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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell. Infect. Microbiol.</journal-id>
<journal-title>Frontiers in Cellular and Infection Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell. Infect. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">2235-2988</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fcimb.2021.759944</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cellular and Infection Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Meteorological Factors Influence the Presence of Fungi in the Air; A 14-Month Surveillance Study at an Adult Cystic Fibrosis Center</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>van Rhijn</surname>
<given-names>Norman</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1445364"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Coleman</surname>
<given-names>James</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Collier</surname>
<given-names>Lisa</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Moore</surname>
<given-names>Caroline</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Richardson</surname>
<given-names>Malcolm D.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/267717"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bright-Thomas</surname>
<given-names>Rowland J.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Jones</surname>
<given-names>Andrew M.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Manchester Fungal Infection Group, Division of Infection, Immunity and Respiratory Medicine, University of Manchester</institution>, <addr-line>Manchester</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Manchester Adult Cystic Fibrosis Centre, Manchester University National Health Service (NHS) Foundation Trust</institution>, <addr-line>Manchester</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Faculty of Biology Medicine and Health, The University of Manchester</institution>, <addr-line>Manchester</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Mycology Reference Centre, European Confederation of Medical Mycology (ECMM) Excellence Centre of Medical Mycology, Manchester University National Health Service (NHS) Foundation Trust</institution>, <addr-line>Manchester</addr-line>, <country>United Kingdom</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Duncan Wilson, University of Exeter, United Kingdom</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Slavena Vylkova, Friedrich Schiller University Jena, Germany; Renan Mauch, State University of Campinas, Brazil</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Andrew M. Jones, <email xlink:href="mailto:andrew.jones@mft.nhs.uk">andrew.jones@mft.nhs.uk</email> </p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Fungal Pathogenesis, a section of the journal Frontiers in Cellular and Infection Microbiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>26</day>
<month>11</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>11</volume>
<elocation-id>759944</elocation-id>
<history>
<date date-type="received">
<day>17</day>
<month>08</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>05</day>
<month>11</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 van Rhijn, Coleman, Collier, Moore, Richardson, Bright-Thomas and Jones</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>van Rhijn, Coleman, Collier, Moore, Richardson, Bright-Thomas and Jones</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Background</title>
<p>Cystic fibrosis is an inherited disease that predisposes to progressive lung damage. Cystic fibrosis patients are particularly prone to developing pulmonary infections. Fungal species are commonly isolated in lower airway samples from patients with cystic fibrosis. Fungal spores are prevalent in the air.</p>
</sec>
<sec>
<title>Methods</title>
<p>We performed environmental air sampling surveillance at the Manchester Adult Cystic Fibrosis Centre, UK (MACFC) over a 14-month period to assess fungal growth inside and outside the CF center.</p>
</sec>
<sec>
<title>Results</title>
