Stone Fruit as Biofactories of Phytochemicals With Potential Roles in Human Nutrition and Health

Phytochemicals or secondary metabolites present in fruit are key components contributing to sensory attributes like aroma, taste, and color. In addition, these compounds improve human nutrition and health. Stone fruits are an important source of an array of secondary metabolites that may reduce the risk of different diseases. The first part of this review is dedicated to the description of the main secondary organic compounds found in plants which include (a) phenolic compounds, (b) terpenoids/isoprenoids, and (c) nitrogen or sulfur containing compounds, and their principal biosynthetic pathways and their regulation in stone fruit. Then, the type and levels of bioactive compounds in different stone fruits of the Rosaceae family such as peach (Prunus persica), plum (P. domestica, P. salicina and P. cerasifera), sweet cherries (P. avium), almond kernels (P. dulcis, syn. P. amygdalus), and apricot (P. armeniaca) are presented. The last part of this review encompasses pre- and postharvest treatments affecting the phytochemical composition in stone fruit. Appropriate management of these factors during pre- and postharvest handling, along with further characterization of phytochemicals and the regulation of their synthesis in different cultivars, could help to increase the levels of these compounds, leading to the future improvement of stone fruit not only to enhance organoleptic characteristics but also to benefit human health.

biosynthesis of these compounds or in their chemical modification to produce more compounds with better activity, as well as the identification of pre-and postharvest managements that could increase their levels, will aid in the future improvement of stone fruit for the benefit of human health.
Phytochemicals known as secondary metabolites possess diverse physiological properties, being involved in sensory attributes (aroma, taste and color) and in defense against pathogens, different kind of stresses and/or injuries (Tomas-Barberan et al., 2001;Montevecchi et al., 2013). Besides, the secondary metabolites of plants are highly beneficial to consumers. In this regard, in recent decades, consumers have become more aware of the relationship between diet and diseases. Today, there is a broad consensus that increased consumption of fruits and vegetables contributes to improving health and well-being by reducing the risk of diseases, such as cardiovascular diseases and some forms of cancer (Riboli and Norat, 2003;Hung et al., 2004). The Joint FAO/WHO (Food and Agriculture Organization/World Health Organization) report on diet, nutrition, and prevention of chronic diseases recommended in 2003 the intake of a minimum 400 g of fruits and vegetables per day, ideally 800 g, for the prevention of chronic diseases such as cancer, diabetes, heart disease and obesity (WHO Technical Report Series, 2003).
The health promoting properties of fruits and vegetables are due to the presence of some vitamins (such as A, C, E, and folates), dietary fibers, and secondary metabolites, some of which are unique of plants. Phenolic compounds, among which flavonoids are the most ingested during daily life from products of plant origin (Chun et al., 2007), are important secondary organic metabolites in terms of their health-promoting properties, with possible preventive role in neurological disorders and potential protection against chronic diseases (Weng and Yen, 2012;Silva and Poganik, 2020). In addition, different biological activities have been described for chlorogenic acid, a phenolic compound, which include antiinflammatory (Liang and Kitts, 2016), anticancer (Liu Y. J. et al., 2013), antioxidant power, including the inhibition of lipid oxidation , antilipidic, antiepileptic, neuroprotective (Aseervatham et al., 2016), antidiabetic (Meng et al., 2013), and antihypertensive (Suzuki et al., 2006;Zhao et al., 2012). This phenolic compound has also beneficial effects in disorders related to the metabolic syndrome (Bhandarkar et al., 2019a;Bhandarkar et al., 2019b). Moreover, it possesses antimicrobial activity against a wide range of organisms, including bacteria, yeasts, molds, viruses, and amoebas, and thus, it could be used as an antimicrobial agent (Santana-Gaĺvez et al., 2017) for the preservation of food products. In addition, anthocyanins, another group of polyphenols, prevent tumor development by inhibiting cancer cells proliferation when tested in vitro and in vivo. Anthocyanins also exhibit anti-inflammatory activity, present neuroprotective, antiobesity, antidiabetic activities and are proposed to prevent cardiovascular disease (extensively reviewed in Li et al., 2017). With respect to caroteonids, their role in human nutrition is well established as precursors of vitamin A and due to their antioxidant activity. Their protective function in liver health is well documented and reviewed by Elvira-Torales et al. (2019). Other metabolites that have received attention are the cyanogenic glycosides, which possess anticancer properties (Fukuda et al., 2003, Jaswal et al., 2018. Different studies have indicated that stone fruits are particularly rich in important phytochemicals, which constitute an extra benefit to their pleasant taste and flavor. These metabolites include phenolic compounds and terpenoids, among others. Peach, plums, cherries have an important antioxidant activity due to their phenolic content (Kim et al., 2003b;Cevallos-Casals et al., 2006;Serra et al., 2011). In vitro studies have demonstrated the antimicrobial activity of plum and peach extracts (Cevallos-Casals et al., 2006;Belhadj et al., 2016). In vitro and ex vivo studies also showed the antiinflammatory properties of P. persica extracts (Gasparotto et al., 2014). Pharmacological studies showed that P. persica has antihypertensive properties (Kim et al., 2019), and it influences the central cholinergic system (Kim et al., 2003c). Moreover, intake of peaches protects rat tissues from nicotine toxicity (Kim et al., 2017). Almond intake reduces cardiovascular disease risk by modulating plasma lipoproteins (extensively reviewed in Berryman et al., 2011), contributes to satiety (Hull et al., 2015), delays lipid bioaccessibility (reviewed in Grundy et al., 2016), and decreases inflammation and oxidative stress (reviewed in Kamil and Chen, 2012). Apricot has also an important therapeutic and nutritional value. Among its health promoting activities, antimicrobial, antimutagenic, cardioprotective, hepato-protective, and antioxidant properties have been described (Ozturk et al., 2009;Erdogan-Orhan and Kartal, 2011;Yurt and Celik, 2011;Chen et al., 2020). alkaloids, indole glucosinolates, flavonoids, hydroxycinnamic acids, lignins, and lignans.

