AUTHOR=Farsi Yeganeh , Tahvildari Azin , Arbabi Mahta , Vazife Fateme , Sechi Leonardo A. , Shahidi Bonjar Amir Hashem , Jamshidi Parnian , Nasiri Mohammad Javad , Mirsaeidi Mehdi 

TITLE=Diagnostic, Prognostic, and Therapeutic Roles of Gut Microbiota in COVID-19: A Comprehensive Systematic Review

JOURNAL=Frontiers in Cellular and Infection Microbiology

VOLUME=Volume 12 - 2022

YEAR=2022

URL=https://www.frontiersin.org/journals/cellular-and-infection-microbiology/articles/10.3389/fcimb.2022.804644

DOI=10.3389/fcimb.2022.804644

ISSN=2235-2988

ABSTRACT=Introduction: Coronavirus Disease 2019 (COVID-19) pandemic caused by Severe Acute Respiratory Coronavirus 2 (SARS-CoV-2) emerged from Wuhan, China in late December 2019. Considering the important role of gut microbiota in maturation, regulation and induction of the immune system and subsequent inflammatory processes, it seems that evaluating the composition of gut microbiota in COVID-19 patients compared with healthy individuals may have potential value as a diagnostic and/or prognostic biomarker for the disease. Also, therapeutic interventions affecting gut microbial flora may open new horizons in the treatment of COVID-19 patients and accelerating their recovery.
Methods: A systematic search was conducted for relevant studies published from December 2019 to September 2021 using Pubmed/Medline, Embase, and Scopus. Articles containing the following keywords in titles or abstracts were selected: “SARS-CoV-2” or “COVID-19” or “Coronavirus Disease 19” and “gastrointestinal microbes” or “dysbiosis” or “gut microbiota” or “gut bacteria” or “gut microbes” or “gastrointestinal microbiota”.
Results: Out of 1666 studies, 20 articles fulfilled the inclusion criteria and a total of 899 confirmed COVID-19 patients were examined. All included studies, showed significant association between COVID-19 and gut microbiota dysbiosis. The most alteration in bacterial composition of COVID-19 patients was depletion in genus Ruminococcus, Alistipes, Eubacterium, Bifidobacterium, Faecalibacterium, Roseburia, Fusicathenibacter, Blautia and enrichment of Eggerthella, Bacterioides, Actinomyces, Clostridium, Streptococcus, Rothia and Collinsella. Also, some gut microbiome alterations were associated with COVID-19 severity and poor prognosis including the increment of Bacteroides, Parabacteroides, Clostridium, Bifidobacterium, Ruminococcus, Campylobacter, Rothia, Corynebacterium, Megasphaera, Enterococcus and Aspergillus spp. and the decrement of Roseburia, Eubacterium, Lachnospira, Faecalibacterium and Firmicutes/Bacteroidetes ratio.
Conclusion: Our study showed a significant change of gut microbiome composition in COVID-19 patients compared with healthy individuals. This great extent of impact has proposed the gut microbiota as a potential diagnostic, prognostic and therapeutic strategy for COVID-19. There are numerous evidences about this issue and is expected to be increased in near future.
Keywords: COVID-19, SARS-CoV-2, gastrointestinal microbiome, dysbiosis, prognosis, diagnosis