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MINI REVIEW article

Front. Oncol., 13 January 2022
Sec. Molecular and Cellular Oncology
This article is part of the Research Topic RNA and RNA Modification in the Pathogenesis, Diagnosis and Treatment of Cancers View all 27 articles

A Review on the Role of SPRY4-IT1 in the Carcinogenesis

  • 1Department of Medical Genetics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
  • 2Men’s Health and Reproductive Health Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran
  • 3Skull Base Research Center, Loghman Hakim Hospital, Shahid Beheshti University of Medical Sciences, Tehran, Iran
  • 4Department of Critical Care Medicine, Imam Hossein Medical and Educational Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran

Sprouty RTK signaling antagonist 4-intronic transcript 1 (SPRY4-IT1) is a long non-coding RNA (lncRNA) encoded by a gene located on 5q31.3. This lncRNA has a possible role in the regulation of cell growth, proliferation, and apoptosis. Moreover, since SPRY4-IT1 controls levels of lipin 2, it is also involved in the biosynthesis of lipids. During the process of biogenesis, SPRY4-IT1 is produced as a primary transcript which is then cleaved to generate a mature transcript which is localized in the cytoplasm. SPRY4-IT1 has oncogenic roles in diverse tissues. A possible route of participation of SPRY4-IT1 in the carcinogenesis is through sequestering miRNAs such as miR-101-3p, miR‐6882‐3p and miR-22-3p. The sponging effect of SPRY4-IT1 on miR-101 has been verified in colorectal cancer, osteosarcoma, cervical cancer, bladder cancer, gastric cancer and cholangiocarcinoma. SPRY4-IT1 has functional interactions with HIF-1α, NF-κB/p65, AMPK, ZEB1, MAPK and PI3K/Akt signaling. We explain the role of SPRY4-IT1 in the carcinogenesis according to evidence obtained from cell lines, xenograft models and clinical studies.

Introduction

SPRY4 Intronic Transcript 1 (SPRY4-IT1) is a long non-coding RNA (lncRNA). This transcript is encoded by a gene on the cytogenetic band 5q31.3. During the process of biogenesis, SPRY4-IT1 is produced as a primary transcript which is then cleaved to generate a mature transcript which is localized in the cytoplasm (1). Since the complete size and structure of the primary and cleaved transcripts of SPRY4-IT1 are not clear, it has been speculated that the primary transcript is an alternatively spliced variant of SPRY4 (https://www.ncbi.nlm.nih.gov/gene/100642175).

A pioneer study in this field has suggested that SPRY4-IT1 is originated from an intronic region of the SPRY4 gene. In silico studies have predicted that SPRY4-IT1 has numerous long hairpins in its secondary configuration. Based on the results of RNA-FISH experiments in the melanoma cells, SPRY4-IT1 is mainly localized in the cytoplasm. Since SPRY4-IT1 silencing has altered growth, differentiation, and apoptosis in melanoma cells, it has been suggested that SPRY4-IT1 has a role in the etiology of melanoma (2). Subsequent studies have provided further evidence for participation of SPRY4-IT1 in other types of cancers as well. In normal cells, this lncRNA can regulate cell cycle progression and cell proliferation. In the current review, we explain the role of SPRY4-IT1 in the carcinogenesis based on evidence obtained from cell lines, xenograft models and clinical studies.

