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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1134659</article-id>
<article-id pub-id-type="doi">10.3389/fgene.2023.1134659</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>General Commentary</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Commentary: Association between the <italic>miR-146a</italic> rs2910164 polymorphism and childhood acute lymphoblastic leukemia susceptibility in an Asian population</article-title>
<alt-title alt-title-type="left-running-head">Navabi</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2023.1134659">10.3389/fgene.2023.1134659</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Navabi</surname>
<given-names>Abbas</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2097787/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Medical Biotechnology</institution>, <institution>School of Medical Sciences</institution>, <institution>Kermanshah University of Medical Sciences</institution>, <addr-line>Kermanshah</addr-line>, <country>Iran</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Student Research Committee</institution>, <institution>School of Medical Sciences</institution>, <institution>Kermanshah University of Medical Sciences</institution>, <addr-line>Kermanshah</addr-line>, <country>Iran</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1569815/overview">Elixabet Lopez-Lopez</ext-link>, University of the Basque Country, Spain</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/463282/overview">Sinem Firtina</ext-link>, University of Istinye, T&#xfc;rkiye</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Abbas Navabi, <email>abbasnavabi226@gmail.com</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Statistical Genetics and Methodology, a section of the journal Frontiers in Genetics</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>20</day>
<month>03</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>14</volume>
<elocation-id>1134659</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>06</day>
<month>03</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Navabi.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Navabi</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<related-article id="RA1" related-article-type="commentary-article" journal-id="Front. Genet." journal-id-type="nlm-ta" xlink:href="10.3389/fgene.2020.00886" ext-link-type="doi">A Commentary on <article-title>Association between the <italic>miR-146a</italic> rs2910164 polymorphism and childhood acute lymphoblastic leukemia susceptibility in an Asian population</article-title> by Zou D, Yin J, Ye Z, Zeng Q, Tian C, Wang Y, Chen Q and Chen R (2020). Front. Genet. 11:886. doi: <object-id>10.3389/fgene. 2020.00886</object-id>
</related-article>
<kwd-group>
<kwd>ALL</kwd>
<kwd>miR-146a</kwd>
<kwd>rs2910164</kwd>
<kwd>Asian population</kwd>
<kwd>meta-analysis</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>I read with great interest the valuable article titled &#x201c;Association between the <italic>miR-146a</italic> Rs2910164 Polymorphism and Childhood Acute Lymphoblastic Leukemia Susceptibility in an Asian Population&#x201d; published in the October 2020 edition of the journal (<xref ref-type="bibr" rid="B7">Zou et al., 2020</xref>). The authors included six studies based on their inclusion criteria. Their main finding indicated that the CC genotype significantly increased the risk of childhood acute lymphoblastic leukemia (ALL) in the additive model (CC vs. GG: OR &#x3d; 1.598; 95% CI: 1.003&#x2013;2.545; <italic>p</italic> &#x3d; 0.049). Also, the dominant model, recessive model, and allele model indicated a trend of increasing risk for childhood ALL. However, there are some issues in the data extraction and meta-analysis that affect the results and must be noticed. Here, I aim to comment on the issues and provide accurate results through conducting a new meta-analysis. First, in Devanandan&#x2019;s study, the genotyping method has been incorrectly recorded (<xref ref-type="bibr" rid="B3">Jemimah Devanandan et al., 2019</xref>). Second, in Xue&#x2019;s study and Pei&#x2019;s study, the frequency of the GG genotype has been defined as the frequency of the CC genotype and the frequency of