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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2018.00396</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Effects of Partial Mortality on Growth, Reproduction and Total Lipid Content in the Elkhorn Coral <italic>Acropora palmata</italic></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Pi&#x00F1;&#x00F3;n-Gonz&#x00E1;lez</surname> <given-names>Victor M.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/570905/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Banaszak</surname> <given-names>Anastazia T.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/281383/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Posgrado en Ciencias del Mar y Limnolog&#x00ED;a, Universidad Nacional Aut&#x00F3;noma de M&#x00E9;xico</institution>, <addr-line>Ciudad de M&#x00E9;xico</addr-line>, <country>Mexico</country></aff>
<aff id="aff2"><sup>2</sup><institution>Instituto de Ciencias del Mar y Limnolog&#x00ED;a, Unidad Acad&#x00E9;mica de Sistemas Arrecifales, Universidad Nacional Aut&#x00F3;noma de M&#x00E9;xico</institution>, <addr-line>Canc&#x00FA;n</addr-line>, <country>Mexico</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Noga Stambler, Bar-Ilan University, Israel</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Douglas Fenner, Independent Researcher, United States; Charles Birkeland, University of Hawaii, United States</p></fn>
<corresp id="c001">&#x002A;Correspondence: Anastazia T. Banaszak, <email>banaszak@cmarl.unam.mx</email></corresp>
<fn fn-type="other" id="fn001"><p>This article was submitted to Coral Reef Research, a section of the journal Frontiers in Marine Science</p></fn></author-notes>
<pub-date pub-type="epub">
<day>05</day>
<month>11</month>
<year>2018</year>
</pub-date>
<pub-date pub-type="collection">
<year>2018</year>
</pub-date>
<volume>5</volume>
<elocation-id>396</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>05</month>
<year>2018</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>10</month>
<year>2018</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2018 Pi&#x00F1;&#x00F3;n-Gonz&#x00E1;lez and Banaszak.</copyright-statement>
<copyright-year>2018</copyright-year>
<copyright-holder>Pi&#x00F1;&#x00F3;n-Gonz&#x00E1;lez and Banaszak</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Partial mortality (PM) is increasingly common in the Elkhorn coral <italic>Acropora palmata</italic> and, depending on the causative agent, is potentially lethal. The effects of PM on growth, reproduction and total lipid content in <italic>A. palmata</italic> were studied by sampling apparently healthy (AH) colonies in comparison with colonies showing signs of PM. Branch growth rates and lesion regeneration rates were estimated using monthly photographs over a four-month period prior to the summer spawning season. No differences were found in the growth rates of colonies with PM compared to AH colonies. The areas affected by PM did not regenerate during the period of the study. Colonization of the lesions by competing species and sediment cover were documented and did not show major changes. During the spawning season, percent fertilization, egg volume and embryonic development were evaluated for comparison between AH colonies and those with PM. Total lipids were also quantified in tissues from three branches per colony. Percentage fertilization was similar in both AH colonies and those with PM. Embryonic development was normal, regardless of proximity to the lesion borders. However, egg volume was significantly lower in PM colonies than in AH colonies. Lower lipid concentrations were found at the edges of the lesions and similar to those found at the growing edges of the branches. The lack of regeneration may be explained by the low lipid concentration, because the polyps adjacent to the lesion do not have an adequate energy budget as a result of the damage. This would also affect their ability to compete against organisms that colonize the site of the lesion, a distinct situation to the rapid regeneration rates characteristic of lesions due to physical injury of the colony. Therefore, we conclude that partial mortality in <italic>A. palmata</italic> affects the colony, inducing energetic stress due to both competition and decreased egg quality.</p>
</abstract>
<kwd-group>
<kwd>Elkhorn coral</kwd>
<kwd>branch growth</kwd>
<kwd>developmental anomalies</kwd>
<kwd>lipid content</kwd>
<kwd>sexual reproduction</kwd>
<kwd>spawning</kwd>
</kwd-group>
<contract-num rid="cn001">608</contract-num>
<contract-num rid="cn002">153260</contract-num>
<contract-num rid="cn002">247765</contract-num>
<contract-num rid="cn002">Post-graduate fellowship</contract-num>
<contract-sponsor id="cn001">Universidad Nacional Aut&#x00F3;noma de M&#x00E9;xico<named-content content-type="fundref-id">10.13039/501100005739</named-content></contract-sponsor>
<contract-sponsor id="cn002">Consejo Nacional de Ciencia y Tecnolog&#x00ED;a<named-content content-type="fundref-id">10.13039/501100003141</named-content></contract-sponsor>
<counts>
<fig-count count="8"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="66"/>
<page-count count="10"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec><title>Introduction</title>
