The Xylulose 5-Phosphate/Phosphate Translocator Supports Triose Phosphate, but Not Phosphoenolpyruvate Transport Across the Inner Envelope Membrane of Plastids in Arabidopsis thaliana Mutant Plants

The xylulose 5-phosphate/phosphate translocator (PTs) (XPT) represents a link between the plastidial and extraplastidial branches of the oxidative pentose phosphate pathway. Its role is to retrieve pentose phosphates from the extraplastidial space and to make them available to the plastids. However, the XPT transports also triose phosphates and to a lesser extent phosphoenolpyruvate (PEP). Thus, it might support both the triose phosphate/PT (TPT) in the export of photoassimilates from illuminated chloroplasts and the PEP/PT (PPT) in the import of PEP into green or non-green plastids. In mutants defective in the day- and night-path of photoassimilate export from the chloroplasts (i.e., knockout of the TPT [tpt-2] in a starch-free background [adg1-1])the XPT provides a bypass for triose phosphate export and thereby guarantees survival of the adg1-1/tpt-2 double mutant. Here we show that the additional knockout of the XPT in adg1-1/tpt-2/xpt-1 triple mutants results in lethality when the plants were grown in soil. Thus the XPT can functionally support the TPT. The PEP transport capacity of the XPT has been revisited here with a protein heterologously expressed in yeast. PEP transport rates in the proteoliposome system were increased with decreasing pH-values below 7.0. Moreover, PEP transport determined in leaf extracts from wild-type plants showed a similar pH-response, suggesting that in both cases PEP2- is the transported charge-species. Hence, PEP import into illuminated chloroplasts might be unidirectional because of the alkaline pH of the stroma. Here the consequence of a block in PEP transport across the envelope was analyzed in triple mutants defective in both PPTs and the XPT. PPT1 is knocked out in the cue1 mutant. For PPT2 two new mutant alleles were isolated and established as homozygous lines. In contrast to the strong phenotype of cue1, both ppt2 alleles showed only slight growth retardation. As plastidial PEP is required e.g., for the shikimate pathway of aromatic amino acid synthesis, a block in PEP import should result in a lethal phenotype. However, the cue1-6/ppt2-1/ppt2-1 triple mutant was viable and even exhibited residual PEP transport capacity. Hence, alternative ways of PEP transport must exist and are discussed.

The xylulose 5-phosphate/phosphate translocator (PTs) (XPT) represents a link between the plastidial and extraplastidial branches of the oxidative pentose phosphate pathway. Its role is to retrieve pentose phosphates from the extraplastidial space and to make them available to the plastids. However, the XPT transports also triose phosphates and to a lesser extent phosphoenolpyruvate (PEP). Thus, it might support both the triose phosphate/PT (TPT) in the export of photoassimilates from illuminated chloroplasts and the PEP/PT (PPT) in the import of PEP into green or non-green plastids. In mutants defective in the day-and night-path of photoassimilate export from the chloroplasts (i.e., knockout of the TPT [tpt-2] in a starch-free background [adg1-1]) the XPT provides a bypass for triose phosphate export and thereby guarantees survival of the adg1-1/tpt-2 double mutant. Here we show that the additional knockout of the XPT in adg1-1/tpt-2/xpt-1 triple mutants results in lethality when the plants were grown in soil. Thus the XPT can functionally support the TPT. The PEP transport capacity of the XPT has been revisited here with a protein heterologously expressed in yeast. PEP transport rates in the proteoliposome system were increased with decreasing pH-values below 7.0. Moreover, PEP transport determined in leaf extracts from wild-type plants showed a similar pH-response, suggesting that in both cases PEP 2− is the transported charge-species. Hence, PEP import into illuminated chloroplasts might be unidirectional because of the alkaline pH of the stroma. Here the consequence of a block in PEP transport across the envelope was analyzed in triple mutants defective in both PPTs and the XPT. PPT1 is knocked out in the cue1 mutant. For PPT2 two new mutant alleles were isolated and established as homozygous lines. In contrast to the strong phenotype of cue1, both ppt2 alleles showed only slight growth retardation. As plastidial PEP is required
The large variations in temporal and spatial expression pattern underpin the functional diversity of the different members of the PT family (e.g., electronic fluorescent protein browser; efp browser 1 , Winter et al., 2007).
The TPT is highly abundant in photosynthetic tissues and mediates the export of TPs from the chloroplast stroma in the light to support sucrose biosynthesis in the cytosol. Thereby it provides the whole plant with carbohydrates during the day ('day path of carbon'). The XPT is ubiquitously expressed in A. thaliana and is proposed to serve as a link between the plastidial and extraplastidial branches of the oxidative pentose phosphate pathway (OPPP; Eicks et al., 2002;Kruger and von Schaewen, 2003;Meyer et al., 2011;Hölscher et al., 2016). Indeed, Hilgers et al. (2018) could recently deliver experimental evidence for this role. The GPTs are mainly expressed in heterotrophic tissues, in particular during gametophyte and embryo development (Niewiadomski et al., 2005), and provide Glc6P as a substrate for starch synthesis and/or the OPPP. Finally, the PPTs are expressed in both green and non-green tissues and are proposed to supply plastids lacking a complete glycolysis with PEP as a substrate for the shikimate pathway, which is entirely localized in the plastid stroma and from which aromatic amino acids and a plethora of primary and secondary plant products derive (Tzin and Galili, 2010).
The individual members of the PT family possess both distinct and overlapping specificities for their transport substrates as is summarized in Table 1. For instance, the TPT, GPTs, and XPT share TP and 3-PGA as a common substrate albeit with different transport capacities and substrate binding affinities. Both GPTs and to a lesser extent the XPT might also be capable of transporting PEP. Hence PTs that share a common substrate might support each other provided that their temporal and spatial expression patterns overlap.
Here we ask the question whether the XPT, because of its ubiquitous spatial and temporal expression pattern, might be 1 http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi able to support the TPT and the PPTs, which are expressed in a distinct way. In order to address this question we took advantage of already existing and also of new A. thaliana mutant lines. Some of these lines have already played a predominant role in the functional characterization of the transporters, like (1) mutants of the TPT, (2) PPT1, or (3) XPT.
(1) A knockout of the TPT (i.e., a loss of the 'day path of carbon') can be almost completely compensated for by an increased turnover of transitory starch. Hence, sucrose biosynthesis starts from the major starch degradation products, maltose and glucose (Zeeman et al., 2010). This 'night path of carbon' can be switched on even during the day as has been shown for antisense TPT plants of tobacco (Häusler et al., 1998) and different alleles of A. thaliana TPT mutants (Schneider et al., 2002;Walters et al., 2004;Schmitz et al., 2012). The survival of the TPT mutants (i.e., tpt-1 and tpt-2) was challenged by crossing them to starch-free mutants (e.g., adg1-1, defective in the catalytic subunit of ADP-Glucose pyrophosphorylase; Lin et al., 1988). The resulting double mutant alleles adg1-1/tpt-1 (Schneider et al., 2002) and adg1-1/tpt-2  were severely retarded in growth, exhibited a high chlorophyll fluorescence phenotype in the dark-adapted state and impaired photosynthesis Schmitz et al., 2012). It has been assumed, but never demonstrated experimentally, that the XPT guarantees survival of these double mutants.
(2) For both PPTs so far only PPT1 mutant alleles are available.
The chlorophyll a/b binding protein underexpressed1 (cue1) mutant of A. thaliana, defective in PPT1, (Li et al., 1995;Streatfield et al., 1999), exhibits a strong developmental phenotype characterized by growth retardation of shoot and roots as well as reticulate leaves. An additional knockout of the plastidial enolase (eno1), which had previously been functionally characterized (Prabhakar et al., 2009), in the background of the cue1 mutant resulted in lethality of the double homozygous mutants (Prabhakar et al., 2010). Obviously import and glycolysis as two major ways to provide plastidial PEP were blocked simultaneously in a critical developmental state of the embryo, and resulted in its abortion. Even heterozygous eno1 mutants in the homozygous cue1 background showed more severe growth retardation compared to cue1, combined with structural changes in both sporopollenin of the male gametophyte and cuticle wax composition on the epidermis of vegetative tissues (Prabhakar et al., 2010). These analyses supported the notion that imported PEP is not only required for the shikimate pathway, but can also be fed into e.g., de novo fatty acid biosynthesis (e.g., Thelen and Ohlrogge, 2002) and the methylerythritol 4-phosphate (MEP) pathway of plastidial isoprenoid biosynthesis (Lichtenthaler, 1999) after conversion to pyruvate by plastidial pyruvate kinase. (3) Surprisingly, loss of function mutants of the XPT lacked any visible or biochemical phenotype, whereas double mutants defective in both the XPT and TPT were retarded in growth and impaired in photosynthesis (Hilgers et al., 2018) and thereby resembled TPT mutants in the starch-free background (e.g., adg1-1/tpt-2).
In the first part of this report we could experimentally verify that the XPT can support the TPT. Plants with a complete block of photoassimilate export from the chloroplasts were not able to survive when grown in soil. In the second part, we could confirm that the XPT is capable of transporting PEP, and for the third part, i.e., the block of PEP import into chloroplasts; we isolated two new PPT2 mutant alleles and generated triple mutants defective in PPT1, PPT2 and the XPT. Surprisingly, the triple mutants lacked any additive phenotype to cue1 and, most strikingly, it exhibited a substantial PEP transport activity. The physiological consequences going along with these observations are discussed.

