reported in the laboratory are never reached in the environment. Thus, a complete study of the biodegradation of a polymer at sea must combine several monitoring parameters, and especially be confirmed in the field with experiments <italic>in situ</italic>. Given the complexity of the plastic problem, research network initiatives such as &#x201C;Polymers &#x0026; Oceans&#x201D; that bring together physicists, chemists and biologists are required to answer the wishes and needs of many scientists to face this environmental problem and its resonance in the society.<sup><xref ref-type="fn" rid="fn02">2</xref></sup></p>
</sec>
<sec><title>Author Contributions</title>
<p>J-FG designed the general plan of the review. JJ, A-LM, JC, and J-FG made the figures. JJ, JC, CO, CP, PC, MP-P, VB, A-LM, and J-FG wrote the manuscript and approved the final version.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> The work was made possible thanks to support granted to ANR by the Program OXOMAR (funded by the French Ministry for Education and Research, <ext-link ext-link-type="uri" xlink:href="http://lomic.obs-banyuls.fr/fr/axe_4_ecotoxicologie_et_ingenierie_metabolique_microbienne/oxomar.html">http://lomic.obs-banyuls.fr/fr/axe_4_ecotoxicologie_et_ingenierie_metabolique_microbienne/oxomar.html</ext-link>) and the company <email>Plastic@Sea</email> (<ext-link ext-link-type="uri" xlink:href="http://plasticatsea.com">http://plasticatsea.com</ext-link>).</p>
</fn>
</fn-group>
<ack>
<p>We wish to thank V. Domien, L. Hesse, L. Intertaglia, R. Gendron/ E-marinlab, Fondation Tara Expeditions, and Soixante seize for their help in figure design, as well as Guigui PA and VJPJS for their insightful comments on the manuscript. We are also grateful to our colleagues of the office of the international research network &#x201C;EcotoxicoMic&#x201D; on Microbial Ecotoxicology (<ext-link ext-link-type="uri" xlink:href="https://ecotoxicomic.org">https://ecotoxicomic.org</ext-link>) and of the French research network &#x201C;Polymers &#x0026; Oceans&#x201D; (<ext-link ext-link-type="uri" xlink:href="https://po2018.wixsite.com/po2018">https://po2018.wixsite.com/po2018</ext-link>) supported by CNRS.</p>
</ack>
<sec sec-type="supplementary material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2019.00865/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmicb.2019.00865/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>TABLE S1</label>
<caption><p>Detailed information on the origin and methodology used to prove the biodegradation of various polymer types (PE, PET, PHB, PHBV, and PS) by microorganisms cited in <xref ref-type="table" rid="T1">Table 1</xref>.</p></caption>
</supplementary-material>
</sec>
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