<p>Coral reefs are complex formations created by the accumulation of calcium carbonate deposited by animals and algae. They are considered to be the marine ecosystems with the widest biological diversity on the planet (<xref ref-type="bibr" rid="B6">Bellwood and Hughes, 2001</xref>; <xref ref-type="bibr" rid="B28">Hughes et al., 2017</xref>). However, because they need strict conditions for their formation (<xref ref-type="bibr" rid="B32">Kleypas et al., 1999</xref>; <xref ref-type="bibr" rid="B44">Muir et al., 2015</xref>) they are restricted to less than 0.1% of the ocean&#x2019;s surface (<xref ref-type="bibr" rid="B55">Spalding and Grenfell, 1997</xref>). Despite this, they provide important ecological and economic services (<xref ref-type="bibr" rid="B5">Bell et al., 2013</xref>; <xref ref-type="bibr" rid="B14">Cooper et al., 2014</xref>; <xref ref-type="bibr" rid="B43">Mitra and Zaman, 2015</xref>; <xref ref-type="bibr" rid="B54">Spalding et al., 2017</xref>). Hermatypic corals are primarily responsible for the formation of coral reefs (<xref ref-type="bibr" rid="B8">Cairns et al., 2009</xref>). For Caribbean reefs, <italic>Acropora</italic> spp., specifically <italic>Acropora palmata</italic> is of great importance due to their ability to withstand high energy conditions, high growth rates, ability to produce fragments and regenerate as well as their three-dimensional architecture, which provides habitat for many species (<xref ref-type="bibr" rid="B39">Lirman, 2002</xref>).</p>
<p><italic>Acropora palmata</italic>, like most hermatypic corals, lives in a symbiotic relationship with a dinoflagellate alga called <italic>Symbiodinium</italic> that contributes to its host coral products that are derived from photosynthesis, in exchange for protection from external conditions and a constant supply of inorganic nutrients from the efficient recycling of the coral&#x2019;s metabolic waste (<xref ref-type="bibr" rid="B15">Davy et al., 2012</xref>; <xref ref-type="bibr" rid="B50">Pernice et al., 2012</xref>). The contribution of energy by the algae is more than the coral&#x2019;s daily requirement, so the surplus carbon, mainly glucose, is transformed into triglycerides and waxes to form large energy reserves (<xref ref-type="bibr" rid="B47">Oku et al., 2003</xref>). These energy reserves allow the coral to maintain its high productivity and sustain metabolic processes such as growth and sexual reproduction (<xref ref-type="bibr" rid="B18">Edmunds and Davies, 1986</xref>; <xref ref-type="bibr" rid="B22">Grottoli et al., 2004</xref>).</p>
<p>Lipids are key energetic biomolecules for hermatypic corals in particular, representing up to 40% of their dry weight (<xref ref-type="bibr" rid="B27">Harland et al., 1993</xref>; <xref ref-type="bibr" rid="B47">Oku et al., 2003</xref>; <xref ref-type="bibr" rid="B29">Imbs, 2013</xref>), although this percentage can vary in terms of environmental conditions such as light intensity and water temperature, as well as the coral&#x2019;s nutritional and health status (<xref ref-type="bibr" rid="B25">Harland et al., 1992</xref>; <xref ref-type="bibr" rid="B46">Oku et al., 2002</xref>). Under normal circumstances there is a balance between the energy that is produced and that which is consumed (<xref ref-type="bibr" rid="B22">Grottoli et al., 2004</xref>), however, under stressful conditions this balance can be broken, because the energy reserves, in addition to supporting growth and reproduction, are also the source of energy to combat the consequences of the stress (<xref ref-type="bibr" rid="B53">Seemann et al., 2013</xref>). Lipids represent up to 40% of coral tissue dry weight and, as such, are the primary energy reserve, therefore decreases or increases in the concentrations of total lipids are useful indicators of the use or accumulation, respectively, of these reserves (<xref ref-type="bibr" rid="B56">Stimson, 1987</xref>; <xref ref-type="bibr" rid="B62">Ward, 1995</xref>; <xref ref-type="bibr" rid="B46">Oku et al., 2002</xref>, <xref ref-type="bibr" rid="B47">2003</xref>; <xref ref-type="bibr" rid="B22">Grottoli et al., 2004</xref>; <xref ref-type="bibr" rid="B29">Imbs, 2013</xref>; <xref ref-type="bibr" rid="B37">Lin et al., 2013</xref>; <xref ref-type="bibr" rid="B13">Conlan et al., 2017</xref>, <xref ref-type="bibr" rid="B12">2018</xref>). For this reason, lipid concentrations are considered to be a good indicator of coral stress.</p>
<p>Corals can suffer injuries or lesions that are caused by events such as non-lethal diseases, predation, high or prolonged sedimentation or as a result of physical damage caused by various types of disturbances such as hurricanes or tropical storms (<xref ref-type="bibr" rid="B36">Lewis, 1997</xref>; <xref ref-type="bibr" rid="B42">Meesters et al., 1997</xref>; <xref ref-type="bibr" rid="B66">Wesseling et al., 2001</xref>; <xref ref-type="bibr" rid="B9">Cantin and Lough, 2014</xref>). Coral bleaching, whereby the symbiotic algae leave or are expelled from the coral tissue, can also result in lesions on the colony, especially if the bleaching event is prolonged (<xref ref-type="bibr" rid="B20">Gleason, 1993</xref>; <xref ref-type="bibr" rid="B31">Jones, 2008</xref>). Corals have mechanisms that respond immediately to an injury, which initiate the regeneration of the skeleton and tissue in the damaged area. The regeneration process consumes large amounts of energy, involving all the adjacent polyps up to 15 cm around the lesion (<xref ref-type="bibr" rid="B48">Oren