Dendritic Bundles, Minicolumns, Columns, and Cortical Output Units

The search for the fundamental building block of the cerebral cortex has highlighted three structures, perpendicular to the cortical surface: (i) columns of neurons with radially invariant response properties, e.g., receptive field position, sensory modality, stimulus orientation or direction, frequency tuning etc., (ii) minicolumns of radially aligned cell bodies and (iii) bundles, constituted by the apical dendrites of pyramidal neurons with cell bodies in different layers. The latter were described in detail, and sometimes quantitatively, in several species and areas. It was recently suggested that the dendritic bundles consist of apical dendrites belonging to neurons projecting their axons to specific targets. We review the concept above and suggest that another structural and computational unit of cerebral cortex is the cortical output unit, i.e., an assembly of bundles of apical dendrites and their parent cell bodies including each of the outputs to distant cortical or subcortical structures, of a given cortical locus (area or part of an area). This somato-dendritic assembly receives inputs some of which are common to the whole assembly and determine its radially invariant response properties, others are specific to one or more dendritic bundles, and determine the specific response signature of neurons in the different cortical layers and projecting to different targets.

The serial section reconstructions of Massing and Fleischhauer (1973) revealed some complications in the topographical organization of dendrites within a bundle. Individual dendrites changed their neighborhood relations along a bundle; superficial dendrites could be added between the dendrites from deeper layers; and individual dendrites could bifurcate to neighboring bundles. Subsequent work, reviewed in Peters (1997) and Rockland and Ichinohe (2004) refined some of the concepts above and extended them to a number of different species (next section). In addition to the bundles organized around the apical dendrites of layer V neurons, separate bundles of layer VI dendrites were described (Sakai, 1985;Escobar et al., 1986). Although dendritic bundles are most easily seen in layers III and IV, with appropriate methods they can also be identified in layer II (Miyashita et al., 2009). In the visual cortex the mean spacing between modules was found to be 60 µm in the rat, 56 µm in the cat and 23 µm in the rhesus monkey (Peters, 1997). And the total number of bundles in the visual cortex was calculated to be 2.5 to 3.4 × 10 3 in the rat, 1.6 × 10 5 in the cat and 2.9 × 10 6 in the monkey. The physiological significance of the modules remained elusive, although their dimension would fit that of Mountcastle's (1997) minicolumns, and that of the orientation columns, at least in the monkey (see Section Functional Correlates of the Dendritic Bundles).
It was later found that myelinated axons are also organized in bundles; these bundles course close to those of the dendrites and at least some of them originate from neurons whose apical dendrites Dendritic bundles, minicolumns, columns, and cortical output units protein 2 (MAP2), a selective somato-dendritic marker, retrograde transport of lipophilic tracers and intracellular injection in slice preparations. Depending on the sensitivity and resolution of the technique, bundles can vary in the number and size of the constituent dendrites, and be complicated by the addition of oblique and basal dendrites. Indeed, the diameter and number of dendrites in a bundle can vary in different reports from the same author. This stresses the objective diffi culty of defi ning the limits of the bundle, which, depending also on tangential location and depth, can be more or less sharp. In several papers the distance between bundles is mentioned but not the statistical size of the sample, nor if corrections were introduced for the tissue shrinkage.
In our study (Vercelli et al., 2004), we intended to use the retrograde transport of lipophilic tracers, but because only a few dendrites are labeled from each site of tracer application we needed to defi ne strict criteria to include apical dendrites in a bundle. To this end we preliminarily quantifi ed aspects of dendritic bundles in the rat visual cortex, based on MAP2 immunostained material. To identify apical dendrites in tangential sections, we measured the size of apical dendrites in layer III in coronal sections, where they could be traced from the cell body and therefore could be distinguished from the oblique branches. Having obtained an average size of 1.1-1.44 µm (depending on age) for apical dendrites, we drew maps of apical dendrites in tangential, MAP2-immunoreacted sections through layer III.