Phenolic Compounds
Phenolic compounds are synthesized from shikimic/ phenylpropanoid and the phenylpropanoid-acetate-malonate pathways and encompass a large group of monomeric and polymeric phenols and polyphenols. Phenylalanine is the precursor of a wide range of volatiles including phenylpropenes, phenylpropanes, phenethyl derivatives, and benzenoids (Gonda et al., 2018).
Phenylpropanoids are simple phenolic compounds with a benzene ring and a lateral chain, which serve as precursors of compounds such as benzoic acid derivatives, flavonoids, coumarins, stilbenes, lignans and lignins, and condensed tannins (Oksana et al., 2012). The phenylpropanoid pathway initiates with phenylalanine synthesized in the shikimic acid pathway, which generates cinnamate by the action of phenylalanine ammonia lyase (PAL, Figure 2). The consecutive action of cinnamic acid 4-hydroxylase (C4H) renders 4-coumarate that finally gives 4-coumaroyl-CoA by the action of 4-coumarate-CoA ligase (4CL).

Flavonoids
Flavonoids consist of a fifteen-C phenylpropanoid core (the flavan skeleton) formed by two aromatic rings connected by a heterocyclic pyran ring (C 6 -C 3 -C 6 ). Depending on the oxidation and number of unsaturations of the pyran ring, flavonoids are classified into different groups named as flavones, flavanones, isoflavones, flavonols, 3-deoxy flavonoids, and anthocyanins (Andersen and Markham, 2005).
The existence of large number of flavonoids is the consequence of the different modifications on the main compounds by the action of different glycosyltransferases, methyltransferases, and acyltransferases (Saito et al., 2013). Flavonoid aglycones can be glycosylated at positions C-3, C-5, and C-7. The ability to glycosylate flavonol, anthocyanidin, and anthocyanin aglycones depends on the type of glycosyltransferase (Saito et al., 2013). Instead, flavonoid methyltransferases (FMTs) methylate flavonols giving isorhamnetin (Tohge et al., 2007).
Enzymes of the flavonoid biosynthetic pathway are grouped forming metabolons channelizing the different intermediates into the different routes (Winkel-Shirley, 1999). Although being cytosolic, the enzymes of the flavonoid pathway are bound to the cytoplasmic face of the endoplasmic reticulum by interacting with cytochrome P450 proteins (Saslowsky and Winkel, 2001). In addition, enzymes of the pathway such as CHS, CHI (Saslowsky et al., 2005), and FLS (Kuhn et al., 2011) have also been found in the nucleus.

Anthocyanins
Anthocyanins are water-soluble pigments belonging to the flavonoids and one of the main compounds responsible for coloration in plants (Tanaka et al., 2008). Their accumulation in the vacuole gives red, orange, blue, and purple color to different plant tissues and organs (Grotewold, 2006). Fruit color is a key quality trait, in which anthocyanin accumulation is involved.
Anthocyanin synthesis occurs in the cytosol through the flavonoid biosynthetic enzymes associated with the cytoplasmic face of the endoplasmic reticulum (Winkel-Shirley, 1999). Once formed, anthocyanins are stored in the vacuole to prevent oxidation (Marrs et al., 1995). Glutathione S-transferases (GSTs), transporters, and vesicles are involved in their transport into the vacuole (Grotewold, 2004). Depending on the species, anthocyanins are found uniformly distributed inside the vacuole or accumulated in discrete sub-vacuolar structures (Grotewold and Davis, 2008) anthocyanoplasts, intravacuolar pigmented globules' (cyanoplasts, Nozue et al., 1993) or anthocyanic vacuolar inclusions (Markham et al., 2000).
The anthocyanin biosynthetic pathway is transcriptionally controlled by MYB and basic helix-loop-helix (bHLH) transcription factors, together with the WD40 proteins characterized by seven regions of 40 amino acids rich in tryptophan and aspartic acid (Quattrocchio et al., 1999;Hernandez et al., 2004). The ternary complex regulates the steps of the pathway in a spatial and temporal way during plant development (Hichri et al., 2011), and it is called MBW complex (Gonzales et al., 2008). bHLH and WD40 act as coactivators of MYBs, which may repress or activate anthocyanin biosynthetic genes (Koes et al., 2005;Dubos et al., 2008). bHLH proteins are essential to enhance the MYB-induced anthocyanin synthesis. NAC proteins are also involved in the regulation of anthocyanin synthesis in Arabidopsis (Morishita et al., 2009). Different factors such as light, temperature, and hormones modulate anthocyanin synthesis (Jeong et al., 2004;Takos et al., 2006;Steyn et al., 2009;Zhang et al., 2012). Anthocyanin biosynthesis is also developmentally controlled as demonstrated by the variation of promoter methylation of MdMYB10, the master regulator of the anthocyanin pathway in apple (El-Sharkawy et al., 2015).