et al., 2001</xref>; <xref ref-type="bibr" rid="B33">Klingenberg, 2008</xref>, <xref ref-type="bibr" rid="B34">2014</xref>; <xref ref-type="bibr" rid="B11">Cocito and Sgorbini, 2014</xref>). On occasion, the regeneration process cannot cover the entire lesion, probably due to various factors such as the origin, shape, and size of the lesion relative to colony size, environmental conditions, and the high energy cost involved (<xref ref-type="bibr" rid="B3">Bak and Steward-Van Es, 1980</xref>; <xref ref-type="bibr" rid="B49">Oren et al., 1997</xref>, <xref ref-type="bibr" rid="B48">2001</xref>; <xref ref-type="bibr" rid="B16">Denis et al., 2013</xref>). Consequently, the area becomes covered by colonizing organisms or sediment and the lesions become permanent, becoming what is known as partial mortality.</p>
<p>Corals are modular organisms and can survive partial tissue loss (<xref ref-type="bibr" rid="B48">Oren et al., 2001</xref>). However, because recovery from partial mortality represents a major expenditure of energy for the coral, in an effort to maintain colony integrity, it may interrupt other vital processes that require energy reserves such as reproduction and growth (<xref ref-type="bibr" rid="B49">Oren et al., 1997</xref>, <xref ref-type="bibr" rid="B48">2001</xref>). Many studies have determined the effects of partial mortality on coral energy reserves focusing on reproduction (<xref ref-type="bibr" rid="B35">Kojis and Quinn, 1985</xref>; <xref ref-type="bibr" rid="B52">Rinkevich and Loya, 1989</xref>; <xref ref-type="bibr" rid="B61">Van Veghel and Bak, 1994</xref>; <xref ref-type="bibr" rid="B48">Oren et al., 2001</xref>; <xref ref-type="bibr" rid="B21">Graham and van Woesik, 2013</xref>; <xref ref-type="bibr" rid="B51">Riegl and Purkis, 2015</xref>), and growth (<xref ref-type="bibr" rid="B2">Bak, 1983</xref>; <xref ref-type="bibr" rid="B19">Fang et al., 1989</xref>; <xref ref-type="bibr" rid="B24">Guzm&#x00E1;n et al., 1994</xref>; <xref ref-type="bibr" rid="B41">Meesters et al., 1994</xref>; <xref ref-type="bibr" rid="B38">Lirman, 2000</xref>; <xref ref-type="bibr" rid="B1">Alvarado and Acosta, 2009</xref>) while regeneration is active. To our knowledge, no studies have documented the effects, if any, once regeneration has stopped and partial mortality is permanent. This is relevant to the coral&#x2019;s energy budget if these lesions represent an area of high energy demand, i.e., the amount of lipids near the lesion is less than that in areas at a distance from the lesion. In this case, areas of partial mortality could continue to be a drain on the coral&#x2019;s energy and negatively affect other processes, such as growth and reproduction. Therefore, the objective of this contribution is to evaluate if there is a prolonged effect of partial mortality on the energy budget and its possible implications on branch growth and egg size, as well as embryonic development in the coral <italic>A. palmata</italic>, by comparing the growing edge of apparently healthy colonies to the borders of the lesions of colonies with partial mortality.</p>
</sec>
<sec id="s1" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec><title>Study Area</title>
<p>Coral tissue samples were collected from three sites, all located within the Puerto Morelos Reef National Park, Mexico (Figure <xref ref-type="fig" rid="F1">1</xref>). Growth measurements were also conducted in the same three sites whereas gamete bundles were collected only from Limones Reef. The northern site (20&#x00B0; 52&#x2032; 25.02&#x2033; N, 86&#x00B0; 51&#x2032; 4.67&#x2033; W) was located in Limones Reef, the central site (20&#x00B0; 55&#x2032; 4.01&#x2033; N, 86&#x00B0; 49&#x2032; 46.91&#x2033; W) was located in Cuevones Reef, and the southern site (20&#x00B0; 59&#x2032; 18.74&#x2033; N, 86&#x00B0; 47&#x2032; 26.66&#x2033; W) was located at &#x201C;La Bocana&#x201D; Reef. The sites were chosen based on the abundance of <italic>A. palmata</italic> and the presence of partial mortality (<xref ref-type="bibr" rid="B4">Banaszak and &#x00C1;lvarez-Filip, 2014</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>The study area located in the Western Atlantic at Puerto Morelos Reef National Park, Mexico. The star denotes the location of the National Park and the circles show the location of the three study sties.</p></caption>
<graphic xlink:href="fmars-05-00396-g001.tif"/>
</fig>
<p>The study was carried out prior to and during the <italic>A. palmata</italic> spawning season from March to August 2016 and again during the spawning season in 2017. A total of 16 colonies were used in the study: three colonies of apparently healthy <italic>A. palmata</italic> (AH) and three colonies with partial mortality (PM) were selected from the Cuevones and Limones sites and two of each category from the La Bocana site, due to the smaller number of healthy colonies at that site. All colonies were tagged and ranged between 80 and 100 cm maximum diameter to ensure that the colonies were of reproductive size (<xref ref-type="bibr" rid="B7">Bruckner and Hourigan, 2000</xref>).</p>
</sec>
<sec><title>Growth Measurements</title>
