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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2021.705563</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Early Life-History Dynamics of Caribbean Octocorals: The Critical Role of Larval Supply and Partial Mortality</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Mart&#x00ED;nez-Quintana</surname> <given-names>&#x00C1;ngela</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1303607/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Lasker</surname> <given-names>Howard R.</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1373455/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Graduate Program in Evolution, Ecology and Behavior, University at Buffalo</institution>, <addr-line>Buffalo, NY</addr-line>, <country>United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Geology, University at Buffalo</institution>, <addr-line>Buffalo, NY</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Yehuda Benayahu, Tel Aviv University, Israel</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Francoise Cavada-Blanco, EDGE of Existence Programme, Conservation and Policy, Zoological Society of London, United Kingdom; Rafael A. Cabral-Tena, Ensenada Center for Scientific Research and Higher Education, Mexico</p></fn>
<corresp id="c001">&#x002A;Correspondence: &#x00C1;ngela Mart&#x00ED;nez-Quintana, <email>am298@buffalo.edu</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Coral Reef Research, a section of the journal Frontiers in Marine Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>07</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>8</volume>
<elocation-id>705563</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>05</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>08</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2021 Mart&#x00ED;nez-Quintana and Lasker.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Mart&#x00ED;nez-Quintana and Lasker</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Recruitment is a key demographic process for maintenance of local populations and recovery following disturbance. For marine invertebrates, distribution and abundances of recruits are impacted by spatiotemporal variation in larval supply, settlement rates and post-settlement survival. However, for colonial and modular organisms, differences in survival and growth between settlers and colonial recruits may also affect recruitment patterns. In the Caribbean, shifts in the benthic community structure favoring octocoral&#x2019;s have been detected, and recruitment has been suggested as key for octocoral&#x2019;s resilience. Hence, we studied octocoral recruitment dynamics, and evaluated the role of pre-settlement, settlement and post-settlement processes in recruit&#x2019;s densities. We performed the study at two sites with different octocoral densities, on the south coast of St. John, United States Virgin Islands, and distinguished between processes occurring to recently settled polyps and to colonial recruits. At both sites, we monitored <italic>P. homomalla</italic> settlers on settlement tiles for 3 months, and colonial recruits of two of the most abundant genera (<italic>Eunicea</italic> and <italic>Pseudoplexaura)</italic> for 3 years. In addition, we assessed whether recruits morphological traits affected recruitment and divided recruits of the genus <italic>Eunicea</italic> based on the presence of large calyces. The major contributor to both, single-polyps and colonial recruit densities was larval supply. Single-polyp densities were not limited by the availability of space, settlement cues, or early post-settlement survival. Height was the only predictor of survival and growth of colonial recruits, with potential growth rates increasing with height. However, large recruits suffered partial mortality often, distorting the relationship between recruit age and size, and causing most recruits to remain in the recruit size class (&#x2264;5 cm) longer than a year. Octocorals have been resilient to the conditions that have driven the decline of scleractinian corals throughout the Caribbean, and recruitment has been key to that success. Our results are crucial to understand early life history dynamics of Caribbean octocorals, and highlights the need to standardize the definition of recruit among colonial and modular taxa to facilitate inter-specific comparisons, and to understand future changes in coral reef community assemblages.</p>