Studies about the regulation of the biosynthesis of some secondary compounds have been started to emerge in the Rosaceae family (Lin- Wang et al., 2010). In Japanese plum (Prunus salicina), RNA seq analysis allowed the identification of genes involved in anthocyanin synthesis. In the late stages of fruit maturation, when anthocyanin content increases, the expression of several genes, such as PsPAL, PsC4H, Ps4CL, PsCHS, PsCHI, PsF3H, PsF3′H, PsDFR, PsANS/LDOX, PsUFGT, and PsGST, is increased. Fang et al. (2016) found that MYBs expression correlated with structural genes. While c39005.graph_c0 (homologous to AtMYB113) positively correlated with anthocyanin biosynthetic genes, c29499.graph_c0 (homologous to AtMYB73) and c32850.graph_c0 (homologous to AtMYB102) showed a negative correlation. With respect to bHLH transcription factors, 36695.graph_c0 (homologous to AtTT8) positively correlated with anthocyanin contents, and 33382.graph_c0 (homologous to AtbHLH14) decreased with ripening. In addition, a gene encoding a NAC (c27539.graph_c0, AtNAC100) was also upregulated and positively correlated with the expression of genes involved in anthocyanin synthesis (Fang et al., 2016).
In prunus, levels of anthocyanins are responsible for the color and vary depending on the genotype, external factors, and organs. Moreover, Cheng et al. (2015) revealed that PsPAL, PsCHS, PsCHI, PsF3H, PsDFR, PsLDOX, and PsUFGT are up-regulated by ethylene treatment and repressed by 1-MCP. They showed that PsMYB10 is involved in this regulation. More recently, Niu et al. (2017) demonstrated that at high temperatures, anthocyanin levels are regulated not only by the synthesis but also by their degradation. Furthermore, they showed that hydrogen peroxide triggers anthocyanin enzymatic degradation via catalysis by a vacuolar peroxidase. Furthermore, Cheng et al. (2014) showed the expression of PpUGT78A1, PpUGT78A2, PpUGT78B, and PpUGT79B, encoding flavonoid 3-O-glycosyltransferase, varies among tissues and development, conducting the different patterns of anthocyanin accumulation. Different studies were conducted to get insight into anthocyanin level regulation exploring the eventual redundancy of TFs during peach ripening (Lin- Wang et al., 2010;Ravaglia et al., 2013;Rahim et al., 2014). Analysis of MYB10 sequences reveals that R2R3 sequences from Rosaceae are highly conserved (Lin- Wang et al., 2010). Of the six MYB10s detected in peach genome  only PpMYB10.1-3 is expressed in the fruit (Rahim et al., 2014). Transient luciferase assays in Nicotiana benthamiana probed that PpMYB10.2 from peach (as well as those from pear, European plum, cherry-plum, cherry and apricot, denominated PcMYB10, PdmMYB10, PcfMYB10, PavMYB10, ParMYB10, and PprMYB10, respectively) induced anthocyanin synthesis activating Arabidopsis DFR-promoter when co-expressed with a bHLH (Lin- Wang et al., 2010). In addition, in the presence of bHLH, PpMYB10.2 also transactivated a reporter gene driven by a peach UFGT promoter (Ravaglia et al., 2013). PpMYB10.1 and PpMYB10.3 were shown to correlate with anthocyanin content in the peel, mesocarp, and mesocarp around the stone of peach fruit and with anthocyanin structural genes CHS, F3H, DFR and UFGT (Rahim et al., 2014). According to Tuan et al. (2015) PpMYB10.1 is a key factor regulating anthocyanin levels in redskinned peach (Japanese peach cultivar 'Akatsuki') and that it activates PpUFGT transcription. They proposed that PpMYB10.2/ 3 could have a different role than pigment regulation since in 'Mochizuki' and 'Akatsuki' cultivars the transcript levels of PpMYB10.2 and -3 do not correlate with anthocyanin accumulation. Moreover, PpMYB10.2 was expressed in leaves that do not exhibit anthocyanin accumulation. In addition, Zhou et al. (2014) also indicated that PpMYB10.2 is not involved in anthocyanin synthesis in leaves. On the other hand, PpMYB10.4 is expressed in leaves, and it controls anthocyanin accumulation in this organ. PpMYB10.4 is mapped within the interval of the red allele that controls peach leaf color . Studies in flowers reveal that PpMYB9, is an activator highly expressed in peach flowers and it regulates UFGT gene expression. In the presence of PpbHLH3, PpMYB9 is able to induce anthocyanin synthesis when expressed in tobacco leaves. It is proposed that the PpMYB9 genes have diverged in functions from the MYB10 genes . PpMYB17-20 are repressors, which levels varied during the different stages of flower development .
Among three different bHLH candidate genes (based on homology with Arabidopsis), PpbHLH3 allowed the induction of the pigments when PpMYB10.1 or PpMYB10.3 were expressed in tobacco. Analysis of the genome reveals that PpMYB10.1-3 are located within 80 kb on pseudomolecule 3, within the two closest markers (CC2 and CC12A) to the anther color trait, and thus highlighting the role of these transcription factors in the anthocyanin synthesis regulation (Rahim et al., 2014). On the other hand, Zhou et al. (2015b) analyzing the segregation of the blood-flesh trait attribute (due to anthocyanin accumulation) in a peach landrace Dahongpao showed that PpMYB10.1 did not co-segregate with this trait (Zhou et al., 2015b). However, by heterologous expression in tobacco, they found that BLOOD (BL), a NAC transcription factor, and PpNAC1 act together to transactivate the PpMYB10.1 gene. PpSPL1, a SQUAMOSA promoter-binding protein-like transcription factor (SPL), represses this transactivation. Another R2R3-MYB gene regulating PA synthesis in peach is PpMYB7, which activates the transcription of PpLAR1 but not PpANR. PpMYB7 promoter has an ABA-dependent DRE2 element and it can be activated by the basic leucine-zipper 5 TF PpbZIP5 via the ABA signaling (Zhou et al., 2015a).
