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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2022.995469</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Light-induced shifts in opsin gene expression in the four-eyed fish <italic>Anableps anableps</italic></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Salgado</surname> <given-names>Daniele</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Mariluz</surname> <given-names>Bertha R.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1944286/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Araujo</surname> <given-names>Maysa</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Lorena</surname> <given-names>Jamily</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1953781/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Perez</surname> <given-names>Louise N.</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1944228/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Ribeiro</surname> <given-names>Rafaela de L.</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Sousa</surname> <given-names>Josane de F.</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/713620/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Schneider</surname> <given-names>Patricia N.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1597287/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Instituto de Ci&#x00EA;ncias Biol&#x00F3;gicas, Universidade Federal do Par&#x00E1;</institution>, <addr-line>Bel&#x00E9;m</addr-line>, <country>Brazil</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Integrative Biology, Michigan State University</institution>, <addr-line>East Lansing, MI</addr-line>, <country>United States</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Biological Sciences, Louisiana State University</institution>, <addr-line>Baton Rouge, LA</addr-line>, <country>United States</country></aff>
<aff id="aff4"><sup>4</sup><institution>Instituto Tecnologico Vale</institution>, <addr-line>Bel&#x00E9;m</addr-line>, <country>Brazil</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Daniel Ortu&#x00F1;o-Sahag&#x00FA;n, University of Guadalajara, Mexico</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Kanta Mizusawa, Kitasato University, Japan; Ryota Matsuo, Fukuoka Women&#x2019;s University, Japan</p></fn>
<corresp id="c001">&#x002A;Correspondence: Patricia N. Schneider, <email>pschneider@lsu.edu</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Neurodevelopment, a section of the journal Frontiers in Neuroscience</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>29</day>
<month>09</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>16</volume>
<elocation-id>995469</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>07</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>09</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2022 Salgado, Mariluz, Araujo, Lorena, Perez, Ribeiro, Sousa and Schneider.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Salgado, Mariluz, Araujo, Lorena, Perez, Ribeiro, Sousa and Schneider</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>The development of the vertebrate eye is a complex process orchestrated by several conserved transcriptional and signaling regulators. Aside from partial or complete loss, examples of exceptional modifications to this intricate organ are scarce. The unique eye of the four-eyed fish <italic>Anableps anableps</italic> is composed of duplicated corneas and pupils, as well as specialized retina regions associated with simultaneous aerial and aquatic vision. In a previous transcriptomic study of the <italic>A. anableps</italic> developing eye we identified expression of twenty non-visual and eleven visual opsin genes. Here, we surveyed the expression territories of three non-visual melanopsins genes (<italic>opn4</italic>&#x00D7;<italic>1, opn4</italic>&#x00D7;<italic>2, opn4m3</italic>), one teleost multiple tissue opsin (<italic>tmt1b</italic>) and two visual opsins (<italic>lws and rh2-1</italic>) in dorsal and ventral retinas. Our data showed that asymmetry of non-visual opsin expression is only established after birth. During embryonic development, while inside pregnant females, the expression of <italic>opn4</italic>&#x00D7;<italic>1, opn4</italic>&#x00D7;<italic>2</italic>, and <italic>tmt1b</italic> spans the whole retina. In juvenile fish (post birth), the expression of <italic>opn4</italic>&#x00D7;<italic>1, opn4</italic>&#x00D7;<italic>2, opn4m3</italic>, and <italic>tmt1b</italic> genes becomes restricted to the ventral retina, which receives aerial light. Raising juvenile fish in clear water instead of the murky waters found in its natural habitat is sufficient to change gene expression territories of <italic>opn4</italic>&#x00D7;<italic>1, opn4</italic>&#x00D7;<italic>2, opn4m3</italic>, <italic>tmt1b</italic>, and <italic>rh2-1</italic>, demonstrating that different lighting conditions can shift opsin expression and potentially contribute to changes in spectral sensitivity in the four eyed fish.</p>
