<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" article-type="research-article" dtd-version="2.3" xml:lang="EN">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell. Infect. Microbiol.</journal-id>
<journal-title>Frontiers in Cellular and Infection Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell. Infect. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">2235-2988</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fcimb.2023.1152552</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cellular and Infection Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>A 3-year study of <italic>Candida</italic> infections among patients with malignancy: etiologic agents and antifungal susceptibility profile</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Sharifi</surname>
<given-names>Mahdieh</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Badiee</surname>
<given-names>Parisa</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1339486"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Abastabar</surname>
<given-names>Mahdi</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/772180"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Morovati</surname>
<given-names>Hamid</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/437253"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Haghani</surname>
<given-names>Iman</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1275364"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Noorbakhsh</surname>
<given-names>Mahta</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Mohammadi</surname>
<given-names>Rasoul</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/647197"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Medical Parasitology and Mycology, School of Medicine, Isfahan University of Medical Sciences</institution>, <addr-line>Isfahan</addr-line>, <country>Iran</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Clinical Microbiology Research Center, Shiraz University of Medical Sciences</institution>, <addr-line>Shiraz</addr-line>, <country>Iran</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Invasive Fungi Research Center, Mazandaran University of Medical Sciences</institution>, <addr-line>Sari</addr-line>, <country>Iran</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Department of Medical Mycology, School of Medicine, Mazandaran University of Medical Sciences</institution>, <addr-line>Sari</addr-line>, <country>Iran</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Department of Parasitology and Mycology, School of Medicine, Shiraz University of Medical Sciences</institution>, <addr-line>Shiraz</addr-line>, <country>Iran</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Department of Infectious Diseases, School of Medicine, Isfahan University of Medical Sciences</institution>, <addr-line>Isfahan</addr-line>, <country>Iran</country>
</aff>
<aff id="aff7">
<sup>7</sup>
<institution>Infectious Diseases and Tropical Medicine Research Center, Isfahan University of Medical Sciences</institution>, <addr-line>Isfahan</addr-line>, <country>Iran</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Danielly Corr&#xea;a Moreira, Oswaldo Cruz Foundation (Fiocruz), Brazil</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Nivea Pereira De Sa, Stony Brook University, United States; Shallu Kathuria, National Centre for Disease Control (NCDC), India</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Rasoul Mohammadi, <email xlink:href="mailto:Dr.rasoul_mohammadi@yahoo.com">Dr.rasoul_mohammadi@yahoo.com</email>
</p>
</fn>
<fn fn-type="other" id="fn003">
<p>&#x2020;ORCID: Rasoul Mohammadi, <uri xlink:href="https://orcid.org/0000-0002-8220-4511">orcid.org/0000-0002-8220-4511</uri>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>05</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>13</volume>
<elocation-id>1152552</elocation-id>
<history>
<date date-type="received">
<day>27</day>
<month>01</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>04</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Sharifi, Badiee, Abastabar, Morovati, Haghani, Noorbakhsh and Mohammadi</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Sharifi, Badiee, Abastabar, Morovati, Haghani, Noorbakhsh and Mohammadi</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Objective</title>
<p>Opportunistic fungal infections by <italic>Candida</italic> species arise among cancer patients due to the weakened immune system following extensive chemotherapy. Prophylaxis with antifungal agents have developed the resistance of <italic>Candida</italic> spp. to antifungals. Accurate identification of yeasts and susceptibility patterns are main concerns that can directly effect on the treatment of patients.</p>
</sec>
<sec>
<title>Methods</title>
<p>Over a period of three years, 325 cancer patients suspected to <italic>Candida</italic> infections were included in the current investigation. The clinical isolates were molecularly identified by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). All strains, were examined for <italic>in vitro</italic> susceptibility to the amphotericin B, itraconazole, fluconazole, and anidulafungin according to the CLSI M27 document.</p>
</sec>
<sec>
<title>Results</title>
<p>Seventy-four cancer patients had <italic>Candida</italic> infections (22.7%). <italic>Candida albicans</italic> was the most common species (83.8%). Antifungal susceptibility results indicated that 100% of the <italic>Candida</italic> isolates were sensitive to amphotericin B; however, 17.6%, 9.4%, and 5.4% of clinical isolates were resistant to anidulafungin, fluconazole, and itraconazole, respectively.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>The findings of the present work shows a warning increase in resistance to echinocandins. Since all fluconazole resistance isolates were obtained from candidemia, we recommend amphotericin B as the first line therapy for this potentially fatal infection.</p>
</sec>
</abstract>
<kwd-group>
<kwd>
<italic>Candida</italic> infections</kwd>
<kwd>malignancy</kwd>
<kwd>antifungal susceptibility</kwd>
<kwd>molecular identification</kwd>
<kwd>epidemiology</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="4"/>
<equation-count count="0"/>
<ref-count count="31"/>
<page-count count="7"/>
<word-count count="2817"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Fungal Pathogenesis</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