Plant Material and Growth Conditions
Seeds of A. thaliana ecotypes Ws-2 and Col-0 were obtained from the Nottingham Arabidopsis Stock Centre (NASC). As outlined by Hilgers et al. (2018) the xpt-1 mutant allele (Ws-2 background) was isolated from the T-DNA insertion pool P39F3 obtained from the Arabidopsis Knockout Facility (Madison, Wisconsin, United States). The pool confers BASTA resistance as a selection marker. In addition, the following mutant lines defective in the gene indicated were used for crossings: gpt2-1 (At1g61800; Niewiadomski et al., 2005), adg1-1/tpt-2 . The latter double mutant was obtained from crosses between adg1-1 (At5g48300; Lin et al., 1988) and the tpt-2 allele (At5g46110; Schmitz et al., 2012). Furthermore the PPT1 (At5g33320) knockout mutant cue1-6 (Li et al., 1995) was used in the present study. The isolation of new PPT2 (At3g01550) knockout mutant alleles is described below. Apart from xpt-1 all other mutant lines were in the Col-0 background.
In order to identify mutants in the PPT2 gene we took advantage of the GABI-TILLING (Targeting Induced Local Lesions in Genomes) approach, which had been set up at the University of Potsdam 2 . This approach is based on the creation of mutant populations by EMS and the setup of DNA pools of these mutagenized lines. For the identification of PPT2 mutants, the DNA pools were screened for base pair exchanges by heteroduplex formation in the PPT2 gene. The mutagenized Arabidopsis lines were provided by Thomas Altmann and Georg Strompen. The most promising mutant line was a splice variant at position 879 of the PPT2 gene leading to a frame shift and a series of translational stop codons thereafter. The homozygous mutant line was named ppt2-1. As second PPT2 mutant the T-DNA insertion line Salk_208205 was obtained from the Nottingham stock center (NASC ID: N698426). The homozygous mutant line was named ppt2-2.
If not stated otherwise, plants were germinated and grown in soil (Einheitserde, Type Minitray, Gebr. Patzer KG, Sinntal-Jossa) mixed with 30% Vermiculite for approximately 2-3 weeks in a growth chamber (Johnson Control) equipped with eight dimmable fluorescence tubes (Osram L18W/840) in the longday (16 h light/8 h dark) at a photon flux densities (PFD) at

Crossing and Propagation of Mutant Plants
For crossings immature flowers of homozygous single mutants were emasculated and manually cross-pollinated. For double mutants, the mutant mentioned first was used as female parent. The xpt-1 mutant line was crossed to adg1-1 to obtain adg1-1/xpt-1 double mutants. These were in turn crossed to the adg1-1/tpt-2/gpt2-1 triple mutant  with the aim to generate adg1-1/tpt-2/xpt-1/gpt2-1 quadruple mutants. Homozygous mutants were either verified by PCR on genomic DNA (i.e., for the T-DNA insertion mutants xpt-1 and tpt-2; Supplementary Table S1) or by iodine staining of starch in leaves toward the end of the light period (i.e., for adg1-1, which was obtained by mutagenesis with ethyl methanesulfonate [EMS]; Lin et al., 1988).
Because of the expected serious growth retardations of plants with a combined homozygous loss of ADG1, TPT and XPT functions, the progenies of the above crosses were grown on 1/2 MS agar plates supplemented with modified vitamins (Duchefa M0245) and 50 mM sucrose as carbon source. Propagation of homozygous triple or quadruple mutants (with the additional loss of GPT2 function) in sterile culture was possible only in one case, in particular humidity and condensation had to be controlled carefully during flowering and silique development. Jelly jars with a lid or Magenta boxes with an air filter were not suitable for propagation. Hence the plants were grown on agar (see above) in open jelly jars that were placed in Microboxes (model type: TP4000 + TPD4000, Combiness Europe, Nevele, Belgium) equipped with an air filter (XXL+: green filter) in the lid. The boxes were positioned in a temperature controlled growth cabinet that was run under long-day conditions at day/night temperature of 21 • C/18 • C. The PFD at plant level was approximately 60 µmol·m −2 ·s −1 . The mutant plants were transferred to fresh medium every two weeks.

DNA and RNA Extraction and PCR Methods
Genomic DNA was isolated according to Edwards et al. (1991). RNA was extracted in hot phenol as described in Collart and Oliviero (2001). After treatment with RNase-free DNase (Ambion), oligo-(dT)-primed cDNA of total RNA was synthesized using the Bioscript reverse transcriptase (Bioline). PCR with cDNA or gDNA was performed using Taq polymerase (Thermo Fisher Scientific) according to Mullis et al. (1986) at between 26 and 32 cycles. Amplified DNA was separated on 1.0% agarose gels in the presence of Tris-acetate buffer and 5 µg·ml −1 ethidium bromide.

Determination of the Area Growth of Leaf Rosettes
The area growth of leaf rosettes was determined nondestructively from pictures taken between days 11 and 21 after sowing of plants grown in soil or on 1/2MS agar plates. The areas were calculated using ImageJ 3 by comparing with a known area. The areas were not corrected for overlapping leaves (occurring at later stages of development). Shaded leaves contribute less to photosynthesis as compared to leaves exposed to light. In some cases rosettes were harvested at the same time points and the fresh weights determined.

Pigment and Protein Determinations
Photosynthesis-associated pigments were extracted from freshly harvested leaf material in ice cold 100% methanol overnight at 4 • C in the dark. Chl a, b, and carotenoid contents were determined as described in Wellburn and Lichtenthaler (1984) at wavelengths of 470, 653, and 666 nm.
Proteins were extracted from frozen leaf material in a medium containing 50 mM Hepes-KOH (pH 7.5), and 0.1% (v/v) Triton-X-100 with a Heidolph homogenizer and determined according to Bradford (1976) using BSA as a standard.