</abstract>
<kwd-group>
<kwd>evolution</kwd>
<kwd>opsin</kwd>
<kwd>plasticity</kwd>
<kwd>retina</kwd>
<kwd><italic>Anableps</italic></kwd>
</kwd-group>
<counts>
<fig-count count="4"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="45"/>
<page-count count="8"/>
<word-count count="5487"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>Change in environmental light is an important driving force for the diversity of visual systems in vertebrates. Aquatic animals occupy a great range of visual environments and have evolved adaptations to increase sensitivity to the availability of light (<xref ref-type="bibr" rid="B5">Collin, 2009</xref>). Evolutionary and developmental adaptations to the visual system have ensured success in avoiding predation, establishing feeding behavior and finding sexual partners (<xref ref-type="bibr" rid="B19">Jeffery, 2020</xref>; <xref ref-type="bibr" rid="B38">Thomas et al., 2020</xref>). For example, cichlid fishes show a versatile visual system with a complex sensory plasticity that regulates reproductive, feeding, and social behavior (<xref ref-type="bibr" rid="B3">Butler et al., 2019</xref>; <xref ref-type="bibr" rid="B25">Maruska and Butler, 2021</xref>). Substantial changes to the general structure of the vertebrate eye are rare, and include total or partial loss of the eyes, as seen in cavefishes, and the specialized retinas of the deep-water fish (<xref ref-type="bibr" rid="B43">Warrant and Locket, 2004</xref>; <xref ref-type="bibr" rid="B2">Biagioni et al., 2016</xref>; <xref ref-type="bibr" rid="B24">Lunghi et al., 2019</xref>).</p>
<p>Attempt in eye duplication is a rare event observed in only a few fish lineages such as <italic>Dialommus fuscus</italic> and <italic>Dialommus macrocephalus</italic>, also known as &#x201C;Rockskipper,&#x201D; these fish are terrestrial predators and have a vertically split cornea that allows them to remain upright with one cornea in and the other out of the water. In addition, <italic>Bathylychnops exilis</italic>, inhabits depths between 600 and 3,000 ft, and has an auxiliary globe in addition to the main eyeball directed toward the ocean floor (<xref ref-type="bibr" rid="B35">Schwab et al., 2001</xref>). Species from the genus <italic>Anableps</italic> are also a remarkable example of extreme adaptation of the visual system. With a partially duplicated eye, simultaneous aerial and aquatic vision, and a single optic nerve, <italic>Anableps</italic> consists in a unique model to understand the genetic bases of eye duplication (<xref ref-type="fig" rid="F1">Figure 1A</xref>; <xref ref-type="bibr" rid="B35">Schwab et al., 2001</xref>; <xref ref-type="bibr" rid="B29">Owens et al., 2012</xref>; <xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>The <italic>Anableps</italic> anableps. <bold>(A)</bold> Anableps anableps female specimen, dorsal close-up view of the <italic>A. anableps</italic> head and part of the body. <bold>(B)</bold> Schematic of the <italic>A. anableps</italic> eye showing the water line and asymmetric gene expression of <italic>lws</italic> and <italic>rh2-1</italic> genes in the dorsal and ventral retinas, respectively. Dorsal (D), Di (Distal), V (Ventral), and Pr (Proximal).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-995469-g001.tif"/>
</fig>
<p>Morphological innovations to the visual system require molecular changes in photoreception regulation. The distribution of photoreceptor cells and the composition of rods and cones play an important role in spectral sensitivity in teleost fish (<xref ref-type="bibr" rid="B28">Okano et al., 1994</xref>; <xref ref-type="bibr" rid="B5">Collin, 2009</xref>; <xref ref-type="bibr" rid="B34">Sato et al., 2018</xref>).</p>
<p>Membrane proteins known as visual opsins are present in retina cells and act as light sensors. Coupled with chromophores, these proteins mediate light detection and the initiation of visual processing in the photoreceptor cells (<xref ref-type="bibr" rid="B42">Wald, 1968</xref>; <xref ref-type="bibr" rid="B45">Yokoyama, 2000</xref>). Conversely, non-visual opsins, although expressed in the inner retina among other tissues in the vertebrate body, do not participate directly in image formation and instead respond to light by activating a series of non-visual sensory responses. In fish, these proteins are present in the pineal complex, epidermal photoreceptors and in the retina nuclear layers and play an important role in light detection, neural development and control of the circadian rhythm (<xref ref-type="bibr" rid="B28">Okano et al., 1994</xref>; <xref ref-type="bibr" rid="B20">Kojima and Fukada, 1999</xref>; <xref ref-type="bibr" rid="B39">Van Gelder, 2001</xref>; <xref ref-type="bibr" rid="B30">Peirson et al., 2009</xref>).</p>