In peach, anthocyanin accumulation is also influenced by light quality (including UV-B, UV-A, blue light and (far) red light) and depends on the genetic background (Liu T. et al., 2015). The expression of bHLH3 also correlated with induction of anthocyanin synthesis in peach peel under UV exposure . Light effect is likely mediated by PpHYH that is also homologous to A. thaliana HY5, rather than by PpHY5 . In addition, ppa009438m, ppa009380m, ppa026582m, ppa007883m, and ppa025263m encoding PpNACs responded to UV-B light. Nevertheless, BL and PpNAC1 did not respond to UV-B treatment in 'Hujingmilu' and 'Yulu' cultivars . Therefore, the levels of anthocyanin in peach fruit are complexly controlled by the coordination of a set of transcription factors.
Other transcription factors such as PpMYBPA1 (ppa009439m) and Peace (ppa023768m) that is phylogenetically related to PpMYBPA1, have been identified in RNAseq studies and related to the regulation of proanthocyanin (PA) biosynthesis in peach fruit . PpMYBPA1, as in the case of PpMYB7, can be activated by PpbZIP5 via the ABA signaling (Zhou et al., 2015a). In flowers, PpMYBPA1 and Peace were to be expressed at bud stage and were shown to activate PpLAR and PpANR promoters .
While many advances have been conducted to elucidate the transcription factors controlling anthocyanin accumulation in peach, less information is available with respect to apricot. Some cultivars have blushed skin due to the presence of cyanidin-3-Oglucoside, cyanidin-3-O-rutinoside, and peonidin-3-Orutinoside. Thus, anthocyanin presence and accumulation depend on the cultivar. In apricot, PaMYB10 also correlated with anthocyanin accumulation in blushed apricots and with PaMYB10, PaPAL, PaCHS, PaCHI, PaF3H, PaDFR, PaLDOX, and PaUFGT. The overexpression of this MYB transcription factor in fruits of Luntaixiaobaixing cultivar conducted the red coloration of the skin. PaMYB10 was found to be located with Linkage group 3 (G3) related to skin color (Garcıá- Goḿez et al., 2019). In addition, it was probed that anthocyanin accumulation in apricot was also influenced by light, as fruit bagging affects the coloration of the skin . Sugars were also correlated with the content of cyanidin-3-O-glucoside and cyanidin-3-Orutinoside; as it the case of sorbitol, glucose, fructose and sucrose (Huang et al., 2019). Further studies are required to decipher the way in which sugars affect anthocyanin synthesis in apricot.
In sweet cherry, the expression of PacCHS, PacCHI, PacF3H, PacDFR, PacANS, and PacUFGT correlated with anthocyanin accumulation . The regulation of this pathway has started to emerge. Sequencing of cDNAs encoding enzymes involved in the synthesis of anthocyanins or their regulators (bHLH and WD40) confirms the conservation at sequence level within the Prunus genus (Starkevičet al., 2015). Up to now, PavMYB10, PavMYBA, and PavMYB1 have been studied in sweet cherries (Lin-Wang et al., 2010;Shen et al., 2014;Starkevičet al., 2015;Jin et al., 2016). The first transcription factor modulating the pathway characterized was PavMYB10, which was probed to correlate with anthocyanin accumulation in fruit (Lin- Wang et al., 2010). Two sub-variants of PaMY10.1, PaMYB10.1-1 and -3, were later studied. By studying fruits at different stages of development from different cultivars of P. avium, Starkevičet al. (2015) indicated that PaMYB10.1-1 parallels that of anthocyanin accumulation and that PaMYB10.1-3 is expressed at low levels in fruit. Nevertheless, when transiently expressed in tobacco, PaMYB10.1-3 was able to induce pigment synthesis. It was also shown that PavMYB10.1 has three alleles PavMYB10.1a-to -c. These alleles are responsible for the variation in color of the fruit. PavMYB10.1a regulates the expression of PavANS and PavUFGT by binding with PavbHLH and PavWD40 (Jin et al., 2016). Jin et al., 2016 proposed that PavMYB10.1 is a DNA molecular marker for the color of the skin.
With respect to bHLHs, PabHLH3 and -33 are expressed in fruit. While PabHLH3 co-activates anthocyanin biosynthesis in the presence of MYB, PabHLH33 acts as a co-repressor (Starkevičet al., 2015). In addition, PavMYBA, encoding for a R2R3-MYB TF from red-colored sweet cherry, was studied. Transient assays demonstrated that this factor binds to bHLHs and activates the expression of PavDFR, PavANS, and PavUFGT. In addition, ABA modulated the synthesis of anthocyanins in cherry fruit, with PavMBA involved in this process (Shen et al., 2014).
To mention an example of biosynthesis, carotenoids are synthesized from GGPP using phytoene synthase (PSY) which condenses two molecules of GGPP to render 15-cis phytoene. The following enzymes in the route are phytoene desaturase (PDS), 15-cis-z-carotene isomerase (ZISO), z-carotene desaturase (ZDS), and carotenoid isomerase (CRTISO) giving trans-lycopene (Liang et al., 2018). Lycopene is the precursor of many molecules of biological importance, the d-, g-, a-, ϵ-, and b-carotenes. Carotenes are also important precursors; lutein and xanthopylls derive from aand b-carotene, respectively (for further details, see Liang et al. (2018)). Apocarotenoids are the result of the oxidative cleavage of carotenoids. Examples of apocarotenoids are the derivatives of b-ionone that have pleasant scent and aroma in fruits and flowers (Hou et al., 2016). While many efforts have been dedicated to the elucidation of carotenoid metabolism in plant species, little is known about the regulation (Pott et al., 2019).
