Frontiers in Bioinformatics | Evolutionary Bioinformatics section | New and Recent Articles https://www.frontiersin.org/journals/bioinformatics/sections/evolutionary-bioinformatics RSS Feed for Evolutionary Bioinformatics section in the Frontiers in Bioinformatics journal | New and Recent Articles en-us Frontiers Feed Generator,version:1 2026-05-11T17:48:23.293+00:00 60 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1839097 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1839097 <![CDATA[Correction: Protein embeddings reveal a continuous molecular landscape of host adaptation in waterfowl parvoviruses]]> 2026-04-16T00:00:00Z Correction Nihui ShaoYunfei Guo https://www.frontiersin.org/articles/10.3389/fbinf.2026.1821711 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1821711 <![CDATA[Editorial: Evolution of short genomic regions: discoveries, methods, and challenges]]> 2026-03-18T00:00:00Z Editorial Helen PiontkivskaFabia Ursula BattistuzziTzu-Chiao ChaoNicole Hansmeier https://www.frontiersin.org/articles/10.3389/fbinf.2026.1735360 https://www.frontiersin.org/articles/10.3389/fbinf.2026.1735360 <![CDATA[Evolutionary dynamics of early and late mutational signatures in metastatic cancer]]> 2026-03-05T00:00:00Z Brief Research Report Anastasia YankovskiySudhir KumarSayaka Miura https://www.frontiersin.org/articles/10.3389/fbinf.2025.1738737 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1738737 <![CDATA[Protein embeddings reveal a continuous molecular landscape of host adaptation in waterfowl parvoviruses]]> 2026-01-27T00:00:00Z Original Research Nihui ShaoYunfei Guo https://www.frontiersin.org/articles/10.3389/fbinf.2025.1704212 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1704212 <![CDATA[Assessment of phylogenetic informativeness in mitochondrial and nuclear genes for mammalian systematics using sparse learning]]> 2026-01-08T00:00:00Z Original Research Carlos G. SchragoBeatriz Mello https://www.frontiersin.org/articles/10.3389/fbinf.2025.1673480 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1673480 <![CDATA[Higher frequency of prokaryotic low complexity regions in core and orthologous genes]]> 2025-11-27T00:00:00Z Brief Research Report Vineet SaravananAlexander KravetzFabia Ursula Battistuzzi https://www.frontiersin.org/articles/10.3389/fbinf.2025.1710926 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1710926 <![CDATA[Completing a molecular timetree of Afrotheria]]> 2025-11-19T00:00:00Z Brief Research Report Jack M. CraigWhitney L. FisherAllan S. ThomasS. Blair HedgesSudhir Kumar https://www.frontiersin.org/articles/10.3389/fbinf.2025.1563786 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1563786 <![CDATA[Internal fossil constraints have more effect on the age estimates of crown Palaeognathae than different phylogenomic data type]]> 2025-08-07T00:00:00Z Original Research Alexandre Pedro SelvattiNaoko Takezaki https://www.frontiersin.org/articles/10.3389/fbinf.2025.1571568 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1571568 <![CDATA[Integrating phylogenies with chronology to assemble the tree of life]]> 2025-04-30T00:00:00Z Methods Jose Barba-MontoyaJack M. CraigSudhir Kumar https://www.frontiersin.org/articles/10.3389/fbinf.2025.1532981 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1532981 <![CDATA[Transcripts derived from AmnSINE1 repetitive sequences are depleted in the cortex of autism spectrum disorder patients]]> 2025-04-09T00:00:00Z Original Research Nicolina SciaraffaDaniele SantoniAndrea Li GreciSwonild Ilenia GenoveseClaudia CoronnelloWalter Arancio https://www.frontiersin.org/articles/10.3389/fbinf.2025.1491735 https://www.frontiersin.org/articles/10.3389/fbinf.2025.1491735 <![CDATA[Divergent evolution of low-complexity regions in the vertebrate CPEB protein family]]> 2025-03-20T00:00:00Z Original Research Serena VagliettiStefania Boggio BozzoMirella GhirardiFerdinando Fiumara https://www.frontiersin.org/articles/10.3389/fbinf.2024.1495417 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1495417 <![CDATA[Completing a molecular timetree of primates]]> 2024-12-16T00:00:00Z Brief Research Report Jack M. CraigS. Blair HedgesSudhir Kumar https://www.frontiersin.org/articles/10.3389/fbinf.2024.1433995 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1433995 <![CDATA[Time-calibrated phylogeny of neotropical freshwater fishes]]> 2024-12-06T00:00:00Z Original Research Victor A. TagliacolloMilton TanRoberto E. ReisRonielson GaiaVirgilio CarrijoMarcelo RanuziJack M. CraigJames S. Albert https://www.frontiersin.org/articles/10.3389/fbinf.2024.1441373 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1441373 <![CDATA[A time-calibrated phylogeny of the diversification of Holoadeninae frogs]]> 2024-10-02T00:00:00Z Brief Research Report Júlio C. M. ChavesFábio HeppCarlos G. SchragoBeatriz Mello https://www.frontiersin.org/articles/10.3389/fbinf.2024.1400003 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1400003 <![CDATA[AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters]]> 2024-07-10T00:00:00Z Original Research Steven WeaverVanessa M. Dávila ConnDaniel JiHannah VerdonkSantiago Ávila-RíosAndrew J. Leigh BrownJoel O. WertheimSergei L. Kosakovsky Pond https://www.frontiersin.org/articles/10.3389/fbinf.2024.1381540 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1381540 <![CDATA[The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders]]> 2024-06-24T00:00:00Z Original Research Alexander G. LucaciWilliam E. BrewJason LamannaAvery SelbergVincenzo CarnevaleAnna R. MooreSergei L. Kosakovsky Pond https://www.frontiersin.org/articles/10.3389/fbinf.2024.1351620 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1351620 <![CDATA[ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data]]> 2024-03-12T00:00:00Z Technology and Code Gennaro CalendoDara KusicJozef MadzoNeda GharaniLaura Scheinfeldt https://www.frontiersin.org/articles/10.3389/fbinf.2024.1305969 https://www.frontiersin.org/articles/10.3389/fbinf.2024.1305969 <![CDATA[MetaWin 3: open-source software for meta-analysis]]> 2024-02-08T00:00:00Z Technology and Code Michael S. Rosenberg https://www.frontiersin.org/articles/10.3389/fbinf.2023.1284744 https://www.frontiersin.org/articles/10.3389/fbinf.2023.1284744 <![CDATA[Completing a molecular timetree of apes and monkeys]]> 2023-12-15T00:00:00Z Brief Research Report Jack M. CraigGrace L. BambaJose Barba-MontoyaS. Blair HedgesSudhir Kumar https://www.frontiersin.org/articles/10.3389/fbinf.2023.1233281 https://www.frontiersin.org/articles/10.3389/fbinf.2023.1233281 <![CDATA[The origin of eukaryotes and rise in complexity were synchronous with the rise in oxygen]]> 2023-09-01T00:00:00Z Original Research Jack M. CraigSudhir KumarS. Blair Hedges