<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2021.730656</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Prevalence, Antimicrobial Susceptibility, and Molecular Characterization of <italic>Escherichia coli</italic> Isolated From Raw Milk in Dairy Herds in Northern China</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Huimin</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn3" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/491803/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Meng</surname>
<given-names>Lu</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn3" ref-type="author-notes"><sup>&#x2020;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Dong</surname>
<given-names>Lei</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="fn3" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/980463/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Yangdong</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Jiaqi</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/304974/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zheng</surname>
<given-names>Nan</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup>
<institution>Laboratory of Quality and Safety Risk Assessment for Dairy Products of Ministry of Agriculture and Rural Affairs, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff2"><sup>2</sup>
<institution>Key Laboratory of Quality &#x0026; Safety Control for Milk and Dairy Products of Ministry of Agriculture and Rural Affairs, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn id="fn1" fn-type="edited-by">
<p>Edited by: Fereidoun Forghani, IEH Laboratories and Consulting Group, United States</p>
</fn>
<fn id="fn2" fn-type="edited-by">
<p>Reviewed by: Jinxin Liu, Nanjing Agricultural University, China; Kai Deng, IEH Laboratories and Consulting Group, United States</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Nan Zheng, <email>zhengnan_1980@126.com</email></corresp>
<fn id="fn3" fn-type="equal">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work and share first authorship</p></fn>
<fn id="fn4" fn-type="other">
<p>This article was submitted to Food Microbiology, a section of the journal Frontiers in Microbiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>730656</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>06</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>08</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Liu, Meng, Dong, Zhang, Wang and Zheng.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Liu, Meng, Dong, Zhang, Wang and Zheng</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p><italic>Escherichia coli</italic> is a common bacterium in the intestines of animals, and it is also the major important cause of toxic mastitis, which is an acute or peracute disease that causes a higher incidence of death and culling of cattle. The purpose of this study was to investigate <italic>E. coli</italic> strains isolated from the raw milk of dairy cattle in Northern China, and the antibacterial susceptibility of these strains and essential virulence genes. From May to September 2015, 195 raw milk samples were collected from 195 dairy farms located in Northern China. Among the samples, 67 (34.4%) samples were positive for <italic>E. coli</italic>. About 67 <italic>E. coli</italic> strains were isolated from these 67 samples. The prevalence of Shiga toxin-producing <italic>E. coli</italic> (STEC), enterotoxigenic <italic>E. coli</italic> (ETEC), enteropathogenic <italic>E. coli</italic> (EPEC), and enteroinvasive <italic>E. coli</italic> (EIEC) were 9, 6, 4.5, and 1.5%, respectively. Among the virulence genes detected, <italic>stx</italic>1 was the most prevalent (6/67, 9%) gene, followed by <italic>eae</italic> (3/67, 4.5%), and <italic>est</italic>B (2/67, 3%). Moreover, the strains exhibited different resistance levels to ampicillin (46.3%), amoxicillin-clavulanic acid (16.4%), trimethoprim-sulfamethoxazole (13.4%), tetracycline (13.4%), cefoxitin (11.9%), chloramphenicol (7.5%), kanamycin (7.5%), streptomycin (6.0%), tobramycin (4.5%), azithromycin (4.5%), and ciprofloxacin (1.5%). All of the <italic>E. coli</italic> isolates were susceptible to gentamicin. The prevalence of &#x03B2;-lactamase-encoding genes was 34.3% in 67 <italic>E. coli</italic> isolates and 45% in 40 &#x03B2;-lactam-resistance <italic>E. coli</italic> isolates. The overall prevalence of <italic>bla</italic><sub>SHV</sub>, <italic>bla</italic><sub>TEM</sub>, <italic>bla</italic><sub>CMY</sub>, and <italic>bla</italic><sub>CTX-M</sub> genes were 1.5, 20.9, 10.4, and 1.5%, respectively. Nine non-pathogenic <italic>E. coli</italic> isolates also carried &#x03B2;-lactamase resistance genes, which may transfer to other pathogenic <italic>E. coli</italic> and pose a threat to the farm&#x2019;s mastitis management projects. Our results showed that most of <italic>E. coli</italic> were multidrug resistant and possessed multiple virulence genes, which may have a huge potential hazard with public health, and antibiotic resistance of <italic>E. coli</italic> was prevalent in dairy herds in Northern China, and ampicillin should be used cautiously for mastitis caused by <italic>E. coli</italic> in Northern China.</p>
</abstract>
<kwd-group>
<kwd><italic>Escherichia coli</italic></kwd>
<kwd>virulence</kwd>
<kwd>antimicrobial resistance</kwd>
<kwd>raw milk</kwd>
<kwd>Northern China</kwd>
</kwd-group>
<contract-num rid="cn2">ASTIP-IAS12</contract-num>
<contract-num rid="cn3">2004DA125184G2108</contract-num>
<contract-num rid="cn4">2020A01001-3-1</contract-num>
<contract-sponsor id="cn1">China Agriculture Research System of MOF and MARA</contract-sponsor>
<contract-sponsor id="cn2">The Agricultural Science and Technology Innovation Program</contract-sponsor>
<contract-sponsor id="cn3">State Key Laboratory of Animal Nutrition<named-content content-type="fundref-id">10.13039/501100011364</named-content>
</contract-sponsor>
<contract-sponsor id="cn4">Major Science and Technology Project of Xinjiang</contract-sponsor>
<counts>
<fig-count count="1"/>
<table-count count="4"/>
<equation-count count="0"/>
<ref-count count="54"/>
<page-count count="9"/>
<word-count count="6699"/>
</counts>
</article-meta>
</front>
<body>
<sec id="sec1" sec-type="intro">
<title>Introduction</title>
<p><italic>Escherichia coli</italic> was a common inhabitant of the intestine of animals (<xref ref-type="bibr" rid="ref51">Tark et al., 2016</xref>). During parturition and early lactation period, <italic>E. coli</italic> was found to usually infect mammary gland of cows, which may cause acute and local mastitis (<xref ref-type="bibr" rid="ref22">Hinthong et al., 2017</xref>). <italic>Escherichia coli</italic> is the main cause of bacterial mastitis in cows. It is usually short-lived, causing the infection that lasts 2&#x2013;3days. However, <italic>E. coli</italic> has been displayed to cause persistent infections in a few cases (<xref ref-type="bibr" rid="ref31">Lippolis et al., 2017</xref>). Pathogenic <italic>E. coli</italic> can cause disease in animals and humans due to virious virulence (<xref ref-type="bibr" rid="ref39">Ntuli et al., 2016</xref>). Based on the epidemiological, clinical, and pathogenic characteristics, <italic>E. coli</italic> is classified into different pathotypes: Shiga toxin-producing <italic>E. coli</italic> (STEC), enteroaggregative <italic>E. coli</italic> (EAEC), enterotoxigenic <italic>E. coli</italic> (ETEC), enteropathogenic <italic>E. coli</italic> (EPEC), and enteroinvasive <italic>E. coli</italic> (EIEC; <xref ref-type="bibr" rid="ref45">Rugeles et al., 2010</xref>). Numerous outbreaks associated with <italic>E. coli</italic> in milk and other foods have been reported recently (<xref ref-type="bibr" rid="ref14">EFSA-ECDC, 2012</xref>; <xref ref-type="bibr" rid="ref13">EFSA, 2015</xref>; <xref ref-type="bibr" rid="ref41">Ombarak et al., 2016</xref>). For example, STEC can generate two types of Shiga toxins (<italic>stx</italic>1 and <italic>stx</italic>2), and EPEC can produce <italic>bfp</italic> gene, which were involved in pathogenicity of gastrointestinal tract (<xref ref-type="bibr" rid="ref21">Hernandes et al., 2009</xref>; <xref ref-type="bibr" rid="ref12">Douellou et al., 2016</xref>). ETEC can express heat-stable <italic>est</italic> genes that can cause severe diarrhea. EAEC can produce <italic>aggR</italic> gene, which were associated with the generation of biofilm (<xref ref-type="bibr" rid="ref36">Medeiros et al., 2013</xref>). The <italic>ipa</italic>H gene from EIEC can lead to the occurrence of fever, vomiting, and dehydration in infected children. The higher prevalence of <italic>E. coli</italic> is closely associated with hygiene in raw milk (<xref ref-type="bibr" rid="ref500">Radostits et al., 2007</xref>). Therefore, the study on <italic>E. coli</italic> in raw milk is significant.</p>
<p>
<italic>Escherichia coli</italic> is not only with the potential occurrence, but also with the rapid development of antibiotic resistance bacteria (<xref ref-type="bibr" rid="ref39">Ntuli et al., 2016</xref>). Inappropriate selection and abuse of antibiotics could lead to antibiotic resistance in bacteria (<xref ref-type="bibr" rid="ref9">Da Silva and Mendon&#x00E7;a, 2012</xref>). Moreover, <italic>E. coli</italic> may develop acquired resistance to other antibiotics by carrying various resistance characteristics on mutation, plasmids, or transposons (<xref ref-type="bibr" rid="ref19">Gonggrijp et al., 2016</xref>). For example, extended-spectrum &#x03B2;-lactamases <italic>E. coli</italic>, resistant to &#x03B2;-lactam antibiotics including third- and fourth-generation cephalosporins, acquires ESBL by mutation or plasmid-mediated horizontal gene transfer (<xref ref-type="bibr" rid="ref15">Freitag et al., 2016</xref>). Acquired antibiotic resistance also has a transmission potential to humans and other animals (<xref ref-type="bibr" rid="ref44">Ruegg et al., 2014</xref>). Raw milk can also facilitate the transmission of antibiotic resistance genes to the human gastrointestinal tract, In addition to the presence of pathogenic bacteria. A better understanding on the resistance profile of <italic>E. coli</italic> isolates will improve our understanding of appropriate treatments for pathogen-related management (<xref ref-type="bibr" rid="ref51">Tark et al., 2016</xref>). Therefore, monitoring the antibiotic resistance of <italic>E. coli</italic> in raw milk may show the trend or specific characteristics of antibiotic resistance and help to better prevent or more effectively treat mastitis on dairy farm.</p>
<p>Antimicrobial resistance and virulence types in <italic>E. coli</italic> have been studied on raw milk of healthy dairy cattle and of bovine mastitis in a variety of countries, including Northern Italy, Romania, Brazil, Egypt, South Korea, and Thailand (<xref ref-type="bibr" rid="ref53">Trevisani et al., 2014</xref>; <xref ref-type="bibr" rid="ref41">Ombarak et al., 2016</xref>; <xref ref-type="bibr" rid="ref43">Ribeiro et al., 2016</xref>; <xref ref-type="bibr" rid="ref51">Tark et al., 2016</xref>; <xref ref-type="bibr" rid="ref22">Hinthong et al., 2017</xref>; <xref ref-type="bibr" rid="ref50">Tabaran et al., 2017</xref>). However, incidence on antibiotic resistance of <italic>E. coli</italic> from raw milk in Northern China were very limited. Continuous monitoring of the antibiotic resistance and virulence type of <italic>E. coli</italic> could be necessary to evaluate <italic>E. coli</italic> risk in raw milk. Therefore, the objective of the work was to investigate the rate of <italic>E. coli</italic> strains isolated from raw milk in Northern China, and to characterize the antimicrobial susceptibility and key virulence genes of these strains.</p>
</sec>