the G allele has been defined as the frequency of the C allele, and <italic>vice versa</italic> (<xref ref-type="bibr" rid="B6">Xue et al., 2019</xref>; <xref ref-type="bibr" rid="B5">Pei et al., 2020</xref>). This has caused mistakes in statistical analysis and result interpretation. Third, in Pei&#x2019;s study, all the participants were Taiwanese, not Taiwanese and Chinese (<xref ref-type="bibr" rid="B5">Pei et al., 2020</xref>). Therefore, in order to correct the findings of the meta-analysis by <xref ref-type="bibr" rid="B7">Zou et al. (2020)</xref>, I used STATA 17.0 and CMA 3.0 software applications to conduct a meta-analysis based on the information reported in the original studies.</p>
</sec>
<sec id="s2">
<title>2 Results of my current meta-analysis</title>
<p>I present the correct characteristics of the included studies in <xref ref-type="table" rid="T1">Table 1</xref> (<xref ref-type="bibr" rid="B2">Hasani et al., 2014</xref>; <xref ref-type="bibr" rid="B1">Chansing et al., 2016</xref>; <xref ref-type="bibr" rid="B4">Liu et al., 2018</xref>; <xref ref-type="bibr" rid="B3">Jemimah Devanandan et al., 2019</xref>; <xref ref-type="bibr" rid="B6">Xue et al., 2019</xref>; <xref ref-type="bibr" rid="B5">Pei et al., 2020</xref>). Based on the heterogeneity results of the meta-analysis of the association between rs2910164 and childhood ALL, except for the recessive model, the random effects model was used for meta-analysis. I obtained a pooled OR of 1.24 (95% CI: 0.96&#x2013;1.59; <italic>p</italic> &#x3d; 0.09) for the C allele in the allele model, 1.59 (95% CI: 0.99&#x2013;2.55; <italic>p</italic> &#x3d; 0.05) for the CC &#x2b; CG genotype in the dominant model, 1.05 (95% CI: 0.90&#x2013;1.21; <italic>p</italic> &#x3d; 0.53) for the CC genotype in the recessive model, and 1.68 (95% CI: 0.97&#x2013;2.90; <italic>p</italic> &#x3d; 0.06) for the CC genotype in the additive model (<xref ref-type="fig" rid="F1">Figure 1</xref> and <xref ref-type="sec" rid="s7">Supplementary Table S1</xref>). In all models, there was no significant association between the rs2910164 polymorphism and childhood ALL risk. Based on sensitivity analysis, removing the studies one by one from the included list showed that when Xue&#x2019;s study is removed, the overall effect size of the different models changes significantly. Also, when Devanandan&#x2019;s study is removed, the overall effect size of the dominant model changes significantly (<xref ref-type="sec" rid="s7">Supplementary Figure S1</xref> and <xref ref-type="sec" rid="s7">Supplementary Table S2</xref>). According to the results of the funnel plot, Begg&#x2019;s test, and Egger&#x2019;s test, no publication bias was observed (<xref ref-type="sec" rid="s7">Supplementary Figure S2</xref> and <xref ref-type="sec" rid="s7">Supplementary Table S3</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Characteristics of six studies included in the present meta-analysis.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="3" align="center">SNP</th>
<th rowspan="3" align="left">First author-year</th>
<th rowspan="3" align="left">Country</th>
<th rowspan="3" align="left">Continent</th>
<th rowspan="3" align="left">Genotyping method</th>
<th rowspan="2" colspan="2" align="left">Sample size</th>
<th colspan="10" align="center">Genotype and allele distribution</th>
</tr>
<tr>
<th colspan="5" align="center">Case</th>
<th colspan="5" align="center">Control</th>
</tr>
<tr>
<th align="left">Case</th>
<th align="left">Control</th>
<th align="left">GG</th>
<th align="left">CG</th>
<th align="left">CC</th>
<th align="left">G</th>
<th align="left">C</th>
<th align="left">GG</th>
<th align="left">CG</th>
<th align="left">CC</th>
<th align="left">G</th>
<th align="left">C</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="6" align="center">rs2910164</td>
<td align="left">Devanandan-2019</td>
<td align="left">India</td>
<td align="left">Asian</td>
<td align="left">TaqMan</td>
<td align="left">71</td>
<td align="left">74</td>
<td align="left">27</td>
<td align="left">32</td>
<td align="left">12</td>
<td align="left">86</td>
<td align="left">56</td>
<td align="left">25</td>
<td align="left">37</td>
<td align="left">12</td>
<td align="left">87</td>
<td align="left">61</td>
</tr>
<tr>