<p>The melanopsins are the most widely studied non-visual opsins (<xref ref-type="bibr" rid="B30">Peirson et al., 2009</xref>; <xref ref-type="bibr" rid="B9">Diaz et al., 2016</xref>; <xref ref-type="bibr" rid="B40">Van Gelder and Buhr, 2016</xref>; <xref ref-type="bibr" rid="B16">Guido et al., 2020</xref>). In zebrafish (<italic>Danio rerio</italic>), expression of <italic>opn4</italic>&#x00D7;<italic>1a</italic>, <italic>opn4</italic>&#x00D7;<italic>1b</italic>, and <italic>opn4m3</italic> are detected in horizontal, bipolar and amacrine cells while a small subgroup of retinal ganglion cells expresses <italic>opn4</italic>&#x00D7;<italic>1</italic> and <italic>opn4m3</italic>. The expression of <italic>opn4m3</italic> was also detected in the zebrafish retinal pigment epithelial (RPE) (<xref ref-type="bibr" rid="B7">Davies et al., 2011</xref>). In the retina cells of salmon fish (<italic>Salmo salar</italic>), five melanopsin genes were observed: <italic>opn4</italic>&#x00D7;<italic>1a</italic> and <italic>opn4</italic>&#x00D7;<italic>1b</italic>, <italic>opn4m1a1</italic>, <italic>opn4m1a2</italic>, and <italic>opn4m2</italic> (<xref ref-type="bibr" rid="B33">Sandbakken et al., 2012</xref>). The non-visual opsin multiple tissue of teleosts (<italic>tmt</italic>) is expressed in the eyes, brain, liver, kidneys, and heart of fugu (<italic>Fugu rubripes</italic>) and zebrafish and in the brain and eyes of medaka (<italic>Oryzias latipes</italic>) (<xref ref-type="bibr" rid="B27">Moutsaki et al., 2003</xref>; <xref ref-type="bibr" rid="B12">Fischer et al., 2013</xref>). Previous studies have demonstrated that tmt1 and tmt2 opsins act as a blue light-sensitive Gi/Go-coupled receptors but exhibited spectral properties and photo-convertibility of the active state different from each other (<xref ref-type="bibr" rid="B9">Diaz et al., 2016</xref>; <xref ref-type="bibr" rid="B16">Guido et al., 2020</xref>). While non-visual opsins are expressed in the retina cells of many fish species, the exact role of these proteins and their physiological functions remain to be elucidated (<xref ref-type="bibr" rid="B9">Diaz et al., 2016</xref>; <xref ref-type="bibr" rid="B16">Guido et al., 2020</xref>).</p>
<p>Asymmetric gene expression of opsin genes is another way of modulating visual sensitivity, and this mechanism plays an important role in the diversification of visual pigments in fish, leading to changes in spectral sensitivity (<xref ref-type="bibr" rid="B18">Hofmann and Carleton, 2009</xref>; <xref ref-type="bibr" rid="B17">Hauser and Chang, 2017</xref>). In addition, modulation of spectral sensitivity could also occur as part of a short-term plastic response to environmental changes, as observed in the eyes of the four eyed fish <italic>Anableps anableps.</italic></p>
<p><italic>Anableps</italic> are livebearers; female fish give birth to fully developed progeny, similarly to mammals. Previous work from our group has shown that the establishment of asymmetric expression of visual opsins (<italic>rh2-1</italic> and <italic>lws</italic>) occurs prior to birth and is independent of photic input, suggesting that it is genetically programmed (<xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>). Here, we show that <italic>opn4</italic>&#x00D7;<italic>1</italic>, <italic>opn4</italic>&#x00D7;<italic>2</italic>, and <italic>tmt1b</italic> are expressed symmetrically in the entire retina of the developing eye of the <italic>A. anableps</italic> during larval stages. In the juvenile fish, <italic>tmt1b, opn4</italic>&#x00D7;<italic>1, opn4</italic>&#x00D7;<italic>2</italic>, and <italic>opn4m3</italic> shift the expression domain and become restricted to the ventral retina. <italic>A. anableps</italic> inhabit murky waters of the Amazon River and its tributaries (<xref ref-type="supplementary-material" rid="VS1">Supplementary Video 1</xref>). However, when animals were maintained in aquaria with clear water, we observed loss of <italic>opn4</italic>&#x00D7;<italic>2</italic> expression in the retina, and a shift in <italic>opn4</italic>&#x00D7;<italic>1</italic>, <italic>opn4m3</italic>, and <italic>tmt1b</italic> expression domains, from being restricted to the ventral retina, to being expanded dorsally and occupying the entire retina, recapitulating the expression pattern of the developing eye during larval stages.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="S2.SS1">