<p>Three branches from each of the 16 <italic>A. palmata</italic> colonies were selected for the measurement of surface growth rates (defined as changes in surface area). A 1 cm diameter PVC disk was glued onto each of the branches at 5 cm from the apical limit to serve as a reference point (Figure <xref ref-type="fig" rid="F2">2</xref>). To document changes in surface area, ten photographs of each branch were taken at monthly intervals for four consecutive months using a Nikon Coolpix AW130 digital camera attached to an aluminum support that fitted over the disk. These photographs were used to calculate changes in the surface areas, from the disk to the growth edge, in branches unaffected by partial mortality as well as branches affected by partial mortality. Benthic composition and cover by organisms colonizing the lesion space were also documented from the photographs. The latter was based on the Caribbean Coastal Marine Productivity method (<xref ref-type="bibr" rid="B10">CARICOMP, 2001</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>The technique for the measurement of surface growth rates of <italic>Acropora palmata</italic> branches is shown. A camera was attached to an aluminum support that was fixed to a PVC disk. The blue outline indicates the area measured in an apparently healthy colony <bold>(A)</bold> and in <bold>(B)</bold> the blue outline indicates the measured area of a lesion in a colony with old partial mortality. The measured area of healthy tissue in colonies with old partial mortality were measured as in <bold>(A)</bold>.</p></caption>
<graphic xlink:href="fmars-05-00396-g002.tif"/>
</fig>
</sec>
<sec><title>Developmental Anomalies</title>
<p>Gamete samples were collected only at Limones Reef due to logistical reasons. Specially designed collecting nets, approximately 1.5 m high and 90 cm in maximum diameter, were used to obtain gamete bundles. The bundles were transported to the laboratory where cross-fertilizations were carried out with the first samples taken 1 h after the first division was observed to calculate fertilization rates. Egg size was determined using Adobe Photoshop CS5 Extended v12.0 on digital photographs taken using an optical microscope (Leica DM500) at 100 times magnification. Further samples were taken every hour during the 4 h following the first embryonic division and then every 12 h until the planula larva stage was reached. The samples were photographed under an optical microscope (Leica DM500) at 100 times magnification. The anomalies present during development were evaluated and cataloged as malformations or delays in embryo development (<xref ref-type="bibr" rid="B40">L&#x00F3;pez et al., 2012</xref>) at the four-cell stage.</p>
</sec>
<sec><title>Total Lipid Extraction and Determination</title>
<p>To determine the concentration of lipids in coral tissue, three samples of approximately 2 cm<sup>2</sup> each were taken. The first sample was taken from the branch edge and subsequent samples were taken at 1.5 cm intervals toward the branch base in AH individuals of <italic>A. palmata</italic>. For the colonies with PM, the first sample was taken at the edge of the lesion and at 1.5 cm intervals toward the edge of the branch. All samples were taken 11 days before the <italic>A. palmata</italic> spawning event. The samples were frozen immediately in liquid nitrogen and stored at -80&#x00B0;C for further analysis.</p>
<p>Total lipid extraction was carried out using the methods proposed by <xref ref-type="bibr" rid="B26">Harland et al. (1991)</xref> and modified by <xref ref-type="bibr" rid="B27">Harland et al. (1993)</xref> and <xref ref-type="bibr" rid="B23">Grottoli-Everett and Kuffner (1995)</xref> using the coral tissue samples stored at -80&#x00B0;C. The samples were measured, photographed, and weighed before starting the extraction protocol. All the glassware used was washed two times with tap water, then with Milli-Q water and finally with chloroform before each extraction. A blank reference was run with each extraction cycle.</p>
</sec>
<sec><title>Data Analysis</title>
<p>Changes in surface area of each branch as well as the evaluation of anomalies and malformations in embryos were estimated using Adobe Photoshop CS5 Extended v12.0. All of the data were processed in R version 3.3.3 and normality and homoscedasticity tests were carried out to determine if the distribution of the data was normal. To compare monthly growth rates between AH and PM colonies a repeated measures ANOVA with Welch&#x2019;s correction was performed to compare the growth rates of both conditions (AH and PM) for each month using a repeated measures ANOVA test. This is a robust test for heteroscedastic data without the need to apply transformations (<xref ref-type="bibr" rid="B17">Derrick et al., 2016</xref>). We calculated growth rates of the individual branches rather than using an average value per colony to avoid over- or under-estimation (<xref ref-type="bibr" rid="B64">Weisburd and Britt, 2014</xref>) and thus obtain reliable growth values. Differences in the measured areas between the first (March&#x2013;April) and the last month (June&#x2013;July) of measurements, differences in the percentage of anomalies, changes in colonizing organism percent cover and branch growth, both together and separated by site, were analyzed using the nonparametric Wilcoxon test.</p>