    <p>Candidiasis is an opportunistic fungal infection closely connected to malignancies and the complications of their treatment. Incidence of <italic>Candida</italic> infections has been showed to be ranging from 7 to 52% among cancer patients (<xref ref-type="bibr" rid="B15">Lone et al., 2014</xref>). The cytotoxic anti-cancer drugs have severe effects on mucosal immune defense, leading to <italic>Candida</italic> colonization. <italic>Candida</italic> may impel some types of cancer including oral squamous cell carcinoma (OSCC) by using of carcinogenic compounds production such as nitrosamines and N&#x2212;nitrosobenzylmethylamine (<xref ref-type="bibr" rid="B14">Krogh et al., 1987</xref>). Although <italic>C. albicans</italic> is the most prevalent species, but non-<italic>albicans Candida</italic> species including <italic>C. tropicalis</italic>, <italic>Pichia kudriavzevii</italic> (<italic>C. krusei</italic>), <italic>Meyerozyma guilliermondii</italic> (<italic>C. guilliermondii</italic>), <italic>C. glabrata, C. parapsilosis</italic>, and <italic>Kluyveromyces marxianus</italic> (<italic>C. kefyr</italic>) with a reduced susceptibility to echinocandins and triazoles become a consequential clinical challenge (<xref ref-type="bibr" rid="B8">Eddouzi et&#xa0;al., 2013</xref>). Prophylaxis with azoles and echinocandins among vulnerable populations, have been connected to a shift from <italic>C</italic>. <italic>albicans</italic> to non-<italic>albicans Candida</italic> species in some countries (<xref ref-type="bibr" rid="B4">Cleveland et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B20">Pfaller et&#xa0;al., 2014a</xref>). Since there are main differences in species distributions and drug susceptibilities in various regions, we aimed to determine <italic>Candida</italic> distribution and antifungal susceptibility of clinical isolates among cancer patients in Isfahan, Iran.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="s2_1">
<title>Patients</title>
<p>A total of 325 suspected cases referred to 4 university hospitals (Al-Zahra, Seyed-al-Shohada, Imam Hossein, and Amin) were included in this study from April 2018 to June 2021 based on clinical manifestations. Patients who had not received haematological/oncological treatment within the past 12 months were excluded from the study. All types of <italic>Candida</italic> infections were included. Written informed consent for participation provided by all patients.</p>
</sec>
<sec id="s2_2">
<title>Molecular identification</title>
<sec id="s2_2_1">
<title>PCR-RFLP</title>
<p>Boiling method was used to extract genomic DNA (<xref ref-type="bibr" rid="B26">Silva et&#xa0;al., 2012</xref>). Briefly, a loopful of fresh colony was suspended in 80 &#xb5;L of double distilled water and boiled for 20&#xa0;min, then centrifuged for 8&#xa0;min at 6000 rpm, and then the supernatant (containing DNA) was used for PCR. The ITS1-5.8S-ITS2 region was amplified using the universal primers ITS1 (5-TCCGTAGGTGAACCTGCGG-3) and ITS4 (5- TCCTCCGCTTATTGATATGC-3) (<xref ref-type="bibr" rid="B30">White et&#xa0;al., 1990</xref>) in a final volume of 25 &#x3bc;l, containing 2 &#x3bc;l of extracted DNA, 0.4 mM of dNTPs, 1.5 mM of MgCl<sub>2</sub>, 30 pmol of each primer, 1.25 U of Taq DNA polymerase, and 2.5 &#x3bc;l of 10&#xd7; PCR buffer. The following program was set for PCR: 1 cycle at 95&#xb0;C for 5&#xa0;min, followed by 30 cycles of 1&#xa0;min at 94&#xb0;C, 45 sec at 55&#xb0;C, and 45 sec at 72&#xb0;C, with a final extension step at 72&#xb0;C for 7&#xa0;min. Digestion of PCR products were performed with 1U of restriction enzyme <italic>Msp</italic>I (Fermentas, Vilnius, Lithuania) in a final reaction volume of 15 &#x3bc;l containing 3.5 &#x3bc;l water, 1.5 &#x3bc;l buffer, and 10 &#x3bc;l PCR product at 37&#xb0;C for 20&#xa0;min (FastDigest&#x2122;). PCR amplicons and RFLP products were run onto 1.5% and 2% agarose gel electrophoresis, respectively. The products were stained with SYBR Safe DNA gel stain (1:10,000 dilution in Tris/Borate/EDTA) and then photographed.</p>
</sec>
<sec id="s2_2_2">
<title>Antifungal susceptibility testing</title>
<p>According to the clinical and laboratory standard institute (CLSI) document M27 (<xref ref-type="bibr" rid="B5">Clinical and Laboratory Standards Institute (M27), 2017</xref>), minimum inhibitory concentrations (MICs) of antifungals viz. fluconazole (Sigma-Aldrich, Germany), amphotericin B (Sigma-Aldrich, Germany), itraconazole (Janssen Research Foundation, Beerse, Belgium), and anidulafungin (Cayman Chemical, USA) were assessed. Final concentrations for antifungal agents were as follows: itraconazole and amphotericin B (0.0313&#x2013;16 &#x3bc;g/ml), fluconazole (0.125&#x2013;64 &#x3bc;g/ml), and anidulafungin (0.015&#x2013;8 &#x3bc;g/ml). A serial dilution of each antifungal was prepared in RPMI1640 medium (with L-Glutamine, without bicarbonate) (Sigma Chemical Co., St. Louis, MO, USA). Compared to a McFarland standard; no. 0.5&#xa0;=&#xa0;1&#x2013;5&#xd7;10<sup>6</sup> CFU/ml, the desired final inoculum size in the wells was 0.5&#xd7;10<sup>3</sup> to 2.5&#xd7;10<sup>3</sup> CFU/ml after 100 &#x3bc;l inoculation. Microplates were incubated at 35&#xb0;C, and the MICs were visually determined after 24&#xa0;h. The MIC endpoint for fluconazole, itraconazole, and anidulafungin have been described as the level which inhibited a significant growth of fungus (50%) compared to drug-free growth control, while for amphotericin B, 100% growth inhibition is considered. <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref> shows interpretive breakpoints for <italic>in vitro</italic> susceptibility testing of <italic>Candida</italic> species according to M27 and M60 documents, Borman et&#xa0;al., and Mroczy&#x144;ska, et&#xa0;al. (<xref ref-type="bibr" rid="B5">Clinical and Laboratory Standards Institute (M27), 2017</xref>; <xref ref-type="bibr" rid="B6">Clinical and Laboratory Standards Institute (M60), 2017</xref>; <xref ref-type="bibr" rid="B3">Borman et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B18">Mroczy&#x144;ska and Brillowska-D&#x105;browska, 2020</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Interpretive guidelines for antifungal susceptibility testing of <italic>Candida</italic> species.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="center">Antifungal agent</th>
<th valign="top" rowspan="2" align="center">
<italic>Candida</italic> species</th>
<th valign="top" colspan="3" align="center">Breakpoints (&#x3bc;g/mL)</th>
</tr>
<tr>
<th valign="top" align="center">S</th>
<th valign="top" align="center">SDD (OR) I</th>
<th valign="top" align="center">R</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">Amphotericin B</td>
<td valign="top" align="center">
<italic>C. albicans</italic>
<break/>
<italic>C. glabrata</italic>
<break/>
<italic>C. tropicalis</italic>
<break/>
<italic>C. parapsilosis</italic>
<break/>
<sup>a</sup> <italic>C. krusei</italic>
<break/>
<sup>b</sup> <italic>C. famata</italic>
</td>
<td valign="top" align="center">&lt;1<break/>&lt;1<break/>&lt;1<break/>&lt;1<break/>&lt;1<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">&#x2265;1<break/>&#x2265;1<break/>&#x2265;1<break/>&#x2265;1<break/>&#x2265;1<break/>N/A</td>
</tr>
<tr>
<td valign="top" align="center">Fluconazole</td>
<td valign="top" align="center">
<italic>C. albicans</italic>
<break/>
<italic>C. glabrata</italic>
<break/>
<italic>C. tropicalis</italic>
<break/>
<italic>C. parapsilosis</italic>
<break/>
<italic>C. krusei</italic>
<break/>
<italic>C. famata</italic>
</td>
<td valign="top" align="center">&#x2264;2<break/>N/A <break/>&#x2264;2<break/>&#x2264;2<break/>N/A<break/>N/A</td>
<td valign="top" align="center">4<break/>&#x2264;32<break/>4<break/>4<break/>N/A<break/>N/A</td>
<td valign="top" align="center">&#x2265;8<break/>&#x2265;64<break/>&#x2265;8<break/>&#x2265;8<break/>N/A<break/>N/A</td>
</tr>
<tr>
<td valign="top" align="center">Itraconazole</td>
<td valign="top" align="center">