Regulation of carotenogenesis has been exhaustively investigated in tomato fruit and Arabidopsis, and it has been also comprehensively reviewed (Llorente et al., 2017;Stanley and Yuan, 2019). Transcription factors such as phytochrome interacting factors (PIFs), ethylene response factors (ERFs), MADS ripening inhibitor factor (RIN) are some of the many TFs that modulate carotenoids synthesis. Both environmental conditions (i.e. light) and developmental cues control the carotenoid biosynthetic genes (Llorente et al., 2016;Sun et al., 2018). The control of carotenoid accumulation is also exerted at posttranscriptional and posttranslational levels (Stanley and Yuan, 2019). Biosynthesis, degradation, and storage mediate carotenoids homeostasis as well (Li and Yuan, 2013).
The first study of regulation of carotenoids' synthesis regulation in apricot was conducted comparing varieties with contrasting colors. It showed similar regulation of the synthesis of the colorless carotenoids phytoene and phytofluene due to ethylene upregulation of PSY1 and PDS. In this study, while great differences in b-carotene levels were found in two varieties, accumulation of ZDS was found in both varieties (Marty et al., 2005). Further, RNAseq analysis revealed that structural genes like PDS1, carotenoid cleavage dioxygenase (CCD)1 and 4, violaxanthin de-epoxidase 1 (VDE1) and zeaxanthin epoxidase (ZEP) are the main regulatory points for carotenogenesis (Zhang  . In peach, studies regarding carotenoid accumulation in the mesocarp have been focused on carotenoid cleavage. CCDs control carotenoid degradation, and therefore color accumulation. PpCCD4 encodes a carotenoid dioxygenase. High transcript levels increase carotenoid degradation producing colorless compounds and thus, rendering white flesh. PpCCD4 is also associated with synthesis of carotenoidderived volatiles (Brandi et al., 2011;Adami et al., 2013;Falchi et al., 2013). In the mentioned studies and in Cao et al. (2017), although carotenoid synthesis is linked to their biosynthetic enzymes, correlation between biosynthetic genes' expression and carotenoid levels was not found. What is clear is that the levels of PpCCD4 increase in the flesh and the pulp of white varieties during development and ripening. Yellow varieties are characterized by a combination of higher levels of PpPDS and lower accumulation of PpCCD4 with respect to the white ones (Cao et al., 2017). In addition, while blue light treatment applied during storage was effective to stimulate the transcription of carotenoid biosynthetic genes in both yellow and white varieties, it was able to induce carotenoid accumulation only in yellow but not in white peach, indicating that in white peach the levels of main carotenoid biosynthetic genes are not the primary factor regulating carotenoid amounts (Cao et al., 2017).

Nitrogen-and Sulfur-Containing Secondary Metabolites
The third group of secondary metabolites is large and diverse. It includes alkaloids, glucosinolates, and cyanogenic glucosides.
Glucosinolates are nitrogen-and sulfur-containing metabolites generally restricted to the Brassicales (Grubb and Abel, 2006). Glucosinolates are diverse and their derivatives participate in plant defense and contribute to flavor and aroma (Grubb and Abel, 2006).
Alkaloids are nitrogenous compounds of low molecular weight derived mostly from amino acids (Ziegler and Facchini, 2008). This is a diverse group with a wide range of biological functions. According to their structure, alkaloids can be classified into "true" alkaloids with a heterocyclic nitrogen, protoalkaloids (no cyclic nitrogen), and pseudoalkaloids (e.g., steroidal and diterpene alkaloids, caffeine) (Waterman, 1998). The different biosynthetic pathways are in accord to their diversity in structure (Ziegler and Facchini, 2008).
Cyanogenic glycosides participate in plant defense and are widely distributed in the plant kingdom (Zagrobelny et al., 2008). The basic structure is a carbon backbone derived from an amino acid and a glycosilated cyanohydrin. The participation in plant defense mechanisms relays on the hydrolytic release of hydrocyanic acid potentially toxic to herbivores (HCN) (Drochioiu et al., 2008). The occurrence of cyanogenic glycosides has been described in species of the Fabaceae, Poaceae, Rosaceae, and Asteraceae, and also in conifers and ferns (Gleadow and Møller, 2014). Seeds from stone fruits of the Rosaceae family are rich in diglucoside (R)-amygdalin (Swain et al., 1992). In addition to kernels, the monoglucoside prunasin is also found in leaves, roots, stems (Dicenta et al., 2002;Sańchez-Peŕez et al., 2008). Both compounds are synthesized from phenylalanine. The sequential action of two cytochrome P450 enzymes belonging to the CYP79 and CYP71 families catalyze the synthesis of mandelonitrile (Yamaguchi et al., 2014), which is then glucosylated by a UDPglycosyltransferase (UGT) to form prunasin. This compound is then glucosylated again to form amygdalin.