We transformed these maps into sets of points, one for each dendrite, whose coordinates were used to (i) eliminate as outliers all dendrites which were further than the maximal nearest neighbor distance (NND); this was set at 5 or 6 µm (depending on age) since 90% of measured NNDs between two dendrites in the same bundle fell in the range of 1-5 or 1-6 µm (depending on age); (ii) generate Dirichlet tessellation/Voronoi polygons for apical dendrites, to obtain objective, quantifi able criteria to consider them clustered (Figure 1). Briefl y, a polygon was assigned to each point, corresponding to an apical dendrite, by joining the midpoints of the segments connecting the apical dendrite to its neighbors. High values (>64%) in the coeffi cient of variation for Voronoi polygons are suggestive of a clustered distribution of points, and this was the case for apical dendrites; (iii) in the next step, we assigned a point to each dendritic bundle, to generate Voronoi polygons to analyze their tangential spatial distribution. This procedure allowed quantifying density, NNDs, CV, average diameter, average center-tocenter distance, and number of dendrites/bundle. The coeffi cient of variation of Voronoi polygons for dendritic bundles was very low (<36%), thus indicating a regular spatial distribution. The same procedure was used at all ages considered, with consistent results. By comparing data obtained at different ages, we observed that dendrites display a moderate increase in diameter between P3 and P30. Between those ages there is also a small increase in diameter of the bundles which seems more related to the increased dendritic size than to the number of dendrites in a bundle. There is a consistent increase in the NNDs between bundles, and a parallel decrease in the density of dendrites and dendritic bundles, probably refl ecting the increase in the neuropil and glia.
This procedure produced smaller bundles than those observed by Peters and Kara (1987) in the same area and species, bearing 6-6.4 dendrites instead of 8, at a higher density and with a smaller are in a bundle (Peters and Sethares, 1996). This is a fi rst indication that neurons in a dendritic bundle might send their axons to the same target as it will be shown below.

DENDRITIC BUNDLES ARE PRESENT BOTH ACROSS PHYLOGENESIS AND ONTOGENESIS
In the cerebral cortex of mammals, dendritic bundles can be found across cortical areas, including area 17 (rat, Peters and Kara, 1987;cat, Peters and Yilmaz, 1993), somatosensory (rat, Peters and Walsh, 1972;mouse, White and Peters, 1993), motor (mouse, Lev and White, 1997;rabbit, Fleischhauer et al., 1972) and prelimbic (rat, Gabbott and Bacon, 1996) cortex, with quantitative features possibly refl ecting differences in the density of neurons (rat, Skoglund et al., 1996) or locale. For example, in the barrelfield of rodent somatosensory cortex, dendritic bundles are mostly located in the barrel walls and septa, avoiding hollows (mouse, Escobar et al., 1986).
The appearance of vertically oriented dendritic bundles seems to be closely related to the evolution of the mammalian neocortex as a multilayered structure. Dendritic bundles have been found in the cerebral cortex of different mammalian species, such as rodents (mouse, Detzer, 1976;Escobar et al., 1986;rat, Peters and Walsh, 1972;Winkelmann et al., 1975;Peters and Kara, 1987;Gabbott and Bacon, 1996), lagomorphs (rabbit, Fleischhauer et al., 1972;Schmolke and Viebahn, 1986;Schmolke, 1996), carnivores (cat, Fleischhauer, 1974;Ikeda et al., 1989;Peters and Yilmaz, 1993) and primates (Peters and Sethares, 1991), including humans (von Bonin and Mehler, 1971). In the opossum they were reported as unpublished data by Peters and Feldman (1973). In the lesser hedgehog tenrec, a mammal bearing one of the lowest neocorticalization indices, dendritic bundles can be found in all cortical areas as well, including paleocortex (entorhinal cortex) and archicortex (hippocampus) (Schmolke and Künzle, 1997). On the contrary, vertically arranged dendritic bundles are not found in the primitive cortex of turtles (Schmolke and Künzle, 1997).
Dendritic bundles are described as early as E16, when the cortical plate forms in the rat parietal cortex (Hirst et al., 1991) and throughout development (Peters and Feldman, 1973;Schmolke, 1989;Hirst et al., 1991). According to Peters and Feldman (1973), in Nissl preparations, the cell bodies tend to align in vertical rows separated from each other by bundles (clusters) of vertically oriented processes, i.e., developing dendrites in the upper layers and axons, in lower layers. This is particularly evident at the top of the plate, where the lateral separation is wider than more deeply. The arrangement in vertical clusters is apparent at E19-E21. Vertical dendritic bundles (clusters) are masked in the mature cortex by the extensive proliferation of the neuropile.
