Differential Angiogenic Gene Expression in TP53 Wild-Type and Mutant Ovarian Cancer Cell Lines

Objectives: Underlying mechanisms regulating angiogenesis in ovarian cancer have not been completely elucidated. Evidence suggests that the TP53 tumor suppressor pathway and tumor microenvironment play integral roles. We utilized microarray technology to study the interaction between TP53 mutational status and hypoxia on angiogenic gene expression. Methods: Affymetrix U133A arrays were analyzed for angiogenic gene expression in 19 ovarian cancer cell lines stratified both by TP53 mutation status and A2780 wild-type (wt) TP53 vs. mutated (m) TP53 cell lines after treatment under hypoxic conditions or with ionizing radiation. Results: Twenty-eight differentially expressed angiogenic genes were identified in the mTP53 cell lines compared to wtTP53 lines. Five genes were upregulated in mTP53 cells: 40% involved in extracellular matrix (ECM) degradation [matrix metalloproteinase 10 (MMP10)/15] and 60% in angiogenesis (fibroblast growth factor receptor 3/VEGFA/ephrin receptor-B4). Twenty-three genes were upregulated in wtTP53: nearly 22% were ECM constituents or involved in ECM degradation; over 40% were growth factors or mediators of angiogenesis. Five genes were upregulated in the A2780mTP53 cells: 40% involved in ECM remodeling (MMP10, ADAMTS1), 40% with pro-angiogenic activity (EFNB2, factor 2 receptor), and 20% with anti-angiogenic properties (ADAMTS1). Three genes were upregulated in hypoxia treated cells compared to controls: one with anti-angiogenic activity (angiopoietin-like 4) and two with pro-angiogenic activity (VEGFA, EFNA3). No significant gene fold changes were noted after exposure to radiation. Four genes continued to demonstrate significant differential expression (p ≤ 0.05) after adjusting for multiple comparisons. These genes included endoglin upregulation in wt lines (pro-angiogenesis) and upregulation of FGF20 (growth factor), ADAMTS1 (anti-angiogenesis) and MMP10 (ECM degradation) in mTP53 cell lines. Conclusion: Our exploratory findings indicate that non-overlapping angiogenic pathways may be altered by TP53 mutations and hypoxic conditions in the tumor microenvironment. Further evaluation is needed for confirmation.


INTRODUCTION
The underlying mechanisms that regulate angiogenesis in ovarian cancer have yet to be elucidated but most likely involve interactions controlled by tumors and their microenvironment. Angiogenesis is a complex multistep process that includes increased vascular permeability and dilation followed by extracellular matrix (ECM) degradation; subsequent endothelial cell proliferation and migration; formation of endothelial tubes; and recruitment of pericytes to support the neovasculature. Both tumor and host tissues produce angiogenic factors that influence endothelial cell development and migration (1). The vascular endothelial growth factor (VEGF) family (VEGF-A, -B, -C, FIGF) and fibroblast growth factor 2 (FGF2) are fundamental growth factors in the process of angiogenesis with VEGF-A having the most pro-angiogenic activity. VEGF promoter activity,VEGF mRNA levels, and FGF2 mRNA expression have been shown to be downregulated by wild-type (wt) TP53 (2)(3)(4). In mutant (m) TP53 it has been demonstrated that hypoxia inducible factor 1 (HIF1) dependent transcriptional www.frontiersin.org activation of VEGF gene expression has been enhanced (2). TP53 dysfunction has also been associated with increased tumor angiogenesis based on microvessel density (MVD) by immunohistochemistry (IHC) (5,6). These findings indicate that TP53 may play a role in the regulation of angiogenesis in ovarian cancer.
Hypoxic conditions in the tumor microenvironment have been shown to stimulate angiogenesis in prostate (7), breast (7), melanoma (8), and renal cancer (9). As the distance from tumor to blood supply is increased, the leading edge of the tumor becomes hypoxic, and in turn, induces the expression of the HIF1/hypoxia regulatory element (HRE) complex, a key transcription factor. HIF1α is considered a key regulator of angiogenic factors. HIF1/HRE is responsible for increased gene expression of numerous genes involved in angiogenesis, cell proliferation, and matrix metabolism (10).
In order to investigate the interaction between tumor molecular biology and the microenvironment on the regulation of angiogenesis in ovarian cancer, we utilized genome-scale molecular technology. Our results can enhance our understanding of the molecular profiles of ovarian cancer tumor microenvironment and link crucial processes such as angiogenesis, hypoxia, and perfusion; all of which are established factors in tumor aggressiveness and resistance to therapy. Our primary objective was to determine if angiogenic genes are differentially expressed in ovarian cancer cell lines containing wt vs. mTP53 genes. We also sought to investigate angiogenic gene expression patterns after simulated induction of TP53 and hypoxia-related pathways. Our goal was to identify novel angiogenic targets that may be exploited for therapeutic purposes.