<p>The percentage fertilization rates and comparison of egg volumes of eggs produced by AH and PM corals were analyzed using the Student&#x2019;s <italic>t</italic>-test with Welch&#x2019;s correction. A Wilcoxon test was performed to evaluate differences in the percentage of anomalies in developing embryos. Total lipid results for the three sites were grouped due to low sample numbers, to increase statistical power even though it was likely that variability would be higher due to differences between sites. The Student&#x2019;s <italic>t</italic>-test was used to analyze for differences in lipid concentrations between AH and PM colonies at each distance sampled (0&#x2013;1 cm, 2.5&#x2013;3.5 cm, and 5&#x2013;6 cm). An ANOVA test with Welch&#x2019;s correction was used to compare lipid concentrations between distances for each condition. The data are expressed as median &#x00B1; median absolute deviation (MAD) due to their wide variability. The data, including outliers, are shown in box and whisker plots where the horizontal lines within the boxes indicate the median, the boxes indicate the second and third quartiles, and the whiskers denote the first and fourth quartiles.</p>
</sec>
</sec>
<sec><title>Results</title>
<sec><title>Area Occupied by Partial Mortality</title>
<p>The analysis of the 24 lesions on <italic>A. palm</italic>ata colonies showed that they were maintained over time, with no significant differences between the first (March&#x2013;April) and last (June&#x2013;July) month of sampling (<italic>p</italic> = 0.190, power test = 95%). The total area of partial mortality per colony branch was 49.2 cm<sup>2</sup> &#x00B1; 4.45 in March&#x2013;April 2016, which reduced to 38.8 cm<sup>2</sup> &#x00B1; 12.6 by June&#x2013;July of the same year, however, the difference was not statistically significant (<italic>p</italic> = 0.190). The variability in the areas occupied by lesions was greater in June than in March.</p>
</sec>
<sec><title>Colonization of Lesions</title>
<p>The composition of colonizing organisms that occupied the areas of partial mortality in the <italic>A. palmata</italic> branches changed (Figure <xref ref-type="fig" rid="F3">3</xref>), although there were no statistically significant differences in percent cover (<italic>p</italic> > 0.05, power test &#x2265; 75%) over the four-month sampling period. The percent cover occupied by the dominant algal group presented trends that were not statistically significant. Turf algae decreased from 50.5% &#x00B1; 10.5 to 39.3% &#x00B1; 5.25 with a concurrent increase in fleshy macroalgae from 10% &#x00B1; 7.5 to 20.25% &#x00B1; 18.7. Percent cover occupied by sand did not change over the four-month period.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Percent cover of the categories of organisms that colonized or non-biological material that covered the areas of partial mortality in branches of the coral <italic>A. palmata</italic> during the months of March (red bars) and June (blue bars), 2016. Groupings: TALG, Turf algae; EALG, Encrusting algae; ENSP, Encrusting sponges; CALG, Calcareous algae; FALG, Fleshy macroalgae; SAND, Sand; Substrates: ROCK, Rock; OTHER, Other.</p></caption>
<graphic xlink:href="fmars-05-00396-g003.tif"/>
</fig>
</sec>
<sec><title>Branch Growth Rates</title>
<p>The variations in the surface growth rates of the branches were high at all sites (Figure <xref ref-type="fig" rid="F4">4</xref>). The lowest positive daily growth rate recorded during the four-month period was 0.01 cm<sup>2</sup> day<sup>-1</sup>, registered in Limones Reef in May&#x2013;June, whereas the highest was daily growth rate was seventy times higher at 0.7 cm<sup>2</sup> day<sup>-1</sup> in Limones Reef in April&#x2013;May. Negative growth rates are due to the breakage of the branch during the previous month. Due to these large variations, we considered it more appropriate to analyse growth rates of the individual branches rather than using an average value per colony.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>The surface growth rates (cm<sup>2</sup> day<sup>-1</sup>) of each branch that was measured at the three sampling sites during the 4 months of the study, for apparently healthy (AH, blue circles) colonies and those with partial mortality (PM, red circles). Within the colored circles, black circles represent the rates for March, triangles for April, squares for May, and plus signs for June.</p></caption>
<graphic xlink:href="fmars-05-00396-g004.tif"/>
</fig>
<p>Analysis of the growth rates at each site (Figures <xref ref-type="fig" rid="F5">5A</xref>&#x2013;<xref ref-type="fig" rid="F5">C</xref>) indicates that there were no significant differences between the AH branches and the branches with PM, for the four-month period (<italic>p</italic> > 0.05) at any of the sites. However, significant monthly variation was found in the growth rates for both AH and PM colonies (<italic>p</italic> &#x003C; 0.05, power test &#x2265; 95%) in Limones Reef between the months of April&#x2013;May (0.14 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.4) when compared with March&#x2013;April (0.31 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.8) for AH colonies, as well as for the months of March&#x2013;April (0.43 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.13) compared with June&#x2013;July (0.16 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.17) and April&#x2013;May (0.08 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.12). For colonies with PM, differences were found (<italic>P</italic> &#x003C; 0.05) between May&#x2013;June (0.32 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.09) and April&#x2013;May (0.08 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.12). At Cuevones Reef, only the AH branches showed differences (<italic>p</italic> = 0.006) between the months of June&#x2013;July (0.11 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.02) when compared to May&#x2013;June (0.32 cm<sup>2</sup> day<sup>-1</sup> &#x00B1; 0.09). At La Bocana Reef, over the four-month period, there were no statistically significant changes detected. Finally, there were no significant differences in growth rates of AH branches relative to the branches with PM for any site. However, there is high variation in the growth rates of the branches over time.