<italic>C. albicans</italic>
<break/>
<italic>C. glabrata</italic>
<break/>
<italic>C. tropicalis</italic>
<break/>
<italic>C. parapsilosis</italic>
<break/>
<italic>C. krusei</italic>
<break/>
<italic>C. famata</italic>
</td>
<td valign="top" align="center">&#x2264;0.125<break/>&#x2264;0.125<break/>&#x2264;0.125<break/>&#x2264;0.125<break/>&#x2264;0.125<break/>N/A</td>
<td valign="top" align="center">0.25-0.5<break/>0.25-0.5<break/>0.25-0.5<break/>0.25-0.5<break/>0.25-0.5<break/>N/A</td>
<td valign="top" align="center">&#x2265;1<break/>&#x2265;1<break/>&#x2265;1<break/>&#x2265;1<break/>&#x2265;1<break/>N/A</td>
</tr>
<tr>
<td valign="top" align="center">Anidulafungin</td>
<td valign="top" align="center">
<italic>C. albicans</italic>
<break/>
<italic>C. glabrata</italic>
<break/>
<italic>C. tropicalis</italic>
<break/>
<italic>C. parapsilosis</italic>
<break/>
<italic>C. krusei</italic>
<break/>
<italic>C. famata</italic>
</td>
<td valign="top" align="center">&#x2264;0.25<break/>&#x2264;0.12<break/>&#x2264;0.25<break/>&#x2264;2<break/>&#x2264;0.25<break/>N/A</td>
<td valign="top" align="center">0.5<break/>&#x2264;0.25<break/>0.5<break/>4<break/>0.5<break/>N/A</td>
<td valign="top" align="center">&#x2265;1<break/>&#x2265;0.5<break/>&#x2265;1<break/>&#x2265;8<break/>&#x2265;1<break/>N/A</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>
<sup>a</sup>
</sup>The breakpoints of fluconazole has not been described for C. krusei, because it is intrinsically resistant to fluconazole; <sup>b</sup>Antifungal agents have no breakpoints for uncommon <italic>Candida</italic> species such as <italic>C. famata</italic>. S, Susceptible; I, Intermediate; R, Resistant; and SDD, Susceptible dose dependent; N/A, Not applicable.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec id="s2_3">
<title>Statistical analysis</title>
<p>The relationship among <italic>Candida</italic> infections and age of patients, gender, and type of cancer was adjusted using Fisher&#x2019;s exact test and Mann&#x2013;Whitney U&#x2212;test. A <italic>P</italic>-value less than 0.05 was considered statistically significant. The MIC range, MIC<sub>50</sub> (the minimum concentration of antifungal agent at which 50% of isolates are inhibited) and MIC<sub>90</sub> (the minimum concentration of antifungal agent at which 90% of isolates are inhibited) were determined.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<p>Over the investigation period, 74 cases of <italic>Candida</italic> infection were detected. Forty-eight patients (64.8%) had solid organ tumors and 26 patients (35.2%) had haematological malignancies (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Age range was between 1-89 years with median age of 47.3. Gender ratio was 43 males per 31females. The most <italic>Candida</italic> species were isolated from urine (n=24), bronchoalveolar lavage (BAL) (n=15), blood (n=13), and esophageal biopsies (n=7) (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). <italic>Candida albicans</italic> was the most prevalent species (83.8%) followed by <italic>C. glabrata</italic> (5.4%), <italic>C. tropicalis</italic> (4%), <italic>C. parapsilosis</italic> (4%), <italic>C. krusei</italic> (1.3%), and <italic>C. famata</italic> (1.3%) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>; <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). The prevalence of <italic>C. albicans</italic> was significantly higher than other species (<italic>P</italic> = 0.029). In solid organ tumor group, the type of cancer was not statistically different (<italic>P</italic> = 0.085); however, in patients with haematological malignancies, leukemia was significantly more common among patients (<italic>P</italic> = 0.043) (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). Antifungal susceptibility results are shown in <xref ref-type="table" rid="T4">
<bold>Table&#xa0;4</bold>
</xref>. Briefly, our findings indicated that all clinical isolates (100%) were sensitive to amphotericin B. The lowest activity was observed in anidulafungin against <italic>Candida</italic> spp. In addition, 83.8% and 81.1% of isolates were sensitive to fluconazole and itraconazole, respectively.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Classification of patients according to the type of cancer.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-13-1152552-g001.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Clinical specimens from which <italic>Candida</italic> species were isolated.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center">Clinical Specimens</th>
<th valign="top" align="center">
<italic>Candida</italic> species</th>
<th valign="top" align="center">Total Number (%)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">Urine</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=19), <italic>C. glabrata</italic> (n=1), <italic>C. tropicalis</italic> (n=1), <italic>C. parapsilosis</italic> (n=1), <italic>C. krusei</italic> (n=1), <italic>C. famata</italic> (n=1)</td>
<td valign="top" align="center">24 (32.4%)</td>
</tr>
<tr>
<td valign="top" align="center">BAL</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=13), <italic>C. glabrata</italic> (n=1), <italic>C. parapsilosis</italic> (n=1)</td>
<td valign="top" align="center">15 (20.3%)</td>
</tr>
<tr>
<td valign="top" align="center">Blood</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=12), <italic>C. glabrata</italic> (n=1)</td>
<td valign="top" align="center">13 (17.5%)</td>
</tr>
<tr>
<td valign="top" align="center">Esophageal Biopsy</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=5), <italic>C. tropicalis</italic> (n=2)</td>
<td valign="top" align="center">7 (9.4%)</td>
</tr>
<tr>
<td valign="top" align="center">Gastric Biopsy</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=4)</td>
<td valign="top" align="center">4 (5.4%)</td>
</tr>
<tr>
<td valign="top" align="center">Wound</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=3), <italic>C. parapsilosis</italic> (n=1)</td>
<td valign="top" align="center">4 (5.4%)</td>
</tr>
<tr>
<td valign="top" align="center">Thrush</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=2)</td>
<td valign="top" align="center">2 (2.7%)</td>
</tr>
<tr>
<td valign="top" align="center">Ascites</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=2)</td>
<td valign="top" align="center">2 (2.7%)</td>
</tr>
<tr>
<td valign="top" align="center">Perleche</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=1)</td>
<td valign="top" align="center">1 (1.3%)</td>
</tr>
<tr>
<td valign="top" align="center">Abscess</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=1)</td>
<td valign="top" align="center">1 (1.3%)</td>
</tr>
<tr>
<td valign="top" align="center">Nail</td>
<td valign="top" align="center">
<italic>C. glabrata</italic> (n=1)</td>
<td valign="top" align="center">1 (1.3%)</td>
</tr>
<tr>
<td valign="top" align="center">Total</td>
<td valign="top" align="center">
<italic>C. albicans</italic> (n=62), <italic>C. glabrata</italic> (n=4), <italic>C. tropicalis</italic> (n=3), <italic>C. parapsilosis</italic> (n=3), <italic>C. krusei</italic> (n=1), <italic>C. famata</italic> (n=1)</td>