<p>Airborne counts of fungal spores peaked from May to October, both in outdoor and indoor samples. Collection of meteorological data allowed us to correlate fungal presence in the air with elevated temperatures and low wind speeds. Additionally, we demonstrated patient rooms containing windows had elevated fungal counts compared to rooms not directly connected to the outdoors.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>This study suggests that airborne <italic>Aspergillus fumigatus</italic> spores were more abundant during the summer months of the survey period, which appeared to be driven by increased temperatures and lower wind speeds. Indoor counts directly correlated to outdoor <italic>A. fumigatus</italic> levels and were elevated in patient rooms that were directly connected to the outdoor environment <italic>via</italic> an openable window designed for ventilation purposes. Further studies are required to determine the clinical implications of these findings for cystic fibrosis patients who are predisposed to <italic>Aspergillus</italic> related diseases, and in particular whether there is seasonal influence on incidence of <italic>Aspergillus</italic> related conditions and if screening for such complications such be increased during summer months and precautions intensified for those with a known history of <italic>Aspergillus</italic> related disease.</p>
</sec>
</abstract>
<kwd-group>
<kwd>
<italic>Aspergillus fumigatus</italic>
</kwd>
<kwd>
<italic>Penicillium</italic>
</kwd>
<kwd>fungi</kwd>
<kwd>air sampling</kwd>
<kwd>temperature</kwd>
<kwd>cystic fibrosis</kwd>
<kwd>climate</kwd>
<kwd>weather</kwd>
</kwd-group>
<counts>
<fig-count count="6"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="62"/>
<page-count count="10"/>
<word-count count="3848"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Cystic Fibrosis (CF) is a life-long inherited disorder affecting over 10,000 people in the United Kingdom and more than 70,000 people worldwide (<xref ref-type="bibr" rid="B9">Bobadilla et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B56">Taylor-Robinson et&#xa0;al., 2018</xref>). CF is caused by a mutation in the gene encoding the cystic fibrosis transmembrane conductance regulator (CFTR) protein (<xref ref-type="bibr" rid="B33">Kerem et&#xa0;al., 1989</xref>; <xref ref-type="bibr" rid="B46">Riordan et&#xa0;al., 1989</xref>). The CFTR protein is involved in intracellular calcium homeostasis and acts as a cyclic adenosine monophosphate-dependent ion channel, controlling the transport of salts and water across epithelial cell membranes (<xref ref-type="bibr" rid="B29">Grubb and Boucher, 1999</xref>). Mutations in the protein leads to defective ion flux, resulting in thickened mucus and impaired mucociliary clearance of particles and pathogens. Patients with CF are predisposed to recurrent and chronic infections which, together with an exaggerated host inflammatory response leads to progressive airway damage and eventually respiratory failure (<xref ref-type="bibr" rid="B16">Cohen and Prince, 2012</xref>; <xref ref-type="bibr" rid="B56">Taylor-Robinson et&#xa0;al., 2018</xref>).</p>
<p>In recent years, the life expectancy of CF patients has increased dramatically, with a median predicted survival of 49 years (<xref ref-type="bibr" rid="B38">McCormick et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B22">Dodge et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B56">Taylor-Robinson et&#xa0;al., 2018</xref>). Approximately 90% of CF mortality is attributed to respiratory failure secondary to chronic or recurrent infections (<xref ref-type="bibr" rid="B14">Cantin et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B8">Beswick et&#xa0;al., 2020</xref>). <italic>Aspergillus fumigatus</italic> is commonly isolated from lower respiratory tract samples (<xref ref-type="bibr" rid="B6">Bakare et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B5">Armstead et&#xa0;al., 2014</xref>) and can cause a range of diseases within CF patients, mainly but not exclusively: allergic bronchopulmonary aspergillosis (ABPA), <italic>Aspergillus</italic> bronchitis, and sensitization (<xref ref-type="bibr" rid="B7">Baxter et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B34">King et&#xa0;al., 2016</xref>). ABPA results from hypersensitivity to <italic>Aspergillus</italic> spp., occurring in 6&#x2013;25% of CF patients, most of whom are adolescents or adults (<xref ref-type="bibr" rid="B21">de Almeida et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B37">Maturu and Agarwal, 2015</xref>). <italic>Aspergillus</italic> bronchitis affects approximately 9% of CF patients, while sensitization can be found in approximately 39% of CF patients (<xref ref-type="bibr" rid="B37">Maturu and Agarwal, 2015</xref>; <xref ref-type="bibr" rid="B10">Brandt et&#xa0;al., 2018</xref>). However, there is a large variation of reported prevalence of <italic>Aspergillus</italic> infection in CF in the literature, probably due to variable methodologies both for detecting the presence of and host reaction to <italic>Aspergillus</italic> and furthermore inconsistent diagnostic criteria (<xref ref-type="bibr" rid="B36">Mastella et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B51">Stevens et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B40">Patterson and Strek, 2010</xref>).</p>