<title>Sample collection</title>
<p>Specimens of <italic>A. anableps</italic> were collected by seine net in two locations: Abaetetuba, Par&#x00E1;, Brazil (1&#x00B0;42&#x2032;24.9&#x2033;S 48&#x00B0;53&#x2032;46.4&#x2033;W) and Bragan&#x00E7;a, Par&#x00E1;, Brazil (0&#x00B0;53&#x2032;27.6&#x2033;S 46&#x00B0;39&#x2032;21.9&#x2033;W). Animals were euthanized using MS-222 (Sigma-Aldrich Corp., Milwaukee, WI, USA) followed by decapitation.</p>
</sec>
<sec id="S2.SS2">
<title>Histological analysis</title>
<p>Eyes of wild-caught <italic>A. anableps</italic> juvenile (up to 15 cm long) and larvae were collected and flash frozen in Tissue-Tek<sup>&#x00AE;</sup> O.C.T TM embedding medium (Sakura Finetek USA Inc., Torrance, CA, USA). Sagittal cryosections (20 &#x03BC;m) of the eyes were obtained using CM1850 UV cryostat (Leica Biosystems Nussloch GmbH, Nussloch, BW, Germany) and collected on ColorFrost Plus microscope slides (Thermo Fisher Scientific, Pittsburgh, PA, USA), fixed in 3% paraformaldehyde (Sigma-Aldrich Inc., St. Louis, MO, USA) and stored at &#x2212;80&#x00B0;C for further use.</p>
</sec>
<sec id="S2.SS3">
<title>Lighting environment conditions</title>
<p>Eight juvenile fish were kept in a 75 Gallon glass aquarium with UV filter and standard fluorescent light (40 watts); fish were kept in dechlorinated tap water at 28&#x00B0;C with aeration and biological and mechanical filtration and fed daily with fish ration. Fish were exposed to a day and night cycle of 12 h for 30 days followed by euthanasia, according to Fuller and Claricoates (<xref ref-type="bibr" rid="B14">Fuller and Claricoates, 2011</xref>; <xref ref-type="supplementary-material" rid="VS2">Supplementary Video 2</xref>).</p>
<p>Sagittal sections (20 &#x03BC;m) were obtained using CM1850 UV cryostat (Leica Biosystems Nussloch GmbH, Nussloch, BW, Germany), placed on ColorFrost Plus microscope slides (Thermo Fisher Scientific, Pittsburgh, PA, USA) and stored at &#x2212;80&#x00B0;C for further use. Eight wild-caught juvenile fish were used as control for these experiments.</p>
</sec>
<sec id="S2.SS4">
<title>Riboprobe synthesis</title>
<p>To produce riboprobes for <italic>in situ</italic> hybridization for the genes <italic>opn4m3</italic>, <italic>opn4</italic>&#x00D7;<italic>1</italic>, <italic>opn4</italic>&#x00D7;<italic>2</italic>, and <italic>tmt1b</italic>, we adapted a PCR-based technique for the preparation of riboprobe templates (<xref ref-type="bibr" rid="B6">David and Wedlich, 2001</xref>). First, vectors containing target gene sequences were synthesized in pBlueScript II SK(+) by BioCat GmbH (Heidelberg, Germany). Next, these vectors were used as a template on a PCR reaction. The T7 promoter sequence was included at the 5&#x2032; end of each gene-specific forward primer, whereas the SP6 promoter sequence was added to the 5&#x2032; end of each gene-specific reverse primer. The resulting amplicons for each target gene were subsequently used as template for sense (T7) or antisense (SP6) riboprobe synthesis. Primers (with promoter sequences underlined) were: <italic>opn4m3</italic>-Forward: 5&#x2032; <underline>TAATACGACTCACTATAG</underline>GCTCGTCTGAG GTGGTTTTAGG 3 and reverse: 5&#x2032; <underline>ATTTAGGTGACAC</underline> <underline>TATAG</underline>TGTAGGAGCAGGGTGGAGAAG 3&#x2032;, <italic>opn4</italic>&#x00D7;<italic>1</italic>-Forward: 5&#x2032;<underline>TAATACGACTCACTATAG</underline>CAAAGAAGGCAAC GATGTAGTGA 3&#x2032; and reverse: 5&#x2032; <underline>ATTTAGGTGACACTA</underline> <underline>TAG</underline>ACACGGATTCTATCGGCATGT 3&#x2032;, <italic>opn4</italic>&#x00D7;<italic>2</italic>-Forward: 5&#x2032; <underline>TAATACGACTCACTATAG</underline>CCATTCCTTGTAGAGGCAGTT GATA 3&#x2032; and reverse: 5&#x2032; <underline>ATTTAGGTGACACTATAG</underline>GCGACT TCCTCATGGCTTTC3&#x2032;, <italic>tmt1b</italic>-Forward: 5&#x2032; <underline>TAATACGA</underline> <underline>CTCACTATAG</underline>CAGTGGTCGTCCGAAAATGG 3&#x2032; and reverse: 5&#x2032; <underline>ATTTAGGTGACACTATAG</underline>GCGGTTCAAAGGG ATTACTGT 3&#x2032;.</p>
<p>To produce riboprobes for the visual opsins <italic>lws</italic> and <italic>rh2-1</italic>, we used as templates vectors previously described (<xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>). The pCRII-TOPO vector (Thermo Fisher Scientific, Pittsburgh, PA, USA) containing the target gene sequence was used as a template in a PCR reaction with M13 forward (5&#x2032; TAAAACGACGGCCAG-3&#x2032;) and M13 reverse (5&#x2032;-CAGGAAACAGCTATGAC 3&#x2032;) primers. The resulting amplicon contained the sequence of the gene of interest flanked by an upstream T7 promoter and a downstream SP6 promoter. Sense and antisense probes were produced using T7 and SP6 RNA polymerases, respectively. Riboprobe reaction was performed using DIG-labeling mix (Roche Diagnostics Deutschland GmbH, Mannheim, BW., GER.) and according to manufacturer&#x2019;s protocol (mMESSAGE mMACHINE Transcription kits, Ambion, Carlsbad, CA, USA).</p>