<td valign="top" align="center">74 (100%)</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Agarose gel electrophoresis of RFLP products. <bold>(A)</bold> Lane 1: <italic>C. albicans</italic> and <italic>C. parapsilosis</italic> (mixed), lane 2: <italic>C. tropicalis</italic>, lane 3: <italic>C. famata</italic>, and M is 100 bp DNA size marker, <bold>(B)</bold> Lane 1: <italic>C. albicans</italic>, lanes 2, 3: <italic>C. glabrata</italic>, and M is 100 bp DNA size marker.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-13-1152552-g002.tif"/>
</fig>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Statistical analysis for <italic>Candida</italic> infections and variables of age, gender and type of cancer.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="center">Variable</th>
<th valign="top" rowspan="2" align="center">Age</th>
<th valign="top" rowspan="2" align="center">Gender</th>
<th valign="top" colspan="2" align="center">Type of Cancer</th>
</tr>
<tr>
<th valign="top" align="center">Solid Organ Tumors</th>
<th valign="top" align="center">Haematological Malignancies</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="top" colspan="5" align="center">
<italic>P</italic>-value (SD/NSD)</th>
</tr>
<tr>
<td valign="top" align="left">
<bold>
<italic>Candida</italic> Infections</bold>
</td>
<td valign="top" align="center">
<italic>P</italic> = 0.67 (NSD)</td>
<td valign="top" align="center">
<italic>P</italic> = 0.15 (NSD)</td>
<td valign="top" align="center">
<italic>P</italic> = 0.085 (NSD)</td>
<td valign="top" align="center">
<italic>P</italic> = 0.043 (SD)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>SD, Significant difference; NSD, No significant difference.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>MIC range, MIC<sub>50</sub>, MIC<sub>90</sub>, and geometric mean of the antifungals against <italic>Candida</italic> spp. and susceptibility pattern of clinical isolates.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="center">
<italic>Candida </italic>spp.</th>
<th valign="top" rowspan="2" align="center">MIC range (&#x3bc;g/mL)</th>
<th valign="top" rowspan="2" align="center">MIC<sub>50</sub> (&#x3bc;g/mL)</th>
<th valign="top" rowspan="2" align="center">MIC<sub>90</sub> (&#x3bc;g/mL)</th>
<th valign="top" rowspan="2" align="center">GM</th>
<th valign="top" align="center">S</th>
<th valign="top" align="center">I/SDD</th>
<th valign="top" align="center">R</th>
</tr>
<tr>
<th valign="top" colspan="3" align="center">Number of Isolates</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">
<bold>
<italic>C. albicans</italic>
</bold>
</td>
<td valign="top" align="center">AmB (0.0313-0.5)<break/>FLZ (0.125-64)<break/>ITZ (0.0313-4)<break/>AFG (0.015-1.92)</td>
<td valign="top" align="center">0.125<break/>1<break/>0.062<break/>0.12</td>
<td valign="top" align="center">0.5<break/>4<break/>0.25<break/>0.48</td>
<td valign="top" align="center">0.141<break/>0.892<break/>0.078<break/>0.106</td>
<td valign="top" align="center">62<break/>53<break/>53<break/>42</td>
<td valign="top" align="center">0<break/>3<break/>6<break/>14</td>
<td valign="top" align="center">0<break/>6<break/>3<break/>6</td>
</tr>
<tr>
<td valign="top" align="center">
<bold>
<italic>C. glabrata</italic>
</bold>
</td>
<td valign="top" align="center">AmB (0.0313-0.5)<break/>FLZ (0.5-32)<break/>ITZ (0.0313-4)<break/>AFG (0.015-4)</td>
<td valign="top" align="center">0.25<break/>0.5<break/>0.0313<break/>0.015</td>
<td valign="top" align="center">0.5<break/>32<break/>4<break/>4</td>
<td valign="top" align="center">0.176<break/>1.68<break/>0.148<break/>0.173</td>
<td valign="top" align="center">4<break/>3<break/>3<break/>2</td>
<td valign="top" align="center">0<break/>0<break/>0<break/>0</td>
<td valign="top" align="center">0<break/>1<break/>1<break/>2</td>
</tr>
<tr>
<td valign="top" align="center">
<bold>
<italic>C. tropicalis</italic>
</bold>
</td>
<td valign="top" align="center">AmB (0.0313-0.5)<break/>FLZ (1-2)<break/>ITZ (0.125-0.5)<break/>AFG (0.5-2)</td>
<td valign="top" align="center">0.062<break/>2<break/>0.25<break/>1</td>
<td valign="top" align="center">0.5<break/>2<break/>0.5<break/>2</td>
<td valign="top" align="center">0.099<break/>1.58<break/>0.25<break/>1</td>
<td valign="top" align="center">3<break/>3<break/>1<break/>0</td>
<td valign="top" align="center">0<break/>0<break/>2<break/>0</td>
<td valign="top" align="center">0<break/>0<break/>0<break/>3</td>
</tr>
<tr>
<td valign="top" align="center">
<bold>
<italic>C. parapsilosis</italic>
</bold>
</td>
<td valign="top" align="center">AmB (0.0313-0.5)<break/>FLZ (0.25-2)<break/>ITZ (0.0313-0.062)<break/>AFG (0.015-2)</td>
<td valign="top" align="center">0.125<break/>0.5<break/>0.0313<break/>0.03</td>
<td valign="top" align="center">0.5<break/>2<break/>0.062<break/>2</td>
<td valign="top" align="center">0.125<break/>0.629<break/>0.039<break/>0.096</td>
<td valign="top" align="center">3<break/>3<break/>3<break/>2</td>
<td valign="top" align="center">0<break/>0<break/>0<break/>0</td>
<td valign="top" align="center">0<break/>0<break/>0<break/>1</td>
</tr>
<tr>
<td valign="top" align="center">
<bold>
<italic>C. krusei</italic>
</bold>
</td>
<td valign="top" align="center">AmB (0.5)<break/>FLZ (4)<break/>ITZ (0.25)<break/>AFG (4)</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">1<break/>N/A<break/>0<break/>0</td>
<td valign="top" align="center">0<break/>N/A<break/>1<break/>0</td>
<td valign="top" align="center">0<break/>N/A<break/>0<break/>1</td>
</tr>
<tr>
<td valign="top" align="center">
<xref ref-type="table-fn" rid="fnT4_1">
<sup>a</sup>
</xref>
<italic>C. famata</italic>
</td>
<td valign="top" align="center">AmB (0.5)<break/>FLZ (64)<break/>ITZ (16)<break/>AFG (8)</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
<td valign="top" align="center">N/A<break/>N/A<break/>N/A<break/>N/A</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="fnT4_1">
<label>a</label>
<p>Antifungal agents have no breakpoints for uncommon <italic>Candida</italic> species such as <italic>C. famata</italic>. GM, geometric mean; S, susceptible; I, intermediate; R, resistant; and SDD, susceptible dose dependent; AmB, amphotericin B; FLZ, fluconazole; ITZ, itraconazole; AFG, anidulafungin; N/A, Not applicable.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>