<p>Risk factors for isolation of <italic>Aspergillus</italic> in respiratory samples in CF patients have been attributed to inhaled antibiotics, oral corticosteroid treatment, and exocrine pancreatic insufficiency (<xref ref-type="bibr" rid="B12">Brenier-Pinchart et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B31">Hong et&#xa0;al., 2018</xref>). Meteorological parameters have been reported to influence fungal contamination in other healthcare settings (<xref ref-type="bibr" rid="B57">van Rhijn and Bromley, 2021</xref>) but not in CF setting. Higher outdoor mean and maximum temperatures, and also indoor temperatures, are associated with an increased fungal presence (<xref ref-type="bibr" rid="B35">Li and Kendrick, 1995</xref>; <xref ref-type="bibr" rid="B49">Singh and Chauhan, 2013</xref>; <xref ref-type="bibr" rid="B3">Alshareef and Robson, 2014</xref>). In several studies, humidity and rainfall have been correlated to higher fungal load in the atmosphere (<xref ref-type="bibr" rid="B35">Li and Kendrick, 1995</xref>; <xref ref-type="bibr" rid="B54">Takahashi, 1997</xref>; <xref ref-type="bibr" rid="B12">Brenier-Pinchart et&#xa0;al., 2009</xref>). Climate change may also be changing our daily exposure to fungi (<xref ref-type="bibr" rid="B57">van Rhijn and Bromley, 2021</xref>). Construction and demolition work have been associated with an increased isolation of fungi in air samples (<xref ref-type="bibr" rid="B50">Srinivasan et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B20">Curtis et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B42">Pilmis et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B61">Wirmann et&#xa0;al., 2018</xref>). Building works adjacent to healthcare settings are an important risk factor for nosocomial aspergillosis. Preventative measures, such as laminar airflow and HEPA filters, have been explored to attempt to keep indoor fungal loads consistently low during construction work (<xref ref-type="bibr" rid="B53">Streifel et&#xa0;al., 1989</xref>; <xref ref-type="bibr" rid="B19">Cornet et&#xa0;al., 1999</xref>; <xref ref-type="bibr" rid="B23">Falvey and Streifel, 2007</xref>). In this study, we examined the relationship between meteorological factors with environmental load of <italic>A. fumigatus</italic> and other fungi at the MACFC over a 14-month period.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Air Sampling</title>
<p>All sampling took place in the adult CF ward at the Wythenshawe Hospital, Manchester University Hospitals NHS Foundation Trust, which houses both the Manchester Adult Cystic Fibrosis Centre and the National Aspergillosis Centre. The hospital is situated in a mixed residential and rural area of south Manchester. The CF center comprises of a 22-bedded CF inpatient ward on the ground level and outpatient department and offices, situated directly above the ward on the first floor. There is a specific car park for CF patients, located opposite the ward entrance, to prevent patients from having to walk through the main hospital. Sampling was performed in the CF ward at regular intervals at consistent sites: 18 out of 22 inpatient rooms, two sites in the ward corridor, inside an anteroom that provides positive pressure (&gt;10 air changes per hour) to two inpatient rooms, and outside the kitchen on the ward (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Samples were also taken in the CF patients&#x2019; car park. Air samples were taken using a single headed SAS microbial air sampler (PBI, Milan, Italy), which used impaction onto a malt agar plate (Cherwell labs) and samples 1 m<sup>3</sup> air over 10 min. Plates were incubated at 30&#xb0;C for 4 days and sampled at a height of 1.2&#x2013;1.5 m (<xref ref-type="bibr" rid="B39">Morris et&#xa0;al., 2000</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Layout of the Pearce Ward at MACFC. A schematic representation of the Pearce Ward at MACFC. Red dots represent the sampling locations used for this study. Orange bars represent windows. The anteroom into Rooms 1 and 2 has 10 air changes per hour (ACH), compared to 1.7 ACH for other rooms.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-759944-g001.tif"/>
</fig>
<p>Fungal species were determined by macroscopic phenotypic examination and microscopic examination at the Mycology Reference Centre. Lactophenol blue was added to visualize fungal elements. Colony counts are expressed as colony forming units (CFU).</p>
</sec>
<sec id="s2_2">
<title>Meteorological Data</title>