</sec>
<sec id="S2.SS5">
<title><italic>In situ</italic> hybridization</title>
<p><italic>In situ</italic> hybridization was performed according to previously established protocol (<xref ref-type="bibr" rid="B22">Lovell et al., 2013</xref>; <xref ref-type="bibr" rid="B4">Carleton et al., 2014</xref>; <xref ref-type="bibr" rid="B8">De Lima et al., 2015</xref>). Cryosections from heads <italic>A. anableps</italic> specimens were acetylated for 10 min in a solution of 0.33% acetic anhydride in DEPC-treated water, rinsed with 2&#x00D7; SSPE buffer (0.02 M EDTA and 2.98 M NaCl in 0.2 M phosphate buffer) and dehydrated in 70, 95, and 100% RNase-free ethanol. Each section was then hybridized with a solution (32 &#x03BC;L) containing 50% formamide, 2&#x00D7; SSPE, 1 &#x03BC;g/&#x03BC;l BSA, 1 &#x03BC;g/&#x03BC;L poly(A) (Sigma-Aldrich Corp., Milwaukee, WI, USA) in DEPC-treated water, and 1 &#x03BC;L of the DIG-labeled riboprobe. Slides were cover slipped, sealed by immersion in mineral oil, and incubated overnight at 65&#x00B0;C. Next, sections were rinsed in chloroform, de-cover slipped in 2&#x00D7; SSPE, and incubated serially in 2&#x00D7; SSPE/50% formamide, and in 0.1&#x00D7; SSPE at 65&#x00B0;C. Sections were then blocked for 30 min at RT in blocking buffer with 1% skim milk and incubated overnight with an alkaline phosphatase-conjugated anti-DIG antibody (Roche Diagnostics Deutschland GmbH, Mannheim, BW, Germany) Slides were washed twice for 15 min in TMN (100 mM Tris, pH 9.5; 150 mM NaCl, 0.05 M MgCl2), and incubated in a detection solution containing the alkaline phosphatase substrates Nitro-Blue Tetrazolium Chloride (NBT) (Roche Diagnostics Deutschland GmbH, Mannheim, BW, Germany). and 5-Bromo-4-Chloro-3-Indolyl-phosphate p-Toluidine Salt (BCIP) (Roche Diagnostics Deutschland GmbH, Mannheim, BW, Germany) Slides were washed overnight, fixed in 4% paraformaldehyde (dissolved in PBS) and cover slipped with Cytoseal (Thermo Fisher Scientific, Pittsburgh, PA, USA). Slides were imaged using a Nikon SMZ1500 microscope and processed on NIS-Elements D 4.10.01 program (Nikon Instruments Inc., Melville, NY, USA).</p>
</sec>
</sec>
<sec id="S3" sec-type="results">
<title>Results</title>
<sec id="S3.SS1">
<title>Non-visual opsins are expressed symmetrically in the developing eye of <italic>Anableps anableps</italic> prior to birth</title>
<p>Our previous work identified twenty non-visual and eleven visual opsins expressed during the development of the eye in the four-eyed fish (<xref ref-type="bibr" rid="B1">Beaudry et al., 2017</xref>; <xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>). Here, <italic>in situ</italic> hybridization was performed to examine the expression domains of three types of melanopsin subfamily of genes, <italic>opn4</italic>&#x00D7;<italic>1</italic>, <italic>opn4</italic>&#x00D7;<italic>2</italic>, <italic>opn4m3</italic>, and one type of teleost multiple tissue opsin, <italic>tmt1b</italic>, in the developing retina of pre-birth larvae. Our results showed that <italic>opn4</italic>&#x00D7;<italic>1, opn4</italic>&#x00D7;<italic>2, and tmt1b</italic> are expressed uniformly in the outer nuclear layer (ONL), inner nuclear layer (INL), and ganglion cell layer (GCL) in both dorsal and ventral regions of the retina (<xref ref-type="fig" rid="F2">Figures 2A&#x2013;D,G,H</xref>). The expression of <italic>opn4m3</italic> was not detected by <italic>in situ</italic> hybridization at stage 5 (<xref ref-type="fig" rid="F2">Figures 2E,F</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Non-visual opsin gene expression in the larval retina of <italic>Anableps anableps</italic>. <italic>In situ</italic> hybridizations for o<italic>pn4&#x00D7;1</italic> <bold>(A,B)</bold>, <italic>opn4&#x00D7;2</italic> <bold>(C,D)</bold>, <italic>opn4m3</italic> <bold>(E,F)</bold>, and <italic>tmt1b</italic> <bold>(G, H)</bold> were performed in eyes of larvae collected before birth. Sections of the dorsal retina are on the left, and ventral retina to the right. ONL, outer nuclear layer; INL, inner nuclear layer; GCL, ganglion cell layer. Scale bars: 0.05 mm.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-995469-g002.tif"/>
</fig>
</sec>
<sec id="S3.SS2">
<title>Expression domains of visual and non-visual opsins change upon different lighting conditions in juvenile <italic>Anableps anableps</italic></title>