<italic>Candida</italic> infections can be considered as an important sign of immunosuppression in patients with malignancies. Most cancer patients are neutropenic (diminution of blood neutrophils to less than 1500/mm<sup>3</sup>) due to the cytotoxic chemotherapy, hematological disorders, and acute leukemia (<xref ref-type="bibr" rid="B29">Walsh and Gamaletsou, 2013</xref>). This condition is one of the main predisposing factors for invasive fungal infections (IFIs) such as invasive aspergillosis and candidiasis (<xref ref-type="bibr" rid="B27">Spiess et&#xa0;al., 2007</xref>). The incidence of fungal infections among cancer patients is connected to the immune system status, antifungal resistance rates, and type of malignancy (<xref ref-type="bibr" rid="B2">Bhatt et&#xa0;al., 2011</xref>). In the present study, the most clinical samples were obtained from urine (32.4%). Candiduria in cancer patients should be considered as a marker for disseminated candidiasis and appropriate antifungal therapy is needed (<xref ref-type="bibr" rid="B10">Georgiadou et&#xa0;al., 2013</xref>). All patients with candiduria were treated with fluconazole; however, in three patients (12.5%), amphotericin B were added to their regimen due to the positive blood culture. The presence of <italic>Candida</italic> in the upper respiratory tract of cancer patients is usual, and cannot be evaluated as invasive pulmonary <italic>Candida</italic> infection. Only histopathological examinations can prove the infection (<xref ref-type="bibr" rid="B13">Kontoyiannis et&#xa0;al., 2002</xref>), nevertheless, none of the patients with pulmonary symptoms (n=15) underwent pathology examination, and this is one of the main limitations of our study. Candidemia is a fatal fungal infection nearly related to cancer and the difficulties of its treatment. Here, we isolated 13 <italic>Candida</italic> strains (17.5%) from patients with bloodstream infections (BSIs). Interestingly, except for one case, all BSIs were caused by C<italic>. albicans</italic>, and all fluconazole-resistant isolates were obtained from the blood samples. Gastroesophageal biopsies were in the fourth place of clinical specimens that were collected endoscopically. Gastroesophageal candidiasis have been shown to be increasing in cancer patients who consuming acid suppressing therapy (AST) and proton pump inhibitors (PPIs) (<xref ref-type="bibr" rid="B7">Daniell, 2016</xref>), because these drugs change the gastric pH, which can encourage <italic>Candida</italic> colonization of the esophagus (patients with reflux) and gastrointestinal tract (<xref ref-type="bibr" rid="B24">Shah et&#xa0;al., 2015</xref>). In agreement, all patients were taking PPIs (omeprazole; n=6, pantoprazole; n=3, and lansoprazole; n=2) in this investigation. Although stomach and esophageal cancers were the most prevalent malignancies reported by Kolahdoozan et&#xa0;al. in 2010 (<xref ref-type="bibr" rid="B12">Kolahdoozan et&#xa0;al., 2010</xref>); however, leukemia and breast cancers were the most common types of cancers in our study (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Nine out of 13 patients with candidemia had leukemia (69.2%). <italic>Candida albicans</italic> is the most common opportunistic yeast in the clinical setting, which causes a widespread of infections ranging from mucocutaneous lesions to lethal deep-tissue infections (<xref ref-type="bibr" rid="B22">Pu et&#xa0;al., 2017</xref>). We also revealed <italic>C. albicans</italic> as the most frequent species in this survey (83.8%) which was isolated from all specimens except nail infection. <italic>In vitro</italic> antifungal activities of four antifungal agents were assessed for clinical isolates, and we found that 17.6% of <italic>Candida</italic> spp. were resistant to anidulafungin, 9.4% to fluconazole, and 5.4% to itraconazole. None of them were resistant to amphotericin B. Our results are in line with <xref ref-type="bibr" rid="B11">Hamzehee et&#xa0;al. (2019)</xref> which reported a 9.52% and 4.7% resistance to fluconazole and itraconazole, respectively. Unlike the study of <xref ref-type="bibr" rid="B25">Sharifynia et&#xa0;al. (2016)</xref>, who reported 62.5% resistance to amphotericin B, in the present study, all isolates were sensitive to amphotericin B, which were consistent with the results of the Roy study (<xref ref-type="bibr" rid="B23">Roy et&#xa0;al., 2013</xref>). Infectious Diseases Society of America (IDSA) proposes the echinocandins (micafungin, caspofungin, and anidulafungin) as the newest class of antifungals for disseminated <italic>Candida</italic> infections as initial therapy in both neutropenic and non-neutropenic patients (<xref ref-type="bibr" rid="B19">Pappas et&#xa0;al., 2016</xref>), nevertheless, fluconazole is still broadly consumed due to its availability for both parenteral and enteral administration and low cost of the drug. Our findings showed that resistance to anidulafungin was more than fluconazole, and 6 out of 12 resistant isolates (50%) were obtained from candidemia. Unlike the study of <xref ref-type="bibr" rid="B17">Mohamed et&#xa0;al. (2018)</xref>, which the most common strains were non-<italic>albicans</italic> (70.7%), in the present study, 83.8% of the clinical isolates were <italic>C. albicans</italic>. This variation in different geographical areas is related to many factors such as patient demographic features, various antifungal therapy practices, chronic underlying diseases, and use of indwelling catheters (<xref ref-type="bibr" rid="B31">Yapar, 2014</xref>). <italic>Candida tropicalis</italic> is main reported non-<italic>albicans Candida</italic> species in Asia and tropical regions (<xref ref-type="bibr" rid="B28">Tan et&#xa0;al., 2016</xref>) compared to the United States and Europe, where <italic>C. glabrata</italic> is the most leading non-<italic>albicans</italic> species (<xref ref-type="bibr" rid="B9">Falagas et&#xa0;al., 2010</xref>); however, <italic>C. glabrata</italic> was the most prevalent non-<italic>albicans Candida</italic> species in the current study. Increased number of <italic>C. glabrata</italic> isolates in Iran (<xref ref-type="bibr" rid="B1">Aslani et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B16">Mardani et&#xa0;al., 2020</xref>), may be related to the overuse of fluconazole as prophylaxis and treatment.</p>
</sec>
<sec id="s5" sec-type="conclusion">
<title>Conclusion</title>
<p>Although prophylaxis with azoles and echinocandins is one of the main factors in shifting the etiologic agents from <italic>albicans</italic> to non-<italic>albicans</italic> (<xref ref-type="bibr" rid="B20">Pfaller et&#xa0;al., 2014a</xref>), but our results revealed that <italic>C. albicans</italic> was still the leading cause of infection. The echinocandin anidulafungin is broadly used as first-line antifungal therapy for invasive candidiasis and candidemia (<xref ref-type="bibr" rid="B21">Pfaller et&#xa0;al., 2014b</xref>); nevertheless, the antifungal resistance was predominantly restricted to anidulafungin (17.6%) and fluconazole (9.4%) in the present study. Among non-<italic>albicans Candida</italic> species, all <italic>C. tropicalis</italic> were resistant to anidulafungin, and <italic>C. glabrata</italic> showed the most resistance to antifungal agents. Since the resistance to echinocandins and other antifungal agents is still infrequent, it alarms for an uninterrupted inspection and exacerbation of antifungal stewardship policies to decrease acquired resistance among clinical isolates.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s7" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>This research was approved by the Ethics committee of Isfahan University of Medical Sciences (no. IR.MUI.MED.REC.1399.1056). Written informed consent to participate in this study was provided by the participants&#x2019; legal guardian/next of kin.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>Writing original draft preparation: RM. Patient&#x2019;s follow-up and data collection: MS, MN and RM. Identification of the fungi: RM, MS and HM. Antifungal susceptibility testing: MS, PB, MA and IH. Reviewing and editing the manuscript: RM, HM and PB. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>The Project was financially supported by a grant from the Isfahan University of Medical Sciences (no. 399985).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>The authors would like to thank the laboratory personnel of Al-Zahra, Seyed Al-Shohada, Amin, and Imam Hossein Children&#x2019;s hospitals for their cooperation to collect clinical specimens.</p>