<p>Meteorological data was obtained from the Met Office (Met Office, United Kingdom) from the Rostherne No. 2 (Cheshire East) weather station (Lat: 53.336, Long: &#x2212;2.3833), which is located approximately 6.6 km/4.10 miles away in a straight line from the Wythenshawe Hospital site. In total, 10 different meteorological variables were used: daily maximum, minimum, and mean temperatures (09:00&#x2013;09:00) in Celsius; daily total rainfall (09:00&#x2013;09:00) in mm; daily total sunshine (01:00&#x2013;24:00) in hours; daily mean wind speed and maximum gust (01:00&#x2013;24:00) in knots (kn); and daily mean, maximum and minimum relative humidity (00:00&#x2013;23:00) in %. For each variable, values were used for both each sampling date as well as the day before each sample was undertaken.</p>
</sec>
<sec id="s2_3">
<title>Data Analysis</title>
<p>Data was analyzed using R and Rstudio, using packages ggplot2, tidyverse, and corrplot (<xref ref-type="bibr" rid="B59">Wickham, 2011</xref>; <xref ref-type="bibr" rid="B58">Wei et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B60">Wickham et&#xa0;al., 2019</xref>). Correlation analysis was performed using multiple non-linear regression, with p &lt;0.05 being deemed statistically significant. The growing season was defined as May to October to subset the data. For the analysis of correlation of meteorological parameters to indoor CFUs, data from the anteroom was excluded. Data is presented as mean (SD) unless stated otherwise.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Outdoor Fungal Spores Correlate With Elevated Temperature and Low Wind Speeds</title>
<p>Environmental surveillance to quantify the abundance of fungal spores in the air was set up in and around the MACFC during November 2014&#x2013;January 2016. Sampling occurred on a total of 48 dates from November 27, 2014 until January 15, 2016, with samples mostly being taken weekly (mean gap between samples 8.8 &#xb1; 4.55 days, median: 7 days (range 6&#x2013;28 days), with allowances for holidays such as Christmas and Easter (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref> and <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplemental Data 1</bold>
</xref>). Of all the culturable fungi, the most abundant fungal species detected was <italic>A. fumigatus</italic> [mean (SD) 16.23 (25.14) colony forming unites (CFUs)], followed by <italic>Penicillium</italic> species (8.47 (32.42) CFUs) and <italic>Geotrichum</italic> (2.2 (3.99) CFUs). Peak spore counts of <italic>Aspergillus</italic> species occurred during the summer and autumn months (end of May&#x2013;October), while spores of <italic>Penicillium</italic> species peaked during autumn and winter (October to early January). <italic>Geotrichum</italic> was detected more during spring and negatively correlated with the presence of <italic>A. fumigatus</italic> (R = &#x2212;0.71, p &lt; 0.05) and <italic>Aspergillus niger</italic> in the air (R = &#x2212;1, p&#xa0;&lt;0.05) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Presence of fungal spores in outdoor air. <bold>(A)</bold> CFUs of <italic>A. fumigatus, Penicillium</italic>, <italic>A. niger</italic>, and <italic>Geotrichium</italic> in outdoor air samples measured over a 14-month period. <bold>(B)</bold> Spearman&#x2019;s rank correlation of CFUs from fungi in outdoor air samples to meteorological parameters collected on the day of sampling or the day before sampling. Statistically significant (P &lt; 0.05) correlations are shown in circles, with blue showing positive correlations and red negative correlations. Correlation values are shown and the size of the circle corresponds to this value.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-759944-g002.tif"/>
</fig>
<p>Throughout the year, we were able to positively correlate <italic>A. fumigatus</italic> spore abundance with maximum humidity (R = 0.34), maximum temperature (R = 0.35), and mean temperature (R = 0.31) during the sampling day (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref> and <xref ref-type="supplementary-material" rid="SF1">
<bold>Supplemental Figure&#xa0;1</bold>
</xref>). Spore abundance was negatively correlated with maximum gust (R = &#x2212;0.45) and mean wind speed (R = &#x2212;0.47) on the day of sampling. On the day prior to sampling, a positive correlation was found for <italic>A. fumigatus</italic> spore abundance with maximum temperature (R = 0.36), minimum humidity (R = 0.35), and minimum temperature (R = 0.36). A negative correlation was found for maximum gust (R = &#x2212;0.34) and mean humidity (R = &#x2212;0.3). A negative correlation for maximum gust and positive correlation for maximum temperature was found for both sampling day and the day before sampling. For <italic>A. niger</italic> we were able to negatively correlate sunshine on the day before sampling with abundance in air samples (R = &#x2212;0.52) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>).</p>