<p>We have previously shown that in the <italic>A. anableps</italic>, asymmetric expression of <italic>lws</italic> and <italic>rh2.1</italic> in the dorsal and ventral regions of the retina, respectively, is established prior to birth in photoreceptor cells (<xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>). Here, we wanted to investigate the plasticity of visual and non-visual opsins in the retina upon changes in environmental lighting. To this end, juvenile fish were maintained in clear water for 30 days and surveyed for visual and non-visual opsin gene expression using RNA <italic>in situ</italic> hybridization.</p>
<p>In wild-caught juvenile <italic>A. anableps</italic> found in murky river water, the expression of <italic>opn4</italic>&#x00D7;<italic>1</italic> (<xref ref-type="fig" rid="F3">Figures 3A,B</xref>) and <italic>opn4</italic>&#x00D7;<italic>2</italic> (<xref ref-type="fig" rid="F3">Figures 3E,F</xref>) is restricted to the ONL and INL of the ventral retina while <italic>opn4m3</italic> and <italic>tmt1b</italic> are expressed in the INL, ONL and GCL of the ventral retina (<xref ref-type="fig" rid="F3">Figures 3I,J,M,N</xref>). We next used a 30-day light-induced cycle and assayed opsin gene expression. Our results showed that expression of <italic>opn4</italic>&#x00D7;<italic>1</italic> and <italic>tmt1b</italic>, restricted to the ONL and INL in the ventral retina in wild-caught fish, expands to the ONL, INL and GCL in the dorsal retina (<xref ref-type="fig" rid="F3">Figures 3C,D,O,P</xref>); <italic>opn4</italic>&#x00D7;<italic>2</italic> expression is lost in the entire retina (<xref ref-type="fig" rid="F3">Figures 3G,H</xref>) while <italic>opn4m3</italic> expression becomes sparse in the ONL, INL and GCL of the ventral retina (<xref ref-type="fig" rid="F3">Figures 3K,L</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Non-visual opsin gene expression in the juvenile retina of <italic>Anableps anableps</italic>. <italic>In situ</italic> hybridizations of <italic>opn4&#x00D7;1</italic> <bold>(A&#x2013;D)</bold>, <italic>opn4&#x00D7;2</italic> <bold>(E&#x2013;H)</bold>, <italic>opn4m3</italic> <bold>(I&#x2013;L)</bold>, and <italic>tmt1b</italic> <bold>(M&#x2013;P)</bold> were performed in <italic>A. anableps</italic>&#x2019; eyes from wild-caught juvenile fish under natural light conditions <bold>(A,B,E,F,I,J,M,N)</bold> and juveniles that were kept for 30 days in light exposure from above and below the water <bold>(C,D,G,H,K,L,O,P)</bold>. The panel shows sections of the dorsal retina and ventral retina. ONL, outer nuclear layer; INL, inner nuclear layer; GCL, ganglion cell layer; IS, photoreceptor inner segments; OS, photoreceptor outer segments. Scale bars: 0.05 mm.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-995469-g003.tif"/>
</fig>
<p>We next assayed the <italic>lws</italic> and <italic>rh2-1</italic> visual opsins, which show expression domains restricted to the dorsal and ventral retinas, respectively (<xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>). Upon light-induced exposure, <italic>in situ</italic> hybridization showed that <italic>lws</italic> expression remained in the photoreceptor layer of the dorsal retina, however, <italic>rh2-1</italic> expression expanded to the photoreceptor layer of ventral and dorsal retina territories (<xref ref-type="fig" rid="F1">Figures 1B</xref>, <xref ref-type="fig" rid="F4">4A&#x2013;D</xref> for reference).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Gene expression of visual opsins in the retina of juvenile <italic>A. anableps</italic> under light stimuli for 30 days. <italic>In situ</italic> hybridizations of <italic>rh2-1</italic> <bold>(A,B)</bold> and <italic>lws</italic> <bold>(C,D)</bold> in dorsal and ventral retinas from juveniles of <italic>A. anableps</italic>. Scale bars: 0.05 mm.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-995469-g004.tif"/>
</fig>
<p>Altogether, our results show that <italic>lws</italic> and <italic>rh2-1</italic> visual opsin expression is established without environmental light stimuli, prior to birth. However, changes in light input can modulate the expression of <italic>rh2-1</italic> and cause a shift the expression domain, from being restricted to the ventral retina, to being expanded to the entire retina. Non-visual opsins also show asymmetric expression in the nuclear layer of the retina in juvenile fish. Although established only after birth, changes in the environmental lighting caused a shift in the expression domains of <italic>opn4</italic>&#x00D7;<italic>1</italic>, <italic>opn4m3</italic>, and <italic>tmt1b</italic>, suggesting that both visual and non-visual opsins can be modulated by changes in the photic input.</p>