</ack>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aslani</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Janbabaei</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Abastabar</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Meis</surname> <given-names>J. F.</given-names>
</name>
<name>
<surname>Babaeian</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Khodavaisy</surname> <given-names>S.</given-names>
</name>
<etal/>
</person-group>. (<year>2018</year>). <article-title>Identification of uncommon oral yeasts from cancer patients by MALDI-TOF mass spectrometry</article-title>. <source>BMC Infect. Dis.</source> <volume>18</volume>, <fpage>24</fpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1186/s12879-017-2916-5</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bhatt</surname> <given-names>V. R.</given-names>
</name>
<name>
<surname>Viola</surname> <given-names>G. M.</given-names>
</name>
<name>
<surname>Ferrajoli</surname> <given-names>A.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Invasive fungal infections in acute leukemia</article-title>. <source>Ther. Adv. Hematol.</source> <volume>2</volume>, <fpage>231</fpage>&#x2013;<lpage>247</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1177/2040620711410098</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Borman</surname> <given-names>A. M.</given-names>
</name>
<name>
<surname>Muller</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Walsh-Quantick</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Szekely</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Patterson</surname> <given-names>Z.</given-names>
</name>
<name>
<surname>Palmer</surname> <given-names>M. D.</given-names>
</name>
<etal/>
</person-group>. (<year>2020</year>). <article-title>MIC distributions for amphotericin b, fluconazole, itraconazole, voriconazole, flucytosine and anidulafungin and 35 uncommon pathogenic yeast species from the UK determined using the CLSI broth microdilution method</article-title>. <source>J. Antimicrob. Chemother.</source> <volume>75</volume>, <fpage>1194</fpage>&#x2013;<lpage>1205</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/jac/dkz568</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cleveland</surname> <given-names>A. A.</given-names>
</name>
<name>
<surname>Farley</surname> <given-names>M. M.</given-names>
</name>
<name>
<surname>Harrison</surname> <given-names>L. H.</given-names>
</name>
<name>
<surname>Stein</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Hollick</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Lockhart</surname> <given-names>S. R.</given-names>
</name>
<etal/>
</person-group>. (<year>2012</year>). <article-title>Changes in incidence and antifungal drug resistance in candidemia: results from population-based laboratory surveillance in Atlanta and Baltimore, 2008-2011</article-title>. <source>Clin. Infect. Dis.</source> <volume>55</volume> (<issue>10</issue>), <page-range>1352&#x2013;1361</page-range>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/cid/cis697</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="book">
<person-group person-group-type="author">
<collab>Clinical and Laboratory Standards Institute (M27)</collab>
</person-group> (<year>2017</year>). <source>Reference method for broth dilution antifungal susceptibility testing of yeasts</source>. <edition>4th ed</edition>. Ed. <person-group person-group-type="editor">
<name>
<surname>Wayne</surname> <given-names>P. A.</given-names>
</name>
</person-group> (<publisher-loc>USA</publisher-loc>: <publisher-name>Clinical and Laboratory Standards Institute</publisher-name>).</citation>
</ref>
<ref id="B6">
<citation citation-type="book">
<person-group person-group-type="author">
<collab>Clinical and Laboratory Standards Institute (M60)</collab>
</person-group> (<year>2017</year>). <source>Reference method for broth dilution antifungal susceptibility testing of yeasts</source>. <edition>1st ed</edition>. Ed. <person-group person-group-type="editor">
<name>
<surname>Wayne</surname> <given-names>P. A.</given-names>
</name>
</person-group> (<publisher-loc>USA</publisher-loc>: <publisher-name>Clinical and Laboratory Standards Institute</publisher-name>).</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Daniell</surname> <given-names>H. W.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Acid suppressing therapy as a risk factor for candida esophagitis</article-title>. <source>Dis. Esophagus</source> <volume>29</volume>, <fpage>479</fpage>&#x2013;<lpage>483</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/dote.12354</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Eddouzi</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Lohberger</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Vogne</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Manai</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Sanglard</surname> <given-names>D.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Identification and antifungal susceptibility of a large collection of yeast strains isolated in Tunisian hospitals</article-title>. <source>Med. Mycol.</source> <volume>51</volume>, <fpage>737</fpage>&#x2013;<lpage>746</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3109/13693786.2013.800239</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Falagas</surname> <given-names>M. E.</given-names>
</name>
<name>
<surname>Roussos</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Vardakas</surname> <given-names>K. Z.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Relative frequency of albicans and the various non-albicans candida spp among candidemia isolates from inpatients in various parts of the world: a systematic review</article-title>. <source>Int. J. Infect. Dis.</source> <volume>14</volume>, <fpage>e954</fpage>&#x2013;<lpage>e966</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.ijid.2010.04.006</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Georgiadou</surname> <given-names>S. P.</given-names>
</name>
<name>
<surname>Tarrand</surname> <given-names>J.</given-names>
</name>
<name>
<surname>Sipsas</surname> <given-names>N. V.</given-names>
</name>
<name>
<surname>Kontoyiannis</surname> <given-names>D. P.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Candiduria in haematologic malignancy patients without a urinary catheter: nothing more than a frailty marker</article-title>? <source>Mycoses</source> <volume>56</volume>, <fpage>311</fpage>&#x2013;<lpage>314</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1111/myc.12024</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hamzehee</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Kalantar-Neyestanaki</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Afshari</surname> <given-names>S. A. K.</given-names>
</name>
<name>