</abstract>
<kwd-group>
<kwd>recruitment</kwd>
<kwd>larval supply</kwd>
<kwd>colonial</kwd>
<kwd>settlement</kwd>
<kwd>post-settlement survival</kwd>
<kwd>octocoral</kwd>
<kwd>resilience</kwd>
<kwd>partial mortality</kwd>
</kwd-group>
<contract-num rid="cn001">1756678</contract-num>
<contract-num rid="cn001">1801475</contract-num>
<contract-sponsor id="cn001">Division of Ocean Sciences<named-content content-type="fundref-id">10.13039/100000141</named-content></contract-sponsor><contract-sponsor id="cn002">Graduate Student Association, University at Buffalo<named-content content-type="fundref-id">10.13039/100007509</named-content></contract-sponsor>
<counts>
<fig-count count="10"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="123"/>
<page-count count="16"/>
<word-count count="15488"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="S1">
<title>Introduction</title>
<p>Recruitment influences population dynamics and the structure of local communities (<xref ref-type="bibr" rid="B65">Keough and Downes, 1982</xref>; <xref ref-type="bibr" rid="B95">Roughgarden et al., 1988</xref>; <xref ref-type="bibr" rid="B19">Caley et al., 1996</xref>). In marine hard bottom ecosystems, algae and invertebrates have complex life cycles starting life with a planktonic stage as larvae or propagules, then transitioning to the substratum as recruits, and developing into juveniles and adults. As a result, most marine hard-bottom communities have open populations, with local settlement dependent on larvae arriving from distant locations (<xref ref-type="bibr" rid="B96">Roughgarden et al., 1985</xref>). Complex larval behaviors and an array of biophysical interactions, determine the density of local settlers, after which, early post-settlement survival (i.e., survival until recruits reach the next stage, age, or size) further modifies local recruit densities (<xref ref-type="bibr" rid="B95">Roughgarden et al., 1988</xref>; <xref ref-type="bibr" rid="B44">Grosberg and Levitan, 1992</xref>; <xref ref-type="bibr" rid="B57">Hurlbut, 1992</xref>).</p>
<p>Whether recruitment of benthic marine invertebrates with open populations is limited by larval supply, or by settlement and early post-settlement processes has been the subject of research for decades (<xref ref-type="bibr" rid="B37">Gaines and Roughgarden, 1985</xref>; <xref ref-type="bibr" rid="B95">Roughgarden et al., 1988</xref>; <xref ref-type="bibr" rid="B89">Raimondi, 1990</xref>; <xref ref-type="bibr" rid="B19">Caley et al., 1996</xref>; <xref ref-type="bibr" rid="B76">Menge, 2000</xref>; <xref ref-type="bibr" rid="B62">Jonsson et al., 2004</xref>). Variability in local recruitment has been correlated to differences in larval supply for some species (<xref ref-type="bibr" rid="B37">Gaines and Roughgarden, 1985</xref>; <xref ref-type="bibr" rid="B95">Roughgarden et al., 1988</xref>; <xref ref-type="bibr" rid="B51">Hughes et al., 2000</xref>; <xref ref-type="bibr" rid="B43">Grorud-Colvert and Sponaugle, 2009</xref>; <xref ref-type="bibr" rid="B38">Gleason et al., 2018</xref>), and to settlement rates and/or early post-settlement mortality in other cases (<xref ref-type="bibr" rid="B65">Keough and Downes, 1982</xref>; <xref ref-type="bibr" rid="B56">Hunt and Scheibling, 1997</xref>; <xref ref-type="bibr" rid="B113">Vermeij and Sandin, 2008</xref>). Nevertheless, identifying the contribution of each stage in their recruitment still remains challenging, since each process is species-specific, context-specific, and scale-dependent (<xref ref-type="bibr" rid="B123">Young et al., 2005</xref>; <xref