</sec>
</sec>
<sec id="S4" sec-type="discussion">
<title>Discussion</title>
<p>In this work, we surveyed the expression of three melanopsins <italic>opn4</italic>&#x00D7;<italic>1</italic>, <italic>opn4</italic>&#x00D7;<italic>2, opn4m3</italic>, and one <italic>tmt1b</italic> in the nuclear layers of the <italic>A. anableps</italic> retina. The spatial pattern observed pre-birth diverges from that seen in free-swimming juvenile individuals, which express <italic>opn4</italic>&#x00D7;<italic>1</italic> and <italic>opn4</italic>&#x00D7;<italic>2</italic> in the ONL and INL of the ventral retina while <italic>opn4m3</italic> and <italic>tmt1b</italic> are expressed in the INL, ONL and GCL of the ventral retina.</p>
<p>In zebrafish, melanopsin genes are expressed in different regions of the retina and have been associated with the regulation of negative phototaxis (<xref ref-type="bibr" rid="B26">Matos-Cruz et al., 2011</xref>; <xref ref-type="bibr" rid="B10">Fernandes et al., 2012</xref>). In teleost fish, the expression of melanopsin in various types of neuronal cells can directly influence retinal function in a dependent and/or independent way from intrinsically photosensitive retinal ganglion cells (<xref ref-type="bibr" rid="B26">Matos-Cruz et al., 2011</xref>). In other vertebrates, including teleost fish, <italic>tmt</italic> expression is distributed across many tissues including internal organs where light can hardly penetrate, suggesting that <italic>tmt</italic> opsin may have both photosensitive and non-photosensitive functions (<xref ref-type="bibr" rid="B12">Fischer et al., 2013</xref>; <xref ref-type="bibr" rid="B32">Sakai et al., 2015</xref>). In our work, we speculate that light-induced changes in non-visual opsins expression could be due to the indirect regulation of visual opsins in the photoreceptor cells of the retina.</p>
<p>Previous studies from our group and others have shown asymmetric expression of <italic>lws</italic> and <italic>rh2.1</italic> in the photoreceptor cells in the dorsal and ventral domains of the developing retina, respectively, with the establishment of asymmetric expression of <italic>lws</italic> and <italic>rh2.1</italic> occurring before birth, suggesting that it is genetically programmed and independent of light stimuli (<xref ref-type="bibr" rid="B29">Owens et al., 2012</xref>; <xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>). This asymmetry allows the partial duplicated eye of the <italic>A. anableps</italic> to optimize the absorption of different wavelengths coming simultaneously from the aerial and aquatic environment. In this work, we manipulated light input by changing the turbid water where the <italic>A. anableps</italic> is normally found and replacing it with clear water. We tested the plasticity of <italic>lws</italic> and <italic>rh2.1</italic> in the photoreceptor cells in the retina of juvenile fish after a 30 day period and our results showed that, despite being established before light stimuli reach the retina (<xref ref-type="bibr" rid="B31">Perez et al., 2017</xref>), the expression of <italic>rh2.1</italic> (normally expressed in the ventral retina) shifted and became uniformly expressed in the entire retina, while the expression of <italic>lws</italic> remained unchanged and restricted to the photoreceptor cells in the dorsal retina. While in captivity, animals were maintained in tanks with average temperature of 28&#x00B0;C, which closely mirrors that of their natural environment. The commercial diet provided for the animals in captivity, however, differs from their diet in natural settings. In the wild, the stomach content of <italic>A. anableps</italic> ranges from micro and macroalgae, insects, crustaceans, molluscs, fishes, to mud and detritus (<xref ref-type="bibr" rid="B11">Figueiredo et al., 2019</xref>). While we cannot rule out a potential feeding behavior of food content impact on opsin gene expression, we have no knowledge of a documented link between the former and the latter.</p>