<td align="left">Hasani-2014</td>
<td align="left">Iran</td>
<td align="left">Asian</td>
<td align="left">T-ARMS-PCR</td>
<td align="left">75</td>
<td align="left">97</td>
<td align="left">7</td>
<td align="left">46</td>
<td align="left">22</td>
<td align="left">60</td>
<td align="left">90</td>
<td align="left">27</td>
<td align="left">50</td>
<td align="left">20</td>
<td align="left">104</td>
<td align="left">90</td>
</tr>
<tr>
<td align="left">Xue-2019</td>
<td align="left">China</td>
<td align="left">Asian</td>
<td align="left">SNaPshot</td>
<td align="left">831</td>
<td align="left">1,079</td>
<td align="left">139</td>
<td align="left">429</td>
<td align="left">263</td>
<td align="left">707</td>
<td align="left">955</td>
<td align="left">169</td>
<td align="left">541</td>
<td align="left">369</td>
<td align="left">879</td>
<td align="left">1,279</td>
</tr>
<tr>
<td align="left">Chansing-2016</td>
<td align="left">Thailand</td>
<td align="left">Asian</td>
<td align="left">PCR-RFLP</td>
<td align="left">100</td>
<td align="left">200</td>
<td align="left">11</td>
<td align="left">54</td>
<td align="left">35</td>
<td align="left">76</td>
<td align="left">124</td>
<td align="left">31</td>
<td align="left">96</td>
<td align="left">73</td>
<td align="left">158</td>
<td align="left">242</td>
</tr>
<tr>
<td align="left">Pei-2020</td>
<td align="left">Taiwan</td>
<td align="left">Asian</td>
<td align="left">PCR-RFLP</td>
<td align="left">266</td>
<td align="left">266</td>
<td align="left">29</td>
<td align="left">125</td>
<td align="left">112</td>
<td align="left">183</td>
<td align="left">349</td>
<td align="left">59</td>
<td align="left">117</td>
<td align="left">90</td>
<td align="left">235</td>
<td align="left">297</td>
</tr>
<tr>
<td align="left">Liu-2018</td>
<td align="left">China</td>
<td align="left">Asian</td>
<td align="left">PCR-RFLP</td>
<td align="left">200</td>
<td align="left">100</td>
<td align="left">32</td>
<td align="left">89</td>
<td align="left">79</td>
<td align="left">153</td>
<td align="left">247</td>
<td align="left">29</td>
<td align="left">41</td>
<td align="left">30</td>
<td align="left">99</td>
<td align="left">101</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Forest plots for the allele <bold>(A)</bold>, additive <bold>(B)</bold>, dominant <bold>(C)</bold>, and recessive <bold>(D)</bold> models of the relationship between the miR-146a rs2910164 polymorphism and the risk of childhood acute lymphoblastic leukemia.</p>
</caption>
<graphic xlink:href="fgene-14-1134659-g001.tif"/>
</fig>
</sec>
<sec sec-type="conclusion" id="s3">
<title>3 Conclusion</title>
<p>I conducted a meta-analysis based on information derived from six studies included in the meta-analysis by <xref ref-type="bibr" rid="B7">Zou et al. (2020)</xref> to assess the efficacy of the miR-146a rs2910164 polymorphism on childhood ALL risk. According to analysis, there was no significant association between the rs2910164 polymorphism and childhood ALL in all models. Based on sensitivity analysis after removing Xue&#x2019;s study, childhood ALL risk was significantly increased in allele (C vs. G), additive (CC vs. GG), dominant (CC &#x2b; CG vs. GG), and recessive (CC vs. CG &#x2b; GG) models. Also, after removing Devanandan&#x2019;s study, childhood ALL risk was significantly increased in the dominant model (CC &#x2b; CG vs. GG). The results of the funnel plots, Egger&#x2019;s test, and Begg&#x2019;s test suggested that there is no obvious publication bias.</p>
</sec>
</body>
<back>
<sec id="s4">
<title>Author contributions</title>
<p>AN designed the research, performed the statistical analysis, and wrote the manuscript. AN took primary responsibility for the final content.</p>
</sec>
<sec sec-type="COI-statement" id="s5">
<title>Conflict of interest</title>
<p>The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s6">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s7">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fgene.2023.1134659/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fgene.2023.1134659/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet1.ZIP" id="SM1" mimetype="application/ZIP" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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