Cell Line Studies

SPRY4-IT1 has been found to up-regulated in colorectal cancer cells. SPRY4-IT1 regulates growth and glycolysis of these cells through enhancing expression of PDK1. SPRY4-IT1 has affected glucose intake, lactic acid synthesis, and levels of ATP in colorectal cancer cells (3). SPRY4-IT1 has also been demonstrated to increase proliferation, migratory potential and invasiveness of colorectal cancer cells. Most notably, SPRY4-IT1 enhances expression of epithelial-mesenchymal transition (EMT)-associated genes. Mechanistically, SPRY4-IT1 negatively regulates expression of miR-101-3p in these cells through binding with this miRNA (4). SPRY4-IT1 up-regulation in a colorectal cancer cell line has resulted in differential expression of several genes among them has been TCEB1. This transcription elongation factor subunit can interact with the Alu element in the 3′untranslated region (UTR) of SPRY4-IT1. Besides, SPRY4-IT1 binds with STAU1 to increase STAU1 recruitment to the 3′-UTR of TCEB1 transcript. It subsequently modulates stability and expression of TCEB1, leading to up-regulation of HIF-1α. STAU1 is attributed to the family of double-stranded RNA-binding proteins. It participates in the transport of transcripts to various subcellular localizations. Expression of SPRY4-IT1 is also activated by NF-κB/p65 (5).

SPRY4-IT1 has also been reported to be over-expressed in MCF-7 cancer stem cells compared with MCF-7 cells. Up-regulation of SPRY4-IT1 has enhanced proliferation and stemness of breast cancer cells. Moreover, SPRY4-IT1 silencing has inhibited renewal capacity of breast cancer stem cells and maintenance of their stemness. Mechanistically, SPRY4-IT1 acts as a sponge for miR-6882-3p to affect expression of TCF7L2 (6). SPRY4-IT1 silencing in breast cancer cells has significantly inhibited their proliferation and prompted cell apoptosis. ZNF703 has been found to be a target of SPRY4-IT1 in these cells (7). The encoded protein by this gene is involved in nucleic acid binding and DNA-binding transcription factor binding. Figure 1 shows the oncogenic effect of SPRY4-IT1 in colorectal and breast cancers.

FIGURE 1
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Figure 1 Oncogenic effect of SPRY4-IT1 in colorectal and breast cancers.

Cao et al. has shown that SPRY4-IT1 silencing significantly constrains proliferation of gastric cancer cells through inducing G1 arrest and enhancing apoptosis. SPRY4-IT1 acts as a sponge for miR-101-3p to increase expression of AMPK (8). On the other hand, Xie et al. have shown tumor suppressor role of SPRY4-IT1 in gastric cancer. DNA methylation has been found to be the main mechanism of control of SPRY4-IT1 expression in these cells. Besides, SPRY4-IT1 has been shown to affect EMT in gastric cancer cells (9). In osteosarcoma cells, SPRY4−IT1 has been shown to promote cancer progression through sequestering miR-101 and enhancing expressions of ZEB1 and ZEB2 (10). Figure 2 shows the effect of SPRY4-IT1 in the pathogenesis of gastric cancer and osteosarcoma.

FIGURE 2
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Figure 2 Effect of SPRY4-IT1 in the pathogenesis of gastric cancer and osteosarcoma.

In lung cancer, SPRY4-IT1 has been shown to reverses resistance to cisplatin through decreasing expression of MPZL-1 and suppression of EMT process (11). MPZL-1 is functionally related with tyrosine kinases/adaptors and adhesion. Moreover, EZH2-related epigenetic down-regulation of SPRY4-IT1 has promoted proliferation and metastatic ability of lung cancer cells through influencing EMT (12). Contrary to these studies, Zhang et al. have stated that SPRY4-IT1 increases migration and invasiveness of lung adenocarcinoma cells (13).

In cervical cancer, SPRY4-IT1 can increase EMT influencing activity of the miR-101-3p/ZEB1 axis (14). In testicular germ cell tumors, SPRY4-IT1 has been found to suppress growth of cancer cells and phosphorylation of Akt (15). Figure 3 shows the role of SPRY4-IT1 in the pathogenesis of lung, cervical and testicular cancers.

FIGURE 3
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Figure 3 Effect of SPRY4-IT1 in the pathogenesis of lung, cervical and testicular cancers.