<p>Temperature was clearly an important factor for <italic>A. fumigatus</italic> abundance and we found a seasonal pattern for all fungi observed. Therefore, we assessed the difference in fungal abundance in air during the growing season (May&#x2013;October) and non-growing season (October&#x2013;April). An increase in <italic>A. fumigatus</italic> CFUs during the growing season (mean (SD) 19.93 (23.64) CFUs), compared to non-growing season (mean (SD) 14.25 (25.70) CFUs) was observed (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). For other fungal species this trend was not observed, with consistent CFUs in both growing and non-growing season. <italic>A. fumigatus</italic> CFUs negatively correlated with the maximum gust (R = &#x2212;0.72) and mean speed of the wind (R = &#x2212;0.72) during the growing season, no other significant correlation could be found for <italic>A. fumigatus</italic> (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref> and <xref ref-type="supplementary-material" rid="SF2">
<bold>Supplemental Figure&#xa0;2</bold>
</xref>). However, no significant differences were observed for differences in wind direction (<xref ref-type="supplementary-material" rid="SF3">
<bold>Supplemental Figure&#xa0;3</bold>
</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Fungal spores during the growing season. <bold>(A)</bold> CFUs of selected fungi during the growing season and outside of the growing season. <bold>(B)</bold> Spearman&#x2019;s rank correlation of CFUs from fungi during the growing season to meteorological parameters collected on the day of sampling or the day before sampling. Statistically significant (P &lt; 0.05) correlations are shown in circles, with blue showing positive correlations and red negative correlations. Correlation values are shown and the size of the circle corresponds to this value.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-759944-g003.tif"/>
</fig>
</sec>
<sec id="s3_2">
<title>The Presence of <italic>A. fumigatus</italic> Spores in Indoor Air is Determined by Meteorological Factors and the Presence of Windows</title>
<p>Indoor counts of <italic>A. fumigatus</italic> were generally lower compared to outdoor counts (mean (SD) 3.21 (5.04) <italic>vs</italic> 16.23 (25.15) CFUs, p &lt; 0.0001 Wilcoxon matched-pairs signed rank test) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). Indoor CFUs of <italic>A. fumigatus</italic> peaked from May to November in line with outdoor counts. Indoor and outdoor <italic>A. fumigatus</italic> correlated when matched for their sampling date (R = 0.62, p = 7.9e&#x2212;06, Spearman Rank) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>
<italic>A. fumigatus</italic> spores in indoor air samples. <bold>(A)</bold> CFUs of <italic>A. fumigatus</italic> detected in indoor air samples. Shown is the median of all indoor samples on each date. <bold>(B)</bold> The presence of <italic>A. fumigatus</italic> in indoor and outdoor samples, matched by sampling date. Spearman&#x2019;s rank correlation is shown in top left corner.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-759944-g004.tif"/>
</fig>
<p>Examining indoor <italic>A. fumigatus</italic> CFUs with meteorological parameters of the sampling day and day before sampling we identified indoor CFUs correlated positively to maximum (R = 0.38) and mean temperature (R = 0.31) similar to outdoor counts. Also, a negative correlation was found for maximum gust (R = &#x2212;0.35) and mean wind speed (R = &#x2212;0.32), in line with our findings for outdoor CFUs (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). Maximum and mean temperature correlate with each other (R = 0.95) as well as maximum gust and mean wind speed (R = 0.94) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). <italic>A. fumigatus</italic> CFUs the day before sampling positively correlated with maximum (R = 0.41) and mean temperature (R = 0.31), like the day of sampling, but also with the minimum temperature (R = 0.41) and rainfall (R = 0.41). Rainfall correlated strongly with the maximum (R = 0.91), minimum (R = 0.91), and mean temperature (R = 0.92).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>
<italic>A. fumigatus</italic> abundance correlates with temperature and wind. <bold>(A, B)</bold> Correlation matrix <italic>A. fumigatus</italic> outdoor and indoor CFUs to meteorological parameters on the day of sampling <bold>(A)</bold> or day before sampling <bold>(B)</bold>. Statistically significant (P &lt; 0.05) correlations by Spearman&#x2019;s rank correlation are shown in circles, with blue showing positive correlations and red negative correlations. Correlation values are shown and the size of the circle corresponds to this value. <bold>(C, D)</bold> CFUs of <italic>A. fumigatus</italic> in indoor (yellow) and outdoor (purple) air samples correlate to maximum temperature <bold>(C)</bold> and mean temperature <bold>(D)</bold>. Shown in the top left are correlation values and P-value by Spearman&#x2019;s rank correlation.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-759944-g005.tif"/>