In Prunus dulcis, two genes PdCYP79D16 and PdCYP71AN24 encoding CYP79 and 71 and three genes encoding UGTs involved in amygdalin (PdUGT94AF1 and PdUGT94AF2) and prunasin synthesis (PdUGT94AF3) were identified. The functionality and activities of the proteins were tested by expression in Nicotiana benthamiana. Comparisons of sweet and bitter almonds, which differentially accumulate amygdalin, indicated that the expression of PdCYP79D16 and PdCYP71AN24 is very low or null in the tegument of the sweet genotype and high in the bitter almonds (Thodberg et al., 2018). More recently, using map-based cloning and a segregating population for sweet kernel trait Sańchez-Peŕez and colleagues (2019) identified that bHLH2 controls the expression of PdCYP79D16 and PdCYP71AN24. A mutation in bHLH2 avoids the transcription of both genes, and thus mandelonitrile, amygdalin and prunasin are not synthesized. Selection of this mutation is proposed to have allowed the domestication of almond (Sańchez-Peŕez et al., 2019).
More than 100 volatile compounds have been identified in peach fruit. Volatile organic compounds define fruit aroma and participate, together with organic acids and sugars, in fruit taste. Aroma is a central trait that influences the fruit quality perception by consumers (Bruhn et al., 1991). In addition, volatile composition gives significant information regarding healthful composition of food since they are synthesized from essential nutrients (Goff and Klee, 2006). Peach volatiles have been classified into alcohols, aldehydes, carboxylic acids, noncyclic esters, terpenoids, ketones, and lactones (Wang et al., 2009;Sańchez et al., 2012). The most abundant are C 6 compounds, esters, benzaldehyde, linalool, C1 3 norisoprenoids, and lactones. The amounts of benzaldehyde, linalool, d-decalactone and (E)-2hexenal in four peach cultivars are presented in Table 2 to show their variability among cultivars.
During industrial processing of peach to produce juices, marmalades, concentrates and canned fruit, peel and stone are removed and discarded. Likewise, most of the times that fruit is freshly consumed; the peel is also discarded because of the use of chemicals and pest contamination or digestion problems. Nevertheless, both peels and kernels are a source of bioactive compounds. Indeed, many phytochemicals are more abundant in the fruit peel than in the edible fleshy parts. For example, phenolics (Tomaś-Barberań et al., 2001), carotenoids, and ascorbic acid double their amount in the peel than in the pulp The amounts of chlorogenic and neochlorogenic acids (hydroxycinnamic acids), quercetin-3-O-rutinoside or rutin (flavonol) and cyanidin-3-rutinoside (anthocyanins) are indicated in different cultivars and expressed in mg/100 g of fresh weight. c Zhao et al., 2015;d Dabbou et al., 2017;e Manganaris et al., 2017;i Kim et al., 2003a;j Tomas-Barberan et al., 2001;k Venter et al., 2013;l Dragovic-Uzelac et al., 2007;m Roussos et al., 2011;n Ruiz et al., 2005;°Schmitzer et al., 2011;s Goncàlves et al., 2004;t Usenik et al., 2008;u Martini et al., 2017. (Gil et al., 2002). Dabbou et al. (2017) showed that irrespective of the ripening stage, hydroxycinnamic acids, total flavonols, and total anthocyanins are higher in the peel than in the pulp. In contrast, the relative content of carotenoids depended on the harvesting stage. Peach kernels provide seed oil and fatty acids (Wu et al., 2011). In addition, kernels are a source of a wide range of metabolites of nutritional importance. The following secondary metabolites have been identified in peach kernels: protocatechuic acid, p-hydroxybenzoic acid, p-hydroxyphenylacetic acid, dihydroxybenzoic acid, chlorogenic acid, p-coumaric acid, ferulic acids, dithiothreitol, rutin, caffeic acid, procyanidin B2, hydrocinnamic acid, procatechol, catechin, gentisic acid, kuromanin chloride, vanillic acid, epicatechin gallate, sinapinic acid, and ellagic acid (Wu et al., 2011 andKoprivica et al., 2018), with catechin being prevalent.
Much effort has been dedicated to the characterization of the volatilome of peach as well as the profiling of other secondary   (Horvat et al., 1990;Visai and Vanoli, 1997;Derail et al., 1999;Eduardo et al., 2010;Sańchez et al., 2012). In addition, in the case of volatiles, some QTLs have been identified (Sańchez et al., 2014).
Not only the number of identified volatiles is shorter in plum than in apricots and peach, but also, they have been found in lower amounts (Goḿez et al., 1993). Particularly, while the concentrations of C 6 compounds (hexanal, (E)-2-hexenal, hexanol, (Z)-3-hexen-1-ol), and their esters are higher in plums than in apricots, apricots are richer in aromatic compounds ( Table 2). Hydrocarbons were more frequent in plums than in apricots (Goḿez et al., 1993).

Almond Kernels
Bitter almonds have important quantities (3-9%) of amygdalin, which releases hydrocyanic acid and benzaldehyde upon enzymatic hydrolysis (Wirthensohn et al., 2008) and are mainly used in the production of flavor extracts. In turn, sweet almond is consumed as a whole nut, blanched or peeled in the form of a healthy snack or ingredient (Yada et al., 2011). Polyphenols contribute to color and to the moderate astringency. The most predominant polyphenols are proanthocyanidins, hydrolysable tannins, and flavonoids. The amount of some representative polyphenols in different P. armeniaca cultivars is presented in Table 1.
Volatiles isolated from almond include more than 20 compounds such as alkylfuranones, n-alkanes, cyclopentadiene and aromatic compounds, such as benzaldehyde, methyl phenol, benzyl alcohol, and some alkylbenzenes. Among the dominant components is benzaldehyde, which has been reported as a predominant volatile of kernel oils from the botanical family Rosaceae and is associated with a marzipan-like flavor, benzyl alcohol, and methyl benzene ( Table 2). Octane, n-tridecane, ntetradecane, and hexadecane are the n-alkanes identified (Picuric-Jovanovic and Milovanovic, 1993).