Heterologous Expression of the XPT cDNA in Baker's Yeast, and Isolation of the Recombinant Protein
For the analysis of transport characteristics in the proteoliposome system, the XPT cDNA was heterologously expressed in Saccharomyces cerevisiae and the gene product isolated. In contrast to Eicks et al. (2002), the Gateway System (Invitrogen) was used in the present study.
The ENTRY vector required for the Gateway system was generated by TOPO cloning according to the manufacturers' guidelines (Invitrogen). The forward primer for cloning of the full length XPT cDNA (Supplementary Table S1) contained the motif CACC at the 5 end, which is essential for the TOPO reaction. Following the ligation of the gene fragment into the linearized pENTRY/D-TOPO vector by the topoisomerase reaction, chemically competent E. coli (DH5α) cells were transformed and the plasmid DNA was isolated from positivetested clones. Subsequently the construct was transferred via Gateway cloning to the binary yeast expression vector pYES-DEST52 under control of the Gal promoter. For both, the immunological identification of the gene products and the purification of the protein by Nickel NTA chromatography (Bornhorst and Falke, 2000), the pYES-DEST52 vector also allowed the translational fusion of the XPT cDNA with a hexahistidin tag (His-tag).
Competent yeast cells (S. cerevisiae; strain InvSC) were transformed with the pYES-DEST52 vector containing the XPT cDNA according standard transformation protocols (Sigma Aldrich 4 ). Positive yeast clones were selected on YNB-U + Glc plates and tested for the construct by colony PCR (for primers see Supplementary Table S1).
For expression of the recombinant protein, yeast cells tested positive for the construct were incubated under shaking (200 rpm) in 300 ml YNB-U + Glc medium at 28 • C for about 38 h. From these precultured cells, aliquots were spun down for 5 min at 20100·g and the sediments resuspended in and diluted with a total of 2 l induction medium (YNB-U + Gal). Care was taken that the OD 600 was close to 0.4 before initiating the induction of XPT expression. The cultures were further incubated at 28 • C and 5 ml samples were taken and frozen in liquid N 2 in a time-course (i.e., 0, 2, 4, 6, and 8 h after induction as well as overnight) to monitor the expression strength of the recombinant protein on immunoblots after SDS-PAGE.
In order to yield recombinant proteins at their maximum expression levels from the induced yeast cells, a 1 l culture was distributed equally between three Sorvall GS3 tubes and centrifuged at 11950·g for 13 min. Centrifugations and all further steps were done at 4 • C. The supernatants were discarded, the sediments resuspended in about 1-2 ml induction medium, collected in 50 ml Falcon tubes and spun down at 20100·g for 5 min. The sediments were either directly used for further experiments or frozen at −20 • C until use.
For the isolation of yeast membranes the sedimented yeast cells were resuspended in 5 ml ice-cold extraction buffer containing 20 mM Tris-HCl (pH 8.0), 500 mM NaCl, 1 mM DTT, 0.5 mg·ml −1 PMSF, a few mg of both DNAse and RNAse. Of the suspension 500 µl aliquots were added to 400 mg of acidwashed glass beads in 1.5 ml Eppendorf tubes. The yeast cells were extracted with the glass beads in a MSK cell homogenizer (Braun, Melsungen) for 10 min at 4 • C. To the extracts another 500 µl of extraction buffer was added, shaken and centrifuged at 9280·g for 5 min. The supernatants were unified in a 15 ml Falcon tube and divided equally into 10 Eppendorf tubes (2 ml). The extracts were centrifuged at 35000 g for 30 min in an Optima L-80 XP Ultracentrifuge. The supernatants were discarded and the sediments containing the yeast membranes stored at −80 • C until further use.

Transport Measurements of Phosphate Translocators in the Reconstituted Proteoliposome System
Transport rates of the heterologously expressed recombinant XPT protein were determined essentially as described by Flügge (1992) and Fischer et al. (1994) in the proteoliposome system.
Aliquots of the frozen yeast membranes containing the recombinant XPT protein were emulsified in 300 µl extraction medium containing 200 mM Tricine-KOH (pH 8.0), 10 mM EDTA, 4 mM DTT, 6 mM ascorbate, and 0.1% w/v defatted BSA. In order to obtain homogenous yeast membrane preparation, the emulsion was sonicated with 5 pulses at 30% duty cycle, output control 5 (Branson Sonifier 250; Branson, MO, United States). For each transport measurement 50 µl of yeast membranes was used.
Liposomes were prepared from purified phospholipids (20% final concentration: Type IV-S, Sigma-Aldrich), which were emulsified in liposome medium containing (final concentrations, each), 100 mM Tricine-KOH (pH 7.8), 50 mM K-gluconate, supplemented with 30 mM of the transport substrates P i , or PEP, or as a control with Na-gluconate. Each assay mixture (i.e., for 5 to 10 assays) was sonicated for 10 min at 30% duty cycle, output control 5. Of the extraction medium, containing 50 µl of yeast membranes, 0.6 ml were mixed with 0.5 ml of the desired liposome/substrate preparation, frozen in liquid nitrogen and stored at −80 • C until further use. Likewise, for the determination of PT transport activities in wild-type and mutant plants, rosette leaves were pulverized in liquid nitrogen and homogenized in extraction medium supplemented with 0.1% (w/v) of Polyclar AT (insoluble PVP) at an extract/fw ratio of 10:1 essentially as described in Flügge and Weber (1994). Of the extracts 0.6 ml were mixed with 0.5 ml liposome/substrate preparations (see above), frozen in liquid nitrogen and stored at −80 • C until further use.
For the assessment of dependencies of PT transport activities from pH-values inside the liposomes, titration curves with K-gluconate, KH 2 PO 4 , and K-PEP were constructed to determine the exact quantity of KOH required to adjust the desired pH-values. Likewise both extraction medium (in the absence of BSA) and liposome buffer were also prepared at the desired pH-values. In this case TRICINE was replaced by a combination of the three buffer substances MES, HEPES, and TRICINE at a molar ratio of 1/3 each. Similarly, for dependencies of TP transport activities from the PEP concentration inside the liposomes, final PEP concentrations in the assays, between 1 and 30 mM, were balanced with K-gluconate to maintain the total concentrations of both compounds of 30 mM.
The frozen extract/liposome mixtures were thawed slowly on ice to initiate the formation of proteoliposomes, which was completed by a second round of sonication with 30 pulses at 30% duty cycle, output control 5. In order to remove the counter-exchange substrate from the external solution, the proteoliposome preparations were subjected to gel filtration on PD-10 columns (Sigma Aldrich) equilibrated with PD-10medium containing, 100 mM Na-gluconate, 50 mM K-gluconate, and 10 mM Tricine-KOH (pH 7.6). For studying the effect of the external pH of the proteoliposomes on PEP or P i counterexchange rates, the PD-10-medium was adjusted to the desired pH-value. In case of steep pH-gradients between the internal and external space of the liposome, care was taken that the PD-10 step and the subsequent transport experiments were done within a time frame of less than 3 min.
Transports were initiated by mixing 850 µl proteoliposomes with 50 µl 32 P-labeled P i solution at pH 7.5 (final P i concentration 0.14 mM) with a specific activity of between 40,000 and 60,000 cpm·nmol −1 P i . For a time-course of P i counter-exchange, transport reactions were terminated after 15, 30, 45, and 60 s by passing 200 µl aliquots of the reaction mixtures through Dowex anion exchange columns (AG1.8, mesh size 100-200; Bio-Rad, Munich, Germany) equilibrated with 0.2 M Naacetate. For dependencies of transport rates from substrate or inhibitor concentrations, either substrate or inhibitor was contained in the 50 µl labeling solution, to give the desired final concentration after initiating the transport by the addition of the proteoliposomes. Radioactivity taken up by the proteoliposomes was quantified using liquid scintillation counting (Beckman LS7500). Transport rates were linear for at least 1 min. Substratespecific counter-exchange rates were corrected against transport rates observed for proteoliposomes preloaded with Na-gluconate.

Detection of the His-Tagged XPT Protein After SDS-PAGE on Immunoblots
The recombinant protein extracted from yeast cells was separated by discontinuous sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) according to Laemmli (1970) on 15% separation gels. For immunological detection, proteins were transferred from the SDS-gels to polyvinylidene fluoride (PVDF)membranes (BioRad, Munich) by electro-blotting according to Jungblut and Seifert (1990) using a 'semi-dry' blotting apparatus (Carboglass; Schleicher and Schüll). The membranes were incubated for 2 h in casein containing blocking solution and probed for the detection of the His-tag overnight at 4 • C with, mouse anti-penta-His as primary antibody. Following incubation with the secondary antibody, i.e., goat anti mouse conjugated with horse radish peroxidase (Sigma, St. Louis, Missouri), the proteins were detected by chemo-luminescence following the application of SuperSignal West substrate (Thermo Fisher Scientific) in an ImageQuant LAS-4000 Luminescent Analyzer (GE Healthcare).

Photosynthesis Measurements
Photosynthesis parameters at PSII were determined fluorometrically according to Schreiber et al. (1986) and Genty et al. (1989) with an Imaging PAM (M-series, Maxi version, Walz, Effeltrich, Germany) Induction kinetics of photosynthesis and light saturation curves have been assessed according to the routines implemented in the Imaging PAM software. The plants were dark-adapted for 30 min prior to induction with actinic light for 5 min. Care was taken that the light saturation curves of photosynthesis were measured immediately after induction. The duration at each PFD was 20 s starting with the lowest PFD. The parameters NPQ (quantum efficiency of directed non-photochemical quenching [mainly 'heat emission'] at PSII) and NO (quantum efficiency of non-directed 'other' non-photochemical events) were derived from theoretical considerations discussed in Kramer et al. (2004), simplified by Hendrickson et al. (2004). From the quantum efficiency of PSII electron transport ( PSII) non-cyclic electron transport rates (ETR) can be estimated according to Genty et al. (1989). Since neither leaf absorptance nor antenna cross sections of the photosystems and excitation energy distribution between them were determined, ETR is expressed in relative terms.