The dendritic bundling, from neurons in layer II, was enhanced in the barrelfi eld by the over expression of the neurotrophin NT-2, an effect paralleled by an increased dendritic branching in layer I (Miyashita et al., 2009).

METHODOLOGICAL AND DIMENSIONAL ISSUES
The defi nition of a dendritic bundle raises a number of methodological issues. The histological methods used include material prepared for electron microscopy and viewed in thin or semithin sections, the Golgi technique, staining with microtubule associated geniculate nucleus, (v) the striatum with the other dye. Moreover, in some animals we labeled corticopontine and corticostriatal neurons with the two dyes, respectively. Lipophilic dyes such as DiI and DiA are used to trace connections in vitro in fi xed material thus allowing a precise placement of the dye even in deep subcortical targets and in small brains. On the other hand, these dyes hardly diffuse in adult material, so we were obliged to use in vivo tracing with FE and FR in adult rats. To maximize the chance of detecting double labeling in a bundle we analyzed regions with the highest density of neurons labeled with each tracer.
Compared with MAP2-immunostaining, retrograde tracing visualizes only a small number of neurons projecting to a target, proportional to the size of the crystal of lipophilic dyes or to the injection size for FE and FR. Also, retrograde tracing is not as efficient as MAP2 immunostaining in visualizing apical dendrites. Therefore, it was likely that not all the apical dendrites in the same bundle could be labeled retrogradely, implying that they could be at higher NND than in MAP2-immunostained sections. For this reason, we used the maximal diameter of MAP2-immunostained bundles (28 µm) as cut-off distance to consider apical dendrites of neurons retrogradely labeled from different structures as participating in the same bundle.
Apical dendrites of neurons projecting to either corpus callosum, ipsilateral cortex or striatum as well as those projecting to pons and striatum were at a NND below this value indicating that they belonged to the same bundle. Of the 433 bundles, 30% containing apical dendrites of pyramidal neurons projecting to either ipsilateral or contralateral cortex contained both types of dendrites (Figures 2A,C, and 3), while 34% contained only dendrites of neurons projecting to ipsilateral cortex and 30% neurons projecting to contralateral cortex. In contrast, the distance between apical dendrites of neurons projecting to cortical targets, and of those projecting to subcortical targets, i.e., either superior colliculus, lateral geniculate or pons was never less than 30 µm, and peaked at 60 and 110 µm suggesting that they belonged to different bundles. Of 551 bundles in brains in which callosally projecting and corticocollicular neurons were labeled, 81 and 19% projected to either target, but none contained dendrites from both types of neurons (Figures 2B,D, and 3).
Our results are summarized in Figure 4. They strongly support the concept that dendritic bundles are target-specifi c. Moreover, the composition of dendritic bundles does not seem to depend on the age of the animal and is already established at P3.

FUNCTIONAL CORRELATE OF THE DENDRITIC BUNDLES: THE CORTICAL OUTPUT UNIT HYPOTHESIS
The search for the functional correlate of the dendritic bundles is of fundamental importance and has been the object of many speculations. One important preliminary question is that of the relation between the columns of radially aligned cell bodies, stained for example with the Nissl method, which have become known as minicolumns (Buxoeveden and Casanova, 2002), and the dendritic bundles. Dendritic bundles and minicolumns of cell bodies are closely related although not identical entities. The distance and the transverse diameter of both is roughly the same, i.e., about 50 µm in most areas and species. In reconstructions from a limited series of tangential sections the dendritic bundles can be mapped onto NND. However, the two sets of results are only partially comparable, since (i) we considered dendrites of smaller size (1.1 instead of 2 µm), (ii) we drew our maps in layer III instead of layer IV, (iii) we considered bundles consisting of at least two apical dendrites instead of three, and (iv) we did not consider layer V apical dendrites to be essential in forming a bundle. Interestingly, our data are very similar to those obtained by other authors in area 17 and 18 of the monkey (Peters and Sethares, 1996;Peters et al., 1997), and in motor and somatosensory cortex of mice (Lev and White, 1997).