PRE-AND POSTHARVEST TREATMENTS AFFECTING THE PHYTOCHEMICAL BIOSYNTHESIS AND COMPOSITION IN STONE FRUIT
Apart from the studies related to transcription factors involved in the regulation of secondary organic compounds in stone fruit, studies on peach, cherry, and apricot reveal that the composition and concentration of the different phytochemicals vary among the cultivars (Tomas- Barberan et al., 2001;Gil et al., 2002;Cantıń et al., 2009;Di Matteo et al., 2017). However, still very few studies have investigated the profiles and content of phenolic and volatiles in several cultivars (Di Vaio et al., 2008;Wang et al., 2009;Di Vaio et al., 2015;Di Matteo et al., 2017). Moreover, the molecular basis for the differences in phytochemical content among varieties has not been investigated in detail yet.
In addition, other factors, like the rootstock (Remorini et al., 2008), the water supply (Tavarini et al., 2011), the growing region, climatic conditions, plant density, nutrient management and agronomic practices (Dragovic-Uzelac et al., 2007;Buendıá et al., 2008;Álvarez-Fernańdez et al., 2011), the state of maturation and various factors in the postharvest stage, and handling (Gil et al., 2002;Dragovic-Uzelac et al., 2007;Tavarini et al., 2011;Scordino et al., 2012;Dabbou et al., 2016;Jia et al., 2009) influence fruit quality and the content of secondary organic compounds and thus consumers acceptance (Minas et al., 2018). Regarding the geographic growing regions, the effect of altitude in the skin pigmentation of peach fruit has been studied. Orchards from higher altitudes showed higher content of total phenols, flavonoids, carotenoids, and anthocyanins in comparison with those grown at lower altitudes (Karagiannis et al., 2016). The content of other metabolites such as quercetin-3-glucoside in apricot does not vary with the ripening stage ; however, it has been shown that fruit:leaf ratio has an impact on the phytochemical composition of the fruit. For example, fruit thinning, the adjustment of the fruit number of the tree, during pit hardening of apricot improved the phytochemical (total phenolics) content in some cultivars (Roussos et al., 2011). Other practices such as nitrogenous fertilization also affects the phenolic, flavonoid, and anthocyanin contents as it is the case of peach fruit (Vashisth et al., 2017). Depending on the fruit species and the phytochemical considered, the level of secondary organic metabolites might vary upon developmental and ripening stage. For example, in apricots, while the content of some phenolic compounds was constant during ripening, the amounts of others varied (Dragovic-Uzelac et al., 2007). In addition, the content of carotenoids increased during ripening in three different cultivars tested at two different locations (Dragovic-Uzelac et al., 2007). In consequence, the harvest time might affect the health-beneficial properties of the fruit. In this respect, research conducted in plums shows the evolution of the content of different secondary organic metabolites such as carotenoids, total phenolics, anthocyanins during development and ripening on tree of different cultivars (Dıáz-Mula et al., 2008;Jiang et al., 2019). Nevertheless, these works showed contradictory results i.e., while Dıáz-Mula et al.
(2008) described a decrease in phenolics over development of plum; Jiang et al. (2019) showed an increase of phenolic compounds. Later, Moscatello et al. (2019) studying the evolution of sugars, organic acids, and bioactive compounds over development, ripening and overripening, showed that metabolite content is influenced by dilution effects due to the expansion of the fruit. Thus, while phenolics exhibit a net decrease when expressed in terms of fresh or dry weight basis, the net content per fruit increases. Therefore, during plum fruit growth and development there is a net increase in the amount of these bioactive compounds due to synthesis.
On the other hand, the application of different postharvest abiotic stress in horticultural crops has proven to be a simple and effective technology to induce the accumulation of secondary metabolites with a wide range of applications in dietary supplements, functional foods, pharmaceutical markets, cosmetics and agrochemicals. Thus, the use and/or generation of wounds, ultraviolet light, modified atmospheres and phytohormones (ethylene and methyl jasmonate, etc.) in fresh fruits and vegetables induces the accumulation of antioxidants (Cisneros-Zevallos, 2003;Jacobo-Velaźquez and Cisneros-Zevallos, 2012). More recently, emerging technologies such as ultrasound have been used to generate abiotic stress to induce the accumulation of phenolic compounds (Jacobo-Velaźquez and Cisneros-Zevallos, 2018). Particularly in peaches, it was found that the effectiveness of the treatment with UV-B in the modulation of the concentration of phenolic compounds and the expression of the genes involved in the synthesis of phenylpropanoids was genotype-dependent (Scattino et al., 2014;Zhao et al., 2017). UV-A and UV-B treatment increased the content of flavonoids, ascorbate, and cyanidin-3-O-glucoside, and thus, it increased the antioxidant activity of treated peach (Sgherri et al., 2015). In line with these results, bagging also affects the accumulation of nutraceutic compounds. Yellow paper prevents the penetration of blue and UV light resulting in poor coloration of the skin . In contrast, white non-woven polypropylene allows the accumulation of anthocyanin in the skin.  showed increased expression of the TFs PpMYB 10.1, PpMYB 10.2, and PpMYB 10.3 and their partners PpbHLH3 and PpWD40-1 in peach covered with white non-woven polypropylene with respect to fruit covered with yellow paper. Enhanced expression of regulatory genes resulted in higher levels of PpCHS, PpDFR, and PpUFGT in peach bagged using non-woven polypropylene. UV-C treatment during the postharvest storage is also effective in inducing anthocyanin accumulation in cold stored peach (Zhou et al., 2020). In sweet cherries, UV-C applied to fruit after harvest and then cold stored also resulted in an increase in anthocyanins, flavonoids, and total phenolics (Michailidis et al., 2019). Temperature during the postharvest also affects total phenolics and anthocyanin levels. While cold storage at 1-2°C decreases total phenolic content (with neochlorogenic and p-coumaroylquinic acids been the most abundant) in four cultivars of sweet cherries harvested at ripe stage, storage at 15 ± 5°C increases them. In contrast, anthocyanin increased up to fivefold at both temperatures in both ripe and in partially ripe cherries (Goncalves et al., 2004). On the other hand, after 15 days of fruit storage at 1°C, Esti et al. (2002), also testing two cultivars harvested at commercial maturity indicated a considerable decrease in anthocyanin content. With respect to apricot, heat stress was effective to raise the antioxidant capacity (Madrau et al., 2009).