SPRY4-IT1 levels have been found to be elevated in melanoma cells lines when compared to the normal skin cell line. Up-regulation of this lncRNA has been attended by down-regulation of miR-22-3p. Dual luciferase reporter assay has confirmed the interaction between SPRY4-IT1 and miR-22-3p. Under-expression of SPRY4-IT1 has blocked proliferation, invasiveness, migration, and EMT of melanoma cells. Over-expression of miR-22-3p has been shown to decelerate phosphorylation of p38MAPK, MAPKAPK and Hsp27, thus miR-22-3p decreases activity of the p38MAPK/MAPKAPK/Hsp27 signaling (16). In glioma, SPRY4-IT1 has been revealed to stimulate cell proliferation and invasion via up-regulating SKA2 (17). It has a role in enhancement of EMT of glioma cells as well (18). Moreover, SPRY4-IT1 enhances proliferation and invasiveness of pancreatic cancer cells through regulation of Cdc20 (19). Figure 4 shows oncogenic role of SPRY4-IT1 in melanoma, glioma and pancreatic cancer.

FIGURE 4
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Figure 4 Oncogenic role of SPRY4-IT1 in melanoma, glioma and pancreatic cancer.

In bladder cancer cells, SPRY4-IT1 sequesters miR-101-3p to increase proliferation and metastatic ability of neoplastic cells via enhancing expression of EZH2 (20). In hepatocellular carcinoma cells, SPRY4-IT1 silencing has attenuated cell proliferation, colony formation, invasiveness and migratory potential. SPRY4-IT1 silencing has led to cell cycle arrest at G0/G1 stage and stimulated cell apoptosis. Moreover, SPRY4-IT1 silencing has inhibited expression of estrogen-related receptor α (ERRα) at transcript and protein level (21). Upregulation of SPRY4-IT1 has also been shown to increase viability of esophageal squamous cell carcinoma cells through inducing expression of zinc finger 703 (22). Figure 5 shows impact of SPRY4-IT1 in the pathoetiology of bladder, liver and esophageal cancers.

FIGURE 5
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Figure 5 Oncogenic role of SPRY4-IT1 in bladder, liver and esophageal cancers.

Table 1 summarizes the effect of SPRY4-IT1 in cancers based on cell line studies.

TABLE 1
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Table 1 Effect of SPRY4-IT1 in cancers based on cell line studies.

Animal Studies

Experiments in animal models of cancers have verified the influence of SPRY4-IT1 in the carcinogenesis. For instance, up-regulation of SPRY4-IT1 has enhanced proliferation and stemness of breast cancer cells in animal models. Besides, investigations in animal models have shown that SPRY4-IT1 silencing inhibits renewal capacity of breast cancer stem cells and reduces their stemness (6). In xenograft models of gastric cancer, two different studies have reported conflicting results. While in BALB/c nude mice, SPRY4-IT1 silencing has decreased malignant behavior of neoplastic cells (8), another study in male athymic mice has shown the reverse results (9). In animal models of lung cancer, concomitant up-regulation of SPRY4-IT1 and cisplatin treatment has attenuated tumor growth and metastasis (11). However, in other types of cancers, xenograft models have shown oncogenic roles of SPRY4-IT1 (Table 2).

TABLE 2
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Table 2 Role of SPRY4-IT1 in cancers based on animal studies.

Human Studies

Using a panel of colon, breast, and ovarian cancer tissues, Zhao et al. have found that elevation of SPRY4-IT1 expression is associated with aggressive behavior and poor clinical outcome of patients (5). Another study has shown that SPRY4-IT1 overexpression in breast cancer tissues is associated with a larger neoplasm bulk and higher pathological stage (7).

SPRY4-IT1 has also been reported to be increased in gastric cancer tissues and serum exosomes. Notably, up-regulation of SPRY4-IT1 in serum exosomes has been correlated with metastatic ability of this cancer (8). On the other hand, Xie et al. have reported down-regulation of SPRY4-IT1 in gastric cancer tissues in association with greater tumor dimension, higher pathological stage, higher depth of tumor invasion and lymphatic metastasis. Down-regulation of SPRY4-IT1 has been associated with poor prognosis of gastric cancer patients in this cohort (9).