ref-type="bibr" rid="B85">Pineda et al., 2009</xref>; <xref ref-type="bibr" rid="B92">Ritson-Williams et al., 2009</xref>). For example, larval supply can be affected by adult reproductive strategies (e.g., brooded larvae vs. broadcasted gametes), by larval traits and pelagic larval duration, and by regional and local hydrodynamics (<xref ref-type="bibr" rid="B90">Raimondi and Morse, 2000</xref>; <xref ref-type="bibr" rid="B80">Nishikawa et al., 2003</xref>; <xref ref-type="bibr" rid="B84">Pineda et al., 2010</xref>). Settlement and early post-settlement survival can be impacted by the availability of suitable habitat, larval behavior, and space and/or resource competition within the local community (<xref ref-type="bibr" rid="B78">Mullineaux and Garland, 1993</xref>; <xref ref-type="bibr" rid="B56">Hunt and Scheibling, 1997</xref>; <xref ref-type="bibr" rid="B3">Arnold and Steneck, 2011</xref>). Consequently, the relative importance among larval supply, settlement and post-settlement processes in driving recruitment of many benthic marine invertebrates with open populations is not well understood.</p>
<p>Sessile colonial invertebrates with complex life cycles, and open populations, such as corals, gorgonians, hydroids, bryozoans, and colonial ascidians, often dominate marine benthic communities (<xref ref-type="bibr" rid="B118">Winston, 2010</xref>). The astogenetic shift from a solitary settler to a colonial recruit and the different methods used to assess and monitor recruitment add complexity to understand and to compare recruitment dynamics among colonial taxa. Millimeter-scale, solitary settlers, tend to suffer high mortality rates (<xref ref-type="bibr" rid="B30">Deevey, 1947</xref>; <xref ref-type="bibr" rid="B4">Babcock and Mundy, 1996</xref>; <xref ref-type="bibr" rid="B74">Linares et al., 2008</xref>; <xref ref-type="bibr" rid="B105">Trapon et al., 2013</xref>; <xref ref-type="bibr" rid="B31">Doropoulos et al., 2016</xref>), whereas centimeter-scale colonial recruits, can survive partial damage, and remain in the recruit size-class over longer periods of time. These effects are well known (<xref ref-type="bibr" rid="B53">Hughes and Jackson, 1980</xref>; <xref ref-type="bibr" rid="B52">Hughes and Connell, 1987</xref>; <xref ref-type="bibr" rid="B113">Vermeij and Sandin, 2008</xref>; <xref ref-type="bibr" rid="B35">Edmunds, 2017</xref>). However, logistical constraints have led to different methods to assess and monitor recruitment, and even to different definitions of &#x201C;recruit&#x201D; (<xref ref-type="bibr" rid="B61">Jenkins et al., 2009</xref>; <xref ref-type="bibr" rid="B85">Pineda et al., 2009</xref>). For example, many studies of scleractinian corals limit the definition of recruits to single-polyps, and they assess recruitment on settlement tiles (<xref ref-type="bibr" rid="B2">Adjeroud et al., 2017</xref> and references within). Other studies define as recruits all individuals below a certain size, e.g., &#x003C;5 cm<sup>2</sup> for scleractinian corals (<xref ref-type="bibr" rid="B113">Vermeij and Sandin, 2008</xref>), and &#x2264;5 cm tall for octocorals (<xref ref-type="bibr" rid="B34">Edmunds and Lasker, 2019</xref>), and quantify recruitment directly on the reef. Analyzing recruitment on settlement tiles does not differentiate between settlement and post-settlement processes. Whereas, defining recruits based on a certain size may lead to classifying as recruits older colonies (but small due to partial mortality), or to excluding from the recruit-size class larger recruits (due to inter-specific growth rates). Consequently, recruitment might be over or underestimated depending on the method. Therefore, performing comparisons among taxa and studies is difficult, and the effect of recruitment on changes on benthic invertebrates&#x2019; assemblages is poorly understood.</p>