Preharvest and postharvest oxalic acid (OA) treatment has been successfully applied to stone fruits to increase their nutraceutical properties. In sweet cherries, treatments with OA during development (Martinez-Espla et al., 2014;Martinez-Espla et al., 2019) or during the postharvest followed by 50-day cold storage (Valero et al., 2011) were effective to induce total phenolics, anthocyanins, and antioxidant activity. In peach, OA application 15 days before harvest improved total flavonoids, phenolics, and antioxidant activity in cold stored peach for 28 days (Razavi and Hajiloub, 2016). In addition, in plum (Prunus salicina Lindl. 'Black Splendor'), OA applied as a foliar spray during fruit development successfully increased total phenolics and total antioxidant activity in harvested fruit and after cold storage (35 days at 2°C + 1 day at 20°C, Serrano et al., 2018).
Postharvest treatment on several Prunus fruit with methylcyclopropene (1-MCP), an inhibithor of ethylene perception (Sisler and Serek, 1997), provoked a delay of color development (Valero et al., 2005). Application of 1-MCP resulted in a negative effect on the expression of genes involved in the biosythentic pathway of carotenoids (Marty et al., 2005;Ziliotto et al., 2008) and anthocyanins (Niu et al., 2017) thus, supporting the regulatory role of ethylene in the accumulation of carotenoids and anthocyanins in this species.

FUTURE PERSPECTIVES FOR IMPROVING TYPE AND LEVELS OF SECONDARY PHYTOCHEMICALS IN STONE FRUIT
Despite the well-known beneficial effects of fruits and vegetables in human health, consumption is still low. Therefore, great efforts should be made to increase the level of health promoting compounds in plant foods by both molecular and non-molecular methods. During the last years, important advances with regard the regulation of secondary metabolism, together with the coordination with primary metabolism, have been achieved in model species such as arabidopsis and tomato. Modification of the expression of individual TFs modifies the levels of enzymes involved not only in secondary but also in primary metabolism suggesting supercoordinated gene expression networks between primary and secondary metabolisms (Aharoni and Galili, 2011). In this respect, it has been proposed that the manipulation of primary metabolism (source of precursors) is a promissory strategy to alter secondary metabolite content (Pott et al., 2019).
In stone fruit, even though in the recent years there has been an increase in genetic (genetic linkage maps and markers associated to quality traits) and omics (genome sequences, transcriptomes, metabolomes, proteomes and volatilomes) resources (Aranzana et al., 2019), there is still limited knowledge about the main factors regulating the accumulation of secondary organic metabolites. Upcoming research of pre-and posthavrest treatements on phytochemical composition should also consider the differences in development and ripening stages of the fruit. More studies should be performed in the future because, as stated in the present review, there is large evidence that stone fruits are rich in secondary organic metabolites, and thus, they may become biofactories of health promoting compounds. The manipulation of primary metabolism to alter secondary metabolite content (Pott et al., 2019) is also a strategy to be considered in stone fruits. Besides, several studies have highlighted the importance of epigenetic influence in plant ontogenesis, flowering time, heterosis, and fruit ripening process in other species. Much of the information regarding genetic control and epigenetic regulation has been obtained in tomato. The main actors (TF) involved in the transition from fruit growth to ripening have been identified (Giovannoni, 2007), and epigenetic regulation of the targets of these master regulators has also been described in tomato (Giovannoni et al., 2017). Regarding postharvest, epigenetic regulation of the senescence process has been explored in tomato, strawberry, and citrus (Farinati et al., 2017). In comparison, in stone fruits information is scarce, but it is starting to emerge (Fresnedo-Ramıŕez et al., 2017;Ma et al., 2018). Future studies are really needed and will help in the elucidation of epigenomic dynamics and the epigenetic mechanisms in stone fruit, which may also control secondary organic metabolite production and its relationship with stress condition exposures.
Finally, apart from a deeper knowledge about the molecular mechanisms related to the regulation of the levels of secondary organic compounds in stone fruits, the phytochemical content of the large number of different stone fruit varieties should be deeply characterized. Besides, the molecular mechanisms underlying the differences in phytochemical contents among varieties of the same stone fruit species should be identified. These results could be used in breeding programs to enhance nutritional value of stone fruits, which may aid, along with improved pre-and postharvest handling strategies, in the enlargement of the health promoting compounds of stone fruit for consumers' benefits in the years to come.

AUTHOR CONTRIBUTIONS
All authors contributed to the article and approved the submitted version. However, MD and ML had a major role in the design and writing of the article.

FUNDING
ML and MD acknowledge funding from CONICET and ANPCYT.