<sec id="sec2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="sec3">
<title>Collection of Samples</title>
<p>In total, 195 raw milk were collected from 195 dairy farms from four cities, which was the major dairy-production cities of Northern China (herd size &#x2265;300, no clinical mastitis cow, milking frequency two or three times per day), from May to September in 2015 (average daily temperature &#x003E;20&#x00B0;C). There were 30 raw milk samples from Jinan, 40 samples from Harbin, 50 samples from Beijing, and 75 samples from Hohhot (<xref rid="fig1" ref-type="fig">Figure 1</xref>). The raw milk samples were collected from the top, middle, and bottom of bulk tank, mixed well, and then transferred into sterile bottles and transported to laboratory at 4&#x00B0;C immediately.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Map of sampling locations. In total, 195 samples were collected from Hohhot, Beijing, Harbin, and Jinan.</p>
</caption>
<graphic xlink:href="fmicb-12-730656-g001.tif"/>
</fig>
</sec>
<sec id="sec4">
<title>Isolation and Identification of <italic>E. coli</italic>
</title>
<p>Aliquots (25ml) of each sample were added to 225ml tryptic soy broth, and then incubated at 37&#x00B0;C for 16h with shaking for <italic>E. coli</italic> detection. The samples were placed onto Eosin Methylene Blue agar plates (Beijing Land Bridge Technology Ltd., Beijing, China). The agar plates were incubated at 37&#x00B0;C for 18&#x2013;24h. The presumptive colonies (typical blue-black appearance with a metallic green sheen) were picked. All the colonies were sub-cultured onto nutrient agar slants at 37&#x00B0;C for 16h, and then used for biochemical identification. The colonies initially identified as <italic>E. coli</italic> were examined by Voges-Proskauer negative, methyl-red positive and citrate negative. All isolates were stored at &#x2212;80&#x00B0;C until use.</p>
<p>All the presumptive colonies were confirmed by PCR on 16S rRNA gene detection (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). Genomic DNA was extracted with the InstaGene Matrix DNA extraction kit (Bio-Rad Laboratories), based on the manufacturer&#x2019;s instruction. PCR were performed with the EmeraldAmp Max PCR Master Mix kit (Takara, Dalian, China) followed the instructions of manufacturer. The primers were synthesized by GeneCreate Biological Engineering Co., Ltd. (Wuhan, China). Briefly, 25&#x03BC;l reactions, which contains 12.5&#x03BC;l of 2&#x00D7;EmeraldAmp Max PCR Master Mix kit, 10pmol of each primer, 1&#x03BC;l of extracted DNA and ultrapure water, were prepared. The amplification conditions were as follows: 94&#x00B0;C for 3min; 30cycles of 94&#x00B0;C for 30s, 55&#x00B0;C for 30s, and 72&#x00B0;C for 1min; and 72&#x00B0;C for 10min for a final extension step. Without genomic DNA as negative control and <italic>E. coli</italic> ATCC 25922 as positive control were included in all the PCR assays.</p>
</sec>
<sec id="sec5">
<title>Detection of Virulence Determinants</title>
<p>Seven virulence genes for each diarrheagenic <italic>E. coli</italic> were detected by PCR method: <italic>stx</italic>1 and <italic>stx</italic>2 for STEC, <italic>est</italic>A, <italic>est</italic>B, and <italic>elt</italic>B for ETEC, <italic>agg</italic>R for EAEC, <italic>bfp</italic> and <italic>eae</italic> for EPEC, and <italic>ipa</italic>H for EIEC. Amplified products were analyzed by agarose gel electrophoresis, and then visualized by SYBR Safe DNA Stain gel staining. All the primers were shown in <xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>.</p>
</sec>
<sec id="sec6">
<title>Antimicrobial Susceptibility Patterns</title>
<p>Antimicrobial patterns for recovered <italic>E. coli</italic> were determined by agar disk diffusion method (<xref ref-type="bibr" rid="ref7">CLSI, 2012</xref>). Gentamicin (10&#x03BC;g), tobramycin (10&#x03BC;g), streptomycin (10&#x03BC;g), amoxicillin-clavulanic acid (20/10&#x03BC;g), ampicillin (10&#x03BC;g), ciprofloxacin (5&#x03BC;g), azithromycin (15&#x03BC;g), cefoxitin (30&#x03BC;g), chloramphenicol (30&#x03BC;g), tetracycline (30&#x03BC;g), kanamycin (30&#x03BC;g), and trimethoprim-sulfamethoxazole (1.25/23.75&#x03BC;g) were used as antibiotic agents (Oxoid, Basingstoke, United Kingdom). <italic>Escherichia coli</italic> ATCC 25922 and <italic>Staphylococcus aureus</italic> ATCC 6538 were used as quality controls. The experiment was repeated three times.</p>
</sec>
<sec id="sec7">
<title>Antimicrobial Resistance Genes</title>
<p>Four &#x03B2;-lactamase resistance related genes (<italic>bla</italic><sub>CMY</sub>, <italic>bla</italic><sub>SHV</sub>, <italic>bla</italic><sub>CTX-M</sub>, and <italic>bla</italic><sub>TEM</sub>) and two tetracycline genes (<italic>tet</italic>A and <italic>tet</italic>B) were detected by multiplex PCR in <italic>E. coli</italic> strains (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). The amplification conditions were as follows: 95&#x00B0;C for 5min, 30cycles of 94&#x00B0;C for 30s, 63&#x00B0;C for 90s, and 72&#x00B0;C for 90s, and 72&#x00B0;C for 7min for a final extension step (<xref ref-type="bibr" rid="ref43">Ribeiro et al., 2016</xref>). <italic>Escherichia coli</italic> strains ATCC 25922 was used as a positive control in each run.</p>
</sec>
</sec>
<sec id="sec8" sec-type="results">
<title>Results</title>
<sec id="sec9">
<title>Prevalence of <italic>E. coli</italic>
</title>
<p>Out of 195 samples, 67 (34.4%) raw milk samples were positive for <italic>E. coli</italic>. Among these 67 raw milk samples, 67 <italic>E. coli</italic> strains were isolated, including 11 strains (36.7%) of 30 Jinan samples, 23 strains (30.7%) of 75 Hohhot samples, 16 strains (40.0%) of 40 Harbin samples, and 17 strains (34.0%) of 50 Beijing samples.</p>
</sec>
<sec id="sec10">
<title>Virulence Genes</title>
<p>About 20.9% of the isolates (14/67) harbored more than one virulence gene, as shown in <xref rid="tab1" ref-type="table">Table 1</xref>. The prevalence of EAEC, EIEC, EPEC, ETEC, and STEC was 0, 1.5, 4.5, 6, and 9%. Among the virulence genes detected, <italic>stx</italic>1 was the most prevalent gene (6/67, 9%), followed by <italic>eae</italic> (3/67, 4.5%), <italic>est</italic>B (2/67, 3%), <italic>stx2</italic> (1/67, 1.5%), <italic>est</italic>A (1/67, 1.5%), <italic>elt</italic> (1/67, 1.5%), and <italic>ipa</italic>H (1/67, 1.5%). The <italic>aggR</italic> and <italic>bfp</italic> were not discovered in any <italic>E. coli</italic> strains. Among six STEC isolates, there were three isolates (13.0%) from Hohhot, one isolate (9.1%) from Jinan, one isolate (6.3%) from Harbin, and one isolate (5.9%) from Beijing, respectively. There were two <italic>eae</italic>-positive isolates from Hohhot (8.7%), one <italic>eae</italic>-positive isolates from Jinan (9.1%), and no <italic>eae</italic>-positive isolate from Harbin and Beijing. Moreover, the prevalence of ETEC strains were 9.1% from Jinan, 6.3% from Harbin, 5.9% from Beijing, and 4.3% from Hohhot, respectively. For ETEC-related virulence genes, the prevalence of <italic>est</italic>B, <italic>est</italic>A, and <italic>elt</italic> genes were 3.0% (2/67), 1.5% (1/67), and 1.5% (1/67), and there were one <italic>elt</italic>-positive isolate from Jinan (9.1%), two <italic>est</italic>B-positive isolates from Harbin (6.3%) and Hohhot (4.3%), and one <italic>est</italic>A-positive isolate from Beijing (5.9%). The <italic>ipaH</italic> was detected in only one <italic>E. coli</italic> strain from Harbin.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Virulence genes in <italic>Escherichia coli</italic> from raw cow milk samples.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">Tapes of samples</th>
<th align="left" valign="top" rowspan="2">No. of strains</th>
<th align="left" valign="top" colspan="4">STEC (%)</th>
<th align="left" valign="top" colspan="4">ETEC (%)</th>
<th align="left" valign="top" colspan="3">EPEC (%)</th>
<th align="left" valign="top">EAEC (%)</th>
<th align="left" valign="top">EIEC (%)</th>
<th align="left" valign="top" rowspan="2">Total (%)</th>
</tr>
<tr>
<th align="left" valign="top">
<italic>stx</italic>1</th>
<th align="left" valign="top">
<italic>stx2</italic>
</th>
<th align="left" valign="top">
<italic>stx</italic>1&#x0026;<italic>stx2</italic>
</th>
<th align="left" valign="top">Total</th>
<th align="left" valign="top">
<italic>est</italic>A</th>
<th align="left" valign="top">
<italic>est</italic>B</th>
<th align="left" valign="top">
<italic>elt</italic>
</th>
<th align="left" valign="top">Total</th>
<th align="left" valign="top">
<italic>eae</italic>
</th>
<th align="left" valign="top">
<italic>bfp</italic>
</th>
<th align="left" valign="top">Total</th>
<th align="left" valign="top">
<italic>agg</italic>R</th>
<th align="left" valign="top">
<italic>ipa</italic>H</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">Hohhot</td>
<td align="center" valign="middle">23</td>
<td align="center" valign="middle">2 (8.7)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (4.3)</td>
<td align="center" valign="middle">3 (13.0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (4.3)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (4.3)</td>
<td align="center" valign="middle">2 (8.7)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="top">2 (8.7)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">6 (26.1)</td>
</tr>
<tr>
<td align="left" valign="middle">Jinan</td>
<td align="center" valign="middle">11</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="top">1 (9.1)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">3 (27.3)</td>
</tr>
<tr>
<td align="left" valign="middle">Harbin</td>
<td align="center" valign="middle">16</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="top">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">3 (18.8)</td>
</tr>
<tr>
<td align="left" valign="middle">Beijing</td>
<td align="center" valign="middle">17</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="top">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">2 (11.7)</td>
</tr>
<tr>
<td align="left" valign="middle">Total</td>
<td align="center" valign="middle">67</td>
<td align="center" valign="middle">5 (7.5)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (1.5)</td>
<td align="center" valign="middle">6 (9.0)</td>
<td align="center" valign="middle">1 (1.5)</td>
<td align="center" valign="middle">2 (3.0)</td>
<td align="center" valign="middle">1 (1.5)</td>
<td align="center" valign="middle">4 (6.0)</td>
<td align="center" valign="middle">3 (4.5)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="top">3 (4.5)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (1.5)</td>
<td align="center" valign="middle">14 (20.9)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec11">
<title>Antimicrobial Susceptibility Testing</title>
<p>The 67 isolates were exanimated by the disk diffusion method for susceptibility to 12 antibiotics. Antibiotic resistance on <italic>E. coli</italic> was observed to ampicillin (46.3%), amoxicillin-clavulanic acid (16.4%), tetracycline (13.4%), trimethoprim-sulfamethoxazole (13.4%), cefoxitin (11.9%), chloramphenicol (7.5%), kanamycin (7.5%), streptomycin (6.0%), tobramycin (4.5%), azithromycin (4.5%), ciprofloxacin (1.5%), and gentamicin (0; <xref rid="tab2" ref-type="table">Table 2</xref>). Among isolates from Hohhot, the resistant to ampicillin (47.8%) was the most frequently observed, followed by amoxicillin-clavulanic acid (17.4%), tetracycline (13.0%), and sulfamethoxazole-trimethoprim (13.0%), and all investigated strains were sensitive to tobramycin, streptomycin, ciprofloxacin, and gentamicin. Among isolates from Jinan, the resistance to ampicillin and cefoxitin (45.5%) was the most frequently observed, and all investigated strains were sensitive to tobramycin, streptomycin, and gentamicin. Among isolates from Harbin, the resistance to ampicillin (43.8%) was the most frequently observed, followed by amoxicillin-clavulanic acid, tetracycline, sulfamethoxazole-trimethoprim, chloramphenicol, streptomycin, and tobramycin (12.5%), and all investigated strains were sensitive to ciprofloxacin and gentamicin. Among isolates from Beijing, the resistance to ampicillin (47.1%) was the most frequently observed, followed by streptomycin (12.5%), amoxicillin-clavulanic acid (11.8%), tetracycline (11.8%), and sulfamethoxazole-trimethoprim (11.8%), and all the investigated <italic>E. coli</italic> isolates were sensitive to ciprofloxacin, azithromycin, and gentamicin. Moreover, 38 strains (71.6%) were resistant to at least one antibiotic, and 13 isolates (19.4%) were resistant to more than three kinds of antibiotics.</p>
