<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article article-type="editorial" dtd-version="2.3" xml:lang="EN" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1399127</article-id>
<article-id pub-id-type="doi">10.3389/fgene.2024.1399127</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Editorial</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Editorial: Lung adenocarcinoma: from genomics to immunotherapy</article-title>
<alt-title alt-title-type="left-running-head">Meng et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1399127">10.3389/fgene.2024.1399127</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Meng</surname>
<given-names>Yiming</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1540717/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Palmieri</surname>
<given-names>Maria</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/566859/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/validation/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes" equal-contrib="yes">
<name>
<surname>Frullanti</surname>
<given-names>Elisa</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/562951/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Central Laboratory</institution>, <institution>Cancer Hospital of Dalian University of Technology</institution>, <institution>Liaoning Cancer Hospital and Institute</institution>, <addr-line>Shenyang</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Cancer Genomics and Systems Biology Lab</institution>, <institution>Department of Medical Biotechnologies</institution>, <institution>University of Siena</institution>, <addr-line>Siena</addr-line>, <country>Italy</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Medical Biotechnologies</institution>, <institution>Med Biotech Hub and Competence Centre</institution>, <institution>University of Siena</institution>, <addr-line>Siena</addr-line>, <country>Italy</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited and reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/64369/overview">Anton A. Buzdin</ext-link>, European Organisation for Research and Treatment of Cancer, Belgium</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Elisa Frullanti, <email>elisa.frullanti@dbm.unisi.it</email>
</corresp>
<fn fn-type="equal" id="fn001">
<label>
<sup>&#x2020;</sup>
</label>
<p>These authors share last authorship</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>04</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1399127</elocation-id>
<history>
<date date-type="received">
<day>11</day>
<month>03</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>03</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Meng, Palmieri and Frullanti.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Meng, Palmieri and Frullanti</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<related-article id="RA1" related-article-type="commentary-article" journal-id="Front. Genet." xlink:href="https://www.frontiersin.org/researchtopic/54298" ext-link-type="uri">Editorial on the Research Topic <article-title>Lung adenocarcinoma: from genomics to immunotherapy</article-title> </related-article>
<kwd-group>
<kwd>solid cancer</kwd>
<kwd>cancer biomarkers</kwd>
<kwd>cancer prognosis</kwd>
<kwd>disease monitoring</kwd>
<kwd>lung cancer</kwd>
<kwd>precision medicine</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Cancer Genetics and Oncogenomics</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Lung cancer is the second most common type of cancer and is the leading cause of cancer death globally. In 2018, almost 2.1 million new cases were diagnosed, accounting for &#x223c;12% of the cancer burden worldwide (<italic>
<xref ref-type="bibr" rid="B3">Sung et al., 2021</xref>
</italic>). The malignant stage of lung cancer is known as lung adenocarcinoma, which is the most common and is diagnosed in both smokers and non-smokers.</p>
<p>There are two main types of lung cancer, the non-small cell lung cancer (NSCLC) and the small cell lung cancer (SCLC). Genomic studies have indicated that more than 80% of lung malignancies are classified as NSCLC, of which adenocarcinoma is the predominant subtype. In metastatic patients, although significant progress has been made for tumors harboring druggable mutations such as EGFR, the majority of those is lacking of such mutations and the prognosis remains poor. Platinum doublet chemotherapy has been the mainstay first-line treatment for patients who are diagnosed with metastatic lung adenocarcinoma without a targetable mutation (<italic>
<xref ref-type="bibr" rid="B1">Bodor et al., 2018</xref>
</italic>).</p>
<p>In recent years, immunotherapy has emerged as a treatment option that has shown a strong response in a subset of patients. The immune agents block crucial checkpoints and regulate the immune response, but the tumor cells evade the patient&#x2019;s immune system. By blocking these receptor&#x2013;ligand interactions, a particular subset of T cells is activated to recognize and respond to tumor cells. While such responses to immunotherapy are promising, they have only been effective in &#x223c;20% of patients (<italic>
<xref ref-type="bibr" rid="B2">Murciano-Goroff et al., 2020</xref>
</italic>).</p>
<p>Therefore, there is an urgent need to understand the underlying mechanism of lung adenocarcinoma from genome to immunotherapy. To address this unmet need, this Research Topic will focus on advancements related to lung adenocarcinoma (LUAD) and the identification of novel biomarkers as new therapy-determining or companion prognostic tools for the development of precise mechanism-based treatments.</p>
</sec>
<sec id="s2">
<title>Novel prognostic biomarkers for lung adenocarcinoma</title>
<p>The original articles published in the present Research Topic updated about novel prognostic biomarkers in lung adenocarcinoma patients through <italic>in silico</italic> approaches. In particular, <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1361445">Wang et al.</ext-link> F&#x2019;s group assessed the roles of unlocking phenotypic plasticity (UPP) in immune status, prognosis, and treatment in patients with LUAD based on the cancer genome atlas (TCGA) database (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.941567/full">https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.941567/full</ext-link>). They proposed UPP as a new and reliable prognosis indicator to predict the patient&#x2019;s overall survival and help the clinician to predict therapeutic responses and make individualized treatment plans.</p>
<p>Similarly, Zhou X et al. investigated the expression of indolethylamine N-methyltransferase (INMT) and its clinical value as a prognostic biomarker in LUAD based on TCGA and Gene Expression Omnibus (GEO) databases (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.946848/full">https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.946848/full</ext-link>). They found that INMT expression was significantly downregulated in LUAD, and the low expression of INMT was associated with poor prognosis but favorable immunotherapy response in LUAD.</p>