<surname>Mousavi</surname> <given-names>S. A. A.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Molecular identification of candida species, assessment of the antifungal susceptibility and the genetic relationship of candida albicans isolated from immunocompromised patients in kerman, Iran</article-title>. <source>Gene Rep.</source> <volume>17</volume>, <fpage>100484</fpage>. doi: <pub-id pub-id-type="doi">10.1016/j.genrep.2019.100484</pub-id>
</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kolahdoozan</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Sadjadi</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Radmard</surname> <given-names>A. R.</given-names>
</name>
<name>
<surname>Khademi</surname> <given-names>H.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>Five common cancers in Iran</article-title>. <source>Arch. Iran Med.</source> <volume>13</volume>, <fpage>143</fpage>&#x2013;<lpage>146</lpage>.</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kontoyiannis</surname> <given-names>D. P.</given-names>
</name>
<name>
<surname>Reddy</surname> <given-names>B. T.</given-names>
</name>
<name>
<surname>Torres</surname> <given-names>H. A.</given-names>
</name>
<name>
<surname>Luna</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Lewis</surname> <given-names>R. E.</given-names>
</name>
<name>
<surname>Tarrand</surname> <given-names>J.</given-names>
</name>
<etal/>
</person-group>. (<year>2002</year>). <article-title>Pulmonary candidiasis in patients with cancer: an autopsy study</article-title>. <source>Clin. Infect. Dis.</source> <volume>34</volume>, <fpage>400</fpage>&#x2013;<lpage>403</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1086/338404</pub-id>
</citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Krogh</surname> <given-names>P.</given-names>
</name>
<name>
<surname>Hald</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Holmstrup</surname> <given-names>P.</given-names>
</name>
</person-group> (<year>1987</year>). <article-title>Possible mycological etiology of oral mucosal cancer: catalytic potential of infecting Candida aibicans and other yeasts in production of N - nitrosobenzylmethylamine</article-title>. <source>Carcinogenesis</source> <volume>8</volume> <issue>(10)</issue>, <fpage>1543</fpage>&#x2013;<lpage>1548</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/carcin/8.10.1543</pub-id>
</citation>
</ref>
<ref id="B15">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lone</surname> <given-names>M. S.</given-names>
</name>
<name>
<surname>Bashir</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Bali</surname> <given-names>N.</given-names>
</name>
<name>
<surname>Sajad</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Aejaz</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Bashir</surname> <given-names>H.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>). <article-title>Oral Candida colonization and infection in cancer patients and their antifungal susceptibility in a tertiary care hospital Int</article-title>. <source>J. Adv. Res</source>. <volume>2</volume>, <page-range>541&#x2013;550</page-range>.</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mardani</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Abolghasemi</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Darvishnia</surname> <given-names>D.</given-names>
</name>
<name>
<surname>Lotfali</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Ghasemi</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Rabiei</surname> <given-names>M. M.</given-names>
</name>
<etal/>
</person-group>. (<year>2020</year>). <article-title>Oral candidiasis in hematological malignancy patients: identification and antifungal susceptibility patterns of isolates</article-title>. <source>Jundishapur J. Microbiol.</source> <volume>13</volume>, <fpage>1</fpage>&#x2013;<lpage>6</lpage>. doi: <pub-id pub-id-type="doi">10.5812/jjm.103290</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mohamed</surname> <given-names>N. A.</given-names>
</name>
<name>
<surname>Pathmanathan</surname> <given-names>S. G.</given-names>
</name>
<name>
<surname>Hussin</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Zaini</surname> <given-names>A. B.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Distribution and antifungal susceptibility pattern of candida species at a tertiary hospital in Malaysia</article-title>. <source>J. Infect. Dev. Ctries</source> <volume>12</volume>, <fpage>102</fpage>&#x2013;<lpage>108</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.3855/jidc.9634</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mroczy&#x144;ska</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Brillowska-D&#x105;browska</surname> <given-names>A.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Review on current status of echinocandins use</article-title>. <source>Antibiotics (Basel)</source> <volume>9</volume>, <elocation-id>227</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.3390/antibiotics9050227</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pappas</surname> <given-names>P. G.</given-names>
</name>
<name>
<surname>Kauffman</surname> <given-names>C. A.</given-names>
</name>
<name>
<surname>Andes</surname> <given-names>D. R.</given-names>
</name>
<name>
<surname>Clancy</surname> <given-names>C. J.</given-names>
</name>
<name>
<surname>Marr</surname> <given-names>K. A.</given-names>
</name>
<name>
<surname>Ostrosky-Zeichner</surname> <given-names>L.</given-names>
</name>
<etal/>
</person-group>. (<year>2016</year>). <article-title>Clinical practice guideline for the management of candidiasis: 2016 update by the infectious diseases society of America</article-title>. <source>Clin. Infect. Dis.</source> <volume>62</volume>, <fpage>e1</fpage>&#x2013;<lpage>50</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/cid/civ933</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pfaller</surname> <given-names>M. A.</given-names>
</name>
<name>
<surname>Andes</surname> <given-names>D. R.</given-names>
</name>
<name>
<surname>Diekema</surname> <given-names>D. J.</given-names>
</name>
<name>
<surname>Horn</surname> <given-names>D. L.</given-names>
</name>
<name>
<surname>Reboli</surname> <given-names>A. C.</given-names>
</name>
<name>
<surname>Rotstein</surname> <given-names>C.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>a). <article-title>Epidemiology and outcomes of invasive candidiasis due to non-albicans species of candida in 2,496 patients: data from the prospective antifungal therapy (PATH) registry 2004-2008</article-title>. <source>PloS One</source> <volume>9</volume>, <elocation-id>e101510</elocation-id>. doi:&#xa0;<pub-id pub-id-type="doi">10.1371/journal.pone.0101510</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pfaller</surname> <given-names>M. A.</given-names>
</name>
<name>
<surname>Espinel-Ingroff</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Bustamante</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Canton</surname> <given-names>E.</given-names>
</name>
<name>
<surname>Diekema</surname> <given-names>D. J.</given-names>
</name>
<name>
<surname>Fothergill</surname> <given-names>A.</given-names>
</name>
<etal/>
