Frontiers in Bioinformatics | New and Recent Articles https://www.frontiersin.org/journals/bioinformatics RSS Feed for Frontiers in Bioinformatics | New and Recent Articles en-us Frontiers Feed Generator,version:1 2026-04-09T17:49:05.486+00:00 60 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1719535 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1719535 <![CDATA[Characterizing miRNA editing patterns in 5 types of cells using single-cell small RNA sequencing data]]> 2026-04-09T00:00:00Z Original Research Chunyi MaoHao GuoWenping XieYue XuHongjia ZhangKang LuoJun YangYun Zheng https://www.frontiersin.org/articles/10.3389/fbinf.2026.1677453 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1677453 <![CDATA[Bioinformatics strategies and biomarker refinement using high-throughput transcriptome data in transplantation]]> 2026-04-08T00:00:00Z Original Research Oliver P. GüntherKaren R. SherwoodFranz FenningerRobert F. BalshawAndreas SchererZsuzsanna HollanderRaymond NgJanet Wilson-McManusW. Robert McMasterBruce M. McManusPaul A. Keown https://www.frontiersin.org/articles/10.3389/fbinf.2026.1766384 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1766384 <![CDATA[Transcriptomics-driven identification of CDK1 as a central oncogenic driver in TNBC: an in silico structural modeling and MD simulation approach]]> 2026-04-08T00:00:00Z Original Research Uma ChaudharySidharth Kumar Nanda KumarMagesh RamaswamyMythili Asaithambi https://www.frontiersin.org/articles/10.3389/fbinf.2026.1755843 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1755843 <![CDATA[Artificial intelligence in drug discovery from advanced molecular representation to pipeline applications]]> 2026-04-07T00:00:00Z Review Xiaoyu ZhouWeijing Tao https://www.frontiersin.org/articles/10.3389/fbinf.2026.1776111 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1776111 <![CDATA[Unveiling the thioredoxin fold: a systematic review and bioinformatic analysis of protein disulfide isomerase and Dsb family proteins]]> 2026-04-07T00:00:00Z Systematic Review Daniel Cuevas OrtizKaren WernerMaria Fernanda Frias MayoPablo A. Cárdenas ArredondoGabriela F. García ManzanoCristina Revilla-MonsalveHéctor RetanaNelly F. Altamirano-BustamanteMyriam M. Altamirano-Bustamante https://www.frontiersin.org/articles/10.3389/fbinf.2026.1751616 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1751616 <![CDATA[Development and validation of a pipeline for the systematic search for new HLA alleles in WGS data]]> 2026-04-07T00:00:00Z Original Research Eugene AlbertAndrei DeviatkinDaria SmirnovaMary WoroncowGauhar ZobkovaOlga MityaevaAnna SmirnovaViktor BogdanovPavel Volchkov https://www.frontiersin.org/articles/10.3389/fbinf.2026.1767362 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1767362 <![CDATA[Machine learning approaches for biomarker discovery using single-cell RNA sequencing]]> 2026-04-02T00:00:00Z Review Gabriel DewaC. Mee Ling MunierSara BallouzRaymond Louie https://www.frontiersin.org/articles/10.3389/fbinf.2026.1796216 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1796216 <![CDATA[Investigating the molecular mechanisms of the “Tianma-Gouteng” herb pair in treating Parkinson’s disease: a bioinformatics approach and density functional theory with molecular dynamics simulations validation]]> 2026-04-01T00:00:00Z Original Research Liping ZhouChenyang FeiQuanxia Liu https://www.frontiersin.org/articles/10.3389/fbinf.2026.1771574 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1771574 <![CDATA[Automated deep learning based detection of cellular deposits on clinically used ECMO membrane lungs]]> 2026-04-01T00:00:00Z Original Research Daniel PointnerMichael KranzMaria Stella WagnerMoritz HausKarla LehleLars Krenkel https://www.frontiersin.org/articles/10.3389/fbinf.2026.1777858 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1777858 <![CDATA[Targeting KasA: isosakuranetin derivatives as promising scaffolds for novel anti-tuberculosis agents against drug-resistant Mycobacterium tuberculosis]]> 2026-03-31T00:00:00Z Original Research B. AngithaT. AmrithaRadul