Abstract
Periodontitis and peri-implantitis are chronic inflammatory diseases which are primarily driven by excessive and dysregulated immune responses. This would result in irreversible tissue destruction around teeth and implants. Although the microbiome serves as an initiator of inflammation and leads to microbial dysbiosis, persistent and unresolved inflammation is the primary driver of tissue and bone loss. These conditions result from a dynamic interplay between the host immune response and pathogenic biofilms. Microbial dysbiosis results from a shift from a eubiotic (symbiotic) oral microbiome to a dysbiotic microbial community. This is initiated by excessive inflammation and manipulates host immunity to promote chronic inflammation. Concurrently, immune dysregulation, including imbalances in innate and adaptive immune responses that result from a failure of resolution of inflammation pathways, exacerbates tissue destruction through the overproduction of pro-inflammatory cytokines and the activation of destructive pathways, such as neutrophil-mediated degradation and osteoclast activation. This review explores the mechanisms underlying microbial dysbiosis and immune dysregulation in periodontitis and peri-implantitis, emphasizing their contribution to inflammation, bone resorption, and disease progression.
Introduction
Periodontitis and peri-implantitis are chronic inflammatory and immune mediated diseases that are characterized by microbial dysbiosis and immune dysregulation (). Both diseases result in destruction of the supporting structures around natural teeth or dental implants (alveolar bone loss). If left untreated, they can result in tooth or implant loss. The prevalence of periodontitis in dentate adults 30 years or older in US is estimated to be 42.00% (). In comparison, the prevalence of peri-implantitis is estimated 19.53%at the patient level and 12.53%at the implant level ().
Bacteria are the initial etiologic factor in both periodontitis and peri-implantitis, which results in inflammation (gingivitis) that if severe and long-lasting leads to microbiome dysbiosis. Microbial dysbiosis is an imbalance in the composition and diversity of the oral microbiome that perpetuates and exacerbates the development and progression of both periodontitis and peri-implantitis. This shift from a healthy, eubiotic microbial community to a dysbiotic, pathogenic community, leads to changes in host–microbe crosstalk, triggering excessive inflammatory responses and bone loss (; ; ). Although microbial dysbiosis plays a crucial role in disease etiology, immune dysregulation is the key contributor to pathogenesis and tissue destruction. The biofilm triggers an excessive immune response that is initially protective but becomes maladaptive as it progresses toward chronic inflammation. According to the literature, the disease is not caused solely by microbial dysbiosis or the host immune response alone; rather, it results from a combination of both. However, the precise role and relative contribution of these factors each remain poorly understood (; ).
The classical understanding of periodontitis as a disease caused by specific pathogenic bacteria has evolved and evidence suggests that periodontitis and peri-implantitis are not simply infections caused by a few select microorganisms but are instead manifestations of a complex interplay between the subgingival microbiota and the host immune response. While bacteria are indeed essential for disease initiation, as demonstrated by the reversal of gingivitis following plaque removal and bone loss prevention in germ-free animals, the onset of periodontitis is now understood to involve microbial dysbiosis rather than the acquisition of new pathogens. Dysbiosis is driven by changes in the local environment like the host’s inflammatory response (). Studies show that actively resolving inflammation can reverse dysbiosis and restore tissue integrity, highlighting the bidirectional relationship between host and microbiota (; ).
Current evidence strongly suggests periodontitis is not merely an infectious condition caused by specific pathogens but rather an inflammatory disease driven by dysregulated host immune responses to microbial dysbiosis. The persistent inflammation and subsequent tissue destruction are primarily immune-mediated, emphasizing the critical role of inflammation resolution pathways in disease management.
This review aims to provide an overview of the pathogenic mechanisms underlying periodontitis and peri-implantitis, with a specific focus on the role of immune dysregulation and the resulting microbial dysbiosis.
Periodontitis
Microbial dysbiosis in periodontitis
The transition from a healthy, eubiotic oral microbiome to a dysbiotic, disease-provoking microbial community is the main feature in the initiation of pathogenesis of periodontitis (). Although it is initially triggered by microbial biofilms, the transition to dysbiosis in periodontitis is largely facilitated by the host’s inflammatory environment. This inflammation driven dysbiosis selects for pathogenic microbial species capable of thriving under conditions of chronic inflammation, thereby perpetuating immune dysregulation rather than causing direct infection.