<p>In zebrafish and guppies, the expression patterns of different subtypes of <italic>rh2</italic> and <italic>lws</italic> vary according to the developmental stage and region of the retina (<xref ref-type="bibr" rid="B37">Takechi and Kawamura, 2005</xref>; <xref ref-type="bibr" rid="B29">Owens et al., 2012</xref>). Several studies have demonstrated that opsin expression is subject to phenotypic plasticity (<xref ref-type="bibr" rid="B15">Fuller et al., 2005</xref>; <xref ref-type="bibr" rid="B36">Shand et al., 2008</xref>; <xref ref-type="bibr" rid="B41">Veen et al., 2017</xref>). Several teleost species placed under altered light conditions, such as damsel and cardinal fish (<xref ref-type="bibr" rid="B23">Luehrmann et al., 2018</xref>), African cichlids (<xref ref-type="bibr" rid="B44">Wright et al., 2019</xref>), guppies (<xref ref-type="bibr" rid="B21">Kranz et al., 2018</xref>), and Senegalese sole (<xref ref-type="bibr" rid="B13">Frau et al., 2020</xref>) can alter the expression of opsin genes to adapt to the environmental changes. Here we show that shift in opsin expression happens in the dorsal and ventral domains of the retina in <italic>A. anableps</italic> within a 30-day period, our results do not exclude the possibility that the change in the expression pattern of opsin genes occurs in a shorter period. Here, we show that after a 30-day period of exposure to clear water, opsin expression changes in the dorsal and ventral retinas, given that, this shift happens in portions of the retina for both visual and non-visual opsin genes, our results suggest that the regulatory control of the expression of opsins in the eye of the <italic>A. anableps</italic> is complex and compartmentalized in the dorsal and ventral retinas.</p>
</sec>
<sec id="S5" sec-type="conclusion">
<title>Conclusion</title>
<p>Our study shows that the expression of visual opsins in the retina of <italic>A. anableps</italic> can be modulated by spectral and intensity changes in ambient light. These adjustments allow for a quick adaptation of the visual system to different water turbidity and environmental luminosity. Our findings indicate that the <italic>A. anableps</italic> exhibits great potential to modulate its vision according to the environment, allowing this organism to adjust its vision to different photic conditions. Furthermore, our findings suggest that the expression of non-visual opsins can also be altered upon changes in environmental light, suggesting a regulatory correlation between visual and non-visual opsin regulation of physiological functions responsive to light.</p>
</sec>
<sec id="S6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="S7">
<title>Ethics statement</title>
<p>This study was approved by IBAMA/SISBIO under license number 47206-1 and the Ethics Committee for Animal Research at the Universidade Federal do Par&#x00E1; (protocol number 037-2015).</p>
</sec>
<sec id="S8">
<title>Author contributions</title>
<p>DS, MA, JL, LP, and PS designed the research. LP, MA, JL, and BM performed <italic>in situ</italic> hybridizations (ISH) of <italic>A. anableps</italic> larvae. RR and JS designed the riboprobes for ISH. DS and LP performed light-induced experiments and analysis. DS, LP, and PS wrote the manuscript with input from BM, MA, JL, RR, and JS. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<ack><p>We thank Jeferson Carneiro and Karen Pinto for help in fish collection. We also thank Iracilda Sampaio for logistical support at the collection site. We would also like to thank Igor Schneider for critical reading of the manuscript.</p>
</ack>
<sec id="S9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="S10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="S11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fnins.2022.995469/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fnins.2022.995469/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Image_1.TIF" id="FS1" mimetype="image/tiff" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 1</label>
<caption><p><italic>In situ</italic> hybridization showing the sense control riboprobes for the non-visualopsins: <italic>opn</italic>4&#x00D7;1, <italic>opn</italic>4&#x00D7;2, <italic>opn4m3</italic>, <italic>tmt1b</italic>.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Image_2.TIF" id="FS2" mimetype="image/tiff" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 2</label>
<caption><p><italic>In situ</italic> hybridization showing the sense control riboprobes for thevisual opsins <italic>lws</italic> and <italic>rh2-1</italic>.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Video_1.MOV" id="VS1" mimetype="video/quicktime" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Video 1</label>
<caption><p>A group of five <italic>Anableps anableps</italic> specimens in the wild. Movie was recorded in the estuarine region of Bragan&#x00E7;a, Par&#x00E1;, Brazil (0&#x00B0;53&#x2032;27.6&#x2033;S 46&#x00B0;39&#x2032;21.9&#x2033;W).</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Video_2.MOV" id="VS2" mimetype="video/quicktime" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Video 2</label>
<caption><p>A fish tank with <italic>Anableps anableps</italic> specimens during the 30-day light induced experiments.</p></caption>
</supplementary-material>
</sec>
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