Statistical Evaluation of Experimental Data
The data are expressed as mean values ± standard error (SE) of the mean of the indicated number of independent measurements. Significant differences between more than two physiological data sets were analyzed using one-way ANOVA combined with the post hoc Tukey-Kramer test, which allows the comparison of unequal sample sizes and identifies values which are significantly different (Ludbrook, 1998). For data plotting and fitting, SigmaPlot10.0 for Windows (Systat Software Inc.) was used. Kinetic constants, K m or K i , were estimated from non-linear curve fits assuming that a hyperbolic response is applicable. The constants were expressed as mean ± SE and derived from between 8 and 10 data points per curve of two independent experiments.

The XPT Can Partially Substitute the TPT in Mutants With a Block in Photoassimilate Export From the Chloroplasts
A block in the day-and night-path of carbon export from the chloroplasts would be expected to result in a lethal phenotype. However, the loss of both functions, i.e., TP export by the TPT and starch biosynthesis (and with it starch degradation), resulted only in a severe growth retardation and impaired photosynthesis in the adg1-1/tpt-2 double mutant (Schmitz et al., 2012 and Supplementary Figure S1C), suggesting that additional ways must exist that allow a basic level of carbon export from the chloroplast. The most promising candidate for mediating an alternative carbon export is the XPT. The respective single mutant lacked any visible phenotype different from its wild-type accession (i.e., Ws-2; Supplementary Figure S1A). However, double mutants of the TPT and XPT (tpt-2/xpt-1) were growthretarded and impaired in photosynthesis (Supplementary Figure S1B). Thus they resembled the adg1-1/tpt-2 double mutant (Supplementary Figure S1C). A detailed study on possible reasons for these unexpected strong growth and photosynthesis phenotypes of the tpt-2/xpt-1 double mutants is contained in Hilgers et al. (2018). Moreover, GPT2 expression can be induced in leaves in the presence of high sugar levels (i.e., when plants were grown on Suc; Schmitz et al., 2012; and references therein) and hence GPT2 might also become involved in carbon export from the chloroplasts. The gpt2-1 single mutant lacks any pronounced growth phenotype when compared to the wild-type (Supplementary Figure S1B). Most importantly, For adg1-1/tpt-2 the additional knockout of GPT2 in the adg1-1/tpt-2/gpt2-1 triple mutant had also no effect on the partial rescue of the growth and photosynthesis phenotypes, when the plants were grown on sucrose , indicating that GPT2 is not involved in compensational carbon export from the chloroplasts. When grown in soil the triple mutant was indistinguishable from the double mutant FIGURE 1 | Chl a fluorescence phenotype of seedlings from a segregating mutant population defective in ADG1, TPT, XPT and GPT2. The plants were germinated and grown on 1/2MS agar plates supplemented with 50 mM sucrose under long-day conditions and a PFD of 150 µmol·m −2 ·s −1 for 8 days. (A) Seedlings were dark-adapted for 30 min and the F v /F m -ratio determined by PAM fluorometry. (B) Correlation between the F v /F m -ratios with the genotype of the mutants (determined on day 28). The F v /F m -ratio dropped from around 0.5 in adg1-1/tpt-2 double or adg1-1/tpt-2/gpt2-1 triple mutants, to around 0.35 when the xpt-1 mutation was in the heterozygous state and reached 0.06 in homozygous adg1-1/tpt-2/xpt-1 triple mutants, irrespectively whether GPT2 was knocked out homo-or heterozygously. Figure S1C). For the experiments in this report the knockout of the GPT2 gene was included again.
Seeds of the segregating line with the genotype ADG1(−/−)/TPT(−/−)/XPT(+/−)/GPT2(+/−) were germinated on 1/2 strength MS agar plates supplemented with 50 mM Suc as carbon source. Interestingly, the seedlings could already be distinguished on the basis of their F v /F m -ratios (Figure 1) nine days after sowing. The genotyping, which has been done 28 days after sowing, supported the three different classes of F v /F m -responses that correlated with the genotypes. The highest F v /F m -ratio (0.531 ± 0.011; n = 5) was observed for plants that were homozygous for the knockout in ADG1 and TPT, but wild type for XPT. The F v /F m -ratio was further significantly diminished to 0.357 ± 0.013 (n = 5; P < 0.01), when XPT was knocked out heterozygously in the adg1-1/tpt-2 background. Homozygous adg1-1/tpt-2/xpt-1 triple mutants exhibited the lowest F v /F m -ratio (0.062 ± 0.012; n = 5; P < 0.01), suggesting that the capacity of photosystem II is strongly impaired. The additional homo-or heterozygous knockout of GPT2 had neither an effect on F v /F m -ratios nor on the growth characteristics of the plants. The homozygous knockout of ADG1, TPT, and XPT resulted in plants that were extremely small even after 28 days of growth on 1/2MS agar plates supplemented with Suc (Supplementary Figure S2).
After 29 days of growth on agar plates, eight plants homozygous for the mutation in ADG1, TPT, and XPT were transferred to soil together with control plants carrying either a wild-type XPT or a heterozygous mutation in the XPT (Figure 2). All homozygous adg1-1/tpt-2/xpt-1 triple mutants died within 15 days after transfer to soil. The right panel of Figure 2 shows four examples of this genotype. In a control experiment, 22 triple mutants were again transferred to 1/2MS agar supplemented with 50 mM Suc, either in jelly jars, Magenta boxes with an air filter, or in open jelly jars placed in Microboxes. All these plants survived for at least another 28 days. Of these plants, 17 developed inflorescences 86 days after germination, but only 7 plants exhibited flowers ( Figure 3B). Only one plant, grown in an open jelly jar within the Microbox developed siliques with some seeds at day 115 after germination (Figures 3C,D). Genotypes with a wild-type like XPT or heterozygously mutated XPT developed seeds after transfer to soil within 60 days after germination ( Figure 3A).
These data clearly demonstrate that a combined absence of the TPT and XPT is lethal in a starch-free background, irrespectively of the presence or absence of GPT2, and thus supports the idea that (1) the XPT is capable of partially substituting the TPT as has been proposed previously (e.g., Häusler et al., 2009;Schmitz et al., 2012) and (2) that plants with a complete block in the day and night path of carbon cannot survive.
Can the XPT Functionally Support the PPTs?
Besides of its main transport substrate, Xu5P, as well as TPs, the XPT can also transport PEP, albeit with a lower V max and a relatively high K m as compared to TPs (Table 1). Moreover, in contrast to the TPT, which is a single copy gene in A. thaliana, two PPT genes are present in the A. thaliana genome, PPT1 and PPT2. PPT1 is knocked out in several cue1 mutant alleles (Li et al., 1995). However, so far there are no reports on knockout mutants in the PPT2 gene available. Here we intend to block PEP transport across the chloroplast envelope simultaneously, i.e., by defects in PPT1, PPT2 and XPT functions. According to Table 1 both GPTs of A. thaliana have also the capacity to transport PEP (with unknown K m -values). Unlike both GPT genes, the XPT is ubiquitously expressed and would hence be able to functionally support PPT functions in most, if not all tissues (efp browser; Winter et al., 2007). A complete restriction of PEP supply to the stroma should result in an inhibition of the shikimate pathway as it is, for instance, achieved by the application of the herbicide glyphosate, an inhibitor of 5-enolpyruvylshikimat-3-phosphat synthase EPSPS (Steinrücken and Amrhein, 1980).
On the way to block PEP transport across the envelope, we (1) analyzed kinetic properties of the recombinant XPT protein from A. thaliana expressed in yeast cells with respect to PEP. (2) Two allelic mutants of PPT2 (ppt2-1 and ppt2-2) were isolated and established as homozygous lines and (3) triple mutants defective in both PPTs and the XPT functions (cue1-6/ppt2-1/xpt-1) were generated by genetic crosses and initially characterized.