<table-wrap position="float" id="tab2">
<label>Table 2</label>
<caption>
<p>Antibiotic resistance of strains.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">Antibiotics</th>
<th align="left" valign="top" colspan="5">No. (%) of positive strains</th>
</tr>
<tr>
<th align="left" valign="top">Hohhot (<italic>n</italic>=23)</th>
<th align="left" valign="top">Jinan (<italic>n</italic>=11)</th>
<th align="left" valign="top">Harbin (<italic>n</italic>=16)</th>
<th align="left" valign="top">Beijing (<italic>n</italic>=17)</th>
<th align="left" valign="top">Total (<italic>n</italic>=67)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">Ampicillin</td>
<td align="center" valign="middle">11 (47.8)</td>
<td align="center" valign="middle">5 (45.5)</td>
<td align="center" valign="middle">7 (43.8)</td>
<td align="center" valign="middle">8 (47.1)</td>
<td align="center" valign="middle">31 (46.3)</td>
</tr>
<tr>
<td align="left" valign="middle">Amoxicillin-clavulanic acid</td>
<td align="center" valign="middle">4 (17.4)</td>
<td align="center" valign="middle">3 (27.3)</td>
<td align="center" valign="middle">2 (12.5)</td>
<td align="center" valign="middle">2 (11.8)</td>
<td align="center" valign="middle">11 (16.4)</td>
</tr>
<tr>
<td align="left" valign="middle">Tetracycline</td>
<td align="center" valign="middle">3 (13.0)</td>
<td align="center" valign="middle">2 (18.2)</td>
<td align="center" valign="middle">2 (12.5)</td>
<td align="center" valign="middle">2 (11.8)</td>
<td align="center" valign="middle">9 (13.4)</td>
</tr>
<tr>
<td align="left" valign="middle">Sulfamethoxazole-trimethoprim</td>
<td align="center" valign="middle">3 (13.0)</td>
<td align="center" valign="middle">2 (18.2)</td>
<td align="center" valign="middle">2 (12.5)</td>
<td align="center" valign="middle">2 (11.8)</td>
<td align="center" valign="middle">9 (13.4)</td>
</tr>
<tr>
<td align="left" valign="middle">Cefoxitin</td>
<td align="center" valign="middle">1 (4.3)</td>
<td align="center" valign="middle">5 (45.5)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">8 (11.9)</td>
</tr>
<tr>
<td align="left" valign="middle">Chloramphenicol</td>
<td align="center" valign="middle">2 (8.7)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">2 (12.5)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">5 (7.5)</td>
</tr>
<tr>
<td align="left" valign="middle">Kanamycin</td>
<td align="center" valign="middle">2 (8.7)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">5 (7.5)</td>
</tr>
<tr>
<td align="left" valign="middle">Streptomycin</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">2 (12.5)</td>
<td align="center" valign="middle">2 (11.8)</td>
<td align="center" valign="middle">4 (6.0)</td>
</tr>
<tr>
<td align="left" valign="middle">Tobramycin</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">2 (12.5)</td>
<td align="center" valign="middle">1 (5.9)</td>
<td align="center" valign="middle">3 (4.5)</td>
</tr>
<tr>
<td align="left" valign="middle">Azithromycin</td>
<td align="center" valign="middle">1 (4.3)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">1 (6.3)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">3 (4.5)</td>
</tr>
<tr>
<td align="left" valign="middle">Ciprofloxacin</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (9.1)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">1 (1.5)</td>
</tr>
<tr>
<td align="left" valign="middle">Gentamicin</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
<td align="center" valign="middle">0 (0)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec12">
<title>Screening of Antibiotic Resistance Genes</title>
<p>The &#x03B2;-lactamase-encoding genes results were presented in <xref rid="tab3" ref-type="table">Table 3</xref>. The prevalence of &#x03B2;-lactamase-encoding genes were 34.3% in 67 <italic>E. coli</italic> isolates and 45% in 40 &#x03B2;-lactam resistance <italic>E. coli</italic> isolates. The overall prevalences of <italic>bla</italic><sub>SHV</sub>, <italic>bla</italic><sub>TEM</sub>, <italic>bla</italic><sub>CMY</sub>, and <italic>bla</italic><sub>CTX-M</sub> genes among <italic>E. coli</italic> isolates, which was narrow spectrum extended-spectrum &#x03B2;-lactamase-encoding genes, &#x03B2;-lactamase-encoding genes, AmpC, and &#x03B2;-lactamase-encoding genes, were 1.5, 1.5, 10.4, and 20.9%, respectively. In total, 71.4% of the isolates, which possessed the <italic>bla<sub>TEM</sub>
</italic> gene, were resistant to ampicillin. Around 57.1% of <italic>bla</italic><sub>CMY</sub> positive isolates were resistant to amoxicillin-clavulanic acid. Five (7.5%) isolates possessing <italic>bla</italic><sub>TEM</sub> or <italic>bla</italic><sub>CMY</sub> did not suggest &#x03B2;-lactamase antibiotic resistance.</p>
<table-wrap position="float" id="tab3">
<label>Table 3</label>
<caption>
<p>&#x03B2;-lactamase genotypes identified in &#x03B2;-lactam-resistant <italic>E. coli</italic>.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" rowspan="2">Antibiotic</th>
<th align="left" valign="top" rowspan="2">No. of positive strains</th>
<th align="left" valign="top" colspan="4">No. of positive strains</th>
<th align="left" valign="top" rowspan="2">None</th>
</tr>
<tr>
<th align="left" valign="top">
<italic>bla</italic><sub>SHV</sub>
</th>
<th align="left" valign="top">
<italic>bla</italic><sub>TEM</sub>
</th>
<th align="left" valign="top">
<italic>bla</italic><sub>CMY</sub>
</th>
<th align="left" valign="top">
<italic>bla</italic><sub>CTX-M</sub>
</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">Ampicillin</td>
<td align="center" valign="middle">26</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">8</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">17</td>
</tr>
<tr>
<td align="left" valign="middle">Amoxicillin-clavulanic acid</td>
<td align="center" valign="middle">4</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">2</td>
</tr>
<tr>
<td align="left" valign="middle">Cefoxitin</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">2</td>
</tr>
<tr>
<td align="left" valign="middle">Ampicillin, amoxicillin-clavulanic acid</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">1</td>
</tr>
<tr>
<td align="left" valign="middle">Amoxicillin-clavulanic acid, cefoxitin</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td align="left" valign="middle">Ampicillin, amoxicillin-clavulanic acid, and cefoxitin</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td align="left" valign="middle">None</td>
<td align="center" valign="middle">27</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">3</td>
<td align="center" valign="middle">2</td>
<td align="center" valign="middle">0</td>
<td align="center" valign="middle">22</td>
</tr>
<tr>
<td align="left" valign="middle">Total</td>
<td align="center" valign="middle">67</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">14</td>
<td align="center" valign="middle">7</td>
<td align="center" valign="middle">1</td>
<td align="center" valign="middle">44</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Moreover, the presence of the <italic>tet</italic> genes, which were conferring resistance to tetracycline, were confirmed in seven tetracycline-resistance strains. None of the studied strains possessed <italic>tet</italic>A (<xref rid="tab4" ref-type="table">Table 4</xref>).</p>
<table-wrap position="float" id="tab4">
<label>Table 4</label>
<caption>
<p>Antimicrobial resistance genes among <italic>E. coli</italic>.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th align="left" valign="top" colspan="2">Phenotype</th>
<th align="left" valign="top" colspan="2">Genotype</th>
</tr>
<tr>
<th align="left" valign="top">Antimicrobial agents</th>
<th align="left" valign="top">No. of positive strains</th>
<th align="left" valign="top">Resistant genes or genetic elements studied</th>
<th align="left" valign="top">No. of positive strains</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="middle">Penicillin G</td>
<td align="center" valign="middle">47</td>
<td align="left" valign="middle">
<italic>blac</italic>Z</td>
<td align="center" valign="middle">30</td>
</tr>
<tr>
<td align="left" valign="middle">Cefoxitin</td>
<td align="center" valign="middle">23</td>
<td align="left" valign="middle">
<italic>cfx</italic>A</td>
<td align="center" valign="middle">13</td>
</tr>
<tr>
<td align="left" valign="middle">Tobramycin</td>
<td align="center" valign="middle">3</td>
<td align="left" valign="middle">
<italic>ant(4')</italic>-Ia</td>
<td align="center" valign="middle">2</td>
</tr>
<tr>
<td align="left" valign="middle">Gentamicin</td>
<td align="center" valign="middle">7</td>
<td align="left" valign="middle">
<italic>aac</italic>6<italic>'</italic>-<italic>aph</italic>2''</td>
<td align="center" valign="middle">7</td>
</tr>
<tr>
<td align="left" valign="middle">Chloramphenicol</td>
<td align="center" valign="middle">4</td>
<td align="left" valign="middle">
<italic>fex</italic>A</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>cat</italic>A</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td align="left" valign="middle">Tetracycline</td>
<td align="center" valign="middle">7</td>
<td align="left" valign="middle">
<italic>tet</italic>K</td>
<td align="center" valign="middle">1</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>tet</italic>K+<italic>tet</italic>L</td>
<td align="center" valign="middle">2</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>tet</italic>M</td>
<td align="center" valign="middle">3</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>tet</italic>M+<italic>tet</italic>L</td>
<td align="center" valign="middle">1</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>tet</italic>A</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td align="left" valign="middle">Erythromycin</td>
<td align="center" valign="middle">25</td>
<td align="left" valign="middle">
<italic>erm</italic>B</td>
<td align="center" valign="middle">3</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>erm</italic>B+<italic>erm</italic>C</td>
<td align="center" valign="middle">3</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>erm</italic>C</td>
<td align="center" valign="middle">4</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>erm</italic>C+<italic>erm</italic>A</td>
<td align="center" valign="middle">1</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>erm</italic>C+<italic>msr</italic>A</td>
<td align="center" valign="middle">2</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>erm</italic>C+<italic>msr</italic>B</td>
<td align="center" valign="middle">1</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>msr</italic>A</td>
<td align="center" valign="middle">1</td>
</tr>
<tr>
<td/>
<td/>
<td align="left" valign="middle">
<italic>erm</italic>A and/or <italic>msr</italic>B</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td align="left" valign="middle">Kanamycin</td>
<td align="center" valign="middle">8</td>
<td align="left" valign="middle">