SHIFTING CONCEPTS: DENDRITIC BUNDLES AS ASSEMBLIES OF TARGET-DEFINED NEURONS
The meaning of the dendritic bundles underwent a potential fundamental shift with the work of Lev and White (1997). They showed that, in the mouse area MsI, following injection of horseradish peroxidase in the contralateral hemisphere, all dendrites in a labeled bundle belonged to callosally projecting neurons, thus suggesting that dendritic bundles are target-specifi c. The concept that different dendritic bundles may comprise neurons with different outputs is in keeping with the observed heterogeneity of dendritic bundles: bundles differ in the size of the constituent dendrites and that not all apical dendrites from layer V enter into the composition of dendritic bundles, as stressed by Rockland and Ichinohe (2004).
Because in the course of development some callosally projecting neurons lose their callosal axon and establish connections in the ipsilateral hemisphere (Innocenti et al., 1986;Clarke and Innocenti, 1990;reviewed in Innocenti and Price, 2005) it seemed likely that callosally and ipsilaterally projecting neurons would participate in the same dendritic bundle. Alternatively, the composition of the dendritic bundles might change in development.
Therefore we decided to identify, at different ages, pyramidal neurons in the visual cortex of the rat projecting to different targets by retrograde axonal tracers (Vercelli et al., 2004). We used DiI and DiA as tracers in the developing animal, and fl uoro-emerald (FE) and fl uoro-ruby (FR) in adults, labeling callosally projecting neurons with one dye and neurons projecting either to (i) the ipsilateral cortex, (ii) the superior colliculus, (iii) the pons, (iv) the lateral suggests that this is not the case, and that, instead, the bundles are formed both by dendrites diverging from neurons to more than one bundle as well as by convergence of dendrites whose parent cell bodies lie in separate minicolumns. The dendritic bundles, therefore, appear to select neuronal subsets within one minicolumn of cell bodies and integrate them with those of neighboring minicolumns. the underlying cell bodies of the minicolumn (Peters and Walsh, 1972;Peters and Kara, 1987). This shows that already in layer V and more so in layer III the dendritic bundles lie between the columns of cell bodies (see Figures 3, 7 and 11B in Peters and Kara, 1987). Indeed, as schematized in Figure 5A, cell bodies of neurons in a minicolumn can be seen to orient obliquely to engage their apical dendrite into the neighboring dendritic bundles already in layer V and more so in layer III (Peters and Walsh, 1972;Peters and Kara, 1987;Gabbott, 2003). Neurons in a minicolumn can send their apical dendrite to different bundles (Peters and Kara, 1987), some of them through bifurcating apical dendrites (Massing and Fleischhauer, 1973;Fleischhauer and Detzer, 1975), and neurons in separate minicolumns can send their dendrites to the same bundle (see Figure 3 in Peters and Kara, 1987). The progressive addition of dendrites to the bundle from depth to surface in cortex ("like onions held by their stem"; Peters and Kara, 1987) also indicates that the bundles collect dendrites from more than one minicolumn of cell bodies.
The evidence above is particularly relevant in view of our observation that the dendritic bundles consist of neurons with specifi c targets. At least nine types of target-specifi c bundles seem to exist (Figure 4) each of which, based on the MAP2 analysis contains 2-70 dendrites (6.5-8 on average, Peters and Kara, 1987;Vercelli et al., 2004). Since the minicolumns contain 80-100 cell bodies, out of which probably 60-80 are pyramidal neurons (Buxoeveden and Casanova, 2002) it would be in theory possible that one minicolumn gives rise to a whole set of 9, target specifi c bundles. However, the evidence quoted above   In (A,B), callosally projecting (DiA, yellow-green) and corticocollicular (DiI, orange-red) neurons form separate bundles in the visual cortex of P3 and P9 rats. (A) Bundles are indicated by thick arrows, whereas the thin arrow points to a callosally projecting neuron whose apical dendrite, at higher magnifi cation, was found to be separated from the corticocollicular ones on the z-axis. (B) The thin arrow points to a corticocollicular dendritic bundle, and the thick one to a callosally projecting bundle. (C) A bundle comprising apical dendrites of callosally projecting (DiI, orange-red) and corticostriatal neurons (DiA, yellow-green), in a P3 rat. (D,E) callosally projecting (DiI and fl uoro-ruby, respectively, orange-red) and ipsilaterally projecting corticocortical (DiA and fl uoro-emerald, respectively, yellow-green) neurons in the visual cortex of P5 and adult rats establish common bundles (thick arrows). (F) Callosally projecting (DiA, yellow-green) and corticogeniculate (DiI, orange-red) neurons in the visual cortex of P8 rats. Scale bars, 50 µm (from Vercelli et al., 2004).