PEP Transport Catalyzed by Recombinant XPT and in Leaf Extracts Is
Higher at pH 7.0 and Below The capacity of PEP transport mediated by the XPT is a critical prerequisite for any further evaluation of its role in supporting both PPTs. In transport studies using the proteoliposome system, the pH of the preloaded counter-exchange substrate is usually adjusted to pH 7.8, which is between the expected neutral pH in the cytosol of the mesophyll and the alkaline pH in the stroma of illuminated chloroplasts (Fischer et al., 1997;Kammerer et al., 1998;Eicks et al., 2002). In earlier studies it could be demonstrated that the TPT is specific for substrates with two rather than three negative charges (Fliege et al., 1978). This charge specificity explains why 3-PGA is a poor export substrate from chloroplasts, because at a pH of about 8.0 in the stroma it exists to 89% in the 3-fold negatively charged form (because of the two negative charges of the phosphate group), whereas TPs are predominantly 2-fold negatively charged (because they do not carry any additional organic acid function). PEP differs significantly from TP and 3-PGA in the pK avalue for the second proton (i.e., pK a = 7.1 for 3-PGA and pK a = 6.4 for PEP 5 ). Even at pH 7.0, PEP exists to 80% in the 3-fold negatively charged form compared to 3-PGA with only 44%.
According to Eicks et al. (2002) the maximum transport activity of the XPT for PEP was about 10% of the P i transport with a relatively poor K m for PEP compared to the PPT from cauliflower buds (see Table 1). In order to test whether the XPT is a suitable candidate for PEP transport, the recombinant XPT protein was expressed in yeast (Supplementary Figure S3A) and the isolated yeast membranes carrying the XPT protein were reconstituted into proteoliposomes. The homologous 32 P i / 31 P i counter-exchange rate was linearly correlated with the amount of yeast membranes (Supplementary Figure S3B). As it was intended to analyze the transport characteristics of the XPT in a pH-dependent manner, the internal space of the proteoliposomes was adjusted to three different pH-values. Figure 4A shows that PEP, compared to P i , is only poorly transported at pH-values between 7 and 7.7. In contrast, at pH 6.0, PEP transport increased dramatically, and the absolute rates of PEP-and P i -transport were very similar. In contrast to PEP, P i -transport showed only a weak response toward changes in the internal pH-values. Hence, depending upon the pH of the surrounding medium, PEP can be transported more efficiently by the XPT than expected from previous studies.
A further focus of our study was the determination of kinetic constants of the XPT at two different pH-values of the external medium of the proteoliposomes. Substrate saturation kinetics of the recombinant XPT with P i (Figures 4B,C) and inhibition kinetics of the homologous 32 P i / 31 P i exchange by increasing PEP concentrations (Figures 4D,E) were constructed at pH 7.0 and 8.0. Interestingly, the K m -values for P i lacked any pronounced dependency on the pH (i.e., 0.40 ± 0.07 mM at pH 7.0; or 0.57 ± 0.05 mM at pH 8.0) albeit the V max decreased from 114 pmol·min −1 at pH 7.0 to 67 pmol·min −1 at pH 8.0. Initial inhibition studies of homologous 32 P i / 31 P i transport by applying increasing PEP concentrations to the external medium revealed an interesting aspect. Whilst at pH 7.0 the transport data fitted well to a decaying hyperbola approximating zero at infinite PEP concentration (Figure 4D), at pH 8.0 this was not the case ( Figure 4E). The latter data set fitted much better to a decaying hyperbola with an offset >0 (Figure 4E; red line) rather than zero (Figure 4E; blue line). Interestingly, with both fits identical curves were obtained for pH 7.0 ( Figure 4D), but not at pH 8.0. At pH 7.0, PEP binds with an apparent K i(app)value of 3.76 ± 0.39 mM, whereas at pH 8.0 two K i(app) -values could be obtained depending on the curve fit. The decaying hyperbola without offset provided a K i(app) of 3.71 ± 0.7 mM PEP and the decaying hyperbola with offset >0 delivered a K i(app) of 0.68 ± 0.07 mM PEP, suggesting different modes of substrate/inhibitor binding. However, more detailed studies are required to unravel possible differences in substrate binding mechanisms with changing pH-values (Segel, 1993).
Based on these findings both the concentration dependency and the pH-response of PEP transport were further analyzed with extracts of wild-type leaves. Proteoliposomes containing FIGURE 4 | Kinetic properties of the heterologously expressed XPT protein or of leaf extracts in the proteoliposome system. In (A) the internal space of the proteoliposomes was preloaded either with PEP (red circles), P i (blue circles) or gluconate (light grey circles) (30 mM each) adjusted to pH values of 7.8, 7.0 and 6.0. The transport kinetic was initiated by adding 0.14 mM 32 P labeled P i as a counter-exchange substrate at pH 7.5. In (B,C) substrate saturation kinetics with radiolabeled P i at either pH 7.0 or pH 8.0 outside of the proteoliposomes (inside pH 7.8) are shown. The red or green open triangles represent individual measurement, whereas the closed circles indicate the mean values. In (D,E) inhibition kinetics of P i import (0.14 mM) by increasing concentrations of PEP are shown. Curves were fitted to the experimental data (mean of two experiments) under the assumption that the hyperbolic decay curve approaches a transport rate of zero at infinite PEP concentrations (blue line) or the decay curve intercepts the transport axis in the positive range (red line). Both curve fits resulted in an identical (D) or a substantial different curvature (E). In (F) proteoliposomes containing membrane proteins from Col-0 leaf extracts were preloaded with increasing PEP concentrations balanced with gluconate to maintain a constant osmolarity. P i counter-exchange was initiated by the addition of 32 P-labeled P i (0.14 mM). From the hyperbolic curve fit a K m -value for PEP of 4.34 ± 2.6 mM was determined. In (G) a dependency of P i /PEP counter-exchange from the internal pH inside the proteoliposomes at a total PEP concentration of 3 mM is shown. The blue symbols and line indicate the experimental data, whereas the red circles and line were predicted for counter-exchange rates, assuming that two-fold negatively charged PEP 2− represents the transported PEP species. reconstituted membrane proteins from Col-0 leaves were preloaded with PEP concentrations of between 1 and 30 mM (balanced with gluconate) at an internal pH of 8.0 and the counter-exchange rate with radio-labeled P i was measured ( Figure 4F). The saturation kinetics exhibited a hyperbolic response between transport rates and substrate concentrations with an apparent K m -value for PEP export of 4.34 ± 2.14 mM. If it is considered that PEP 2− might be the transported substrate species, the K m -value for PEP 2− would be 0.106 ± 0.053 mM at pH 8.0. Moreover, as is shown in Figure 4G, there was a substantial increase of PEP/P i counter-exchange with decreasing pH-values, suggesting that the pH-dependency seems to be a general feature of PEP transport catalyzed by the PPTs and the XPT. Using the K m -value for PEP 2− deriving from the substrate saturation curve in Figure 4F and the PEP 2− concentrations in equilibrium at the three different pH-values depicted in Figure 4G, it is possible to construct the dependency of PEP/P i counter-exchange rates from the PEP 2− concentration, represented by the red open symbols and the red dashed line ( Figure 4G). It is hence conceivable that the pH-dependency of PEP/P i counter-exchange is governed by the availability of PEP 2− as transport substrate.
FIGURE 5 | Molecular characterization of mutants deficient in PPT2. (A) PPT2 gene structure with individual mutation either deriving from the TILLING approach (i.e., EMS mutagenized lines), ppt2-1, or from a T-DNA insertion, ppt2-2, as well as the binding sites of primer pairs for the identification of the mutations. For screening of ppt2-1 (B), which is characterized by a mutated splice motive in front of exon 3, advantage was taken that the base pair exchange in the mutant also destroyed a binding site for the restriction enzyme BsrI. Genomic DNA, amplified by the gene specific primers ppt2-1 (f1) and ppt2-1 (r1) delivered either two bands, in the heterozygous state, or a larger and smaller band for the mutant and wild type, respectively, after digestion with BsrI. (C) PPT2 transcripts (cDNA) in the ppt2-1 mutant (= ppt2-Tilling-115) revealed two bands as compared to only one band in Col-0 PPT2 cDNA or gDNA. This double band is based in an alternative splice site upstream of the mutated splice site when the primer pairs ppt2-1 (f2) and ppt2-1 (r2) were used for amplification and the products were digested with BsrI (the numbers 1 to 4 denote increasing DNA amounts). (D) The genomic DNA region of the PPT2 gene, which was amplified by PCR using the primer pairs ppt2-1 (f2) and ppt2-1 (r2), reveals the two splice sites in front (green) and at the end (red) of the second intron. The latter is mutated in the ppt2-1 mutant and gives rise to the use of an alternative splice site (blue) instead of the mutated site, leading to the partial excision of the gray-shaded DNA region and the occurrence of the characteristic double bands of the ppt2-1 mutant. In (E) the identification of the homozygous ppt2-2 T-DNA insertion mutant with genomic DNA isolated from Col-0 wild-type and ppt2-2 is shown. The primer pairs used are indicated in the Figure. (F) The homozygous ppt2-2 mutant lacks any transcripts (cDNA) of PPT2 as compared to Actin2. For the amplification the ppt2-2 (f) and (r) primers were used. (G) Rosette phenotypes of wild-type and ppt2 mutant plants grown for three weeks on 1/2MS agar plates at a PFD of 150 µmol −2 ·s −1 in the long-day. The plants were grown for three weeks in soil at a PFD of 150 µmol·m −2 ·s −1 in the long-day. The PFD during the induction of photosynthesis and the determination of φPSII was 164 µmol·m −2 ·s −1 . The relative ETR (800) determined at the highest PFD applied (i.e., 800 µmol·m −2 ·s −1 ) was obtained from light curves (Supplementary Figure S6). The data represent the mean ± SE of n = 15 replicates.

