Frontiers in Bioinformatics | New and Recent Articles https://www.frontiersin.org/journals/bioinformatics RSS Feed for Frontiers in Bioinformatics | New and Recent Articles en-us Frontiers Feed Generator,version:1 2026-08-13T05:10:28.457+00:00 60 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1926188 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1926188 <![CDATA[RLNSF-MDA: reliability-guided graph-regularized matrix factorization for immune-related miRNA–disease association prediction]]> 2026-08-13T00:00:00Z Original Research Xin LiYaoyu LiuMing Xu https://www.frontiersin.org/articles/10.3389/fbinf.2026.1833416 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1833416 <![CDATA[Single cell mapping of B and T cell dynamics in breast cancer lymph node metastasis]]> 2026-08-12T00:00:00Z Original Research Sajid KhanSabahat JamilMuhammad HamzaZarlish AttiqueSuping Zhang https://www.frontiersin.org/articles/10.3389/fbinf.2026.1856011 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1856011 <![CDATA[Detecting poliovirus sequences in the sequence read archive database using bioinformatics tools]]> 2026-08-12T00:00:00Z Brief Research Report Katie FarrellKevin TangMelchizedek MashikuDawit AbayJoseph LongoEdward RamosGabriel Leventhal-DouglasMargaret RohrbaughPaul ChenowethCara C. BurnsKun Zhao https://www.frontiersin.org/articles/10.3389/fbinf.2026.1871436 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1871436 <![CDATA[A microbe–drug association prediction model based on graph attention networks and rotation forest]]> 2026-08-12T00:00:00Z Original Research Jing LiJuncai LiQijia ChenZhong WangXianzhi LiuMingmin LiangJunzhuang WangHongyuan DingBin ZengLei Wang https://www.frontiersin.org/articles/10.3389/fbinf.2026.1903746 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1903746 <![CDATA[Agentic AI for trustworthy synthetic microbial genomics: a perspective on generation, validation, and governance]]> 2026-08-12T00:00:00Z Perspective Fahim Sufi https://www.frontiersin.org/articles/10.3389/fbinf.2026.1896572 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1896572 <![CDATA[rMAP-Candida: a modular Dockerized WDL/Cromwell workflow for reproducible Candida species typing, assembly-contiguity assessment, antifungal-resistance marker screening, and phylogenomic surveillance]]> 2026-08-12T00:00:00Z Technology and Code Gerald MboowaIvan SserwaddaStephen KanyereziBenson R. KidenyaJonani BwambaleBenson Musinguzi https://www.frontiersin.org/articles/10.3389/fbinf.2026.1953979 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1953979 <![CDATA[Correction: Transcriptome-informed metabolic modeling reveals astrocyte-specific vulnerabilities in mild cognitive impairment and Alzheimer’s disease progression]]> 2026-08-11T00:00:00Z Correction Andrea Angarita-RodríguezViviana Vargas-LópezAndrés PinzónAdrián Sandoval-HernandezKai KangLeping LiJason PapinPedro Puentes-RozoAndrés Felipe AristizábalJanneth González https://www.frontiersin.org/articles/10.3389/fbinf.2026.1873262 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1873262 <![CDATA[Design and in silico evaluation of Thiazole–Isoxazole hybrids as PPARγ-Targeted antidiabetic agents]]> 2026-08-11T00:00:00Z Original Research Abhirami PVGupta Dheeraj RajeshN. V. L. Sirisha MulukuriRanjitha ANiyas RehmanShiv Basant KumarDileep KumarPankaj Kumar https://www.frontiersin.org/articles/10.3389/fbinf.2026.1909327 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1909327 <![CDATA[PUDU (pipeline for universal diversity unveiling): an accessible end-to-end workflow for taxonomic profiling and ecological visualization of environmental microbiomes across amplicon, shotgun, and long-read sequencing]]> 2026-08-11T00:00:00Z Technology and Code Alejandro Medaglia-MataPablo Rojas-RodríguezVojtěch BystrýRossy Guillén-WatsonOlman Gómez-EspinozaKattia Núñez-Montero https://www.frontiersin.org/articles/10.3389/fbinf.2026.1906036 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1906036 <![CDATA[LungMicroHostR: an R package for integrated host–microbiome analysis of bronchoalveolar lavage fluid metagenomic sequencing data]]> 2026-08-10T00:00:00Z Original Research Nan LiJing