AUTHOR=Akkerdaas J. H. , Cianferoni A. , Islamovic E. , Kough J. , Ladics G. S. , McClain S. , Poulsen L. K. , Silvanovich A. , Pereira Mouriès L. , van Ree R. TITLE=Impact of Food Matrices on Digestibility of Allergens and Poorly Allergenic Homologs JOURNAL=Frontiers in Allergy VOLUME=Volume 3 - 2022 YEAR=2022 URL=https://www.frontiersin.org/journals/allergy/articles/10.3389/falgy.2022.909410 DOI=10.3389/falgy.2022.909410 ISSN=2673-6101 ABSTRACT=Background Protease resistance is considered a risk factor for allergenicity of proteins, although the correlation is low. Susceptibility of proteins to pepsin is commonly tested with purified protein in solution. Objective Our aim was to evaluate the impact of experimental and endogenous food matrices on protease susceptibility of homologous protein pairs with different degrees of allergenicity. Methods Porcine and shrimp tropomyosin were subjected to sequential exposure to amylase, pepsin and pancreatin in their respective endogenous matrix (pork tenderloin / boiled shrimp) and in three different experimental matrices (dessert mousse, soy milk and chocolate bar). Digestion was monitored by immunoblotting using tropomyosin specific antibodies. Recombinant peach and strawberry lipid transfer protein were biotinylated, spiked into both peach and strawberry fruit pulp and were subjected to the same sequential digestion protocol. Digestion was monitored by immunoblotting using streptavidin for detection. Results Chocolate bar, and to a lesser extent soy milk, had a clear protective effect against pepsin digestion of porcine tropomyosin and to a lesser extent of shrimp tropomyosin. Increased resistance was associated with increased protein content. Spiking experiments with bovine serum albumin confirmed the protective effect of a protein-rich matrix. The two tropomyosins were both highly resistant to pepsin in their protein-rich and lean native food matrix. Pancreatin digestion remained rapid and complete, independent of the matrix. Fat-rich environment did not transfer protection against pepsin digestion. Spiking of recombinant peach and strawberry lipid transfer proteins into peach and strawberry pulp did not reveal any differential protective effect that could explain differences in allergenicity of both fruits. Conclusions Protein-rich food matrices delay pepsin digestion by saturating the protease. This effect is most apparent for proteins that are highly pepsin susceptible in solution. Inclusion of food matrices does not help understanding why some proteins are primary sensitizers while homologues are poor allergens. Although for induction of symptoms in food allergic patients (elicitation), a protein rich food matrix may contribute to increased risk, our results indicate that inclusion of food matrices in the weight-of-evidence approach for estimating the potential risks of novel proteins to become allergens (sensitization), is most likely of very limited value.