The search for the functional correlate of the dendritic bundles is constrained by the following evidence.
From the time of their discovery, the dimension of the dendritic bundles, about 50 µm (or less in the visual cortex of the monkey; see above) excluded that they might correspond to the large cortical columns, i.e., Hubel and Wiesel's ocular dominance columns or Mountcastle's receptive-fi eld and tactile modality columns which average about 500 µm in diameter (reviewed in Mountcastle, 1997). The possibility was raised that they might correspond to narrower assemblies of neurons with radially invariant activation/response properties such as orientation (and direction) of stimulus motion, in the visual, motor and auditory areas.
A microelectrode driven into the cortex perpendicularly to the cortical surface will, as a rule, record activity from neurons at 50-100 µm from its tip, therefore collecting responses of neurons which belong to the same minicolumn of cell bodies as well as to different minicolumns. Even when a microelectrode records simultaneously from nearby neurons, these very often share some response properties but differ for others (Creutzfeldt et al., 1974;Molotchnikoff et al., 2007;Sato et al., 2007;Dahl et al., 2009), suggesting that they receive a common input, but each of them also distinct ones. Nearby neurons have largely overlapping basal dendritic arbors which could receive common input but their apical dendrites can segregate to different bundles (Krieger et al., 2007) which might receive distinct inputs.
Although some response properties of cortical neurons are radially invariant, and therefore must be determined by an input which, directly or indirectly, reaches neurons in different layers, many are not. In particular, receptive fi eld structure and size in the visual cortex vary with cortical depth (Hubel and Wiesel, 1962;Gilbert, 1977) and are different in neurons projecting to different targets (Swadlow and Weyand, 1987;Niida et al., 1997). This could be easily achieved by a differential distribution of inputs to dendritic bundles containing different sets of output neurons.
Finally, the evidence that the radially invariant properties of cortical neurons are the result of intracolumnar computation is lacking. In fact at least one of the response properties used to defi ne a cortical column, i.e., orientation specifi city is preserved in spite of the deletion of the deep cortical layers V and VI (Innocenti et al., 1993). Orientation specifi city most probably originates from spatially organized excitatory input reaching several output neurons, possibly sharpened by inhibition (Hubel and Wiesel, 1962;Wörgötter and Koch, 1991;Crook et al., 1998;Ferster and Miller, 2000).