<p>In the Caribbean, coral cover has decreased &#x223C;70% since 1970 (<xref ref-type="bibr" rid="B58">Jackson et al., 2014</xref>), and concomitantly species assemblages have changed in composition (<xref ref-type="bibr" rid="B41">Green et al., 2008</xref>; <xref ref-type="bibr" rid="B32">Edmunds, 2013</xref>). Transitions have favored macroalgae over scleractinian corals (<xref ref-type="bibr" rid="B49">Hughes, 1994</xref>; <xref ref-type="bibr" rid="B17">Bruno et al., 2009</xref>; <xref ref-type="bibr" rid="B93">Roff and Mumby, 2012</xref>). Nevertheless, taxa other than macroalgae have come to dominate the benthos on some reefs (<xref ref-type="bibr" rid="B81">Norstr&#x00F6;m et al., 2009</xref>), and several studies have reported increases in octocoral abundances (<xref ref-type="bibr" rid="B81">Norstr&#x00F6;m et al., 2009</xref>; <xref ref-type="bibr" rid="B97">Ruzicka et al., 2013</xref>; <xref ref-type="bibr" rid="B33">Edmunds and Lasker, 2016</xref>; <xref ref-type="bibr" rid="B107">Tsounis et al., 2018</xref>) or at least the maintenance of their populations (<xref ref-type="bibr" rid="B73">Lenz et al., 2015</xref>). The drivers of coral decline and lack of recovery on Caribbean reefs are complex. Among those drivers, elevated rates of mortality due to acute disturbances (i.e., hurricanes, bleaching events, and disease outbreaks), decline of key herbivores, and recruitment failure have been suggested as key factors impacting corals resilience (<xref ref-type="bibr" rid="B55">Hughes and Tanner, 2000</xref>; <xref ref-type="bibr" rid="B25">Crabbe et al., 2008</xref>; <xref ref-type="bibr" rid="B79">Mumby et al., 2007</xref>; <xref ref-type="bibr" rid="B1">Adam et al., 2015</xref>; <xref ref-type="bibr" rid="B50">Hughes et al., 2018</xref>). Similar to scleractinian corals, octocoral populations have declined after extreme climatic and bleaching events (<xref ref-type="bibr" rid="B87">Prada et al., 2010</xref>; <xref ref-type="bibr" rid="B97">Ruzicka et al., 2013</xref>; <xref ref-type="bibr" rid="B106">Tsounis and Edmunds, 2017</xref>; <xref ref-type="bibr" rid="B70">Lasker et al., 2020</xref>), but in contrast to scleractinian corals, they have persisted (<xref ref-type="bibr" rid="B97">Ruzicka et al., 2013</xref>; <xref ref-type="bibr" rid="B106">Tsounis and Edmunds, 2017</xref>; <xref ref-type="bibr" rid="B70">Lasker et al., 2020</xref>). The demographic processes involved in the recovery and maintenance of octocoral populations are not well understood (<xref ref-type="bibr" rid="B34">Edmunds and Lasker, 2019</xref>). However, previous studies have found a correlation between densities of octocoral adults and recruits (<xref ref-type="bibr" rid="B121">Yoshioka, 1996</xref>; <xref ref-type="bibr" rid="B88">Privitera-Johnson et al., 2015</xref>; <xref ref-type="bibr" rid="B8">Bartlett et al., 2017</xref>; <xref ref-type="bibr" rid="B34">Edmunds and Lasker, 2019</xref>), which suggests octocoral populations to be recruitment limited, as occurs in other taxa (<xref ref-type="bibr" rid="B23">Connell, 1985</xref>; <xref ref-type="bibr" rid="B42">Grigg, 1988</xref>). Differences in key demographic processes, such as larval supply, settlement, or post-settlement survival throughout the recruitment phase might greatly influence recruitment success (<xref ref-type="bibr" rid="B31">Doropoulos et al., 2016</xref>), but their relative importance in driving octocoral recruitment remains largely unknown.</p>
<p>Accurately characterizing recruitment of Caribbean octocorals is particularly urgent since it may be an important component of octocoral&#x2019;s resilience and to shifts in the benthic community structure observed in many Caribbean reefs (<xref ref-type="bibr" rid="B33">Edmunds and Lasker, 2016</xref>; <xref ref-type="bibr" rid="B70">Lasker et al., 2020</xref>). Hence, in this study, we characterized octocoral&#x2019;s recruitment dynamics and evaluated the contribution of pre-settlement, settlement, and post-settlement processes in determining recruit densities. We distinguished between settlement and post-settlement processes occurring to single-polyps, from post-settlement processes occurring to colonial recruits &#x2264;5 cm tall.