</fig>
<p>We further explored the correlation between <italic>A. fumigatus</italic> CFUs indoors, outdoors and maximum or mean temperature. Increased maximum temperature correlated with elevated <italic>A. fumigatus</italic> CFUs in outdoor and indoor air (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). Similarly, higher mean temperatures resulted in higher <italic>A. fumigatus</italic> CFUs indoors and outdoors with a similar rate (R = 0.31 <italic>vs</italic> R = 0.31) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5D</bold>
</xref>). However, indoor sampling resulted in 18 samples with no <italic>A. fumigatus</italic> CFUs detected, unlike outdoors where we could detect <italic>A. fumigatus</italic> in more than 95% of sampling dates (no CFUs in four samples).</p>
<p>Three sampling locations were not in rooms that were not directly connected to the outside, and also an anteroom with positive pressure applied, were assessed for <italic>A. fumigatus</italic> CFUs. In these rooms, small numbers of CFUs (maximum detected 28 CFUs) could be detected over the course of 9 months (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>). In patient rooms that were directly connected to the outside <italic>via</italic> openable windows showed significantly higher CFUs for <italic>A. fumigatus</italic>, especially during the summer months (p &lt; 0.0001) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>). Even though all these rooms were considered identical, we detected variability of <italic>A. fumigatus</italic> CFUs between rooms. For example, in one patient bedroom (room 14) much lower counts were observed (max count = 25), than another patient bedroom where (room 17) up to 150 CFUs could be detected. A direct comparison of <italic>A. fumigatus</italic> CFUs between rooms that contained windows to the outside and rooms that were not connected to the outside revealed a significant difference (p &lt; 0.0001) (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>). In addition, a significant difference was found between rooms containing windows, rooms containing no windows and the anteroom (p &lt; 0.0001). The anteroom, with &gt;10 air changes/h, <italic>A. fumigatus</italic> CFUs were zero except for four samples (1, 1, 2, and 3 CFUs). For other fungi, no CFUs could be detected in the anteroom or patients rooms adjacent, except in three samples for <italic>Penicillium</italic> (1, 1, and 9 CFUs) (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplemental Data 1</bold>
</xref>).</p>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>
<italic>A. fumigatus</italic> spores are elevated in rooms with windows. <bold>(A)</bold>. <italic>A. fumigatus</italic> CFUs from air samples or rooms not directly adjacent to windows (Outside room 3 and Outside kitchen) or with positive pressure (Anteroom). Positive pressure results in close to 0 CFUs in air samples. <bold>(B)</bold>. <italic>A. fumigatus</italic> CFUs in air samples from patients&#x2019; rooms containing windows. <bold>(C)</bold> Comparison of <italic>A. fumigatus</italic> CFUs in rooms with windows and without windows, tested by Mann&#x2013;Whitney-U test (P &lt; 0.0001).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-759944-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>Environmental air sampling was performed at the Manchester Adult Cystic Fibrosis Centre over a period of 14 months. Indoors and outdoor areas were sampled for different fungal species. <italic>A. fumigatus</italic> and <italic>Penicillium</italic> were the most dominant species in air samples, in line with previous studies (<xref ref-type="bibr" rid="B48">Shelton et&#xa0;al., 2002</xref>). <italic>A.&#xa0;fumigatus</italic> presence in the air correlated with days with elevated temperatures (sampling day and day before sampling) and with low wind speed. These data suggest <italic>A. fumigatus</italic> spores in the air are more abundant during the summer months, which is driven by increased temperatures and lower wind speeds. Indoor counts directly correlated to outdoor <italic>A. fumigatus</italic> counts and were elevated in rooms that directly connected to the outdoor <italic>via</italic> a window.</p>