<italic>ant(4')</italic>-Ia</td>
<td align="center" valign="middle">8</td>
</tr>
<tr>
<td align="left" valign="middle">Lincomycin</td>
<td align="center" valign="middle">28</td>
<td align="left" valign="middle">
<italic>lin</italic>A</td>
<td align="center" valign="middle">5</td>
</tr>
<tr>
<td align="left" valign="middle">Oxacillin</td>
<td align="center" valign="middle">16</td>
<td align="left" valign="middle">
<italic>mec</italic>A</td>
<td align="center" valign="middle">16</td>
</tr>
<tr>
<td align="left" valign="middle">Streptomycin</td>
<td align="center" valign="middle">5</td>
<td align="left" valign="middle">
<italic>ant(6)</italic>-Ia</td>
<td align="center" valign="middle">0</td>
</tr>
<tr>
<td align="left" valign="middle">Quinupristin-Dalfopristin</td>
<td align="center" valign="middle">2</td>
<td align="left" valign="middle">
<italic>vga</italic>A and/or <italic>vga</italic>B</td>
<td align="center" valign="middle">0</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
</sec>
<sec id="sec13" sec-type="discussions">
<title>Discussion</title>
<p>In this research, 34.4% (67/195) of samples were positive for <italic>E. coli</italic> in raw milk. These results are significantly lower than that in previous studies. The incidence of <italic>E. coli</italic> in raw milk in India was 81.1% (<xref ref-type="bibr" rid="ref4">Bhoomika et al., 2016</xref>), 75% in Bangladesh (<xref ref-type="bibr" rid="ref25">Islam et al., 2016</xref>), 64.5% in Malaysia (<xref ref-type="bibr" rid="ref27">Jayarao and Henning, 2001</xref>), and 45% in Northern China (<xref ref-type="bibr" rid="ref30">Lan et al., 2017</xref>). In contrast, a much lower incidence (22.4%) of <italic>E. coli</italic> was discovered in raw milk in Sharkia Governorate (<xref ref-type="bibr" rid="ref1">Awadallah et al., 2016</xref>). Moreover, our results are comparable with the findings of <xref ref-type="bibr" rid="ref39">Ntuli et al. (2016)</xref>, who reported 36% prevalence rate in bulk milk in South Africa, and <xref ref-type="bibr" rid="ref47">Sharma et al. (2015)</xref>, who reported 35.63% occurrence rate in raw milk in the Jaipur city of Rajasthan. Overall, the results indicated that <italic>E. coli</italic> is a common strain in raw milk collected from dairy herds of Northern China. The high prevalence of <italic>E. coli</italic> in raw milk and dairy products is a cause of concern because it is related to contamination from fecal sources and the consequent risk of enteric pathogenic microorganisms in food (<xref ref-type="bibr" rid="ref41">Ombarak et al., 2016</xref>).</p>
<p>An important factor of <italic>E. coli</italic> infections is virulence factors. When <italic>E. coli</italic> carried some virulence genes, they could be potentially harmful to public consumers (<xref ref-type="bibr" rid="ref22">Hinthong et al., 2017</xref>). In the study, 20.9% (14/67) of the tested raw milk possessing more than one virulence gene tested, may carried potentially pathogenic <italic>E. coli</italic>, as shown in <xref rid="tab3" ref-type="table">Table 3</xref>. STEC, cause a life-threatening sequel, such as neurological disorder and hemolytic syndrome or HUS (<xref ref-type="bibr" rid="ref28">Kaper et al., 2004</xref>), was found to be the most common pathogenic <italic>E. coli</italic> strain in raw milk. It has been reported that the virulence genes of STEC isolates were commonly implicated in many foodborne STEC outbreaks in the world (<xref ref-type="bibr" rid="ref3">Beutin and Fach, 2015</xref>). In this study, the most common virulence genes in raw milk samples in Northern China were <italic>stx</italic> genes. The result was in agreement with <xref ref-type="bibr" rid="ref49">Suojala et al. (2011)</xref>, who reported the STEC (<italic>stx</italic>-positive isolates) was the most common <italic>E. coli</italic> type of raw milk with subclinical mastitis in Southern Finland, and by <xref ref-type="bibr" rid="ref29">Lambertini et al. (2015)</xref>, who found that the most frequently detected gene in raw milk of the United States northeastern was <italic>stx</italic>1. However, STEC or <italic>stx</italic> factors has been detected in the farms of United States and European at a low prevalence (<xref ref-type="bibr" rid="ref26">Jayarao et al., 2006</xref>; <xref ref-type="bibr" rid="ref42">Pradel et al., 2008</xref>; <xref ref-type="bibr" rid="ref54">Van Kessel et al., 2011</xref>; <xref ref-type="bibr" rid="ref6">Claeys et al., 2013</xref>; <xref ref-type="bibr" rid="ref41">Ombarak et al., 2016</xref>).</p>
<p>Enteropathogenic <italic>E. coli</italic> is responsible for diarrhea in both developing and developed countries. As an important foodborne pathogen, EPEC has high isolation rate in retail foods in China (<xref ref-type="bibr" rid="ref800">Zhang et al., 2016</xref>). EPEC were isolated from many animals, such as cattle, goat, sheep, chicken, gull, and pigeon (<xref ref-type="bibr" rid="ref17">Gomez-Aldapa et al., 2016</xref>). In the study, three strains were <italic>eae</italic> genes-positive and <italic>bfp</italic> gene-negative, which could be classified as EPEC. <xref ref-type="bibr" rid="ref8">Cort&#x00E9;s et al. (2005)</xref> and <xref ref-type="bibr" rid="ref17">Gomez-Aldapa et al. (2016)</xref> found that atypical EPEC strains were found in raw milk in Egypt, Saudi Arabia, and Slovakia. However, there is no report on the <italic>eae</italic>-positive <italic>E. coli</italic> strains found in mastitis cows in Iran and Thailand (<xref ref-type="bibr" rid="ref16">Ghanbarpour and Oswald, 2010</xref>; <xref ref-type="bibr" rid="ref22">Hinthong et al., 2017</xref>). Moreover, an increasing frequency of <italic>eae</italic>-negative isolates were postulated to have other putative adherence and virulence associated factors (<xref ref-type="bibr" rid="ref17">Gomez-Aldapa et al., 2016</xref>). ETEC strains are usually transmitted by contaminated food. In the study, EPEC and ETEC strains were isolated from Hohhot and Jinan. EPEC/ETEC hybrid isolates were related to EPEC strain, and appeared to have acquired virulence genes by horizontal gene transfer (<xref ref-type="bibr" rid="ref20">Hazen et al., 2017</xref>).</p>
<p>In the study, antimicrobial resistance was most frequently observed to ampicillin (46.3%). The susceptibility to amoxicillin can be predicted by antimicrobial resistance to ampicillin (<xref ref-type="bibr" rid="ref7">CLSI, 2012</xref>). So the tested <italic>E. coli</italic> isolates may showed a high resistance to amoxicillin. <xref ref-type="bibr" rid="ref37">Nam et al. (2009)</xref> reported that 32.2% <italic>E. coli</italic> strains from mastitis cow were resistant to ampicillin. However, the resistant rates in the study were much higher than those in South Korea from 2012 to 2015 (<xref ref-type="bibr" rid="ref51">Tark et al., 2016</xref>) and in Northern Colorado (<xref ref-type="bibr" rid="ref35">McConnel et al., 2016</xref>). Antibiotic susceptibility of <italic>E. coli</italic> was more important on choosing a suitable antibiotic for mastitis (<xref ref-type="bibr" rid="ref55">Wang et al., 2016</xref>). The information of antibiotic use for dairy in Northern China has been investigated in our previous survey. Ampicillin was commonly used in dairy mastitis therapy (<xref ref-type="bibr" rid="ref33">Liu et al., 2017</xref>). So, ampicillin is not a suitable treatment for mastitis caused by <italic>E. coli</italic> in Northern China.</p>
<p>In our previous survey, we found that five antibiotics (penicillin, ciprofloxacin, sulfamethoxazole-trimethoprim, streptomycin, and gentamicin) were commonly used in mastitis cow. In the study, most of tested strains showed an obvious antimicrobial resistance to ciprofloxacin, sulfamethoxazole-trimethoprim, and streptomycin. These results also indicated that there was a correlation between antibiotic use and antimicrobial resistance.</p>
<p>In the study, there were four &#x03B2;-lactamase resistance genes detected. The &#x03B2;-lactamase-encoding genes prevalence was 34.3% in 67 <italic>E. coli</italic> isolates. &#x03B2;-lactamase resistance genes, such as <italic>bla</italic><sub>CMY</sub>, <italic>bla</italic><sub>SHV</sub>, <italic>bla</italic><sub>CTX-M</sub>, and <italic>bla</italic><sub>TEM</sub> were detected in nine non-pathogenic <italic>E. coli</italic> isolates. So non-pathogenic <italic>E. coli</italic> can serve as an antibiotic resistance reservoir and could possibly transfer genes to other pathogenic <italic>E. coli</italic> strains, which can pose a threat to mastitis management programs of farm (<xref ref-type="bibr" rid="ref24">Hu et al., 2016</xref>). The rate of <italic>bla</italic><sub>CTX-M,</sub> <italic>bla</italic><sub>CMY</sub>, <italic>bla</italic><sub>TEM</sub>, and <italic>bla</italic><sub>SHV</sub> genes among <italic>E. coli</italic> was 1.5, 1.5, 10.4, and 20.9% in the study, respectively. The <italic>bla</italic><sub>TEM</sub> and <italic>bla</italic><sub>CMY</sub> genes were the most common, which is similar to several previous studies (<xref ref-type="bibr" rid="ref38">Navajas-Benito et al., 2016</xref>; <xref ref-type="bibr" rid="ref18">Gomi et al., 2017</xref>; <xref ref-type="bibr" rid="ref22">Hinthong et al., 2017</xref>). The cephalosporins treatment in mastitis cattle also raised the proportion of <italic>bla</italic><sub>TEM</sub> in milk samples at the period of withdrawal (<italic>p</italic>&#x003C;0.05; <xref ref-type="bibr" rid="ref11">Dong et al., 2021</xref>). The <italic>bla</italic><sub>CTX-M</sub>, which was the most important ESBL-related gene, it was associated with the geographic area (<xref ref-type="bibr" rid="ref48">Su et al., 2016</xref>). However, <italic>bla</italic><sub>CTX-M</sub> was the most popular gene in Japan, United Kingdom, France, Netherlands, and Germany (<xref ref-type="bibr" rid="ref700">Dahmen et al., 2013</xref>; <xref ref-type="bibr" rid="ref40">Ohnishi et al., 2013</xref>; <xref ref-type="bibr" rid="ref52">Timofte et al., 2014</xref>; <xref ref-type="bibr" rid="ref15">Freitag et al., 2016</xref>; <xref ref-type="bibr" rid="ref46">Santman-Berends et al., 2016</xref>).</p>
<p>Around 11.8% of <italic>E. coli</italic> stains showed resistance to tetracycline in the study. However, <xref ref-type="bibr" rid="ref48">Su et al. (2016)</xref> reported that the tetracycline-resistance prevalence was 51%. <xref ref-type="bibr" rid="ref38">Navajas-Benito et al. (2016)</xref> reported that antimicrobial resistance for tetracycline was detected in 19.2% of <italic>E. coli</italic> strains, which recovered from air and its surroundings in Spain. Antimicrobial resistance genes to tetracycline were tested in all the tetracycline-resistant isolates, and three tetracycline-resistant isolates harbored one tetracycline resistance gene <italic>tet</italic>B, which was the most frequent gene, and the studied <italic>E. coli</italic> did not possess <italic>tet</italic>A. However, <xref ref-type="bibr" rid="ref18">Gomi et al. (2017)</xref> found that the prevalent of <italic>tet</italic>A was more than <italic>tet</italic>B in <italic>E. coli</italic> isolates. It was reported that one representative <italic>E. coli</italic> strain (No. JXLQYF114666) contained nine ARGs including <italic>aph</italic>(3'')-Ib, <italic>bla</italic><sub>TEM-1B</sub>, <italic>bla</italic><sub>CMY-2</sub>, <italic>aph</italic>(6)-Id, <italic>mdf</italic>A, <italic>sul</italic>2, <italic>tet</italic>B, <italic>cat</italic>A2, and <italic>dfrA14</italic>, which result in resistance to seven important antibiotics classes (<xref ref-type="bibr" rid="ref34">Liu et al., 2020</xref>). Moreover, the phenotype-genotype discrepancies on the tetracycline-resistant <italic>E. coli</italic> were observed in the study. However, resistance genotypes on tetracycline, gentamicin, kanamycin, and oxacillin correlated well with resistance phenotypes in <italic>E. coli</italic> and <italic>S. aureus</italic> (<xref ref-type="bibr" rid="ref18">Gomi et al., 2017</xref>). Therefore, it was still necessary to fully account of testing phenotypic susceptibility for resistance (<xref ref-type="bibr" rid="ref56">Zhao et al., 2015</xref>). Further research should be carried out to analyze the genetic characteristics on antibiotic resistance by whole-genome approach, which may explain the phenotype-genotype discrepancies observed for many strains.</p>