</person-group>. (<year>2014</year>b). <article-title>Multicenter study of anidulafungin and micafungin MIC distributions and epidemiological cutoff values for eight candida species and the CLSI M27-A3 broth microdilution method</article-title>. <source>Antimicrob. Agents Chemother.</source> <volume>58</volume>, <fpage>916</fpage>&#x2013;<lpage>922</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/AAC.02020-13</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pu</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Niu</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Zhang</surname> <given-names>C.</given-names>
</name>
<name>
<surname>Xu</surname> <given-names>X.</given-names>
</name>
<name>
<surname>Qin</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Huang</surname> <given-names>S.</given-names>
</name>
<etal/>
</person-group>. (<year>2017</year>). <article-title>Epidemiology, antifungal susceptibilities, and risk factors for invasive candidiasis from 2011 to 2013 in a teaching hospital in southwest China</article-title>. <source>J. Microbiol. Immunol. Infect.</source> <volume>50</volume>, <fpage>97</fpage>&#x2013;<lpage>103</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1016/j.jmii.2015.01.005</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Roy</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Sharma</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Barman</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Ch</surname> <given-names>S.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Trend of candida infection and antifungal resistance in a tertiary care hospital of north east India</article-title>. <source>Afr. J. Microbiol. Res.</source> <volume>7</volume>, <fpage>3112</fpage>&#x2013;<lpage>3116</lpage>. doi: <pub-id pub-id-type="doi">10.5897/AJMR12.2257</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shah</surname> <given-names>M. D. N.</given-names>
</name>
<name>
<surname>Cavanagh</surname> <given-names>Y.</given-names>
</name>
<name>
<surname>Shulik</surname> <given-names>O.</given-names>
</name>
<name>
<surname>Patel</surname> <given-names>P.</given-names>
</name>
<name>
<surname>DeBari</surname> <given-names>V. A.</given-names>
</name>
<name>
<surname>Baddoura</surname> <given-names>W.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Proton pump inhibitors and corticosteroids as synergistic risk factors for candida esophagitis</article-title>. <source>J. Adv. Med. Med. Res.</source> <volume>10</volume>, <fpage>1</fpage>&#x2013;<lpage>6</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.9734/BJMMR/2015/20171</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sharifynia</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Badali</surname> <given-names>H.</given-names>
</name>
<name>
<surname>Sharifi Sorkherizi</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Shidfar</surname> <given-names>M. R.</given-names>
</name>
<name>
<surname>Hadian</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Shahrokhi</surname> <given-names>S.</given-names>
</name>
<etal/>
</person-group>. (<year>2016</year>). <article-title>
<italic>In vitro</italic> antifungal susceptibility profiles of candida albicans complex isolated from patients with respiratory infections</article-title>. <source>Acta Med. Iran</source> <volume>54</volume>, <fpage>376</fpage>&#x2013;<lpage>381</lpage>.</citation>
</ref>
<ref id="B26">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Silva</surname> <given-names>G.</given-names>
</name>
<name>
<surname>Bernardi</surname> <given-names>T. L.</given-names>
</name>
<name>
<surname>Schaker</surname> <given-names>P. D. C.</given-names>
</name>
<name>
<surname>Menegotto</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Valente</surname> <given-names>P.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Rapid yeast DNA extraction by boiling and freeze-thawing without using chemical reagents and DNA purification</article-title>. <source>Braz. Arch. Biol. Technol.</source> <volume>55</volume>, <fpage>319</fpage>&#x2013;<lpage>327</lpage>. doi: <pub-id pub-id-type="doi">10.1590/S1516-89132012000200020</pub-id>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Spiess</surname> <given-names>B.</given-names>
</name>
<name>
<surname>Seifarth</surname> <given-names>W.</given-names>
</name>
<name>
<surname>Hummel</surname> <given-names>M.</given-names>
</name>
<name>
<surname>Frank</surname> <given-names>O.</given-names>
</name>
<name>
<surname>Fabarius</surname> <given-names>A.</given-names>
</name>
<name>
<surname>Zheng</surname> <given-names>C.</given-names>
</name>
<etal/>
</person-group>. (<year>2007</year>). <article-title>DNA Microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients</article-title>. <source>J. Clin. Microbiol.</source> <volume>45</volume>, <fpage>3743</fpage>&#x2013;<lpage>3753</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1128/JCM.00942-07</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tan</surname> <given-names>T. Y.</given-names>
</name>
<name>
<surname>Hsu</surname> <given-names>L. Y.</given-names>
</name>
<name>
<surname>Alejandria</surname> <given-names>M. M.</given-names>
</name>
<name>
<surname>Chaiwarith</surname> <given-names>R.</given-names>
</name>
<name>
<surname>Chinniah</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Chayakulkeeree</surname> <given-names>M.</given-names>
</name>
<etal/>
</person-group>. (<year>2016</year>). <article-title>Antifungal susceptibility of invasive candida bloodstream isolates from the Asia-pacific region</article-title>. <source>Med. Mycol.</source> <volume>54</volume>, <fpage>471</fpage>&#x2013;<lpage>477</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1093/mmy/myv114</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Walsh</surname> <given-names>T. J.</given-names>
</name>
<name>
<surname>Gamaletsou</surname> <given-names>M. N.</given-names>
</name>
</person-group> (<year>2013</year>). <article-title>Treatment of fungal disease in the setting of neutropenia</article-title>. <source>Hematol. Am. Soc. Hematol. Educ. Program</source> <volume>2013</volume>, <fpage>423</fpage>&#x2013;<lpage>427</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1182/asheducation-2013.1.423</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>White</surname> <given-names>T. J.</given-names>
</name>
<name>
<surname>Bruns</surname> <given-names>T.</given-names>
</name>
<name>
<surname>Lee</surname> <given-names>S.</given-names>
</name>
<name>
<surname>Taylor</surname> <given-names>J.</given-names>
</name>
</person-group> (<year>1990</year>). <article-title>Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics</article-title>. <source>PCR protocols: guide to Methods applications</source> <volume>18</volume>, <fpage>315</fpage>&#x2013;<lpage>322</lpage>. doi: <pub-id pub-id-type="doi">10.1016/B978-0-12-372180-8.50042-1</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yapar</surname> <given-names>N.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Epidemiology and risk factors for invasive candidiasis</article-title>. <source>Ther. Clin. Risk Manage.</source> <volume>10</volume>, <fpage>95</fpage>&#x2013;<lpage>105</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.2147/TCRM.S40160</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>