<p>Song Y et al. highlighted the association of necroptosis with LUAD and its potential use in guiding immunotherapy based on transcriptomic and clinical data of patients from TCGA and GEO databases (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.1027741/full">https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.1027741/full</ext-link>). They analyzed 902 samples and identified a prognostic signature of five necroptosis-related genes that could be used to predict the prognosis of LUAD patients.</p>
<p>Additionally, Zhu X&#x2019;s group focused their attention on the role of basement membranes (BMs) and their related genes for prognosis prediction in LUAD patients from TCGA and GEO databases (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2023.1100560/full">https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2023.1100560/full</ext-link>). They used a training set of data and a verification cohort and identified a prognostic signature of ten BM-associated genes that could be used to predict the prognosis of LUAD patients and guide personalized treatment.</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1339683">Zhang et al.</ext-link> investigated the relationship between cuproptosis and long non-coding RNAs (lncRNAs) in carcinogenesis and prognosis/treatment of LUAD patients based on transcriptomic data of 507 samples from TCGA database (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/pharmacology/articles/10.3389/fphar.2023.1236655/full">https://www.frontiersin.org/journals/pharmacology/articles/10.3389/fphar.2023.1236655/full</ext-link>). They constructed a prognostic model associated with the prognosis of patients with LUAD undergoing therapy and confirmed their results through <italic>in-vitro</italic> experiments.</p>
<p>Finally, Liu R&#x2019;s group has dedicated its work to studying the correlation between neutrophils and tumor development in LUAD based on data from the TCGA database and <italic>in-vitro</italic> experiments, identifying 30 hub genes that were significantly associated with neutrophil infiltration and developing a neutrophil scoring system associated with prognosis, and tumor immune microenvironment.</p>
</sec>
<sec id="s3">
<title>Relevant case reports</title>
<p>The present Research Topic also contains interesting, unusual, and noteworthy case reports that can help clinicians and scientists identify new trends, evaluate new therapeutic effects, as well as create new research questions. In particular, Hodges A et al. presented a 62-year female with Lynch syndrome, who developed an EGFR-positive lung adenocarcinoma highlighting the complex interplay of genetic cancer predisposition syndromes and the development of spontaneous driver mutations in the disease course and the subsequent management of tumors arising (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2023.1193503/full">https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2023.1193503/full</ext-link>).</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fgene.2024.1358078">Li H et al.</ext-link> presented a 35-year female with a rare lung cancer exhibiting choriocarcinoma features demonstrating the potential of chemo-immunotherapy in treating this aggressive subtype of lung cancer (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2024.1324057/abstract">https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2024.1324057/abstract</ext-link>).</p>
<p>Last but not least, Quanqing L et al. presented a 67-year female with a squamous cell carcinoma (NSCLC) that transforms into small cell carcinoma (SCLC) after five cycles of immunotherapy targeting PD-1 treatment (Sintilimab) of NSCLC (<ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2024.1329152/full">https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2024.1329152/full</ext-link>). This histological transformation could represent a potential mechanism of cancer therapeutic resistance.</p>
</sec>
<sec sec-type="conclusion" id="s4">
<title>Conclusion</title>
<p>In conclusion, this Research Topic highlights the importance of good prognostic biomarkers in determining the most effective treatment and revolutionizing cancer precision medicine. The Research Topic of articles provides a comprehensive overview of current advancements in prognostic and therapeutic lung cancer biomarkers offering a substantive framework that informs ongoing scientific inquiry and clinical practice, aiming to improve the understanding and management of LUAD patients.</p>
</sec>
</body>
<back>
<sec id="s5">
<title>Author contributions</title>
<p>YM: Conceptualization, Validation, Writing&#x2013;original draft, Writing&#x2013;review and editing. MP: Conceptualization, Data curation, Validation, Writing&#x2013;original draft, Writing&#x2013;review and editing. EF: Conceptualization, Data curation, Supervision, Writing&#x2013;original draft, Writing&#x2013;review and editing.</p>
</sec>
<sec sec-type="funding-information" id="s6">
<title>Funding</title>
<p>The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.</p>
</sec>
<ack>
<p>We deeply thank all the authors and reviewers who have participated in this Research Topic.</p>
</ack>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
<p>The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bodor</surname>
<given-names>J. N.</given-names>
</name>
<name>
<surname>Kasireddy</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Borghaei</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>First-line therapies for metastatic lung adenocarcinoma without a driver mutation</article-title>. <source>J. Oncol. Pract.</source> <volume>14</volume> (<issue>9</issue>), <fpage>529</fpage>&#x2013;<lpage>535</lpage>. <pub-id pub-id-type="doi">10.1200/JOP.18.00250</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Murciano-Goroff</surname>
<given-names>Y. R.</given-names>
</name>
<name>
<surname>Warner</surname>
<given-names>A. B.</given-names>
</name>
<name>
<surname>Wolchok</surname>
<given-names>J. D.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>The future of cancer immunotherapy: microenvironment-targeting combinations</article-title>. <source>Cell Res.</source> <volume>30</volume> (<issue>6</issue>), <fpage>507</fpage>&#x2013;<lpage>519</lpage>. <pub-id pub-id-type="doi">10.1038/s41422-020-0337-2</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sung</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Ferlay</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Siegel</surname>
<given-names>R. L.</given-names>
</name>
<name>
<surname>Laversanne</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Soerjomataram</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Jemal</surname>
<given-names>A.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <article-title>Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries</article-title>. <source>Ca. Cancer J. Clin.</source> <volume>71</volume> (<issue>3</issue>), <fpage>209</fpage>&#x2013;<lpage>249</lpage>. <pub-id pub-id-type="doi">10.3322/caac.21660</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>