We propose that neurons in the different layers of one minicolumn, projecting to different targets, send their apical dendrites to separate dendritic bundles where they join apical dendrites of neurons from neighboring minicolumns, projecting to the same target or combination of targets. An assembly of apical dendritic bundles, which includes each of the outputs to distant cortical or subcortical structures, of a given cortical locale (area or part of an area), their parent somata and basal dendrites, and the portion of the neuropil which pertains to them, constitutes a cortical output unit (COU). We assume that the COU receives excitatory and inhibitory afferents some of which common to all its constituent neurons in particular those reaching the dendritic tufts in layer I or the largely overlapping basal dendrites (Krieger et al., 2007). Other inputs are probably specifi c for a given bundle and therefore reach FIGURE 5 | (A) Topographical relations between minicolumns and dendritic bundles summarizing information from Massing and Fleischhauer (1973), Peters and Kara (1987; inspired by their Figure 3) and Vercelli et al. (2004). Dendrites are shown as "clusters" as they appear in transverse sections; the cell body outlines belong to neurons in minicolumns adjacent to the bundles; they are in different layers but are projected on the plane of the dendrites. The colors refer to specifi c targets or combinations of targets for each dendritic bundle and their parent somata (see Figure 4). (B) Model of a COU in layer III of V1 with bundles of apical dendrites of neurons projecting to four different targets (colors).The COU is defi ned as an assembly of apical dendritic bundles, large enough to include each of the outputs to distant cortical or subcortical structures, of a given cortical locale (area or part of an area), their parent somata and basal dendrites, and the portion of the neuropil which pertains to them. It receives a common input to the apical and basal (not shown) dendrites as well as specifi c inputs to the different dendritic bundles. The distance between the dendritic bundles and between minicolumns 30-70 µm is similar and corresponds to the minimal transverse diameter of an orientation column in the visual cortex, estimated electrophysiologically. at least the pyramidal neurons, to their connectivity and response properties although these are further refi ned by activity. The evidence for lateral dispersion leading to clonal intermingling among radially aligned neurons (Torii et al., 2009) complicates this perspective. However, a more direct link between cortical morphology, function and development, applies to dendritic bundles. Newly generated neurons reach their fi nal position in cortex by ascending with their apical dendrites in close contact to the radial glia (Rakic, 1988). It would not be surprising if neurons which select the same radial glia processes because of some genetically determined membrane signaling properties, would also, in adulthood, participate in the same dendritic bundle whereby receiving the same input, while with their axons they participate in the same axonal bundle, proceeding to specifi c pathways and targets.

PERSPECTIVES
The hypothesis that assemblies of dendritic bundles, and minicolumns of cell bodies constitute COUs, and that these in turn might represent computational building blocks of neocortex requires several structural and physiological refi nements. The retrograde tracing experiments mentioned in this paper could not adequately describe the frequency and spatial arrangements of the different target-specifi c dendritic bundles and the related minicolumns. Therefore, the model shown in Figure 5B is tentative and is meant to illustrate a concept the details of which are still fuzzy. Moreover, the arrangements might be area-specifi c, and might differ e.g. between the primary areas and/or between primary and secondary-association areas. The type and origin of the inputs to the different components of the COU needs specifying. The relations between COUs and the classical cortical macro-columns needs clarifying as does the clonal origin and the genetic make up of the neurons participating in the bundles.

ACKNOWLEDGMENT
Supported by Compagnia di San Paolo grant to Alessandro Vercelli. specifi c sets of output neurons in the same or in different layers, determining their specifi c response properties (above). The dendritic bundling seems to offer two important advantages. It might minimize the length of the axonal arbors which contact specifi c neuronal classes and, in development it might simplify the axonal search and recognition of targets.
This view is summarized in the model shown in Figure 5B. The properties of the COU, match several aspects of Mountcastle (1997) defi nition of a cortical column: "A cortical column is a complex processing and distributing unit that links a number of inputs to a number of outputs via overlapping internal processing chains. Cortical efferent neurons with different extrinsic targets are partially segregated; those of layers II/III project to other cortical areas, those of layers V/VI to subcortical structures. This suggests that the intracolumnar processing operations leading to those different output channels may differ in some fundamental way".
Unfortunately, the internal connectivity of the COU is incompletely known. Unlike what might have been expected, neurons of the same bundle are not more interconnected than neurons of different bundles (Krieger et al., 2007). Instead, there are preferential connections between clonally related neurons, presumably belonging to the same minicolumn (Yu et al., 2009). There are also preferential connections between certain output neurons, interestingly between corticocortical and cortico-tectal neurons, whose apical dendrites, as we have described, lie in separate dendritic bundles (mice, Brown and Hestrin, 2009).

MINICOLUMNS OF CELL BODIES, DENDRITIC BUNDLES, CLONES AND GENES
One strong appeal of the hypothesis that minicolumns might be the fundamental computational unit in the cerebral cortex is that it appears to link cortical morphology and function to development, since the minicolumns of cell bodies seemed to be the likely counterpart of Rakic's ontogenetic radial units (Rakic, 1988; discussed in Buxoeveden and Casanova, 2002). Thus, there might be a direct path from the genetic make-up of clonally related neurons,