R. DevRajesh RajuC. V. UmeshJ. Abhithaj https://www.frontiersin.org/articles/10.3389/fbinf.2026.1822029 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1822029 <![CDATA[Integrated transcriptomics and machine learning reveal diagnostic biomarkers and immune–stromal remodeling in ischemic heart failure]]> 2026-03-31T00:00:00Z Original Research Yang SunYu ChangYezhi FengBinghui SongYanan Zhou https://www.frontiersin.org/articles/10.3389/fbinf.2026.1756459 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1756459 <![CDATA[molIEreVIS: exploring and interpreting the evidence behind drug repurposing predictions]]> 2026-03-30T00:00:00Z Original Research Amal AlnouriAndreas HinterreiterChristian SteinparzLabinot BajraktariSebastian Burgstaller-MuehlbacherMarkus BauerGregorio Alanis-LobatoMarc Streit https://www.frontiersin.org/articles/10.3389/fbinf.2026.1719700 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1719700 <![CDATA[Boolean network and meshless simulations for the comparison of transport and reaction mechanisms arising in one-short tri-exponential and uniform infusion electrochemotherapeutic treatments]]> 2026-03-25T00:00:00Z Original Research Fabián Mauricio Vélez SalazarIván David Patiño ArcilaIsmael E. Rivera MadridMarlon Rincón Fulla https://www.frontiersin.org/articles/10.3389/fbinf.2026.1793862 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1793862 <![CDATA[Human-associated NDM-5-producing multidrug-resistant Escherichia coli detected in retail beef and pork in Hungary, 2021]]> 2026-03-24T00:00:00Z Original Research Mirena IvanovaJoana MourãoJudit SzarvasElif S. TosunNiamh Lacy-RobertsNatasia Rebekka ThornvalZita ZáborckiSzilárd JánosiRaquel Garcia-FierroPierre-Alexandre BeloeilErnesto LiebanaBeatriz GuerraRene S. HendriksenJette S. Kjeldgaard https://www.frontiersin.org/articles/10.3389/fbinf.2026.1756507 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1756507 <![CDATA[SHACLens: a visualization workflow for SHACL violation exploration in knowledge graphs]]> 2026-03-23T00:00:00Z Original Research Christian A. SteinparzAndreas HinterreiterLabinot BajraktariVitaly SedlyarovMarkus J. BauerThomas ZichnerMarc Streit https://www.frontiersin.org/articles/10.3389/fbinf.2026.1711637 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1711637 <![CDATA[Machine learning identifies molecular targets of Di (2-ethylhexyl) phthalate in pulmonary arterial hypertension]]> 2026-03-20T00:00:00Z Original Research Hua LiYingchun JiangJijia Li https://www.frontiersin.org/articles/10.3389/fbinf.2026.1755412 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1755412 <![CDATA[Generative AI in drug repurposing and biomarker discovery: a multimodal approach]]> 2026-03-20T00:00:00Z Original Research K. SaranyaEmerson Raja JosephTs. KalaiarasiM. Karthiga https://www.frontiersin.org/articles/10.3389/fbinf.2026.1826409 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1826409 <![CDATA[Correction: Computational discovery of SARS-CoV-2 viral entry inhibitory peptides from Androctonus mauretanicus scorpion venom: molecular docking and molecular dynamics simulations targeting the spike protein]]> 2026-03-19T00:00:00Z Correction Reda ChahirSalaheddine RedouaneJacob GalanHicham HboubLahoussaine AserrarSalma ChakirAhmed Salim LahlouHinde AassilaRachid El FatimyNaoual Oukkache https://www.frontiersin.org/articles/10.3389/fbinf.2026.1770550 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1770550 <![CDATA[Japanese genomes for pharmacogenomics: primary and secondary pipelines for population-specific insights]]> 2026-03-19T00:00:00Z Brief Research Report Charles W. CrawfordYuka NakanoMarika HayashiAntony IbrahimIssei KonoIri Sato-BaranTakeshi Ozeki https://www.frontiersin.org/articles/10.3389/fbinf.2026.1779654 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1779654 <![CDATA[Designing and immuno-informatics evaluation of a multi-epitope vaccine targeting lipoprotein A-4′-phosphatase (LpxF) for Helicobacter pylori infection control]]> 2026-03-18T00:00:00Z Original Research Pavan GollapalliTamizh Selvan Gnanasekaran