<p>This study has demonstrated a positive correlation between ambient temperature and fungal presence, especially <italic>A. fumigatus</italic>, in environmental air samples. Other studies have found similar correlations (<xref ref-type="bibr" rid="B35">Li and Kendrick, 1995</xref>; <xref ref-type="bibr" rid="B54">Takahashi, 1997</xref>; <xref ref-type="bibr" rid="B12">Brenier-Pinchart et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B3">Alshareef and Robson, 2014</xref>) in different environmental settings. Adding further granularity to these observations, we draw positive correlations with the maximum and mean temperatures on the day of sampling, and also the day before sampling. Wind also appears to play a role in the spread of fungal spores (<xref ref-type="bibr" rid="B27">Grinn-Gofro&#x144; et&#xa0;al., 2018</xref>). Here we identified a negative correlation between wind speed and fungal CFUs. Previous studies have correlated effect of wind speed to fungal load (<xref ref-type="bibr" rid="B54">Takahashi, 1997</xref>; <xref ref-type="bibr" rid="B12">Brenier-Pinchart et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B28">Grinn-Gofro&#x144; et&#xa0;al., 2011</xref>), but no consistent pattern was found, potentially because the focus of fungal species differed between studies. Sequential events may give rise to increases in fungal counts in air samples. For <italic>Coccidioides</italic> spp., the &#x201c;grow and blow&#x201d; hypothesis has been put forward to facilitate fungal spread. Rainfall promotes growth within the soil, followed by a dry spell&#xa0;with elevated temperatures driving sporulation and aerosolization of spores (<xref ref-type="bibr" rid="B18">Comrie and Glueck, 2007</xref>; <xref ref-type="bibr" rid="B55">Tamerius and Comrie, 2011</xref>). Undergoing sporulation facilitates adaptation and evolution to environmental conditions (<xref ref-type="bibr" rid="B62">Zhang et&#xa0;al., 2015</xref>). Therefore, it is likely that elevated temperatures drive fungal sporulation leading to increased spores in the air. It is currently unclear what climatic factors affect different fungal species. However, temperature has been put forward as a universal driver of fungal proliferation (<xref ref-type="bibr" rid="B3">Alshareef and Robson, 2014</xref>; <xref ref-type="bibr" rid="B15">Chaloner et&#xa0;al., 2020</xref>). As climate change will drive more days with higher temperatures, this may have drastic effects on fungal loads in air samples (<xref ref-type="bibr" rid="B52">Stott, 2016</xref>).</p>
<p>Patients with CF are at risk of <italic>Aspergillus</italic> related pulmonary complications (<xref ref-type="bibr" rid="B31">Hong et&#xa0;al., 2018</xref>) but it is not known if there is a seasonal influence on incidence of ABPA or other <italic>Aspergillus</italic> related conditions in the CF population. Studies have reported seasonal influences on rates of pulmonary infections caused both by viruses and <italic>Pseudomonas aeruginosa</italic> in CF patients (<xref ref-type="bibr" rid="B17">Collaco et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B24">Flight et&#xa0;al., 2014</xref>). <italic>P. aeruginosa</italic> acquisition in young children with CF is more observed during summer months (<xref ref-type="bibr" rid="B43">Psoter et&#xa0;al., 2013</xref>). However, in a Danish retrospective study chronic infections were more common during winter months (<xref ref-type="bibr" rid="B32">Johansen and H&#xf8;iby, 1992</xref>). <italic>P. aeruginosa</italic> and <italic>A. fumigatus</italic> can cause co-infection in CF and have been identified simultaneously in up to 60% of CF patients (<xref ref-type="bibr" rid="B6">Bakare et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B41">Paugam et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B44">Reece et&#xa0;al., 2017</xref>). In addition, increased air pollution is considered a risk factor for pulmonary exacerbations in cystic fibrosis patients (<xref ref-type="bibr" rid="B26">Goss et&#xa0;al., 2004</xref>). Elevated air pollution and temperature have a synergistic effect on each other (<xref ref-type="bibr" rid="B45">Ren et&#xa0;al., 2006</xref>). However, it is unclear how increased temperature has an effect on exacerbations caused by fungal spores.</p>
<p>Our data demonstrate that rooms with windows have significantly higher <italic>A. fumigatus</italic> counts compared to rooms without windows or with positive ventilation. It was unclear during our sampling; which windows were opened and the frequency of therefore should be monitored for future studies. Other interventions such as HEPA filters and laminar air flow systems in rooms have been proposed to keep the air free of fungi (<xref ref-type="bibr" rid="B19">Cornet et&#xa0;al., 1999</xref>; <xref ref-type="bibr" rid="B30">Hahn et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B4">Araujo and Cabral, 2010</xref>; <xref ref-type="bibr" rid="B25">Garnaud et&#xa0;al., 2012</xref>). At the MACFC, rooms with positive pressure (&gt;10 ACHs) did not reach high levels of fungal spores (9 CFUs maximum). With the exception of four samples no fungal CFUs could be detected at all in these rooms. Increased presence of fungi in the air has been directly linked to the incidence of invasive aspergillosis in patients with other health conditions (<xref ref-type="bibr" rid="B2">Alberti et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B11">Brenier-Pinchart et&#xa0;al., 2011</xref>).</p>