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Surface growth rates (cm<sup>2</sup> day<sup>-1</sup>) for branches measured in Limones Reef <bold>(A)</bold>, Cuevones Reef <bold>(B)</bold> and La Bocana Reef <bold>(C)</bold>. Shown are growth rates of branches with partial mortality (PM, red bars) vs. apparently healthy branches (AH, blue bars) throughout the months of March to June, 2016.</p></caption>
<graphic xlink:href="fmars-05-00396-g005.tif"/>
</fig>
</sec>
<sec><title>Gamete Quality</title>
<p>The first two-celled embryos were observed at 2.5 h after fertilization of the gametes collected from both AH colonies and colonies with PM. Fertilization rates were not significantly different (<italic>p</italic> > 0.05, power test = 89%) for samples collected from colonies with PM (median of 80.75% &#x00B1; 0.54) when compared to samples from AH colonies (median of 71.45% &#x00B1; 6.46). The fertilization percentage of AH corals shows a much wider variability in comparison to that observed in corals with PM (Figure <xref ref-type="fig" rid="F6">6A</xref>). The percentage of anomalies (Figure <xref ref-type="fig" rid="F6">6B</xref>), were variable and did not present significant differences (<italic>p</italic> > 0.05, power test = 35%) between the eggs of AH colonies (median of 14.98% &#x00B1; 6.04) and those from colonies with PM (median of 15.55% &#x00B1; 7.63). In terms of egg volume, the median volume of the eggs produced by AH colonies was 0.026 mm<sup>3</sup> &#x00B1; 0.005, while those produced by colonies with PM was 0.021 mm<sup>3</sup> &#x00B1; 0.005 (Figure <xref ref-type="fig" rid="F7">7</xref>). The eggs from AH colonies were significantly larger than those from colonies with PM (<italic>p</italic> &#x003C; 0.05, power test = 99%).</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Percentage fertilization <bold>(A)</bold> and percentage of anomalies <bold>(B)</bold> of gametes collected from apparently healthy (blue bars) colonies vs. those obtained from colonies with partial mortality (red bars), collected from the Limones site.</p></caption>
<graphic xlink:href="fmars-05-00396-g006.tif"/>
</fig>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Volume of eggs produced by apparently healthy (blue bars) colonies vs. colonies with partial mortality (red bars) from the Limones site, collected during the spawning season in 2017.</p></caption>
<graphic xlink:href="fmars-05-00396-g007.tif"/>
</fig>
</sec>
<sec><title>Lipids in Tissues</title>
<p>The results of the total lipid analysis (Figure <xref ref-type="fig" rid="F8">8</xref>) showed that there were no significant differences in the amount of lipids between the branches with PM and the AH branches (<italic>p</italic> > 0.05, power test &#x2265; 30%). Of the colonies that were sampled, there are no significant differences in the amount of lipids at the lesion borders in colonies with PM when compared with the growth edges of AH colonies. This pattern holds for at least a 5 cm distance from the lesions in colonies with PM. On the other hand, the amount of lipids did vary significantly between sampling distances, both in the AH branches (<italic>p</italic> = 0.013, power test = 99%) and in the branches with PM (<italic>p</italic> = 0.01, power test = 99%). The <italic>post hoc</italic> multi-comparison test, after the ANOVA with Welch&#x2019;s correction, showed that the coral tissue at distances of 2.5&#x2013;3.5 cm and 5&#x2013;6 cm from the edge did not contain significant differences (<italic>p</italic> > 0.05) in the amounts of total lipids. This held true for both conditions of colonies: AH and PM. However, at a distance of 0&#x2013;1 cm from the growth edge in AH colonies and the lesion border for colonies with PM, there are significantly lower concentrations of lipids with respect to the other two distances (<italic>p</italic> &#x003C; 0.05). The results show clear evidence of a low energy zone at the growth edge for AH colonies and at the lesion border for colonies with PM. From at least 2.5 to 3.5 cm distance from the growth edge of AH colonies and lesion border of colonies with PM, lipid concentrations increase.</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption><p>The concentration of lipids (g) per tissue area (cm<sup>2</sup>) is shown at different distances (cm) from the border of the lesion in branches with partial mortality (red bars) and growth edge in apparently healthy (blue bars) branches.</p></caption>
<graphic xlink:href="fmars-05-00396-g008.tif"/>
</fig>
</sec>
</sec>
<sec><title>Discussion</title>