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<p>We conducted this study at two shallow fringing reefs (6 &#x2013; 9 m depth) on the south shore of St. John, East Cabritte (18&#x00B0; 18.360&#x2032;N, 64&#x00B0; 43.140&#x2032;W) and Europa Bay (18&#x00B0; 19.016&#x2032;N, 64&#x00B0; 43.798&#x2032;W) (<xref ref-type="fig" rid="F1">Figure 1</xref>). These reefs are representative of shallow fringing reefs of St. John, and are similar to other reefs throughout the Caribbean (<xref ref-type="bibr" rid="B94">Rogers et al., 2008</xref>). The hard substratum at both sites is a mix of igneous rock, carbonate rock generated by scleractinian corals, and sand patches (<xref ref-type="bibr" rid="B91">Riding, 2002</xref>). The octocoral community composition at the sites is similar, with 30 species at East Cabritte and 31 at Europa Bay (<xref ref-type="bibr" rid="B107">Tsounis et al., 2018</xref>). Those species are common throughout the Caribbean and typically found on fringing reefs and reef flats (<xref ref-type="bibr" rid="B117">Williams et al., 2015</xref>). East Cabritte is more exposed to wave action and has lower sedimentation rates than Europa Bay (<xref ref-type="bibr" rid="B107">Tsounis et al., 2018</xref>). Octocoral densities are 15.9 &#x00B1; 0.5 colonies m<sup>2</sup> (mean &#x00B1; standard error) at East Cabritte and 7.6 &#x00B1; 0.2 colonies m<sup>2</sup> at Europa (<xref ref-type="bibr" rid="B70">Lasker et al., 2020</xref>). In 2017, the sites were impacted by Hurricanes Irma and Maria, but the hurricanes did not changed abundances at the sites (<xref ref-type="bibr" rid="B70">Lasker et al., 2020</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Map of study area in the Caribbean Sea, showing the study sites along the south shore of St John, United States Virgin Islands, Europa Bay (18&#x00B0;19.003N; 064&#x00B0;43.796W), and East Cabritte (18&#x00B0; 18.551N; 064&#x00B0; 43.129W).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-705563-g001.tif"/>
</fig>
<p>To understand the dynamics of single-polyp recruits we made fine-scale temporal observations of settlers at the two sites for 3 years, and combined those data with a settlement experiment, using <italic>Plexaura homomalla</italic> larvae in the laboratory, and the subsequent survival of those settlers after we transferred them to the reef.</p>
<p>To study recruitment dynamics of colonial recruits, we located, mapped, and monitored their survival and growth on natural substrate at both sites for 3 years. We monitored the survival and growth of colonial recruits of the genera <italic>Eunicea</italic> and <italic>Pseudoplexaura</italic>.</p>
<sec id="S2.SS1">
<title>Single-Polyp Densities on Settlement Tiles</title>
<p>To test whether single-polyp abundances on settlement tiles were different between sites and among years, we measured recruitment of single-polyps within a month of settlement at our study sites using custom made unglazed stoneware clay tiles (14 &#x00D7; 14 &#x00D7; 1 cm), deployed during the summer spawning period in 2017, 2018, and 2019. At each site, areas with similar densities of octocorals were selected and 30 tiles were installed approximately 1.5 m from each other over an area of 30 &#x00D7; 50 m. Coral larvae tend to settle on the undersides of tiles, and textured surfaces generally enhance settlement (<xref ref-type="bibr" rid="B18">Burt et al., 2009</xref>; <xref ref-type="bibr" rid="B82">Nozawa et al., 2011</xref>). Hence, we designed the settlement tiles with a flat upper surface, and a complex surface facing the substrate, with 1 cm diameter circular pits and 1 cm wide grooves, both 0.5 cm deep (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1A</xref>). We attached the tiles to the reef with threaded stainless-steel rods, epoxied into holes previously drilled in the substratum. Then, we positioned the tiles 5-8 cm above the substratum (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1D</xref>). At least 2 weeks prior to deployment, we seasoned the tiles in seawater under the dock at