<p>Our study consists of samples taken over 18 months. Longer sampling would allow assessing yearly seasonal variability and the relation with fungi in the air, which has not been studied in much detail (<xref ref-type="bibr" rid="B13">Calvo et&#xa0;al., 1980</xref>; <xref ref-type="bibr" rid="B1">Adhikari et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B3">Alshareef and Robson, 2014</xref>). We were able to detect and identify <italic>A. fumigatus, Penicillium</italic> species, <italic>Geotrichum candidum</italic>, and a mixed population of non-sporulating environmental filamentous fungi. Air samples were incubated at 30&#xb0;C, which might bias towards fungi with their optimum growth at this temperature (<xref ref-type="bibr" rid="B47">Robert et&#xa0;al., 2015</xref>). Lastly, fungal CFUs were correlated to meteorological data collected from the weather station. However, we are unable to assess what parameters are directly causing increased fungal CFUs in the air. Further studies are required to find causative proof of climate and weather affecting fungal proliferation.</p>
<p>In summary, this study demonstrates that <italic>A. fumigatus</italic> spores in the air are more abundant during the summer months, which is driven by increased temperatures and lower wind speeds. Indoor counts directly correlated to outdoor <italic>A. fumigatus</italic> counts and were elevated in rooms that directly connected to the outdoor <italic>via</italic> a window. Further studies are required to determine the clinical implications of these findings for cystic fibrosis patients who are predisposed to <italic>Aspergillus</italic> related diseases, and in particular whether there is seasonal influence on incidence of <italic>Aspergillus</italic> related conditions and if screening for such complications such be increased during summer months and precautions intensified for those with a known history of <italic>Aspergillus</italic> related disease.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author Contributions</title>
<p>NR, JC, LC, CM, MR, RB-T, and AJ contributed to conception and design of the study. LC and JC organized the database. NR performed the statistical analysis. NR wrote the first draft of the manuscript. NR, JC, LC, MD, RB-T, and AJ wrote sections of the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s7" sec-type="funding-information">
<title>Funding</title>
<p>This research was funded by the Wellcome Trust, grant number 219551/Z/19/Z.</p>
</sec>
<sec id="s8" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s9" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec id="s10" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fcimb.2021.759944/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fcimb.2021.759944/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Image_1.tiff" id="SF1" mimetype="image/tiff">
<label>Supplementary Figure&#xa0;1</label>
<caption>
<p>Correlation of fungal CFUs on the sampling day and the day before sampling with all measured meteorological parameters. Spearman&#x2019;s rank correlation of CFUs from fungi in outdoor air samples to meteorological parameters collected on the day of sampling or the day before sampling. Statistically significant (P &lt; 0.05) correlations are shown in circles, with blue showing positive correlations and red negative correlations. Correlation values are shown and the size of the circle corresponds to this value.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Image_2.tiff" id="SF2" mimetype="image/tiff">
<label>Supplementary Figure&#xa0;2</label>
<caption>
<p>Correlation of fungal CFUs during the growing season with all measured meteorological parameters. Spearman&#x2019;s rank correlation of CFUs from fungi in outdoor air samples to meteorological parameters during the growing season. Statistically significant (P &lt; 0.05) correlations are shown in circles, with blue showing positive correlations and red negative correlations. Correlation values are shown and the size of the circle corresponds to this value.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Image_3.tiff" id="SF3" mimetype="image/tiff">
<label>Supplementary Figure&#xa0;3</label>
<caption>
<p>
<italic>A. fumigatus</italic> CFUs are not associated with wind direction. <italic>A. fumigatus</italic> CFUs are shown for the wind direction during sampling.</p>
</caption>
</supplementary-material>
  <supplementary-material xlink:href="DataSheet_1.xlsx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
</sec>
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