In a healthy state, the oral microbiome maintains a eubiotic relationship with the host in a stable and balanced ecosystem. This balance supports periodontal health by regulating microbial diversity and limiting pathogenic overgrowth. The gingival microbiome associated with periodontal health remains in dynamic equilibrium with the host, supporting oral health. However, this balance is disrupted during the progression to gingivitis and leads to dysbiosis in the progression to periodontitis. While gingivitis is a reversible inflammatory condition that reflects a state of microbial/host homeostasis, chronic and uncontrolled inflammation drives a shift in the microbial community, that results in the irreversible destruction of hard and soft tissues (Figure 1). The key unresolved question is why and how healthy gingival tissue progresses to gingivitis and, ultimately, periodontitis. For many years the main focus was on the disease associated bacteria, which constitute a minor part of the subgingival microbiome in health and increase significantly as periodontal pockets form, and periodontitis develops. This microbial shift is accompanied by an increase in anaerobic gram-negative bacteria, leading to a pathogenic synergy that exacerbates host tissue destruction (; ).
Figure 1
Based on these facts, it was supposed that there are some specific bacteria that are the main cause of the disease, and if they are present in the microbiome around the tooth, the healthy periodontium would develop gingivitis and later periodontitis. This was the main idea for the keystone pathogen hypothesis. It suggested that certain low-abundance microbial species play an important role in disease progression by orchestrating shifts in the microbial community and inducing host immune dysregulation, and in the context of periodontitis, Porphyromonas gingivalis is a suggested keystone pathogen. Despite low abundance within the oral microbiome, P. gingivalis exerts a significant influence on microbial community structure and host immunity (
Based on this idea, it was suggested that the microbiome associated with the periodontitis is an overgrowth of select commensals termed pathobionts (
The literature supports the fact that the main etiology for gingivitis is bacterial challenge, and removal of the plaque results in reestablishment of healthy conditions (
Subsequent research has shown that disease development cannot be explained simply by the presence of a few specific bacterial species, even though the microbiome composition does change. The original keystone-pathogen hypothesis which suggests that a single microbe could dominate and trigger disease, has given way to a broader view that the entire microbial community must be considered. Once this community becomes dysbiotic, it can push the periodontium toward disease; however, that shift involves the collective community, not just one bacterial species. Still, this perspective does not fully answer the lingering question of “who is responsible?” because many microbes found in dysbiotic sites also appear in periodontally healthy individuals and even if this is the main reason, why does this change in the microbiome happen. To resolve this dilemma, we may need to shift our focus to the other side of the battlefield, the host periodontium itself.
Increasing inflammation in the host environment selects for specific bacterial species based on their growth requirements. As inflammation increases beyond normal levels, it fosters conditions that preferentially support the proliferation of gram-negative and proteolytic bacterial populations. Once established, these bacteria actively amplify and perpetuate the inflammatory response, further enriching their niche with tissue breakdown products. Consequently, a self-sustaining cycle emerges, wherein inflammation and bacterial overgrowth reinforce each other, this enables these selected bacterial groups to maintain their selective dominance within the inflamed environment (
While the inflammatory response is a protective mechanism against pathogens, it can have adverse consequences when excessive or chronic (
So maybe we have found an answer to our initial question and inflammation is the underlying driver of the disease. As mentioned earlier, prolonged and uncontrolled inflammation is the issue and not surprisingly many other chronic disorders share the same underlying pathology. In fact, persistent, unresolved inflammation plays a central role in these disease such as type 2 diabetes, cardiovascular disease, and rheumatoid arthritis (
To address this question, we need to understand what defines the endpoint of inflammation and what it truly means for inflammation to be uncontrolled. Is there a biological mechanism responsible for resolving inflammation and restoring tissue homeostasis?
For many years, it was believed that homeostasis simply returned once inflammation subsided, making resolution a passive consequence of an inflammation free state. We now know, however, that resolving inflammation is an active, highly regulated process driven by specialized pro-resolving mediators (SPMs). These molecules are the principal agents of resolution: they orchestrate the shutdown of inflammatory pathways and restore tissue balance. Although SPMs are produced endogenously, their levels decline rapidly with age, which may partly explain why chronic inflammatory diseases become more prevalent later in life. Unlike anti-inflammatory medications such as NSAIDs, which block inflammation, SPMs “shift” the inflammation status toward resolution. Under these conditions, tissue regeneration is promoted, and homeostasis is restored. Moreover, SPMs modify the microbiome’s response to inflammation, an effect that NSAIDs cannot achieve (
In contrast to the earlier belief that a single “superstar” pathogen drives periodontal diseases, the story involves several actors—a dysbiotic microbiome, dysregulated inflammation, and impaired resolution pathways. Yet a central mystery persists: why does a once-healthy periodontium begin to deteriorate? Why does the process remain limited to gingivitis in some individuals but progress to periodontitis in others? Who enters the stage first, and in what sequence do the other players appear—or do they all act simultaneously? These questions remain unanswered and require further research. Thus, we need to focus on the different aspects of periodontal diseases pathogenesis.