the Virgin Islands Environmental Resource Station (VIERS). We monitored single-polyp recruitment during the summer, when many of the Caribbean species spawn (<xref ref-type="bibr" rid="B63">Kahng et al., 2011</xref>). We placed the tiles on the reef &#x223C; 2 weeks before the full moon, and we retrieved them &#x223C; 2 weeks after, i.e., approximately 10 days after each inferred spawning event (see <xref ref-type="bibr" rid="B15">Brazeau and Lasker, 1989</xref>, <xref ref-type="bibr" rid="B16">1990</xref>; <xref ref-type="bibr" rid="B21">Coma et al., 1995</xref>). The sampling scheme allowed for octocoral settlement before turf algae and other macroinvertebrates overgrew the tiles, minimizing potential competition for space. We sampled in June and July in 2017 and 2018, and at the beginning and end of July in 2019. We also deployed and monitored tiles additional months, which varied between years (<xref ref-type="supplementary-material" rid="TS1">Supplementary Table 1</xref>). In October 2017, Hurricanes Irma and Maria destroyed 19 tiles at East Cabritte and 2 tiles at Europa Bay. Thus, in November 2017 we analyzed recruitment of single-polyps on 10 tiles at East Cabritte and 28 tiles at Europa Bay.</p>
<p>At the end of each deployment, we transported the tiles to the lab in containers filled with seawater. At the lab, we kept the tiles in individual containers with seawater and counted living octocoral polyps by eye. To test the accuracy of the counts, we randomly selected 15 tiles and inspected them under a dissecting microscope (20&#x00D7; magnification). There were no differences in the number of polyps found. After inspection, we bleached the tiles with a 10% dilution of commercial sodium hypochlorite solution for 24 h, decalcified them with 10% hydrochloric acid, and then conditioned them at 1 m depth under the dock at VIERS for 15 to 17 days before deploying them again. This process allowed the tiles to condition for &#x223C;4 weeks before settlement (2 weeks under VIERS dock and 2 weeks at each study site).</p>
<p>To test whether single-polyp abundances on settlement tiles were different between sites and among years, we built several generalized linear mixed-effects models (GLMM, &#x201C;lme4&#x201D; package in R; <xref ref-type="bibr" rid="B9">Bates et al., 2015</xref>) with a Poisson distribution and a logarithmic link function. Models included site (2 levels: East Cabritte and Europa Bay), and year (3 levels: 2017, 2018, 2019) as fixed effects, and sampling time (8 levels: June, July, 8-July, 30-July, August, September, October, November) and tile as random effects. To test the hypothesis, we selected the most parsimonious model, with the lowest Akaike Information Criterion (AIC). We could not test differences among all sampling periods and years due to lack of replication, but we tested whether the number of polyps at the peak of spawning each summer differed among years. Thus, we compared recruitment of single-polyps on tiles in July 2017, July 2018, and July 8, 2019 using a Generalized Linear Model (GLM) (R package &#x201C;MASS;&#x201D; <xref ref-type="bibr" rid="B111">Venables and Ripley, 2002</xref>) with a negative binomial distribution.</p>
</sec>
<sec id="S2.SS2">
<title>The Effect of Tile Conditioning on Larval Settlement</title>
<p>The abundance of single polyps we observed on the settlement tiles used to monitor early recruitment on the sites was the product of larval supply, settlement and post-settlement survival. We always deployed the tiles used to monitor local single-polyp densities (section above) at each site for 2 weeks before spawning. During those 2 weeks, site-specific marine biofilms (bacteria, archaea, fungi, protozoa, and unicellular microalgae) could have developed on the tiles (<xref ref-type="bibr" rid="B101">Shikuma and Hadfield, 2005</xref>; <xref ref-type="bibr" rid="B98">Salta et al., 2013</xref>; <xref ref-type="bibr" rid="B64">Kegler et al., 2017</xref>), impacting larval settlement (c.f., <xref ref-type="bibr" rid="B46">Hadfield, 2011</xref>). Therefore, we tested whether conditioning the tiles at each site had an effect on larval settlement by allowing larvae of a common octocoral, <italic>Plexaura homomalla</italic>, to settle on tiles preconditioned at each site. The collection and spawning of <italic>P. homomalla</italic> adult colonies, together with the conditions under which larvae were reared at the lab, have been described in detail in <xref ref-type="bibr" rid="B116">Wells et al. (2021)</xref>.</p>