</sec>
<sec id="sec14" sec-type="conclusions">
<title>Conclusion</title>
<p>In conclusion, the antibiotic resistance on <italic>E. coli</italic> isolated from raw milk in Northern China was assessed for the first time. Our data indicated that <italic>E. coli</italic> isolates were widely present in raw milk samples in Northern China. A total 20.9% of the tested <italic>E. coli</italic> possessed one or more virulence genes, which showed a potential pathogenicity. <italic>Escherichia coli</italic> strains exhibited different levels of antimicrobial resistance, except gentamicin. Ampicillin should not be a suitable treatment of dairy herds for mastitis by <italic>E. coli</italic> in Northern China. Majority of <italic>E. coli</italic> were multiple-antibiotic resistant and co-carried many virulence genes, and it may pose great potential risk to public health. The possibility of transferring and transmitting resistance genes, between non-pathogenic and pathogenic <italic>E. coli</italic> isolates, should be evaluated in further studies.</p>
</sec>
<sec id="sec15" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">Supplementary Material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="sec16">
<title>Author Contributions</title>
<p>HL, LM, and LD designed and performed the research. YZ helped with the data analysis. JW gave advices to the researchers. NZ gave the opinions on the research design. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="sec17" sec-type="funding-information">
<title>Funding</title>
<p>This research was supported by China Agriculture Research System of MOF and MARA, The Agricultural Science and Technology Innovation Program (ASTIP-IAS12), The Scientific Research Project for Major Achievements of The Agricultural Science and Technology Innovation Program (CAAS-ZDXT2019004) and Project of Risk Assessment on Raw Milk (GJFP2019026).</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec18" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="sec19" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fmicb.2021.730656/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fmicb.2021.730656/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.DOCX" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="ref1"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Awadallah</surname> <given-names>M. A.</given-names></name> <name><surname>Ahmed</surname> <given-names>H. A.</given-names></name> <name><surname>Merwad</surname> <given-names>A. M.</given-names></name> <name><surname>Selim</surname> <given-names>M. A.</given-names></name></person-group> (<year>2016</year>). <article-title>Occurrence, genotyping, Shiga toxin genes and associated risk factors of <italic>E. coli</italic> isolated from dairy farms, handlers and milk consumers</article-title>. <source>Vet. J.</source> <volume>217</volume>, <fpage>83</fpage>&#x2013;<lpage>88</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.tvjl.2016.09.014</pub-id>, PMID: <pub-id pub-id-type="pmid">27810218</pub-id></citation></ref>
<ref id="ref3"><citation citation-type="book"><person-group person-group-type="author"><name><surname>Beutin</surname> <given-names>L.</given-names></name> <name><surname>Fach</surname> <given-names>P.</given-names></name></person-group> (<year>2015</year>). &#x201C;<article-title>Detection of Shiga toxin-producing <italic>Escherichia coli</italic> from nonhuman sources and strain typing,</article-title>&#x201D; in <source>Enterohemorrhagic <italic>Escherichia coli</italic> and Other Shiga Toxin-Producing <italic>E. coli</italic></source> (<publisher-loc>Washington, DC</publisher-loc>: <publisher-name>American Society of Microbiology</publisher-name>), <fpage>299</fpage>&#x2013;<lpage>319</lpage>.</citation></ref>
<ref id="ref4"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Bhoomika</surname></name> <name><surname>Sanjay</surname> <given-names>S.</given-names></name> <name><surname>Anil</surname> <given-names>P.</given-names></name> <name><surname>Eknath</surname> <given-names>G. N.</given-names></name></person-group> (<year>2016</year>). <article-title>Occurrence and characteristics of extended-spectrum &#x03B2;-lactamases producing <italic>Escherichia coli</italic> in foods of animal origin and human clinical samples in Chhattisgarh, India</article-title>. <source>Vet. World</source> <volume>9</volume>, <fpage>996</fpage>&#x2013;<lpage>1000</lpage>. doi: <pub-id pub-id-type="doi">10.14202/vetworld.2016.996-1000</pub-id>, PMID: <pub-id pub-id-type="pmid">27733802</pub-id></citation></ref>
<ref id="ref6"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Claeys</surname> <given-names>W. L.</given-names></name> <name><surname>Cardoen</surname> <given-names>S.</given-names></name> <name><surname>Daube</surname> <given-names>G.</given-names></name> <name><surname>Block</surname> <given-names>J. D.</given-names></name> <name><surname>Herman</surname> <given-names>L.</given-names></name></person-group> (<year>2013</year>). <article-title>Raw or heated cow milk consumption: review of risks and benefits</article-title>. <source>Food Control</source> <volume>31</volume>, <fpage>251</fpage>&#x2013;<lpage>262</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.foodcont.2012.09.035</pub-id></citation></ref>
<ref id="ref7"><citation citation-type="book"><person-group person-group-type="author"><collab id="coll1">CLSI</collab></person-group> (<year>2012</year>). <source>Performance Standards for Antimicrobial Susceptibility Testing. Document M100&#x2013;S22</source>. <publisher-loc>Wayne, PA</publisher-loc>: <publisher-name>Clinical and Laboratory Standards Institute (CLSI)</publisher-name>.</citation></ref>
<ref id="ref8"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Cort&#x00E9;s</surname> <given-names>C.</given-names></name> <name><surname>Fuente</surname> <given-names>R.</given-names></name> <name><surname>Blanco</surname> <given-names>J.</given-names></name> <name><surname>Blanco</surname> <given-names>M.</given-names></name> <name><surname>Blanco</surname> <given-names>J. E.</given-names></name> <name><surname>Dhabi</surname> <given-names>G.</given-names></name> <etal/></person-group>. (<year>2005</year>). <article-title>Serotypes, virulence genes and intimin types of verotoxin-producing <italic>Escherichia coli</italic> and enteropathogenic <italic>E. coli</italic> isolated from healthy dairy goats in Spain</article-title>. <source>Vet. Microbiol.</source> <volume>110</volume>, <fpage>67</fpage>&#x2013;<lpage>76</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetmic.2005.06.009</pub-id>, PMID: <pub-id pub-id-type="pmid">16054307</pub-id></citation></ref>
<ref id="ref700"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dahmen</surname> <given-names>S.</given-names></name> <name><surname>M&#x00E9;tayer</surname> <given-names>V.</given-names></name> <name><surname>Gay</surname> <given-names>E.</given-names></name> <name><surname>Madec</surname> <given-names>J. Y.</given-names></name> <name><surname>Haenni</surname> <given-names>M.</given-names></name></person-group> (<year>2013</year>). <article-title>Characterization of extended-spectrum beta-lactamase (esbl)-carrying plasmids and clones of enterobacteriaceae causing cattle mastitis in France</article-title>. <source>Vet. Microbiol.</source> <volume>162</volume>, <fpage>793</fpage>&#x2013;<lpage>799</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetmic.2012.10.015</pub-id>, PMID: <pub-id pub-id-type="pmid">20153069</pub-id></citation></ref>
<ref id="ref9"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Da Silva</surname> <given-names>G.</given-names></name> <name><surname>Mendon&#x00E7;a</surname> <given-names>N.</given-names></name></person-group> (<year>2012</year>). <article-title>Association between antimicrobial resistance and virulence in <italic>Escherichia coli</italic></article-title>. <source>Virulence</source> <volume>3</volume>, <fpage>18</fpage>&#x2013;<lpage>28</lpage>. doi: <pub-id pub-id-type="doi">10.4161/viru.3.1.18382</pub-id></citation></ref>
<ref id="ref11"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Dong</surname> <given-names>L.</given-names></name> <name><surname>Meng</surname> <given-names>L.</given-names></name> <name><surname>Liu</surname> <given-names>H.</given-names></name> <name><surname>Wu</surname> <given-names>H.</given-names></name> <name><surname>Hu</surname> <given-names>H.</given-names></name> <name><surname>Zheng</surname> <given-names>N.</given-names></name> <etal/></person-group>. (<year>2021</year>). <article-title>Effect of therapeutic administration of &#x03B2;-lactam antibiotics on the bacterial community and antibiotic resistance patterns in milk</article-title>. <source>J. Dairy Sci.</source> <volume>104</volume>, <fpage>7018</fpage>&#x2013;<lpage>7025</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2020-20025</pub-id>, PMID: <pub-id pub-id-type="pmid">33741154</pub-id></citation></ref>
<ref id="ref12"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Douellou</surname> <given-names>T.</given-names></name> <name><surname>Delannoy</surname> <given-names>S.</given-names></name> <name><surname>Ganet</surname> <given-names>S.</given-names></name> <name><surname>Mariani-Kurkdjian</surname> <given-names>P.</given-names></name> <name><surname>Fach</surname> <given-names>P.</given-names></name> <name><surname>Loukiadis</surname> <given-names>E.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Shiga toxin-producing <italic>Escherichia coli</italic> strains isolated from dairy products &#x2013; genetic diversity and virulence gene profiles</article-title>. <source>Int. J. Food Microbiol.</source> <volume>232</volume>, <fpage>52</fpage>&#x2013;<lpage>62</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijfoodmicro.2016.04.032</pub-id>, PMID: <pub-id pub-id-type="pmid">27257743</pub-id></citation></ref>
<ref id="ref13"><citation citation-type="journal"><person-group person-group-type="author"><collab id="coll2">EFSA</collab></person-group> (<year>2015</year>). <article-title>Scientific opinion on the public health risks related to the consumption of raw drinking milk</article-title>. <source>EFSA J.</source> <volume>13</volume>:<fpage>3940</fpage>. doi: <pub-id pub-id-type="doi">10.2903/j.efsa.2015.4139</pub-id>, PMID: <pub-id pub-id-type="pmid">32313571</pub-id></citation></ref>
<ref id="ref14"><citation citation-type="journal"><person-group person-group-type="author"><collab id="coll3">EFSA-ECDC</collab></person-group> (<year>2012</year>). <article-title>Scientific report of EFSA and ECDC: the European Union summary report on trents and sources of zoonoses, agents and food-borne outbreaks in 2010</article-title>. <source>EFSA J.</source> <volume>10</volume>:<fpage>2597</fpage>. doi: <pub-id pub-id-type="doi">10.2903/j.efsa.2012.2669</pub-id>, PMID: <pub-id pub-id-type="pmid">32313568</pub-id></citation></ref>