Role of innate and adaptive immunity in periodontitis
Although the innate and adaptive immune systems are essential for periodontal defense, their sustained activation becomes maladaptive, driving chronic inflammation and tissue destruction characteristic of periodontitis. This pathological immune activity, rather than direct actions of bacteria, leads to irreversible bone and tissue loss.
The innate immune system serves as the first line of defense against periodontal pathogens. It comprises various immune cells, including macrophages, neutrophils, and dendritic cells, which recognize and respond to microbial invaders through pattern recognition receptors (PRRs), such as Toll-like receptors (TLRs) (
On the other hand, the adaptive immune system provides a more targeted and durable response, involving T and B lymphocytes. These cells are critical for immunological memory and antibody production. In periodontitis, CD4+ T-helper cells, particularly the Th1 and Th17 subsets, are essential to drive inflammatory responses and contribute to bone resorption (
The gingivitis stages described by Page and Schroeder (
Figure 2

Immune response across periodontal lesion stages. The figure shows how innate and adaptive immune responses evolve from health to gingivitis and periodontitis. The initial lesion is dominated by neutrophil-driven innate immunity. In the early lesion, APCs and T cells signal the onset of adaptive responses. The established lesion features plasma cell dominance and collagen breakdown. In the advanced lesion, pocket formation, heavy neutrophil infiltration, plasma cells, and osteoclast activity drive irreversible tissue and bone destruction (
The early lesion follows, marked by visible clinical signs of gingivitis and dominated by lymphocytes (primarily T cells). If the disease advances, an established lesion develops, characterized by plasma-cell dominance. Although innate and adaptive immune mechanisms operate throughout these three stages, all are still considered gingivitis, reversible inflammation. If the inflammation continues, the process enters the advanced lesion stage. Here, the lesion involves the alveolar bone, periodontitis begins, and the disease becomes chronic. Neutrophils dominate the epithelium, and tissue damage is driven largely by the host inflammatory response rather than the biofilm itself.
The transition from stage 3 to stage 4 is a critical checkpoint: the shift from acute to chronic inflammation makes damage irreversible. While both biofilm and host response contribute to disease progression, controlling and resolving inflammation is pivotal. Notably, in the initial stage, biofilm and an acute inflammatory response coexist in individuals who remain clinically healthy. This demonstrates that their mere presence is not inherently pathogenic. Even if early stages progress, stages 2 and 3 remain reversible so proper regulation can prevent progression to the advanced lesion.
The dysregulation of immune pathways and cytokine networks
The defining feature of periodontitis is the dysregulated immune response, the excessive and persistent production of pro-inflammatory cytokines and the failure of resolution of inflammation pathways, which not only perpetuates inflammation but directly mediates tissue and bone destruction independent of ongoing microbial stimulation. One of the key features of immune dysregulation in periodontitis is the imbalance between pro-inflammatory and anti-inflammatory cytokines. Pro-inflammatory cytokines, such as TNF- α, IL-1 β, and IL-6, are produced in response to bacterial infection and are crucial for initiating the inflammatory response (
Mechanisms of tissue destruction mediated by the immune system
The destruction observed in periodontitis primarily arises from dysregulated immune pathways, where pro-inflammatory mediators and immune cell-derived enzymes, rather than bacteria themselves, cause direct tissue breakdown. The immune system, intended to protect periodontal tissues, paradoxically becomes the main driver of periodontal destruction.