Mutants Deficient in PPT2 Are Slightly Retarded in Growth Compared to Wild-Type Plants
Until now there are no reports on A. thaliana mutants deficient in PPT2. Two approaches were deployed to identify different alleles of PPT2 knockout mutants, (1) the GABI-TILLING program and (2) the search for T-DNA insertion mutants.
For the TILLLING approach, among 14 candidate lines with mutations in the desired region there was only one promising candidate for a knockout in the PPT2 gene. The line 115 carried a base pair exchange at position 879, (A against G; i.e., at position 599 upstream of the translational start codon), directly in front of the third exon ( Figure 5A). By this mutation a splice site was eliminated resulting in an incorrect splicing of the second and third exon, i.e., the second intron remained still part of the mRNA (or cDNA). Apart from the mutation in the splice site, the base exchange at position 879 also destroyed a recognition site of the restriction enzyme BsrI, which offered a way to identify homozygous mutants by a restriction digest ( Figure 5B). Moreover, by sequencing the different PCR products shown in Figure 5C, it became evident that, due to incorrect splicing at the mutated splice site, a secondary splice site with the same sequence 22 bp downstream of position 897 was used in the mutant ( Figure 5D). However in both cases, i.e., the mutated and the alternative splice sites, the predicted amino acid sequences of the resulting proteins would contain translational stop codons after 166 or 142 amino acids, respectively (Supplementary Figure S4). A translational stop in this region would result in an impaired protein between the second and third transmembrane domain. The ppt2-1 mutant was backcrossed to the wild type three times to shed additional point mutants resulting from the EMS treatment.
For the second approach, a mutant was isolated carrying the T-DNA insertion at position 1061 bp downstream of the start codon, right at the beginning of the 5 th exon (Figures 5A,E). The ppt2-2 mutant lacked any transcript, when gene specific primers were used to amplify the region before and behind the insertion site ( Figure 5F).
The rosettes of both mutant alleles appeared slightly smaller compared to the wild type ( Figure 5G). Growth rates based both on rosette areas and leaf fresh weights revealed small, but significant growth retardations for both mutant alleles compared to wild-type plants at day 21 after sowing (Supplementary Figure S5) and hence support Figure 5G. A statistical analysis is contained in Supplementary Table S2A. The Chl a fluorescence characteristics exhibited only minor differences between both ppt2 alleles and the wild type ( Table 2). Induction and light curves of relative ETR as well as efficiencies of PSII ( PSII) and non-photochemical components ( NPQ and NO) were also very similar between the mutant and the wild-type plants (Supplementary Figure S6). However, some small differences were significant due to low errors and high sample sizes (Supplementary Table S2B).
The Additional Knockout of PPT2 and the XPT Had No Effect on the Vegetative Phenotype of the cue1-6 Mutant A deficiency in PPT1 results in a strong growth retardation and a reticulate leaf phenotype of the cue1 mutant, which is still not completely understood. Here we asked the question as to which extent additional PEP transport activity mediated by PPT2 and/or the XPT guarantees survival of the cue1 mutant. Figure 6 shows the characterization of crosses between cue1-6, ppt2-1, and xpt-1 compared to the wild type. Based on genomic DNA the mutation in XPT (Figure 6A) or PPT2 (Figure 6B) could be verified. Surprisingly, the combined knockouts of PPT2 and the XPT in the cue1-6 background (i.e., cue1-6/ppt2-1, cue1-6/xpt-1, and cue1-6/ppt2-1/xpt-1) had no obvious additional effect on the cue1-6 phenotype ( Figure 6C). The first visual impression was quantified as time-dependent increase in the leaf area between days 11 and 22 after sowing of around 16 plants per line. As is shown in Figure 6D there were no significant differences in growth between cue1-6 and the respective cue1-6/ppt2-1 and cue1-6/xpt-1 double mutants or the cue1-6/ppt2-1/xpt-1 triple mutant. In general, growth rates of mutant plants in the cue1-6 background were much smaller as compared to the respective wild-type or single mutant plants with the exception of ppt2-1, which also showed a significantly smaller increment in growth. The above data indicate that a single knockout of the PPT2 gene seems to be able to slightly diminish growth, but this effect is not additive with the growth retardation in cue1-6. Hence neither PPT2 nor XPT are likely to significantly support survival of cue1-6.

Generative Development Reflects Constraints in Vegetative Growth of PPT2 and XPT Mutants in the cue1-6 Background
The generative development of wild-type and mutant plants impaired in both PPTs and/or the XPT is summarized in Table 3. A general characteristic of cue1-6 and further mutants in this background was a diminished shoot height (compare Supplementary Figure S7). The number of siliques, as one of the major characteristics of generative development, was diminished by at least 50% in all lines with a cue1-6 background. However, a detailed analysis of more subtle differences in generative growth parameters between mutants in the cue1-6 background was hampered by the fact that both wild-type accessions already showed large variations. A statistical analysis of the data is contained in Supplementary Table S3A.  In (A,B) the identities of the mutation in XPT and PPT2 were confirmed with genomic DNA. The numbers in (A) denote PCR with XPT-1 (f) and (r) primers to identify wild-type XPT (1) or PCR with LP XPT−1 (f) and XPT-1 (r) primers to identify to insertion in xpt-1 (2) (see Supplementary Table S1). In (C) the phenotypes of plants grown in soil for 20 days after germination in a temperature controlled growth chamber at a PFD of 150 µmol −2 ·s −1 are shown. The bar represents 1 cm. (D) Growth rates of leaf rosettes are shown for Ws-2 (black circles), xpt-1 (dark red circles), Col-0 (black squares), ppt2-1 (dark cyan squares), cue1-6 (dark green diamonds), cue1-6/ppt2-1 (dark blue triangles), cue1-6/xpt-1 (dark red triangles) and cue1-6/ppt2-1/xpt-1 (dark purple triangles). The plants were grown on 1/2MS agar plates at a PFD of 150 µmol −2 ·s −1 in the long-day. The data represent the mean ± SE of n = 15 to 16 replicates. A statistical analysis of growth parameters is contained in Supplementary Table S3A. Photosynthesis Was Slightly More Hampered in cue1-6/ppt2-1/xpt-1 Triple Mutants Compared to cue1-6 Photosynthesis parameters in the individual lines were determined by PAM fluorometry (Table 4A). Apart from expected differences in photosynthesis between cue1-6 and wildtype plants as well as the xpt-1 and ppt2-1 single mutants, there were also some small, but significant drops in the F v /F m -ratio and PSII (164) between the cue1-6/ppt2-1/xpt-1 triple mutant and the cue1-6 single mutants. Hence a combined knockout of both PPTs and the XPT had a subtle impact on photosynthesis in the cue1-6 background.
Moreover, the induction kinetics and light curves of photosynthesis parameters, including the efficiencies of directed and undirected non-photochemical processes, i.e., NPQ and NO, are shown in Supplementary Figure S8. Surprisingly, the diminished PSII in the cue1-6 background, in particular at PFDs above 400 µmol·m −2 ·s −1 , was accompanied by an increase in NO rather than NPQ, suggesting that directed heat emission from the antennae of PSII seems not to be altered as a consequence of a lack in both PPTs and the XPT. The increase in NO was more marked  Figure S7). The data represent the mean ± SE of n = 8 to 9 replicates. Significant differences with respect to the individual wild-type plants are indicated by stars. A statistical analysis of the data is contained in Supplementary  Table S3A. in the cue1-6/ppt2-1/xpt-1 triple mutant (Supplementary  Table S2B).
Furthermore, we addressed the question whether changes in ETR are also reflected in different contents and compositions of pigments related to photosynthesis. As might be expected from the reticulate leaf phenotype, total Chl contents dropped by around 38% from an average of 197 mg·m −2 in the wild type and single mutants to about 122 mg·m −2 in the cue1-6 background, leaving the Chl a/b-ratio unchanged (Table 4B). This drop in Chl reflects quite well the diminished relative ETR of 30%. However, neither carotenoid contents nor Chl a/b-ratios or leaf protein levels showed any significant differences between the individual lines. The specific leaf fresh weight determined as mass-to-area-ratio followed basically the decline in Chl contents. Both diminished Chl and specific fresh weights are governed by larger intercellular air spaces in the mesophyll of cue1-6 (Kinsman and Pyke, 1998).