<ref id="ref15"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Freitag</surname> <given-names>C.</given-names></name> <name><surname>Michael</surname> <given-names>G. B.</given-names></name> <name><surname>Kadlec</surname> <given-names>K.</given-names></name> <name><surname>Hassel</surname> <given-names>M.</given-names></name> <name><surname>Schwarz</surname> <given-names>S.</given-names></name></person-group> (<year>2016</year>). <article-title>Detection of plasmid-borne extended-spectrum &#x03B2;-lactamase (ESBL) genes in <italic>Escherichia coli</italic> isolates from bovine mastitis</article-title>. <source>Vet. Microbiol.</source> <volume>200</volume>, <fpage>151</fpage>&#x2013;<lpage>156</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetmic.2016.08.010</pub-id>, PMID: <pub-id pub-id-type="pmid">27566885</pub-id></citation></ref>
<ref id="ref16"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ghanbarpour</surname> <given-names>R.</given-names></name> <name><surname>Oswald</surname> <given-names>E.</given-names></name></person-group> (<year>2010</year>). <article-title>Phylogenetic distribution of virulence genes in <italic>Escherichia coli</italic> isolated from bovine mastitis in Iran</article-title>. <source>Res. Vet. Sci.</source> <volume>88</volume>, <fpage>6</fpage>&#x2013;<lpage>10</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.rvsc.2009.06.003</pub-id>, PMID: <pub-id pub-id-type="pmid">19580980</pub-id></citation></ref>
<ref id="ref17"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gomez-Aldapa</surname> <given-names>C. A.</given-names></name> <name><surname>Segovia-Cruz</surname> <given-names>J. A.</given-names></name> <name><surname>Cerna-Cortes</surname> <given-names>J. F.</given-names></name> <name><surname>Rangel-Vargas</surname> <given-names>E.</given-names></name> <name><surname>Salas-Rangel</surname> <given-names>L. P.</given-names></name> <name><surname>Gutierrez-Alcantara</surname> <given-names>E. J.</given-names></name></person-group> (<year>2016</year>). <article-title>Prevalence and behavior of multidrug-resistant Shiga toxin-producing <italic>Escherichia coli</italic>, enteropathogenic <italic>E. coli</italic> and enterotoxigenic <italic>E. coli</italic> on coriander</article-title>. <source>Food Microbiol.</source> <volume>59</volume>, <fpage>97</fpage>&#x2013;<lpage>103</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.fm.2016.05.014</pub-id>, PMID: <pub-id pub-id-type="pmid">27375249</pub-id></citation></ref>
<ref id="ref18"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gomi</surname> <given-names>R.</given-names></name> <name><surname>Matsuda</surname> <given-names>T.</given-names></name> <name><surname>Matsumura</surname> <given-names>Y.</given-names></name> <name><surname>Yamamoto</surname> <given-names>M.</given-names></name> <name><surname>Tanaka</surname> <given-names>M.</given-names></name> <name><surname>Ichiyama</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Whole-genome analysis of antimicrobial-resistant and extraintestinal pathogenic <italic>Escherichia coli</italic> in river water</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>78</volume>:<fpage>e02703-16</fpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.02703-16</pub-id>, PMID: <pub-id pub-id-type="pmid">27986723</pub-id></citation></ref>
<ref id="ref19"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Gonggrijp</surname> <given-names>M. A.</given-names></name> <name><surname>Santman-Berends</surname> <given-names>I.</given-names></name> <name><surname>Heuvelink</surname> <given-names>A. E.</given-names></name> <name><surname>Buter</surname> <given-names>G. J.</given-names></name> <name><surname>Lam</surname> <given-names>T.</given-names></name></person-group> (<year>2016</year>). <article-title>Prevalence and risk factors for extended-spectrum &#x03B2;-lactamase- and ampc-producing <italic>Escherichia coli</italic> in dairy farms</article-title>. <source>J. Dairy Sci.</source> <volume>99</volume>, <fpage>9001</fpage>&#x2013;<lpage>9013</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2016-11134</pub-id>, PMID: <pub-id pub-id-type="pmid">27638264</pub-id></citation></ref>
<ref id="ref20"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hazen</surname> <given-names>T. H.</given-names></name> <name><surname>Michalski</surname> <given-names>J.</given-names></name> <name><surname>Luo</surname> <given-names>Q. W.</given-names></name> <name><surname>Shetty</surname> <given-names>A. C.</given-names></name> <name><surname>Daugherty</surname> <given-names>S. C.</given-names></name> <name><surname>Fleckenstein</surname> <given-names>J. M.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Comparative genomics and transcriptomics of <italic>Escherichia coli</italic> isolates carrying virulence factors of both enteropathogenic and enterotoxigenic <italic>E. coli</italic></article-title>. <source>Sci. Rep.</source> <volume>7</volume>:<fpage>3513</fpage>. doi: <pub-id pub-id-type="doi">10.1038/s41598-017-03489-z</pub-id>, PMID: <pub-id pub-id-type="pmid">28615618</pub-id></citation></ref>
<ref id="ref21"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hernandes</surname> <given-names>R. T.</given-names></name> <name><surname>Elias</surname> <given-names>W. P.</given-names></name> <name><surname>Vieira</surname> <given-names>M. A.</given-names></name> <name><surname>Gomes</surname> <given-names>T. A.</given-names></name></person-group> (<year>2009</year>). <article-title>An overview of a typical enteropathogenic <italic>Escherichia coli</italic></article-title>. <source>FEMS Microbiol. Lett.</source> <volume>297</volume>, <fpage>137</fpage>&#x2013;<lpage>149</lpage>. doi: <pub-id pub-id-type="doi">10.1111/j.1574-6968.2009.01664.x</pub-id>, PMID: <pub-id pub-id-type="pmid">19527295</pub-id></citation></ref>
<ref id="ref22"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hinthong</surname> <given-names>W.</given-names></name> <name><surname>Pumipuntu</surname> <given-names>N.</given-names></name> <name><surname>Santajit</surname> <given-names>S.</given-names></name> <name><surname>Kulpeanprasit</surname> <given-names>S.</given-names></name> <name><surname>Buranasinsup</surname> <given-names>S.</given-names></name> <name><surname>Sookrung</surname> <given-names>N.</given-names></name></person-group> (<year>2017</year>). <article-title>Detection and drug resistance profile of <italic>Escherichia coli</italic> from subclinical mastitis cows and water supply in dairy farms in Saraburi Province, Thailand</article-title>. <source>PeerJ</source> <volume>5</volume>:<fpage>e3431</fpage>. doi: <pub-id pub-id-type="doi">10.7717/peerj.3431</pub-id>, PMID: <pub-id pub-id-type="pmid">28626609</pub-id></citation></ref>
<ref id="ref24"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Hu</surname> <given-names>Y.</given-names></name> <name><surname>Yang</surname> <given-names>X.</given-names></name> <name><surname>Li</surname> <given-names>J.</given-names></name> <name><surname>Lv</surname> <given-names>N.</given-names></name> <name><surname>Liu</surname> <given-names>F.</given-names></name> <name><surname>Wu</surname> <given-names>J.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>The transfer network of bacterial mobile resistome connecting animal and human microbiome</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>82</volume>, <fpage>6672</fpage>&#x2013;<lpage>6681</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.01802-16</pub-id>, PMID: <pub-id pub-id-type="pmid">27613679</pub-id></citation></ref>
<ref id="ref25"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Islam</surname> <given-names>M. A.</given-names></name> <name><surname>Kabir</surname> <given-names>S. M. L.</given-names></name> <name><surname>Seel</surname> <given-names>S. K.</given-names></name></person-group> (<year>2016</year>). <article-title>Molecular detection and characterization of <italic>Escherichia coli</italic> isolated from raw milk sold in different markets of Bangladesh</article-title>. <source>Bangladesh J. Vet. Med.</source> <volume>14</volume>, <fpage>271</fpage>&#x2013;<lpage>275</lpage>. doi: <pub-id pub-id-type="doi">10.3329/bjvm.v14i2.31408</pub-id></citation></ref>
<ref id="ref26"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jayarao</surname> <given-names>B. M.</given-names></name> <name><surname>Donaldson</surname> <given-names>S. C.</given-names></name> <name><surname>Straley</surname> <given-names>B. A.</given-names></name> <name><surname>Sawant</surname> <given-names>A. A.</given-names></name> <name><surname>Hegde</surname> <given-names>N. V.</given-names></name> <name><surname>Brown</surname> <given-names>J. L.</given-names></name></person-group> (<year>2006</year>). <article-title>A survey of foodborne pathogens in bulk tank milk and raw milk consumption among farm families in Pennsylvania</article-title>. <source>J. Dairy Sci.</source> <volume>89</volume>, <fpage>2451</fpage>&#x2013;<lpage>2458</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.S0022-0302(06)72318-9</pub-id>, PMID: <pub-id pub-id-type="pmid">16772561</pub-id></citation></ref>
<ref id="ref27"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Jayarao</surname> <given-names>B. M.</given-names></name> <name><surname>Henning</surname> <given-names>D. R.</given-names></name></person-group> (<year>2001</year>). <article-title>Prevalence of foodborne pathogens in bulk tank milk</article-title>. <source>J. Dairy Sci.</source> <volume>84</volume>, <fpage>2157</fpage>&#x2013;<lpage>2162</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.S0022-0302(01)74661-9</pub-id>, PMID: <pub-id pub-id-type="pmid">11699446</pub-id></citation></ref>
<ref id="ref28"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Kaper</surname> <given-names>J. B.</given-names></name> <name><surname>Nataro</surname> <given-names>J. P.</given-names></name> <name><surname>Mobley</surname> <given-names>H. L.</given-names></name></person-group> (<year>2004</year>). <article-title>Pathogenic <italic>Escherichia coli</italic></article-title>. <source>Nat. Rev. Microbiol.</source> <volume>2</volume>, <fpage>123</fpage>&#x2013;<lpage>140</lpage>. doi: <pub-id pub-id-type="doi">10.1038/nrmicro818</pub-id>, PMID: <pub-id pub-id-type="pmid">15040260</pub-id></citation></ref>
<ref id="ref29"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lambertini</surname> <given-names>E.</given-names></name> <name><surname>Karns</surname> <given-names>J. S.</given-names></name> <name><surname>Kessel</surname> <given-names>J.</given-names></name> <name><surname>Cao</surname> <given-names>H.</given-names></name> <name><surname>Pradhan</surname> <given-names>A. K.</given-names></name></person-group> (<year>2015</year>). <article-title>Dynamics of <italic>Escherichia coli</italic> virulence factors in dairy herds and farm environments in a longitudinal study in the United States</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>81</volume>, <fpage>4477</fpage>&#x2013;<lpage>4488</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.00465-15</pub-id>, PMID: <pub-id pub-id-type="pmid">25911478</pub-id></citation></ref>
<ref id="ref30"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lan</surname> <given-names>X. Y.</given-names></name> <name><surname>Zhao</surname> <given-names>S. G.</given-names></name> <name><surname>Zheng</surname> <given-names>N.</given-names></name> <name><surname>Li</surname> <given-names>S. L.</given-names></name> <name><surname>Zhang</surname> <given-names>Y. D.</given-names></name> <name><surname>Liu</surname> <given-names>H. M.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Short communication: microbiological quality of raw milk of raw cow milk and its association with herd management practices in Northern China</article-title>. <source>J. Dairy Sci.</source> <volume>100</volume>, <fpage>4294</fpage>&#x2013;<lpage>4299</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2016-11631</pub-id>, PMID: <pub-id pub-id-type="pmid">28434737</pub-id></citation></ref>