OVARIAN CANCER CELL LINES
Eighteen immortalized ovarian cancer cell lines maintained by the Duke Gynecologic Oncology research labs ( Table 1) were sustained in monolayer culture in RPMI 1640 with 10% fetal bovine serum, sodium pyruvate, glutamine, and non-essential amino acids in 5% CO 2 humidified chambers. Cell line authentication was performed using the AmpFlSTR® Identifiler® Plus PCR Amplification Kit (Applied Biosystems, Carlsbad, CA, USA) at the University of Colorado Cancer Center, DNA Sequencing, and Analysis Core (11). The STR genotypes of ovarian cancer cell lines that are available from the American Type Culture Collection or the RIKEN BioResource Center Cell Bank were identical to the source genotypes as reported within their respective STR databases and all other non-commercially available cell lines were shown to be derived from females with unique genotypes. The A2780wtTP53 and A2780mTP53 cell lines were obtained from Professor Robert Brown B.Sc., Ph.D., of the Department of Medical Oncology, University of Glasgow. Protein extractions were performed as previously described (12). All experiments were performed in duplicate or quadruplicate with appropriate controls.

HYPOXIA AND RADIATION TREATMENT OF CELL LINES
A2780 cell lines were grown to 80% confluence in T150 flasks and exposed to hypoxic conditions using 5% O 2 in a Bactron Anaerobic Chamber (Sheldon Manufacturing, Cornelius, OH, USA) for 8 or 24 h prior to harvesting. For radiation exposure, the A2780wtTP53

MICROARRAY SAMPLE PREPARATION
Total RNA was used for probe generation and hybridization to Affymetrix U133A GeneChip arrays as has been described previously in detail (13,14). The microarray data was screened to select for 378 probe sets belonging to angiogenic candidate genes on the array, based on literature review. Expression patterns were compared between: (1) wtTP53 vs. mTP53 ovarian cancer cell lines; (2) hypoxia treated and untreated controls using the A2780wtTP53 and A2780mTP53 cell lines; (3) radiated A2780wtTP53 after 8 h of exposure and untreated controls. The 8-h sample was chosen because p53 protein expression after radiation exposure was highest between 6 and 8 h (Figure 1).

STATISTICAL METHODOLOGIES
Microarray expression was calculated using the robust multiarray average (RMA) algorithm implemented in the affy package (15) of the Bioconductor (16) extensions to the R statistical programming environment (http://www.R-project.org). RMA generates a background-corrected and quantile-normalized measure of expression on the log2 scale of measurement. The ovarian cancer cell line data, and that generated from the different A2780 conditions, were each analyzed separately in this manner. For each probe set on the array, we used a moderated T -statistic from the limma package (17) to identify differential expression between the wt and mTP53 genotypes. To identify differential expression between the wt and mutant TP53 A2780 cell lines, hypoxia treated cells, and radiated cells, we fit a three way analysis of variance (ANOVA) model with fixed effects for genotype, treatment, and batch for each probe set on the array. Thus genotype effects are treatment and batch corrected, while treatment effects are genotype and batch corrected. The untreated A2780wtTP53 samples served as the baseline for this analysis. The Holm-Bonferroni method was used to correct for multiple hypothesis testing. Candidate genes with an unadjusted p-value <0.05 and an absolute value log2 fold change (L2FC) >1.0 were identified. With these candidate genes, a two-sample t -test was used to analyze the gene expression data available in The Cancer Genome Atlas (TCGA) database. The Benjamini-Hochberg method was used to control the false discovery rate. Clustering of genes for heatmap presentation was done using a correlation distance metric on the z-score normalized expression values.

