Frontiers in Genetics | Computational Genomics

Methods

Published on 23 May 2024

Specific feature recognition on group specific networks (SFR-GSN): a biomarker identification model for cancer stages

in Computational Genomics

Bolin Chen
Yuxin Wang
Jinlei Zhang
Yourui Han
Hamza Benhammouda
Jun Bian
Ruiming Kang
Xuequn Shang

Frontiers in Genetics

doi 10.3389/fgene.2024.1407072

1,026 views
3 citations

Original Research

Published on 17 May 2024

Designing a multi-epitope vaccine against Shigella dysenteriae using immuno-informatics approach

in Computational Genomics

Hurria Qureshi
Amina Basheer
Muhammad Faheem
Muhammad Waqar Arshad
Sunil Kumar Rai
Syed Babar Jamal

Frontiers in Genetics

doi 10.3389/fgene.2024.1361610

2,590 views
2 citations

Original Research

Published on 10 May 2024

LcDel: deletion variation detection based on clustering and long reads

in Computational Genomics

Yanan Yu
Runtian Gao
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1404415

1,076 views

Original Research

Published on 10 May 2024

BJLD-CMI: a predictive circRNA-miRNA interactions model combining multi-angle feature information

in Computational Genomics

Yi-Xin Zhao
Chang-Qing Yu
Li-Ping Li
Deng-Wu Wang
Hui-Fan Song
Yu Wei

Frontiers in Genetics

doi 10.3389/fgene.2024.1399810

1,283 views
2 citations

Original Research

Published on 09 May 2024

Bipartite networks represent causality better than simple networks: evidence, algorithms, and applications

in Computational Genomics

Bingran Shen
Gloria M. Coruzzi
Dennis Shasha

Frontiers in Genetics

doi 10.3389/fgene.2024.1371607

1,907 views
1 citation

Original Research

Published on 09 May 2024

Transient receptor potential channels’ genes forecast cervical cancer outcomes and illuminate its impact on tumor cells

in Computational Genomics

Shan Jiang
Xuefen Lin
Qiaoling Wu
Jianfeng Zheng
Zhaolei Cui
Xintong Cai
Yanhong Li
Chaoqiang Zheng
Yang Sun

Frontiers in Genetics

doi 10.3389/fgene.2024.1391842

1,398 views

Original Research

Published on 06 May 2024

CD-Loop: a chromatin loop detection method based on the diffusion model

in Computational Genomics

Jiquan Shen
Yang Wang
Junwei Luo

Frontiers in Genetics

doi 10.3389/fgene.2024.1393406

1,744 views
3 citations

Original Research

Published on 06 May 2024

MIFAM-DTI: a drug-target interactions predicting model based on multi-source information fusion and attention mechanism

in Computational Genomics

Jianwei Li
Lianwei Sun
Lingbo Liu
Ziyu Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1381997

2,224 views
2 citations

Original Research

Published on 30 Apr 2024

In search of the ratio of miRNA expression as robust biomarkers for constructing stable diagnostic models among multi-center data

in Computational Genomics

Cuidie Ma
Yonghao Zhang
Rui Ding
Han Chen
Xudong Wu
Lida Xu
Changyuan Yu

Frontiers in Genetics

doi 10.3389/fgene.2024.1381917

1,624 views
2 citations

Original Research

Published on 26 Apr 2024

Predict lncRNA-drug associations based on graph neural network

in Computational Genomics

Peng Xu
Chuchu Li
Jiaqi Yuan
Zhenshen Bao
Wenbin Liu

Frontiers in Genetics

doi 10.3389/fgene.2024.1388015

3,255 views
28 citations

Original Research

Published on 25 Apr 2024

Bayesian hidden mark interaction model for detecting spatially variable genes in imaging-based spatially resolved transcriptomics data

in Computational Genomics

Jie Yang
Xi Jiang
Kevin Wang Jin
Sunyoung Shin
Qiwei Li

Frontiers in Genetics

doi 10.3389/fgene.2024.1356709

1,489 views
3 citations

Original Research

Published on 24 Apr 2024

A multi-organization epigenetic age prediction based on a channel attention perceptron networks

in Computational Genomics

Jian Zhao
Haixia Li
Jing Qu
Xizeng Zong
Yuchen Liu
Zhejun Kuang
Han Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1393856

1,467 views
2 citations

Technology and Code

Published on 24 Apr 2024

SVhawkeye: an ultra-fast software for user-friendly visualization of targeted structural fragments from BAM files

in Computational Genomics

Yuhui Xiao
Tao Yu
Fan Liang
Tingping Hou

Frontiers in Genetics

doi 10.3389/fgene.2024.1352443

2,373 views
1 citation

Original Research

Published on 18 Apr 2024

Single-cell and bulk RNAseq unveils the immune infiltration landscape and targeted therapeutic biomarkers of psoriasis

in Computational Genomics

Wenhui Deng
Yijiao Yan
Chengzhi Shi
Daoshun Sui

Frontiers in Genetics

doi 10.3389/fgene.2024.1365273

3,869 views
1 citation

Original Research

Published on 18 Apr 2024

Identification of common genes and pathways between type 2 diabetes and COVID-19

in Computational Genomics

Ya Wang
Kai Li
Shuangyang Mo
Peishan Yao
Jiaxing Zeng
Shunyu Lu
Shanyu Qin

Frontiers in Genetics

doi 10.3389/fgene.2024.1249501

2,779 views
2 citations

Methods

Published on 16 Apr 2024

OGNNMDA: a computational model for microbe-drug association prediction based on ordered message-passing graph neural networks

in Computational Genomics

Jiabao Zhao
Linai Kuang
An Hu
Qi Zhang
Dinghai Yang
Chunxiang Wang

Frontiers in Genetics

doi 10.3389/fgene.2024.1370013

1,281 views
2 citations