<ref id="ref31"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Lippolis</surname> <given-names>J. D.</given-names></name> <name><surname>Holman</surname> <given-names>D. B.</given-names></name> <name><surname>Brunelle</surname> <given-names>B. W.</given-names></name> <name><surname>Thacker</surname> <given-names>T. C.</given-names></name> <name><surname>Bearson</surname> <given-names>B. L.</given-names></name> <name><surname>Reinhardt</surname> <given-names>T. A.</given-names></name></person-group> (<year>2017</year>). <article-title>Genomic and transcriptomic analysis of <italic>Escherichia coli</italic> strains associated with persistent and transient bovine mastitis and the role of colanic acid</article-title>. <source>Infect. Immun.</source> <volume>86</volume>:<fpage>e00566-17</fpage>. doi: <pub-id pub-id-type="doi">10.1128/IAI.00566-17</pub-id>, PMID: <pub-id pub-id-type="pmid">29061709</pub-id></citation></ref>
<ref id="ref33"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>H. M.</given-names></name> <name><surname>Li</surname> <given-names>S. L.</given-names></name> <name><surname>Meng</surname> <given-names>L.</given-names></name> <name><surname>Dong</surname> <given-names>L.</given-names></name> <name><surname>Zhao</surname> <given-names>S. G.</given-names></name> <name><surname>Lan</surname> <given-names>X. Y.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>Prevalence, antimicrobial susceptibility, and molecular characterization of <italic>Staphylococcus aureus</italic> isolated from dairy herds in northern China</article-title>. <source>J. Dairy Sci.</source> <volume>100</volume>, <fpage>8796</fpage>&#x2013;<lpage>8803</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2017-13370</pub-id>, PMID: <pub-id pub-id-type="pmid">28865851</pub-id></citation></ref>
<ref id="ref34"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Liu</surname> <given-names>J.</given-names></name> <name><surname>Zhu</surname> <given-names>Y.</given-names></name> <name><surname>Jay-Russell</surname> <given-names>M.</given-names></name> <name><surname>Lemay</surname> <given-names>D. G.</given-names></name> <name><surname>Mills</surname> <given-names>D. A.</given-names></name></person-group> (<year>2020</year>). <article-title>Reservoirs of antimicrobial resistance genes in retail raw milk</article-title>. <source>Microbiome</source> <volume>8</volume>:<fpage>99</fpage>. doi: <pub-id pub-id-type="doi">10.1186/s40168-020-00861-6</pub-id>, PMID: <pub-id pub-id-type="pmid">32591006</pub-id></citation></ref>
<ref id="ref35"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>McConnel</surname> <given-names>C. S.</given-names></name> <name><surname>Stenkamp-Strahm</surname> <given-names>C. M.</given-names></name> <name><surname>Rao</surname> <given-names>S.</given-names></name> <name><surname>Linke</surname> <given-names>L. M.</given-names></name> <name><surname>Magnuson</surname> <given-names>R. J.</given-names></name> <name><surname>Hyatt</surname> <given-names>D. R.</given-names></name></person-group> (<year>2016</year>). <article-title>Antimicrobial resistance profiles in <italic>Escherichia coli</italic> O157 isolated from Northern Colorado dairies</article-title>. <source>J. Food Prot.</source> <volume>79</volume>, <fpage>484</fpage>&#x2013;<lpage>487</lpage>. doi: <pub-id pub-id-type="doi">10.4315/0362-028X.JFP-15-321</pub-id>, PMID: <pub-id pub-id-type="pmid">26939660</pub-id></citation></ref>
<ref id="ref36"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Medeiros</surname> <given-names>P.</given-names></name> <name><surname>Bolick</surname> <given-names>D.</given-names></name> <name><surname>Roche</surname> <given-names>J. K.</given-names></name> <name><surname>Noronha</surname> <given-names>F.</given-names></name> <name><surname>Pinheiro</surname> <given-names>C.</given-names></name> <name><surname>Kolling</surname> <given-names>G.</given-names></name> <etal/></person-group>. (<year>2013</year>). <article-title>The micronutrient zinc inhibits EAEC strain 042 adherence, biofilm formation, virulence gene expression, and epithelial cytokine responses benefiting the infected host</article-title>. <source>Virulence</source> <volume>4</volume>, <fpage>624</fpage>&#x2013;<lpage>633</lpage>. doi: <pub-id pub-id-type="doi">10.4161/viru.26120</pub-id>, PMID: <pub-id pub-id-type="pmid">23958904</pub-id></citation></ref>
<ref id="ref37"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Nam</surname> <given-names>H. M.</given-names></name> <name><surname>Lim</surname> <given-names>S. K.</given-names></name> <name><surname>Kang</surname> <given-names>H. M.</given-names></name> <name><surname>Kim</surname> <given-names>J. M.</given-names></name> <name><surname>Moon</surname> <given-names>J. S.</given-names></name> <name><surname>Jang</surname> <given-names>K. C.</given-names></name></person-group> (<year>2009</year>). <article-title>Prevalence and antimicrobial susceptibility of gram-negative bacteria isolated from bovine mastitis between 2003 and 2008 in Korea</article-title>. <source>J. Dairy Sci.</source> <volume>92</volume>, <fpage>2020</fpage>&#x2013;<lpage>2026</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2008-1739</pub-id>, PMID: <pub-id pub-id-type="pmid">19389959</pub-id></citation></ref>
<ref id="ref38"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Navajas-Benito</surname> <given-names>E. V.</given-names></name> <name><surname>Alonso</surname> <given-names>C. A.</given-names></name> <name><surname>Sanz</surname> <given-names>S.</given-names></name> <name><surname>Olarte</surname> <given-names>C.</given-names></name> <name><surname>Mart&#x00ED;nez-Olarte</surname> <given-names>R.</given-names></name> <name><surname>Hidalgo-Sanz</surname> <given-names>S.</given-names></name></person-group> (<year>2016</year>). <article-title>Molecular characterization of antibiotic resistance in <italic>Escherichia coli</italic> strains from a dairy cattle farm and its surroundings</article-title>. <source>J. Sci. Food Agric.</source> <volume>97</volume>, <fpage>363</fpage>&#x2013;<lpage>365</lpage>. doi: <pub-id pub-id-type="doi">10.1002/jsfa.7709</pub-id>, PMID: <pub-id pub-id-type="pmid">26969806</pub-id></citation></ref>
<ref id="ref39"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ntuli</surname> <given-names>V.</given-names></name> <name><surname>Njage</surname> <given-names>P. M. K.</given-names></name> <name><surname>Buys</surname> <given-names>E. M.</given-names></name></person-group> (<year>2016</year>). <article-title>Characterization of <italic>Escherichia coli</italic> and other <italic>Enterobacteriaceae</italic> in producer-distributor bulk milk</article-title>. <source>J. Dairy Sci.</source> <volume>99</volume>, <fpage>9534</fpage>&#x2013;<lpage>9549</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2016-11403</pub-id>, PMID: <pub-id pub-id-type="pmid">27720154</pub-id></citation></ref>
<ref id="ref40"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ohnishi</surname> <given-names>M.</given-names></name> <name><surname>Okatani</surname> <given-names>A. T.</given-names></name> <name><surname>Harada</surname> <given-names>K.</given-names></name> <name><surname>Sawada</surname> <given-names>T.</given-names></name> <name><surname>Takahashi</surname> <given-names>T.</given-names></name></person-group> (<year>2013</year>). <article-title>Genetic characteristics of CTX-M-type extended-spectrum-&#x03B2;-lactamase (ESBL)-producing <italic>Enterobacteriaceae</italic> involved in mastitis cases on Japanese dairy farms, 2007 to 2011</article-title>. <source>J. Clin. Microbiol.</source> <volume>51</volume>, <fpage>3117</fpage>&#x2013;<lpage>3122</lpage>. doi: <pub-id pub-id-type="doi">10.1128/JCM.00920-13</pub-id>, PMID: <pub-id pub-id-type="pmid">23843488</pub-id></citation></ref>
<ref id="ref41"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ombarak</surname> <given-names>R. A.</given-names></name> <name><surname>Hinenoya</surname> <given-names>A.</given-names></name> <name><surname>Awasthi</surname> <given-names>S. P.</given-names></name> <name><surname>Iguchi</surname> <given-names>A.</given-names></name> <name><surname>Shima</surname> <given-names>A.</given-names></name> <name><surname>Elbagory</surname> <given-names>A. R. M.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Prevalence and pathogenic potential of <italic>Escherichia coli</italic> isolates from raw milk and raw milk cheese in Egypt</article-title>. <source>Int. J. Food. Microbial.</source> <volume>221</volume>, <fpage>69</fpage>&#x2013;<lpage>76</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijfoodmicro.2016.01.009</pub-id>, PMID: <pub-id pub-id-type="pmid">26824810</pub-id></citation></ref>
<ref id="ref42"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Pradel</surname> <given-names>N.</given-names></name> <name><surname>Bertin</surname> <given-names>Y.</given-names></name> <name><surname>Martin</surname> <given-names>C.</given-names></name> <name><surname>Livrelli</surname> <given-names>V.</given-names></name></person-group> (<year>2008</year>). <article-title>Molecular analysis of Shiga toxin-producing <italic>Escherichia coli</italic> strains isolated from hemolytic-uremic syndrome patients and dairy samples in France</article-title>. <source>Appl. Environ. Microbiol.</source> <volume>74</volume>, <fpage>2118</fpage>&#x2013;<lpage>2128</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.02688-07</pub-id>, PMID: <pub-id pub-id-type="pmid">18245246</pub-id></citation></ref>
<ref id="ref43"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ribeiro</surname> <given-names>L. F.</given-names></name> <name><surname>Barbosa</surname> <given-names>M. M. C.</given-names></name> <name><surname>Pinto</surname> <given-names>F. R.</given-names></name> <name><surname>Maluta</surname> <given-names>R. P.</given-names></name> <name><surname>Oliveira</surname> <given-names>M. C.</given-names></name> <name><surname>de Souza</surname> <given-names>V.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Antimicrobial resistance and virulence factors of <italic>Escherichia coli</italic> in cheese made from unpasteurized milk in three cities in Brazil</article-title>. <source>Foodborne Pathog. Dis.</source> <volume>13</volume>, <fpage>469</fpage>&#x2013;<lpage>476</lpage>. doi: <pub-id pub-id-type="doi">10.1089/fpd.2015.2106</pub-id>, PMID: <pub-id pub-id-type="pmid">27258947</pub-id></citation></ref>
<ref id="ref500"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Radostits</surname> <given-names>O. M.</given-names></name> <name><surname>Gay</surname> <given-names>C. C.</given-names></name> <name><surname>Hinchcliff</surname> <given-names>K. W.</given-names></name></person-group> (<year>2007</year>). Veterinary Medicine&#x2014; A textbook of the diseases of cattle, horses, sheep, pigs, and goats. 10.ed. Philadelphia: Saunders. <fpage>673</fpage>&#x2013;<lpage>762</lpage>. PMID: <pub-id pub-id-type="pmid">28588005</pub-id></citation></ref>
<ref id="ref44"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Ruegg</surname> <given-names>P. L.</given-names></name> <name><surname>Oliveira</surname> <given-names>L.</given-names></name> <name><surname>Jin</surname> <given-names>W.</given-names></name> <name><surname>Okwumabua</surname> <given-names>O.</given-names></name></person-group> (<year>2014</year>). <article-title>Phenotypic antimicrobial susceptibility and occurrence of selected resistance genes in gram-positive mastitis pathogens isolated from Wisconsin dairy cows</article-title>. <source>J. Dairy Sci.</source> <volume>98</volume>, <fpage>4521</fpage>&#x2013;<lpage>4534</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2014-9137</pub-id>, PMID: <pub-id pub-id-type="pmid">25912858</pub-id></citation></ref>