Elevation of SPRY4-IT1 in patients with hepatocellular carcinoma has been associated with poor five year survival of patients. Besides, expression of SPRY4-IT1 in these patients has been correlated with TNM stage (21). Table 3 summarizes the role of SPRY4-IT1 in cancers based on clinical studies.

TABLE 3
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Table 3 Effect of SPRY4-IT1 in cancers based on clinical studies.

Expression of SPRY4-IT1 in tissues and peripheral blood might be used for separation of healthy tissues/blood samples from those obtained from patients with neoplastic conditions (Table 4).

TABLE 4
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Table 4 Impact of SPRY4-IT1 in cancer diagnosis.

Discussion

SPRY4-IT1 has oncogenic roles in diverse tissues. A possible path of participation of SPRY4-IT1 in the carcinogenesis is through decreasing bioavailability of miRNAs such as miR-101-3p, miR‐6882‐3p and miR-22-3p. The sponging effect of SPRY4-IT1 on miR-101 has been verified in colorectal cancer, osteosarcoma, cervical cancer, bladder cancer, gastric cancer and cholangiocarcinoma. Thus, this miRNA is the main target of SPRY4-IT1 in the carcinogenesis process. In spite of the bulk of evidence pointing to the oncogenic roles of SPRY4-IT1 in diverse tissues, single studies in lung, ovarian and gastric cancers have reported a tumor suppressor role for this lncRNA. Notably, in gastric cancer, animal studies have also shown contradictory results. The number of passages of the cancer cell lines and other in vitro and in vivo conditions should be compared between these studies to find the underlying causes of such inconsistent results.

SPRY4-IT1 has functional interactions with HIF-1α, NF-κB/p65, AMPK, ZEB1, MAPK and PI3K/Akt signaling, thus it can influence the carcinogenesis from different aspects.

Diagnostic value of SPRY4-IT1 has been assessed in cervical malignancy, melanoma and esophageal squamous cell carcinoma, with the best values being reported in the melanoma. Since this lncRNA has been identified in serum exosomes of patients with cancer, it represents a possible candidate in non-invasive diagnostic strategies. Yet, these results should be confirmed in large cohorts of patients with different stages of cancers to appraise this potential application.

Except for three types of cancers, namely lung, ovarian and gastric cancers which have contradictory results, elevation of SPRY4-IT1 in other types of cancers has been associated with poor prognosis of patients.

Cumulatively, SPRY4-IT1 is a potential cancer-related lncRNA which can be used as a possible therapeutic target for diverse malignancies. Several issues should be solved before application of SPRY4-IT1-targeting strategies in the clinical setting the most important one being the possible tissue-specific effect of this lncRNA in the carcinogenesis. Moreover, the impact of genetic variants within SPRY4-IT1 coding gene on susceptibility to cancer and response to therapeutic options should be appraised in future investigations.

Author Contributions

SG-F wrote the draft and revised it. MT designed and supervised the study. SS and TK collected the data and designed the figures and tables. All authors contributed to the article and approved the submitted version.

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

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Keywords: SPRY4-IT1, cancer, biomarker, expression, carcinogenesis

Citation: Ghafouri-Fard S, Khoshbakht T, Taheri M and Shojaei S (2022) A Review on the Role of SPRY4-IT1 in the Carcinogenesis. Front. Oncol. 11:779483. doi: 10.3389/fonc.2021.779483

Received: 18 September 2021; Accepted: 23 December 2021;
Published: 13 January 2022.

Edited by:

Jian-ye Zhang, Guangzhou Medical University, China

Reviewed by:

N. Sanjib Banerjee, University of Alabama at Birmingham, United States

Copyright © 2022 Ghafouri-Fard, Khoshbakht, Taheri and Shojaei. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Mohammad Taheri, mohammad_823@yahoo.com; Seyedpouzhia Shojaei, psh1182002@yahoo.com

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.