ANGIOGENIC-RELATED GENE EXPRESSION IN OVARIAN CANCER CELL LINES
Eighteen ovarian cancer cell lines with known TP53 genotype (wt vs. m) were analyzed ( Table 1). Of the 378 angiogenic candidate gene probes identified during literature review, 28 (7.4%) were found to be differentially expressed in cell lines with wt vs. mTP53 genotype status (Table 2; Figure 2). Five genes (five probe sets) were considered upregulated in the mTP53 cell lines compared to those with a wtTP53 gene given our initial threshold of a pvalue ≤0.05 and an absolute value L2FC ≥1. This list includes fibroblast growth factor receptor 3 (FGFR3) (7.0 FC), matrix metalloproteinase 10 (MMP10) (5.7 FC), VEGFA (3.2 FC), MMP15 (2.5 FC), and ephrin receptor-B4 (EPHB4) (2.0 FC). After correcting for multiple hypothesis testing, none of the genes were considered significant at an adjusted p-value <0.05.

Hypoxia exposure
Hypoxia treatment did not increase p53 protein expression (Figure 3). A small increase in p21 protein expression was noted in the TP53 mutant at the 8-h timepoint. This, however, was not sustained at 24 h (Figure 3). Three angiogenic genes were upregulated in hypoxia treated A2780mTP53 cells when compared to A2780wtTP53 controls, including VEGFA (3.5 FC), ANGPTL4 (2.8 FC), and ephrin A3 (EPHA3) (2.1 FC) (Table 3; Figure 4). No genes were identified as upregulated in the A2780wtTP53 when exposed to hypoxia.

Radiation exposure
TP53 protein expression increase seen at 4 h, with greatest increase at 6-8 h (both mutant and wt), and induction sustained to 48 h. p21 showed a similar induction of expression, starting at 4 h and sustained to 48 h, in both wt and mutant cell lines (Figure 1). Exposure to radiation did not yield any significant differentially expressed genes when comparing the A2780mTP53 cells to A2780wtTP53 controls.

TCGA DATABASE
The 36 candidate genes were then investigated using cell line data available through the TCGA database. Given that the majority of ovarian cell lines in the database had missing or discordant TP53 status, we looked at cell lines from multiple solid tumor types. Again, after accounting for inconclusive TP53 status and those without gene expression data, 44 cell lines were available for analysis. mRNA expression data between mutant and wt TP53 was then  compared. There was not a significant difference in expression between the two groups for any of the candidate genes, though NRP2 (upregulated in wt; p = 0.06) and MMP10 (upregulated in mutant; p = 0.09) trended toward significance.