<p>Partial mortality in <italic>A. palmata</italic> colonies has a negative effect on their energy budget as shown by the results obtained in this study. The negative effects were detected in colonies with old partial mortality, where the lesions were completely colonized by other species or covered in sediment. Certain aspects of the reproduction biology of <italic>A. palmata</italic> were affected by the presence of old partial mortality, whereas colony branch growth appeared to be unaffected.</p>
<p>All studies to date, on the effects of partial mortality on reproduction and growth have only focused on the first stages of the injury or lesion when regeneration tends to be accelerated. Reported results differ widely ranging from a reduction in reproductive activity in <italic>Stylophora pistillata</italic> (<xref ref-type="bibr" rid="B52">Rinkevich and Loya, 1989</xref>) and massive <italic>Porites</italic> spp. (<xref ref-type="bibr" rid="B65">Welsh et al., 2015</xref>) and fecundity in <italic>Goniastrea favulus</italic> (<xref ref-type="bibr" rid="B35">Kojis and Quinn, 1985</xref>), to cases where the effects are localized and only affected up to a 15 cm radius around injured areas in <italic>Favia favus</italic> (<xref ref-type="bibr" rid="B48">Oren et al., 2001</xref>). Negative effects also vary depending on the morphotype of colonies of <italic>Montastrea annularis</italic> (<xref ref-type="bibr" rid="B61">Van Veghel and Bak, 1994</xref>). For <italic>A. palmata</italic> it has been reported that injured colonies completely stop gamete production (<xref ref-type="bibr" rid="B38">Lirman, 2000</xref>).</p>
<p>The area occupied by partial mortality in individuals of <italic>A. palmata</italic> did not change during the period of study, designed to coincide with the months leading up to the summer spawning season. No significant changes were found between the months of March&#x2013;April and June&#x2013;July (Figures <xref ref-type="fig" rid="F5">5A</xref>&#x2013;<xref ref-type="fig" rid="F5">C</xref>). This is likely explained by the fact that regeneration is a gradual process that decreases with time reaching the point where it stops, even when the injury has not completely regenerated. The most accepted explanation for this fact is that regeneration is stopped in order to not continue with the excessive energy expenditure caused by this process (<xref ref-type="bibr" rid="B49">Oren et al., 1997</xref>, <xref ref-type="bibr" rid="B48">2001</xref>). However, the lipid results obtained in this study contradict this explanation because they show that even after the regeneration process was stopped, the lesions continue to represent areas of high energy demand, as reflected by the significantly lower lipid concentrations at the borders of the lesions (Figure <xref ref-type="fig" rid="F8">8</xref>).</p>
<p>Furthermore, our results show that the amount of lipids at the borders of the lesions does not differ from the lipid concentrations at the edges of maximum growth of the <italic>A. palmata</italic> branches. This would indicate that large amounts of energy are being consumed near the borders of the partial mortality, which is similar to the expense that supports the accelerated growth in the tips of the branches in <italic>A. palmata</italic>. Despite the possibility that there are variations in physico-chemical properties between the three sites, the edges of the zones with partial mortality consistently exhibited lower lipid concentrations (Figure <xref ref-type="fig" rid="F8">8</xref>) even when the data are separated by site.</p>
<p>Based on our results, we infer that the explanation for the arrest or reduction of regeneration and the low amount of lipids at the edges of the lesions (Figure <xref ref-type="fig" rid="F8">8</xref>) is produced by a possible competitive relationship induced by the organisms that colonize the injured areas, rather than a mechanism to stop energy expenditure. The space exposed by the lesions, as analyzed in this study, was dominated by filamentous algae (38%) and fleshy algae (20%), which are organisms that are characterized by engaging in competitive relationships with coral species by activating chemical mechanisms that allow them to maintain the space they have gained and, if possible, to overgrow the coral. Their very presence represents a physical obstacle that prevents the adequate regeneration of injured areas (<xref ref-type="bibr" rid="B60">Titlyanov et al., 2005</xref>, <xref ref-type="bibr" rid="B59">2006</xref>) and promotes the accumulation of organic and inorganic sediment that in turn provides nutrients and support for algal development (<xref ref-type="bibr" rid="B45">Nugues and Roberts, 2003</xref>; <xref ref-type="bibr" rid="B58">Titlyanov and Titlyanova, 2008</xref>). This coincides with our results, because sediment, in addition to the algae, is the substrate that dominates the lesions with a median of around 20% (Figure <xref ref-type="fig" rid="F3">3</xref>). Therefore, the coral needs to activate defensive mechanisms, which require significant amounts of energy, and which would explain the results of the low amount of lipids at the borders of the lesions.</p>