One of the primary mechanisms of tissue destruction in periodontitis is the overproduction of pro-inflammatory cytokines. Cytokines such as IL-1 βand TNFα are released in response to periodontal pathogens, leading to an inflammatory cascade that promotes tissue breakdown (
Another critical factor in tissue destruction is the role of neutrophils. In periodontitis, neutrophils are recruited to the site of infection and become activated, leading to the release of reactive oxygen species (ROS) and various tissue-damaging enzymes, such as collagenase and elastase (
Developmental endothelial locus-1 (DEL-1) is secreted by endothelial cells and has the capacity to regulate immune functions and play a role in inflammatory processes (
Preclinical evidence also indicates that DEL-1 acts as an endogenous regulator of neuroinflammation within the central nervous system. It restricts leukocyte adhesion, preserves blood–brain barrier integrity, and limits IL-17–driven inflammatory cascades. Reduced DEL-1 levels correlate with heightened inflammation and disease severity, whereas systemic administration of a DEL-1–Fc fusion protein ameliorates disease relapse severity. Collectively, these findings highlight DEL-1’s therapeutic potential in maintaining CNS immune homeostasis and mitigating pathogenic inflammatory responses with broad therapeutic potential across inflammatory conditions (
As noted earlier, the hallmark consequence of periodontitis is alveolar bone resorption and it results primarily from dysregulated immune pathways rather than from the mere presence of biofilm or inflammation itself. This underscores the importance of controlling and properly regulating the inflammatory response. SPMs are of particular interest because they both prevent further tissue destruction and promote repair once deemed irreversible.
In a rabbit model of ligature-induced periodontitis with P. gingivalis, topical application of Resolvin E1 resolved inflammation and produced measurable bone gain. This highlights SPMs’ ability to regenerate bone while dampening destructive inflammation (
The role of SPMs and their downstream effects have been studied in clinical trials as well. In a randomized clinical trial,
Peri-implantitis
Microbial dysbiosis in peri-implantitis
Studies have shown that the microbial communities associated with peri-implant biofilms are often dominated by specific pathogens that are also implicated in periodontal diseases. For instance, P. gingivalis and Fusobacterium nucleatum are frequently identified in biofilms from peri-implantitis sites (
The evidence does not demonstrate a consistent specific microbial profile for peri-implantitis. While certain bacterial species, such as P. gingivalis, F. nucleatum, Tannerella forsythia, and Aggregatibacter actinomycetemcomitans, are frequently associated with peri-implantitis, their presence is not exclusive to the condition and can also be found in periodontitis and even in healthy sites to varying extents. Additionally, Staphylococcus epidermidis, a species less commonly associated with natural teeth, is often detected in peri-implantitis cases. Interestingly, S. epidermidis has been found to colonize peri-implant tissues rather than implant surfaces, suggesting a potential role in infections involving free-floating (planktonic) bacteria. Given its established involvement in planktonic infections of biomaterials, S. epidermidis might contribute to a distinct form of peri-implantitis, differing from the conventional type associated with red and orange complex bacteria. Additionally, studies reveal considerable variability in microbial composition between individuals and across different studies, with no single species consistently characterizing peri-implantitis. This heterogeneity highlights the complexity of peri-implant biofilms and the influence of host and environmental factors on microbial communities (
Immune responses in peri-implantitis
As in periodontitis, the host immune system reacts to peri-implant biofilms by recognizing microbial components through receptors such as Toll-like receptors (TLRs). This recognition initiates a cascade of inflammatory responses, leading to the release of cytokines like IL-1β, IL-6, and TNFα, which recruit immune cells such as neutrophils and macrophages to the site. These cells amplify the response by producing more inflammatory mediators, enzymes, and chemokines. While this response is meant to control the microbial threat, its dysregulation often leads to persistent inflammation, tissue damage, and ultimately bone loss around implants (
Although peri-implantitis and periodontitis share similarities as biofilm-induced inflammatory diseases, they exhibit differences in immune response intensity and cellular involvement. Peri-implantitis generally presents a more exaggerated inflammatory response with increased levels of cytokines like IL-17 and greater recruitment of neutrophils. This heightened immune activity reflects a more aggressive environment compared to periodontitis. Additionally, peri-implantitis is marked by an imbalance between T helper 17 (Th17) cells and regulatory T cells (Tregs), which exacerbates inflammation. Conversely, periodontitis often shows a relatively more balanced Th17/Treg dynamic, though it still involves chronic inflammation. The unique structural and material properties of implants may also contribute to the differences in immune response (
Role of inflammation and bone resorption in peri-implantitis