DISCUSSION
Understanding the underlying molecular and environmentally responsive pathways driving angiogenesis can provide important insight into the regulation of tumor angiogenesis, development of resistance to VEGF-blocking agents and may assist in the identification of novel targets to exploit in the development of anti-angiogenic therapies. Our exploratory analysis indicates that the regulation of angiogenesis is complex and may be under the control of both TP53-dependent pathways and hypoxic conditions. Furthermore, many of the genes identified are involved in multiple facets of the angiogenic process, such as ECM degradation and remodeling; endothelial cell activation, migration, and adhesion. While our data are exploratory in nature, there were four genes that continued to demonstrate significant differential expression even after adjusting for multiple comparisons. These four differentially regulated genes included ENG (upregulated in wt) and FGF20, ADAMTS1, and MMP10 (upregulated in mutant). Matrix metalloproteinase 10 encodes a member of the matrix metalloproteinase family of proteins that is responsible for basement membrane degradation. MMPs are cysteine proteases with zinc ion-dependent proteolytic activity that are involved principally in the degradation of the ECM and subsequent tissue remodeling (18)(19)(20). Our findings indicate that the intact TP53 tumor suppressor pathway may exert control via the regulation of proteins involved in the ECM. The destruction of the basement www.frontiersin.org FIGURE 2 | Heat map representing color-coded expression of differentially expressed genes in 18 different wild-type or mutant TP53 cell lines. Twenty-eight genes exhibited statistically significant differential expression by microarray analysis based on TP53 status. membrane and the ECM is a fundamental step in the process of tumor angiogenesis. Forty percent of the upregulated genes identified in the mutated TP53 cell lines were involved in ECM degradation (MMP10 and MMP15). MMPs are also upregulated in response to cytokines, hormone, and growth factors, including VEGF (21)(22)(23). Conversely, MMPs can also regulate the activity of various growth factors, again including VEGF (24), as well as chemokines, cytokines, and cell surface adhesion receptors. These components are involved in cell migration and intracellular communication that are directly implicated in wound healing, angiogenesis, tumor progression, and metastasis (18-20, 25, 26). The induction of MMP15 (also known as membrane-type-2 MMP) has been shown to positively correlate with ovarian tumor metastases in murine xenographs (27). MMP15 has also been postulated to have a role in anti-apoptotic pathways, though the precise mechanisms remain unknown (28). MMP10 was also significantly upregulated in mutant A2780 TP53 vs. wt cell lines and marginally upregulated in the TCGA mutant TP53 vs. wt cell lines. Furthermore, MMP10 has been shown to be highly expressed in breast (29), prostate (30), and cervical cancer (31). Compared to epithelial ovarian cancer (EOC), TP53 mutations in these particular malignancies are much less common (32). In a study of head and neck squamous cell malignancies, TP53 mutations were strongly associated with MMP-9 overexpression with a subsequent increase in mean vessel density (33) while elevated p53 levels were associated with decreased MMP-2 levels in patients with invasive breast cancer (34). The notable upregulation of a number of members of the MMP family in mutated TP53 cell lines indicates that deregulation of the TP53 pathway may play an integral role in ECM remodeling during tumor angiogenesis.
We found that several members of the FGF pathway exhibited differential expression. This pathway is comprised of over 20 ligands and 4 tyrosine kinase receptors (FGFRs). Selected FGF growth factors activate the FGFRs in conjunction with heparan sulfate proteoglycans leading to the regulation of cell differentiation, angiogenesis, cell motility, invasion, and survival (35). FGF20 was recently identified and may have a potential role in tumor growth and metastasis (36). Forced expression of FGF20 resulted in increased DNA synthesis, cellular proliferation, in vitro transformation, and in vivo tumor growth (36). There is conflicting data regarding FGF20 expression in ovarian cancer. Our data indicated that FGF20 is expressed in ovarian cancer cell lines and was upregulated in the A2780mTP53 ovarian cancer cells compared to the A2780wtTP53 cells. However, in the study conducted by Jeffers et al. FGF20 mRNA was not expressed in normal ovarian tissue or the six studied ovarian cell lines (OVCAR3, SKOV3, OVCAR4, OVCAR5, IGROV1, OVAR8) (36). In contrast, Chamorro et al. reported that FGF20 is significantly elevated in EOC cells harboring mutations in the WNT/B-catenin signaling pathway (37). FGFR3 expression may also have an important role in cancer progression. Our data show a sevenfold increase in FGFR3 expression in mutant TP53 lines, consistent with Kim et al.'s finding that inhibition of FGFR3 increased target cell apoptosis and decreased resistance to targeted drug therapy (38). FGFR3 overexpression has also been correlated with shorter disease free intervals and overall survival in patients with subtypes of bladder malignancies (39).