Transport Measurements Revealed
Residual PEP/P i Counter-Exchange Capacities in cue1-6/ppt2-1/xpt-1 Triple Mutants The determination of PEP/P i counter-exchange rates with reconstituted membrane proteins isolated from leaf extracts of The plants were grown for three weeks in soil at a PFD of 150 µmol·m −2 ·s −1 in the long-day. In (A) the PFD during the induction of photosynthesis and the determination of φPSII was 164 µmol·m −2 ·s −1 . The relative ETR (800) determined at the highest PFD applied (i.e., 800 µmol·m −2 ·s −1 ) was obtained from light curves (Supplementary Figure S8). The data represent the mean ± SE of n = 9 replicates (A), n = 4 to 10 replicates (B). Significant differences with respect to the individual wild-type plants are indicated by stars. A statistical analysis of the data is contained in Supplementary Tables S3B,C.
FIGURE 7 | Transport rates for P i and PEP determined with reconstituted membrane proteins from wild-type and mutant plants in the proteoliposome system. In (A,B) rates of P i and PEP counter-exchange with 0.14 mM radiolabeled 32 P i (pH 7.5) are shown for Col-0 wild-type (white bars), the ppt2-1 (red bars) and cue1-6 (blue bars) single mutants as well as the cue1-6/ppt2-1 double mutant (dark purple bars), and the cue1-6/ppt2-1/xpt-1 triple mutant (black bars). The rates of the negative control, gluconate (indicating P i uniport), were subtracted from the specific counter-exchange rates with P i or PEP. The data represent the mean ± SE of n = 4 replicates. Significant differences with respect to the wild-type or the ppt2-1 single mutant are indicated by green or blue stars, respectively. P < 0.05 or P < 0.01 is indicated by single or double stars (of the same color), respectively. A statistical evaluation of the data is contained in Supplementary Table S4. wild-type and mutant plants in the proteoliposome system might provide the ultimate answer to the question, whether or not PEP transport across the envelope membrane of plastids is blocked when both PPTs and the XPT are missing. However, as Figure 7 reveals, this block in PEP transport was not observed. After subtracting the unspecific P i uniport in the presence of gluconate, there was still around 34% PEP/P i counter-exchange detectable in the triple mutant compared to the wild type ( Figure 7B). Small changes of PEP transport observed between the ppt2-1 single mutant and Col-0 and between cue1-6/ppt2-1 and cue1-6 ( Figure 7B) were statistically not significant (Supplementary Table S4). The same applies for changes in P i transport ( Figure 7A).
The transport data with single, double, and triple mutants underline the phenotypic appearance of the same lines and suggest that neither the absence of PPT2 nor XPT have a strong effect on PEP deficiency in plastids. From the above experimental approach it appears likely that activities of other PTs are responsible for PEP transport across the envelope.

DISCUSSION
Here we have focused on the physiological role of TP and PEP transport mediated by the XPT, which are most likely only side activities of the major path, i.e., the retrieval of pentose phosphates from the extraplastidial space (Hilgers et al., 2018). The data in this report demonstrate clearly that (1) the XPT can support or even partially substitute the TPT due to its TP transport capacity. This notion was reinforced by the observation that a complete block of all known ways to export photoassimilates from the chloroplasts, including the XPT, resulted in a lethal phenotype. (2) Most surprisingly, neither the XPT or PPT2 alone, nor in combination, could obviously deteriorate the dramatic growth retardation of the cue1-6 mutant, indicating that other processes, including transport, support the residual viability of cue1-6, in particular in the cue1-6/ppt2-1/xpt-1 triple mutant. (3) As an additional result of our study, we could show that PEP transport mediated by the recombinant XPT of A. thaliana and by extracts from Col-0 leaves could be improved by lower pH-values, suggesting that PEP 2− is the transported charge-species. As discussed in more detail below, the data presented here will have wide-reaching implication for our understanding of the functional roles of PTs in various metabolic pathways as well as tissue-type specific developmental processes.
The XPT Can Support the TPT in the 'day Path of Carbon' The beneficial role of the XPT for survival of mutant plants impaired in the day-and night-path of photoassimilate export from chloroplasts could be confirmed in this study. As already expected from theoretical considerations Schmitz et al., 2012Schmitz et al., , 2014, the triple knockout mutant, adg1-1/tpt-2/xpt-1, was not viable anymore. The deficiency in the known ways of carbon export from the chloroplasts resulted in the death of the plants within six to 15 days when grown in soil. Moreover, GPT2, which can be induced by feeding of sugars, was not responsible for the survival of the triple mutant grown on 1/2MS agar plates supplemented with 50 mM Suc. The absence of GPT2 in the adg1-1/tpt-2/xpt-1 background had no additional negative effect on the already harsh growth phenotype of the triple mutants even in the presence of an external carbon source (compare Supplementary Figure S2B). This observation resembled earlier ones made with the adg1-1/tpt-2/gpt2-1 triple mutant , where the absence or presence of GPT2 had no influence on the sugar-dependent rescue of the adg1-1/tpt-2 double mutant (Heinrichs et al., 2012;Schmitz et al., 2012). In contrast, here even the heterozygous defect of the XPT in the adg1-1/tpt-2 background resulted in a significant drop in the F v /F m -ratio by about 33% in seedlings grown on sucrose-containing medium, suggesting a dosage effect of XPT expression on photosynthesis parameters. Still, it remains to be shown whether or not ectopic overexpressions of the XPT or of GPT2 would be capable of completely rescuing the adg1-1/tpt-2 phenotype.
Knockouts of PPT2 and the XPT in the cue1-6 Background Are Viable The most striking and unexpected outcome of this study were the only minor additional constraints when either or both PPT2 and XPT were knocked out in the cue1-6 background. Here a lethal phenotype would have been expected, like crop plants show that were treated with the shikimate pathway herbicide glyphosate. However, apart from a slightly restricted relative ETR and an increase in NO, as non-photochemical quench parameter, vegetative growth was not stronger affected in the cue1-6/ppt2-1/xpt-1 triple mutant as compared to cue1-6 or the cue1-6/ppt2-1 and cue1-6/xpt-1 double mutants. Moreover, comparisons of generative development between the lines was complicated by the fact that both wild-type accessions already showed larger differences in e.g., silique numbers per plants. Using different alleles of the xpt mutant for genetic crosses and/or artificial microRNA:XPT approaches in single or double mutant backgrounds Hilgers et al. (2018) might eliminate such unwanted side effects in future studies, and more subtle differences in various aspects of growth will probably show up. However, more important compared to subtle effects on growth between the lines was the observation that the triple mutants still exhibited substantial PEP transport capacities, which were similar to those of the cue1-6 single mutant. Again potential differences between transport rates of individual wild-type accessions (see Kunz et al., 2010) have not been assessed in this experiment.
The second unexpected outcome was the only moderate growth phenotype of both knockout alleles of PPT2 (i.e., ppt2-1 and ppt2-2) leaving photosynthesis, leaf constituents, or transport unaffected.
PEP provision to plastids not only relies on import, but also on pathways capable of generating PEP inside the plastids (Flügge et al., 2011). The most prominent pathway is glycolysis involving a plastidial enolase (ENO1). In an earlier report we could demonstrate that ENO1 is absent from mature leaves of A. thaliana, but can be present in generative and meristematic tissues (Prabhakar et al., 2009;and references therein). Indeed the absence of PEP provision to plastids in certain developmental stages could lead to lethality of gametophytes or embryos, as has been demonstrated for cue1-6/eno1 double mutants (Prabhakar et al., 2010). These data support the importance of plastidial PEP for plant development and metabolism, but they also showed that other transporters, like PPT2 could not compensate for a deficiency in PPT1, particularly not in cue1-6/eno1 double mutants. Moreover, additional ways to produce PEP from pyruvate, for instance via a plastidial localized pyruvate phosphate dikinase (PPDK) could also be ruled out in the cue1-6/eno1 double mutant. This was surprising because the cue1 mutant phenotype could be rescued both by overexpression of a heterologous PPT from cauliflower buds and a C3-type PPDK from Flaveria pringlei targeted to the plastids , indicating the crucial role of plastidial PEP in the development of the cue1 phenotype. Moreover, cue1 could also be complemented by constitutive overexpression of the homologous A. thaliana PPT1, but only partially by PPT2 (Knappe et al., 2003). The latter experiment casts some doubt on functional similarities between PPT2 and PPT1, i.e., both translocators differ, for instance, in their capacities to transport PEP or 2-PGA (Table 1). Moreover, for tissues that contain a complete plastidial glycolysis, the PPT might act as overflow valve for cytosolic or plastidial PEP (Staehr et al., 2014). Whilst in chloroplasts the PPT might function as a net PEP importer based on concentration gradients across the inner envelope membrane, in root plastids, PEP might be exported, again based on concentration gradients and the demand for glycolytic intermediates in both compartments.
Still, internal ways to produce PEP in plastids cannot explain the substantial PEP transport rate detected in the cue1-6/ppt2-1/xpt-1 triple mutants. It is hence tempting to speculate that other PTs apart from both PPTs and the XPT might also be involved in PEP transport. The most promising candidates are both GPTs, which exhibited maximum PEP transport capacities of up to 40% of the P i transport (Table 1). However, K m -values for PEP have not been determined for the GPTs of A. thaliana. For the GPT from Pisum sativum roots, the K m -value for PEP was in the same order of magnitude as for the XPT from A. thaliana. In order to support or even functionally substitute each other, the respective PTs have to be present in the same tissue. For both GPTs of A. thaliana, GPT2 is usually not expressed in leaves and GPT1 expression is restricted to the mesophyll adjacent to the vasculature (bundle sheath) and the stomatal guard cells. The latter has been shown in A. thaliana plants expressing a GPT1 promoter::GUS construct Niewiadomski et al. (2005). Moreover, the functionality of GPT1 has been indirectly demonstrated by the fact that double mutants deficient in GPT2 (to avoid Glc6P-transport in addition to that catalyzed by GPT1) and plastidial phosphoglucose isomerase (PGIp) produced starch granules both in the bundle sheath and in guard cells, whereas the mesophyll was starch-free (Kunz et al., 2010). Starch biosynthesis in leaves hence relies on the import of Glc6P from the cytosol in the absence of PGIp. In this study a functional GPT1 in the triple mutant might be sufficient for the detected PEP transport rate shown in Figure 7. Furthermore, as all cue1 alleles are characterized by a reticulate leaf phenotype with large intercellular air spaces in the mesophyll, but intact bundle sheath (Kinsman and Pyke, 1998), the functional GPT1 might even be overrepresented in the cue1-6 background as compared to the wild-type and other mutant plants.