Inflammation plays a central role in peri-implantitis by driving tissue and bone destruction. Pro-inflammatory cytokines such as IL-6 and TNF -α stimulate osteoclast activity through the RANK/RANKL pathway, accelerating bone resorption. The persistent inflammation, fueled by a dysbiotic biofilm, undermines the peri-implant tissues’ ability to repair, leading to progressive bone loss and compromised implant stability. This destructive process differentiates peri-implantitis as a more aggressive and complex condition compared to other inflammatory oral diseases (
Potential role of foreign body reactions in peri-implantitis
Foreign body reactions play a modulatory, but not primary, role in the pathogenesis of peri-implantitis and the role of these reactions in peri-implantitis is increasingly recognized alongside biofilm-mediated inflammation. From osteoimmunology point of view, osseointegration itself is a controlled foreign body equilibrium, in which the immune system and macrophage polarization pathways continuously “shield off” the titanium surface to maintain functional integration (
When this equilibrium is disturbed, chronic inflammation may transition toward a maladaptive foreign body response characterized by persistent M1-type activation, impaired resolution, and susceptibility to marginal bone loss. A growing body of evidence shows that titanium particles and ions accumulate in peri-implant tissues and the concentration is significantly increased in peri-implantitis site (
Host genetic factors
Periodontitis and peri-implantitis are multifactorial diseases and result from the interaction of microbial dysbiosis, environmental exposures, and host-related factors (
Conclusion
Interplay between microbial dysbiosis and immune dysregulation
Although microbial dysbiosis is associated with the amplification and perpetuation of the inflammatory cascade, the hallmark of periodontitis and peri-implantitis progression is a sustained dysregulation of immune responses. Rather than the presence of pathogens, failure to resolve inflammation is what drives ongoing tissue destruction.
The microbial component is considered the initial starting point for these diseases, although its role is not fully understood. All cases of the disease have a microbial component present in the oral cavity. However, the presence of the microbiome does not necessarily induce periodontal diseases, as microbial components thought to be pathogenic can also be detected in healthy individuals. On the other hand, the role of the host immune system is critical. The microbial component acts as a trigger for the destructive process, but it is the host immune system that causes the actual destruction of periodontal and peri-implant tissue. While the exact mechanisms and interplay between the microbiome and the host immune system remain unclear, it is evident that tissue destruction primarily results from the host immune response. The inability of the immune system to eliminate the infection, combined with the uncontrolled activity of the immune system, leads to progressive tissue damage.
The reason behind this phenomenon is still not fully understood. However, if the body’s immune system cannot eliminate the infection and resolve the initial inflammation caused by the microbial component, the inflammation becomes chronic, resulting in tissue destruction through mechanisms such as neutrophil-mediated damage. A key factor in this process is the failure of the immune system to resolve inflammation. Inflammation is typically a protective response, but it may lose its protective nature when it becomes chronic and uncontrolled, which leads to further damage. Contrary to the old belief that inflammation resolution occurs passively once inflammation subsides, it is now clear that resolution is an active process, and SPMs play a crucial role in this process.
The resolution of inflammation is an intriguing area of study, as SPMs not only resolve inflammation but also heal diseased tissue and promote regeneration. The exact mechanisms of periodontal and peri-implant disease initiation and progression are coming into focus. It can be concluded that the failure to resolve inflammation is a critical factor. While questions still exist, SPMs have shown a promising role in restoring homeostasis and promoting bone regeneration, offering hope for new therapeutic approaches in managing periodontitis and peri-implantitis.
Statements
Author contributions
NM: Data curation, Validation, Methodology, Conceptualization, Visualization, Investigation, Writing – original draft, Writing – review & editing, Software, Formal Analysis. TV: Conceptualization, Supervision, Project administration, Funding acquisition, Resources, Validation, Methodology, Visualization, Investigation, Writing – review & editing.
Funding
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Conflict of interest
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Summary
Keywords
dysbiosis, immune dysregulaiton, peri - implantitis, periodonditis, periodontal disease
Citation
Mehrnia N and Van Dyke TE (2026) Microbial dysbiosis and immune dysregulation in periodontitis and peri-implantitis. Front. Cell. Infect. Microbiol. 15:1678163. doi: 10.3389/fcimb.2025.1678163
Received
26 August 2025
Revised
12 December 2025
Accepted
15 December 2025
Published
07 January 2026
Volume
15 - 2025
Edited by
Bastiaan P Krom, VU Amsterdam, Netherlands
Reviewed by
Rajendra Prasad Settem, University at Buffalo, United States
Sigrun Eick, University of Bern, Switzerland
Marja Laine, VU Amsterdam, Netherlands
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© 2026 Mehrnia and Van Dyke.
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*Correspondence: Thomas E Van Dyke, tvandyke@forsyth.org
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