<ref id="ref45"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Rugeles</surname> <given-names>L. C.</given-names></name> <name><surname>Bai</surname> <given-names>J.</given-names></name> <name><surname>Martinez</surname> <given-names>A. J.</given-names></name> <name><surname>Vanegas</surname> <given-names>M. C.</given-names></name> <name><surname>Gomez-Duarte</surname> <given-names>O. G.</given-names></name></person-group> (<year>2010</year>). <article-title>Molecular characterization of diarrheagenic <italic>Escherichia coli</italic> strains from stools samples and food products in Colombia</article-title>. <source>Int. J. Food Microbiol.</source> <volume>138</volume>, <fpage>282</fpage>&#x2013;<lpage>286</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijfoodmicro.2010.01.034</pub-id>, PMID: <pub-id pub-id-type="pmid">20153069</pub-id></citation></ref>
<ref id="ref46"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Santman-Berends</surname> <given-names>I.</given-names></name> <name><surname>Gonggrijp</surname> <given-names>M. A.</given-names></name> <name><surname>Hage</surname> <given-names>J. J.</given-names></name> <name><surname>Heuvelink</surname> <given-names>A. E.</given-names></name> <name><surname>Velthuis</surname> <given-names>A.</given-names></name> <name><surname>Lam</surname> <given-names>T.</given-names></name></person-group> (<year>2016</year>). <article-title>Prevalence and risk factors for extended-spectrum beta-lactamase or AMPC-producing <italic>Escherichia coli</italic> in organic dairy herds in the Netherlands</article-title>. <source>J. Dairy Sci.</source> <volume>562</volume>, <fpage>120</fpage>&#x2013;<lpage>128</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2016-11839</pub-id></citation></ref>
<ref id="ref47"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Sharma</surname> <given-names>S.</given-names></name> <name><surname>Aarif</surname> <given-names>K.</given-names></name> <name><surname>Dahiya</surname> <given-names>D. K.</given-names></name> <name><surname>Jain</surname> <given-names>J.</given-names></name> <name><surname>Sharma</surname> <given-names>V.</given-names></name></person-group> (<year>2015</year>). <article-title>Prevalence, identification and drug resistance pattern of <italic>Staphylococcus aureus</italic> and <italic>Escherichia coli</italic> isolated from raw milk samples of Jaipur city of Rajasthan</article-title>. <source>J. Pure Appl. Microbiol.</source> <volume>9</volume>, <fpage>341</fpage>&#x2013;<lpage>348</lpage>.</citation></ref>
<ref id="ref48"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Su</surname> <given-names>Y. C.</given-names></name> <name><surname>Yu</surname> <given-names>C. Y.</given-names></name> <name><surname>Tsai</surname> <given-names>Y. L.</given-names></name> <name><surname>Wang</surname> <given-names>S. H.</given-names></name> <name><surname>Lee</surname> <given-names>C. h.</given-names></name> <name><surname>Chu</surname> <given-names>C.</given-names></name></person-group> (<year>2016</year>). <article-title>Fluoroquinolone-resistant and extended-spectrum &#x03B2;-lactamase-producing <italic>Escherichia coli</italic> from the milk of cows with clinical mastitis in Southern Taiwan</article-title>. <source>J. Microbiol. Immunol. Infect.</source> <volume>49</volume>, <fpage>892</fpage>&#x2013;<lpage>901</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.jmii.2014.10.003</pub-id>, PMID: <pub-id pub-id-type="pmid">25592882</pub-id></citation></ref>
<ref id="ref49"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Suojala</surname> <given-names>L.</given-names></name> <name><surname>Pohjanvirta</surname> <given-names>T.</given-names></name> <name><surname>Simojoki</surname> <given-names>H.</given-names></name> <name><surname>Myllyniemi</surname> <given-names>A. L.</given-names></name> <name><surname>Pitkala</surname> <given-names>A.</given-names></name> <name><surname>Pelkonen</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2011</year>). <article-title>Phylogeny, virulence factors and antimicrobial susceptibility of <italic>Escherichia coli</italic> isolated in clinical bovine mastitis</article-title>. <source>Vet. Microbiol.</source> <volume>147</volume>, <fpage>383</fpage>&#x2013;<lpage>388</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.vetmic.2010.07.011</pub-id>, PMID: <pub-id pub-id-type="pmid">20729012</pub-id></citation></ref>
<ref id="ref50"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tabaran</surname> <given-names>A.</given-names></name> <name><surname>Mihaiu</surname> <given-names>M.</given-names></name> <name><surname>Tabaran</surname> <given-names>F.</given-names></name> <name><surname>Colobatiu</surname> <given-names>L.</given-names></name> <name><surname>Reget</surname> <given-names>O.</given-names></name> <name><surname>Borzan</surname> <given-names>M. M.</given-names></name> <etal/></person-group>. (<year>2017</year>). <article-title>First study on characterization of virulence and antibiotic resistance genes in verotoxigenic and enterotoxigenic <italic>E. coli</italic> isolated from raw milk and unpasteurized traditional cheeses in Romania</article-title>. <source>Folia Microbiol.</source> <volume>62</volume>, <fpage>145</fpage>&#x2013;<lpage>150</lpage>. doi: <pub-id pub-id-type="doi">10.1007/s12223-016-0481-8</pub-id>, PMID: <pub-id pub-id-type="pmid">27837411</pub-id></citation></ref>
<ref id="ref51"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Tark</surname> <given-names>D. S.</given-names></name> <name><surname>Moon</surname> <given-names>D. C.</given-names></name> <name><surname>Kang</surname> <given-names>H. Y.</given-names></name> <name><surname>Kim</surname> <given-names>S. R.</given-names></name> <name><surname>Nam</surname> <given-names>H. M.</given-names></name> <name><surname>Lee</surname> <given-names>H. S.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Antimicrobial susceptibility and characterization of extended-spectrum &#x03B2;-lactamases in <italic>Escherichia coli</italic> isolated from bovine mastitic milk in South Korea from 2012 to 2015</article-title>. <source>J. Dairy Sci.</source> <volume>100</volume>, <fpage>3463</fpage>&#x2013;<lpage>3469</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2016-12276</pub-id>, PMID: <pub-id pub-id-type="pmid">28318579</pub-id></citation></ref>
<ref id="ref52"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Timofte</surname> <given-names>D.</given-names></name> <name><surname>Maciuca</surname> <given-names>I. E.</given-names></name> <name><surname>Evans</surname> <given-names>N. J.</given-names></name> <name><surname>Williams</surname> <given-names>H.</given-names></name> <name><surname>Wattret</surname> <given-names>A.</given-names></name> <name><surname>Fick</surname> <given-names>J. C.</given-names></name></person-group> (<year>2014</year>). <article-title>Detection and molecular characterization of <italic>Escherichia coli</italic> CTX-M-15 and <italic>Klebsiella pneumoniae</italic> SHV-12 &#x03B2;-lactamases from bovine mastitis isolates in the United Kingdom</article-title>. <source>Antimicrob. Agents Chemother.</source> <volume>58</volume>, <fpage>789</fpage>&#x2013;<lpage>794</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AAC.00752-13</pub-id>, PMID: <pub-id pub-id-type="pmid">24247146</pub-id></citation></ref>
<ref id="ref53"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Trevisani</surname> <given-names>M.</given-names></name> <name><surname>Mancusi</surname> <given-names>R.</given-names></name> <name><surname>Donne</surname> <given-names>G. D.</given-names></name> <name><surname>Bacci</surname> <given-names>C.</given-names></name> <name><surname>Bassi</surname> <given-names>L.</given-names></name> <name><surname>Bonardi</surname> <given-names>S.</given-names></name></person-group> (<year>2014</year>). <article-title>Detection of Shiga toxin (<italic>Stx</italic>)-producing <italic>Escherichia coli</italic> (STEC) in bovine dairy herds in northern Italy</article-title>. <source>Int. J. Food Microbiol.</source> <volume>184</volume>, <fpage>45</fpage>&#x2013;<lpage>49</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.ijfoodmicro.2013.12.033</pub-id>, PMID: <pub-id pub-id-type="pmid">24495690</pub-id></citation></ref>
<ref id="ref54"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Van Kessel</surname> <given-names>J. A. S.</given-names></name> <name><surname>Karns</surname> <given-names>J. S.</given-names></name> <name><surname>Lombard</surname> <given-names>J. E.</given-names></name> <name><surname>Kopral</surname> <given-names>A. C. A.</given-names></name></person-group> (<year>2011</year>). <article-title>Prevalence of <italic>Salmonella enterica</italic>, listeria monocytogenes, and <italic>Escherichia coli</italic> virulence factors in bulk tank milk and in-line filters from US dairies</article-title>. <source>J. Food Prot.</source> <volume>74</volume>, <fpage>759</fpage>&#x2013;<lpage>768</lpage>. doi: <pub-id pub-id-type="doi">10.4315/0362-028X.JFP-10-423</pub-id>, PMID: <pub-id pub-id-type="pmid">21549046</pub-id></citation></ref>
<ref id="ref55"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Wang</surname> <given-names>D.</given-names></name> <name><surname>Zhang</surname> <given-names>L. M.</given-names></name> <name><surname>Zhou</surname> <given-names>X. Z.</given-names></name> <name><surname>He</surname> <given-names>Y. L.</given-names></name> <name><surname>Yong</surname> <given-names>C. H.</given-names></name> <name><surname>Shen</surname> <given-names>M. L.</given-names></name> <etal/></person-group>. (<year>2016</year>). <article-title>Antimicrobial susceptibility, virulence genes, and randomly amplified polymorphic DNA analysis of <italic>Staphylococcus aureus</italic> recovered from bovine mastitis in Ningxia, China</article-title>. <source>J. Dairy Sci.</source> <volume>99</volume>, <fpage>9560</fpage>&#x2013;<lpage>9569</lpage>. doi: <pub-id pub-id-type="doi">10.3168/jds.2016-11625</pub-id>, PMID: <pub-id pub-id-type="pmid">27771092</pub-id></citation></ref>
<ref id="ref800"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhang</surname> <given-names>S. H.</given-names></name> <name><surname>Wu</surname> <given-names>Q. P.</given-names></name> <name><surname>Zhang</surname> <given-names>J. M.</given-names></name> <name><surname>Lai</surname> <given-names>Z. P.</given-names></name> <name><surname>Zhu</surname> <given-names>X. M.</given-names></name></person-group> (<year>2016</year>). <article-title>Prevalence, genetic diversity, and antibiotic resistance of enterotoxigenic Escherichia coli in retail ready to eat foods in China</article-title>. <source>China. Food Control.</source> <volume>68</volume>, <fpage>236</fpage>&#x2013;<lpage>243</lpage>. doi: <pub-id pub-id-type="doi">10.1016/j.foodcont.2016.03.051</pub-id>, PMID: <pub-id pub-id-type="pmid">20153069</pub-id></citation></ref>
<ref id="ref56"><citation citation-type="journal"><person-group person-group-type="author"><name><surname>Zhao</surname> <given-names>S. G.</given-names></name> <name><surname>Tyson</surname> <given-names>H.</given-names></name> <name><surname>Chen</surname> <given-names>Y.</given-names></name> <name><surname>Li</surname> <given-names>C.</given-names></name> <name><surname>Mukherjee</surname> <given-names>S.</given-names></name> <name><surname>Young</surname> <given-names>S.</given-names></name> <etal/></person-group>. (<year>2015</year>). <article-title>Whole genome sequencing analysis accurately predicts antimicrobial resistance phenotypes in <italic>Campylobacter</italic> spp.</article-title> <source>Appl. Environ. Microbiol.</source> <volume>82</volume>, <fpage>459</fpage>&#x2013;<lpage>466</lpage>. doi: <pub-id pub-id-type="doi">10.1128/AEM.02873-15</pub-id>, PMID: <pub-id pub-id-type="pmid">26519386</pub-id></citation></ref></ref-list></back></article>