In contrast, we found that FGF2 was upregulated in A2780 wt TP53 (5.3 FC) compared to mutant cells. We previously reported that relative high FGF2 protein expression was associated with a significant decreased risk of disease progression and death in women with advanced ovarian cancer treated with taxane and platinum-based therapy. Upon multivariate analysis, however, the association between FGF2 and clinical outcome was no longer significant (40). In addition, we did not detect an association between FGF2 expression and TP53 mutation status or protein expression (40). In our prior study of FGF2, we used immunoblot technology and were unable to assess whether FGF2 is located in the stromal or cellular compartment. Our current study evaluated FGF2 only in cell lines and does not account for stromal expression of FGF2 protein. FGF/FGFR signaling is  (41). These findings highlight limitations with our microarray analysis. A single microarray analysis cannot capture transcription variances or translational protein alterations. Further exploration is needed to determine if the TP53 pathway is involved in the coordinated regulation of FGF family members. Our paper is the first to report a potential relationship between TP53 mutation status and ADAMTS1 expression in ovarian cancer. In our study, ADAMTS1 was found to be upregulated in A2780mTP53 cell lines compared to wt. ADAMTS1 is active in ECM degradation and remodeling (42,43) and has been implicated in normal ovarian follicular development (44). Collagen IV, as well as other basement membrane structural proteins, are poorly organized in ADAMTS1 null ovaries (43). ADAMTS1 may also play a role in ovarian medullary vascular development (44) and its absence leads to a delay in lymphatic development (43). Conflicting evidence exists regarding ADAMTS1 expression in malignancy. A study by Freitas et al. reported decreased ADAMTS1 expression in primary breast malignancies with forced knockdown stimulating migration and invasion of tumor cells in vivo (45). In contrast, others have reported significant upregulation in breast malignancies with subsequent increase in metastatic activity (46,47). These contrasting findings may result from the auto-proteolytic cleavage of ADAMTS1 with subsequent disparate effects on tumor activity -the full length molecule displays protumor properties while its cleavage products, ADAMTS-1NTF and ADAMTS-1CTF, exhibit anti-tumor activity. This cleavage process is regulated by the rates of production and degradation of heparin www.frontiersin.org sulfate proteoglycans in the tumor microenvironment (48). Our findings suggest that ADAMTS1 regulation may also be controlled via the TP53 pathway.
In contrast to the previous candidate genes with upregulation in mutant lines, ENG was upregulated in the wtTP53 cell lines. ENG (CD105) is a membrane protein overexpressed in tumor-associated endothelial cells and is a marker of proliferating endothelial cells and surrogate for tumor angiogenesis. ENG downregulation in human EOC lines results in decreased vascular proliferation (49). Ziebarth et al. demonstrated that forced ENG inhibition resulted in decreased cell viability, increased apoptosis, induced double-stranded DNA damage, and increased cisplatin sensitivity in ovarian cancer cell lines (50). In our study, ENG was upregulated in the wt TP53 cell lines and was a surprising finding given the association between increased ENG staining in MCV or tumor-associated endothelial cells and advanced stage disease, suboptimal cytoreduction (51), and increased disease progression (52,53). There are conflicting results regarding the association between ENG and survival (51,54,55). High ENG expression in combination with high transforming growth factor B levels prior to chemotherapy have been associated with improved overall survival (55) while others have reported either decrease survival for those with the highest levels of ENG expression (51,53) or no relationship at all (54). Previously, we used ENG staining to determine MVD. We did not find an association between ENG MVD and TP53 gene mutation status or protein expression (52). The difference between our two studies may be due to the disparate study design (cell lines vs. tumor tissue) and/or methodology (gene vs. protein expression; which may not correlate) as well as the amount of stromal tissue included in the tumor tissues. Our current study evaluating ENG in cell lines alone does not account for stromal expression of ENG protein in the microvasculature. The association between ENG expression and TP53 status in cell lines suggests that ENG may be regulated by the TP53 pathway, though other regulatory mechanisms may also exist.
Our data also demonstrated differential regulation of other well known angiogenic genes in the mTP53 cell lines. Most notably, VEGFA was upregulated in the mTP53 cell lines and under hypoxic conditions demonstrating the convergence of the VEGF pathway by both mechanisms. VEGFA is known to be one of the most potent pro-angiogenic factors. There is conflicting literature regarding TP53 status and association with VEGF protein expression in ovarian cancer specimens. Horiuchi and colleagues reported no association between p53 and VEGF protein expression in ovarian cancers using IHC (56). Previously, we reported an association between p53 protein overexpression and low VEGF protein expression in advanced ovarian cancer specimens, but no association between VEGF and TP53 mutation status (40). Upon further assessment, we found that the association between p53 and VEGF protein expression was limited to the ovarian cancers that contained a wt TP53 gene and lacked p53 protein expression (40). The lack of VEGFA induction with ionizing radiation suggests that higher VEGFA expression may be associated with TP53 mutations, but that TP53 may not be regulating VEGFA expression. In contrast, the VEGF pathway may be primarily regulated via hypoxic conditions in the tumor microenvironment rather than by TP53. It is well established in the literature that hypoxic conditions increase VEGF expression (5,10,56,57) with expression increasing after exposure to hypoxia regardless of TP53 pathway status. This suggests that hypoxia has a dominant role in VEGF regulation (57).