<p>On the other hand, <xref ref-type="bibr" rid="B49">Oren et al. (1997</xref>, <xref ref-type="bibr" rid="B48">2001</xref>) also mentions that excessive energy expenditure such as that which occurs when regeneration is active can affect other processes such as reproduction and growth since they depend on the same reserves. This energy expenditure has been estimated at about 33% of the total available energy in the coral <italic>Porites porites</italic> (<xref ref-type="bibr" rid="B18">Edmunds and Davies, 1986</xref>). Such a sizeable energy expenditure would affect processes such as growth and reproduction. Therefore, taking into account our results where it is shown that old lesions continue to be large energy sinks, one would expect that these negative effects would continue even after the regeneration stopped. However, our results showed that growth is not affected in corals with partial mortality in any of the three sites sampled (Figure <xref ref-type="fig" rid="F4">4</xref>), which is unusual and differs from previous studies. For example, <xref ref-type="bibr" rid="B41">Meesters et al. (1994)</xref> found that lesions in <italic>Montastrea annularis</italic> reduced the growth capacity of the coral even after regeneration was stopped. <xref ref-type="bibr" rid="B2">Bak (1983)</xref> found that branches of <italic>A. palmata</italic> that presented lesions that were within 25 cm of the growth edge of the branch had considerably lower linear extension rates. However, if the lesion was located at more than 25 cm from the growth edge, there was no negative effect on its growth (<xref ref-type="bibr" rid="B2">Bak, 1983</xref>). This is a plausible explanation for the results obtained in this work since the position of the lesions analyzed were greater than 25 cm from the growth edge.</p>
<p>As seen from the results presented here, the presence of old partial mortality did affect some aspects of the reproductive process in <italic>A. palmata</italic> colonies. These colonies were capable of producing and releasing gametes. However, the volume of the eggs released in gamete bundles by corals suffering from partial mortality was significantly lower than eggs released by corals that were apparently healthy (<italic>p</italic> = 8.52e-15). The eggs were almost 20% lower in terms of volume. This result could be due to the energy imbalance produced by partial mortality on the coral such that the eggs from colonies suffering from old injuries have lower lipid contents. These eggs with lower energy reserves would be at a disadvantage during embryonic development and long-distance dispersal in comparison to eggs produced by apparently healthy colonies with larger reserves. Decreased energy reserves have also been found in adult corals that have previously bleached (<xref ref-type="bibr" rid="B30">Jones and Berkelmans, 2011</xref>). Bleached colonies produce fewer eggs with lower lipid levels compared to healthy colonies (<xref ref-type="bibr" rid="B63">Ward et al., 2000</xref>; <xref ref-type="bibr" rid="B57">Sudek et al., 2012</xref>).</p>
<p>The difference in egg size did not affect the ability to be fertilized (Figure <xref ref-type="fig" rid="F6">6A</xref>). In fact, fertilization percentage was on average higher and much less variable in colonies with signs of partial mortality than the fertilization percentage from apparently healthy colonies. Another process that was not affected by the volume of the eggs was abnormalities in the developing embryos (Figure <xref ref-type="fig" rid="F6">6B</xref>). This would indicate then, that while smaller, the eggs produced by colonies suffering from partial mortality were of equivalent quality to the eggs produced by apparently healthy colonies. However, small egg size may have post-developmental repercussions such as reduced dispersal distances, ability to settle and colony growth.</p>
<p>With the results of this work we can conclude that partial mortality does affect the coral <italic>A. palmata</italic> and the negative effect is observed mainly as a constant energy expenditure, due to the process of competition against the colonizing organisms occupying the injured area, which in turn causes a decrease in the common energy reserves for other processes. Although the results show no negative effects on growth, we did detect a significant effect on the reproductive capacity of corals, specifically in the volume of the eggs, however, due to the low sample size used here and the large variability of this process more studies are needed to confirm these results. Finally, it is important to bear in mind that partial mortality is a condition that remains over time, consuming large amounts of energy and possibly weakening the coral, so that it is very likely that its resistance will decrease in the face of future stress events.</p>
</sec>
<sec><title>Author Contributions</title>
<p>VP-G and AB developed the concept for this study and wrote the manuscript. VP-G conducted the field work, collected the data, and undertook statistical analyses.</p>
</sec>
<sec><title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This study was funded by project number 608 from the Instituto de Ciencias del Mar y Limnolog&#x00ED;a, Universidad National Aut&#x00F3;noma de M&#x00E9;xico as well as project numbers 153260 and 247765 from the Consejo Nacional de Ciencia y Tecnolog&#x00ED;a (Mexico) to AB. VP-G was supported by a postgraduate fellowship from the Consejo Nacional de Ciencia y Tecnolog&#x00ED;a (Mexico).</p>
</fn>
</fn-group>
<ack>
<p>We thank Dr. Andrea Grottoli for providing helpful advice and protocols on lipid extractions.</p>
</ack>
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