HuWanning TongChengdong LiuYun DingNing LiZhigang Cai https://www.frontiersin.org/articles/10.3389/fbinf.2026.1893303 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1893303 <![CDATA[Multiple binding modes underlie Cannabis sativa cannabinoids recognition by peroxisome proliferator-activated receptor gamma]]> 2026-08-10T00:00:00Z Original Research N. R. Carina AlvesJustina MirandaLautaro D. Alvarez https://www.frontiersin.org/articles/10.3389/fbinf.2026.1911554 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1911554 <![CDATA[Integrated analysis of enzymes, mRNAs, and miRNAs provides insight into the regulatory potential of extracellular vesicles in recipient cell glucose metabolism]]> 2026-08-07T00:00:00Z Original Research Namita N. KashyapSharath Mohan BhatPadmanabha Udupa E. G.Kavitha S. ShettigarVinutha R. BhatDinesh Upadhya https://www.frontiersin.org/articles/10.3389/fbinf.2026.1887419 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1887419 <![CDATA[AI-enhanced virtual screening identifies a potent small-molecule modulator of ClC-3 for cervical cancer drug discovery]]> 2026-08-07T00:00:00Z Original Research Chao LiuChongxing Ji https://www.frontiersin.org/articles/10.3389/fbinf.2026.1832826 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1832826 <![CDATA[Spatial transcriptomics reveal heterogeneous cell‒cell interactions among brain regions in cuprizone model consistent with multiple sclerosis lesions]]> 2026-08-06T00:00:00Z Original Research Hui-Hsin TsaiSarbottam PiyaJing WangJing ZhuWenxing HuAndrew R. GehrkeShaolong CaoAmanda J. GuiseSu Jing ChanMark SheehanJenhwa ChuZhengyu OuyangMatthew RyalsMichelle LeeWanli WangEdward ZhaoPatrick CullenRavi ChallaEric MarshallWanyong ZengYea Jin Kaeser-WooChris EhrenfelsLuke JandreskiHelen McLaughlinThomas M. CarlileJake GagnonTaylor L. ReynoldsMingyao LiKejie LiBaohong Zhang https://www.frontiersin.org/articles/10.3389/fbinf.2026.1827877 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1827877 <![CDATA[SiaRNA: a siamese neural network with bidirectional cross-attention for pairwise siRNA-mRNA efficacy prediction]]> 2026-08-05T00:00:00Z Original Research Vaishnavi SapireddyRajkumar NathiVenkata Harshit MeruvaVarun Raju NannapurajuBhargava Chary BasangariVani Kondaparthi https://www.frontiersin.org/articles/10.3389/fbinf.2026.1894439 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1894439 <![CDATA[Decoding the hypoxic injury landscape and hypoxic risk model construction in diabetic kidney disease: a multi-omics study]]> 2026-08-05T00:00:00Z Original Research Li JiangChien ChiehHaojun ZhangTingting ZhaoXiai Wu https://www.frontiersin.org/articles/10.3389/fbinf.2026.1883130 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1883130 <![CDATA[MultiCausGRN: directed prior-guided graph attention model for multi-omics gene regulatory network inference]]> 2026-08-04T00:00:00Z Original Research Noor Jamal AlkhateebMamoun Awad https://www.frontiersin.org/articles/10.3389/fbinf.2026.1882476 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1882476 <![CDATA[LNMGAT: a laplacian regularized pseudo-negative mining graph attention network for robust drug–target interaction prediction under multi-scenario cold-start settings]]> 2026-07-31T00:00:00Z Original Research Shuai GuoWeichi LiuJie ZouTao BanGaifang Dong https://www.frontiersin.org/articles/10.3389/fbinf.2026.1821527 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1821527 <![CDATA[Molecular docking and dynamics simulation studies uncover the host–pathogen protein–protein interactions in soybean (Glycine max (L.) Merr.) and Groundnut bud necrosis virus: first report]]> 2026-07-31T00:00:00Z Original Research Rayees Ahmad BhatAyyagari RamlalAmooru HarikaAshutosh SharmaAmbika RajendranIten M. FawzySreeramanan SubramaniamDhandapani RajuS. K. LalSonu KrishankumarShyam S. Kurup https://www.frontiersin.org/articles/10.3389/fbinf.2026.1902380 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1902380 <![CDATA[A linked independent component analysis framework for characterizing site-effect patterns in multi-site structural and functional MRI]]> 2026-07-29T00:00:00Z Original Research Huashuai XuYuge XingWeiya Guo