Furthermore, other members of the VEGF family, such as VEGFC and NRP1 and NRP2, were all upregulated in the cell lines harboring wtTP53 compared to those with a mutant gene. NRP2 was also marginally upregulated in the TCGA wt TP53 cell lines compared to mutant cell lines. VEGFC is an integral part of lymphangiogenesis and has been associated with lymph node metastases and prognosis in a variety of malignancies (58)(59)(60)(61). NRP1 and NRP2 interact with both VEGF ligands and class 3 semaphorin (SEMA3) ligands in overlapping binding domains (62). While VEGF promotes angiogenesis and interacts with NRP1 to enhance the binding to its receptor, members of the SEMA3 family inhibit angiogenesis (63). Specifically, SEMA3F binding to NRP2 inhibits tumor angiogenesis and metastasis (63). NRP overexpression has been reported in multiple solid malignancies including breast, gastrointestinal, and prostate tumors (63). Conflicting evidence exists regarding NRP expression in ovarian tumors. Bednarek et al. studied NRP1 expression in 50 patients with EOC, the majority of which had weak (n = 13) or no (n = 22) immunohistochemical staining (64). In contrast, Baba et al. reported that 97% of EOC tissue samples and 67% of cell lines stain strongly (65). Recently, Stanton and colleagues reported that the VEGFC-NRP2 axis promoted autophagy, which, in cancer, may represent an adaptive response to promote cell survival (62).
Members of the ephrin family were also differentially expressed in the cell lines and after exposure to hypoxia. The genes encoding the ligand EFNB2 and the receptor EPHB4 were upregulated in mutant TP53 cells; EFNB2 was upregulated in the A2780 line and EPHB4 was upregulated in the larger pool of mutant TP53 lines. In contrast, the ephrin receptor, EPHB2, was upregulated in wt TP53 cell lines while overexpression of the ligand, EFNA3, was induced by hypoxia. Ephrin and the ephrin receptors are a family of membrane-bound tyrosine kinases and receptor tyrosine kinases (RTKs) that are typically highly promiscuous; most of the receptors are capable of binding to numerous ephrin ligands (66,67). Since both receptors and ligands are membrane-bound, the receptor ligand interactions are capable of bi-directional signaling (67). Members of the ephrin RTK family are expressed on both tumor cells as well as the tumor endothelium and fibroblasts (68,69). Data from targeted disruption of Eph RTKs and ligands in mice have revealed that the ephrin pathway plays a critical role in embryologic vascular development and tumor angiogenesis (70). EFNA1 and EFNB2 are regulated by TP53 as well as other members of the TP53 family, including p73 and p63 (71,72). Hypoxia upregulates both mRNA and protein expression of EPHB4, EFNB2, EPHA2, and EFNA1 (73). EPHB4 RTK is expressed in 86% of invasive ovarian cancers and was associated with advanced stage, worse survival (74), and decreased response to chemotherapy (66). EFNB1, an alternate ligand of EPHB4, has been associated with increased MVD in EOC (75). The precise mechanism of ephrinmediated angiogenesis is unknown, but our data indicate that both the TP53 tumor suppressor pathway and hypoxia may effect ephrin family members.
In addition, we have evaluated our panel of angiogenic genes in women with advanced, high grade serous ovarian carcinoma whose tumors had undergone microarray analysis. We conducted an extreme phenotype study that included women with long survival (>7 years) vs. short survival (<3 years) (76). Thirty-one genes were significantly associated with clinical outcome including several of the genes reported in our current study (CD44−, EPHB2, HIF1A, NRP1, and TGFA). Of these, high CD44 was associated with longer survival in the TCGA database. In contrast, high expression of EPHB2 and NRP1 were associated with shorter survival in an external database (76). Microarray analysis of cell lines may potentially identify genes that have prognostic significance for survival.
Limitations of our study include the use of a simple model of ionizing radiation to simulate TP53 induction (77,78). To validate our model, we irradiated ovarian cancer cell line OVCA420 to 5 Gy and then subjected cell lysates to immunoblot to assess total p53 expression. When compared to non-irradiated cells, irradiated cells demonstrated a 3.3-fold increase in p53 protein expression 48 h after exposure (Figure 1). We acknowledge that ionizing radiation likely induces other genes in addition to TP53 and these unidentified genes may also play a role in angiogenesis. The in vitro nature of this investigation limits the application of these results to more complex systems such as living organisms. Specifically, cell lines lack the adjacent stroma that is integral to evaluate mesenchymal remodeling, and tumor angiogenesis was not assessed in this model. Another limitation of our study is that while a number of genes showed a significant change in expression, most were no longer significant after correcting the p-values for multiple hypothesis testing. Thus, further verification by another methodology is necessary to establish that these genes are in fact differentially expressed and not the result of statistical error. Our study incorporates data from cell lines of various epithelial ovarian histologies. Though it is well known that an overwhelming majority of serous type tumors possess TP53 mutations, a study by the Gynecologic Oncology Group suggests p53 overexpression may be seen in one-third of mucinous or clear cell histologies while over 70% of tumors deemed "other" also possess p53 overexpression (79).

www.frontiersin.org
Despite these limitations the data generated from this study confirmed the complexity of angiogenesis regulation and the presence of convergent and divergent pathways controlled via TP53-dependent and independent mechanisms representing how genetic mechanisms and environmental conditions interact to promote a pro-angiogenic environment. Identification of multiple members of the VEGF, FGF, MMP, and ephrin families as well as other novel genes in our series indicates the existence of multiple regulatory mechanisms involved in tumor angiogenesis. The most differentially expressed genes in our panel represent appealing therapeutic targets that may be exploited to develop anti-angiogenic therapies.