PEP Transport Is Improved by pH-Values Close to Neutral and Below
Here the kinetic studies with the recombinant XPT confirmed data by Eicks et al. (2002) that, in principle, the XPT is capable of transporting PEP. Moreover, as shown in the present report, the PEP transport rate could be substantially increased with a decrease in the pH-value. At an internal pH of 6.0 inside the proteoliposomes, P i and PEP were even transported with the same rates. The strong pH-dependency of PEP transport could be confirmed in the proteoliposome system with extracts from Col-0 leaves, containing a mixture of all PTs, suggesting that an enhanced PEP transport at pH-values below 8.0 appears to be a general property of the respective PTs. From our data it appears very likely that the 2-fold rather than the 3-fold negatively charged PEP species (i.e., PEP 2− ) is the true transport substrate. Thus the XPT and probably also the PPTs (or GPTs) resemble the TPT with respect to its transport characteristics of phosphorylated organic acids (Fliege et al., 1978). In contrast to 3-PGA or P i , which possess pK a -values for the conversion of the 2 − to the 3 − forms of 7.1 and 12.5, respectively, the pK a3 for PEP lies at around 6.4, indicating that with increasing pH less PEP 2− would be available for transport. In particular if the stromal pH of illuminated chloroplasts of about 8.0 is considered, PEP transport into chloroplast from the cytosol at pH-values close to neutral might be irreversible. However, in darkened chloroplasts or non-green plastids, PEP 2− transport across the inner envelope might occur in both directions because the steep pH-gradient between both compartments is missing (see also Staehr et al., 2014). PEP transport determined with the recombinant XPT expressed in yeast or PTs extracted from Col-0 leaves depend most likely directly on the availability of PEP 2− . Thus the pH-dependency of PEP transport is governed by PEP 2− concentrations and the K m -value for PEP 2 , rather than by functional groups of amino acids at the substrate binding site of the PTs. Moreover, differences in inhibition curves of homologous 32 Pi/ 31 Pi exchange by increasing PEP concentrations at pH 7 and 8 might point at altered binding mechanisms. An observation that needs to by addressed in future studies.

CONCLUSION AND OUTLOOK
Apart from the important experimental proof that the XPT is indeed involved in photoassimilate export from the chloroplast, the data in the present report show a number of new aspects, in particular with reference to PEP transport, that are awaited to be addressed in future studies. The functional role of PPT2 is still not clear. According to Table 1, the A. thaliana PPT2 has even a higher PEP transport capacity compared to PPT1. Still both single mutant alleles show only a moderate growth phenotype. Moreover, in cue1-6/ppt-2 double mutants the growth retardation observed for both single mutants was not additive; it was thus governed by the harsh phenotype of cue1. More refined analyses are required to elucidate the functional role of PPT2 in wild-type plants as well as in the cue1-6 background. In addition the physiological role of the XPT as PEP transporter besides of PPT1 is questionable.
Strikingly, there are indications that the GPTs might also be involved in PEP transport. In leaves a functional GPT1 might be responsible for the residual PEP transport observed in extracts of the cue1-6/ppt2-1/xpt-1 triple mutant ( Figure 7B). Moreover, it is tempting to speculate that PPT1 and GPT1 might be the only functional PEP transporters in leaves, regardless of PPT2 expression in the leaf blade (Knappe et al., 2003). If PPT1 is knocked out in cue1, the mutant plants show severe growth retardation and the characteristic reticulate leaf phenotype. The intact areas of the leaves, i.e., the bundle sheath, represents the area of all parts of the leaf where GPT1 is most likely functionally expressed, suggesting that the absence of both PTs might worsen the cue1 phenotype, an assumption that needs to be addressed experimentally. However, previous PPT1 promoter::reporter gene studies temper the enthusiasm about the above hypothesis, since the PPT1 promoter is also highly active in the vasculature of the leaves (Knappe et al., 2003). In future studies additional techniques for the verification of tissue or cell type specific expression profiles, like post-translational fusions with reporter genes are required. Moreover, expression profiles of PTs and selected genes involved in metabolic pathways linked by the individual PTs in wild-type and mutant plants of the present report combined with in silico studies might help to understand the fine tuning of transcriptional regulation.
Although in recent studies the structural basis for substrate specificities of PTs has been addressed (Lee et al., 2017), the data in the present study indicate that our knowledge on transport characteristics of PTs is still rather sparse. For instance, kinetic constants like K m or K i were determined only for PTs from certain plant species. Against the background of substantial differences in maximum transport capacities and substrate specificities of PTs from different sources or even from the same source, like the A. thaliana PTs, (Table 1), this might also be true for their kinetic constants. A detailed and systematical analysis of transport characteristics including pH-dependencies of PTs from one species (in this case A. thaliana) is still missing. The knowledge of kinetic constants and substrate specificities of the transporters combined with their temporal and spatial expression pattern is inevitable on the way to model the behavior of plants in response to environmental changes as well as abiotic or biotic stresses. Moreover, local pH-gradients generated for instance by ATPases at the inner envelope ought to be considered as well when transport processes across membranes are evaluated (McCarty et al., 1984). One of the major conclusions, which can be derived from our study, is that our knowledge of the precise roles of certain transporters, here the XPT and PPT2, is still rather fragmentary although interesting and new aspects have been elucidated.

AUTHOR CONTRIBUTIONS
EH conducted most of the experiments in the lab. PS isolated the ppt2-1 mutant. U-IF provided valuable advices and co-supervised the project. RH supervised the project, conducted the transport measurements, and wrote the article.

ACKNOWLEDGMENTS
We would like to thank Kirsten Bell for her assistance in crossing various mutant lines and the student helper Kristin Gehling for her general support in the lab.

SUPPLEMENTARY MATERIAL
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpls.2018.01461/ full#supplementary-material DATA SHEET S1 | Contains 8 Supplementary Figures. Tables including 3 Tables with a  statistical analysis.