<p>The tiles we used in this experiment were identical to those used to monitor single-polyp recruitment at the study sites. We conditioned ten tiles at each site for 16 days prior to the start of the experiment. At the start of the experiment, we placed the tiles in 12 L polypropylene containers with 10 &#x03BC;m filtered seawater at 29&#x00B0;C. Two tiles, both conditioned on the same reef, were placed in each container (5 containers per treatment were considered as replicates). We positioned the tiles 5 cm above the bottom with a rigid mesh cylinder, with the rugose surface facing down (<xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2B</xref>). A low flow of air from a Pasteur pipette placed along one side of the container circulated water in the containers. At the start of the experiment 300 <italic>P. homomalla</italic> larvae were added to each container. We changed 40% of the water in each container twice daily during the first 2 days, and then once daily until the completion of the experiment on day 10. During the first 7 days of the experiment, we changed the water with water filtered through a 10-&#x03BC;m wound string cartridge filter, and with water filtered through a 50-&#x03BC;m wound string cartridge filter the following 2 days. After 10 days, larvae were no longer visible in the seawater, and we counted all larvae that settled and metamorphose into polyps (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1C</xref>). We tested for differences in numbers of polyps that settled on tiles conditioned in the two sites with a Generalized Linear Mixed Effects Model (GLMM) using site as the fixed predictor (factor with 2 levels: East Cabritte and Europa Bay), and each container as a random effect.</p>
</sec>
<sec id="S2.SS3">
<title>Survival of Single-Polyp Recruits on Settlement Tiles</title>
<p>To assess survival of recruits after settlement at each study site, we monitored the survival of the <italic>P. homomalla</italic> polyps that settled on tiles in the laboratory settlement experiment described above. At the end of the settlement experiment, we carefully deployed the tiles to the reef where the tiles were conditioned. The majority of the polyps (78%) settled on the bottom of the tiles, and we counted them <italic>in situ</italic> at the time of deployment, and on days 2, 5, 9, 14, 19, and 59-62 after deployment. While on the reef, we observed the natural settlement of unknown octocoral species on the tiles (see <xref ref-type="bibr" rid="B116">Wells et al., 2021</xref>). In order to unambiguously follow survival, we mapped the position of each polyp on 5 randomly selected, but previously tagged, tiles at East Cabritte, and 3 tiles at Europa Bay on days 7 and 10, respectively. To map and monitor polyps, we drew a diagram of each settlement tile on which we recorded the position of each polyp. Survival of the mapped polyps was monitored on day 9 at East Cabritte, after which all mapped polyps were monitored on days 12, 14, 17, 19, and 59-62.</p>
<p>To test whether single-polyp survival differed between sites, we built a Mixed Effects Cox proportional hazards model with the coxme R package (<xref ref-type="bibr" rid="B103">Therneau, 2013</xref>). Site was a fixed effect and polyps and tiles random effects, with polyps nested within tiles. Cox regression models assume that each covariate has a relative effect in the hazard function that is constant over time (i.e., proportional hazard assumption), and its relative effect is constant over time. We tested whether the data met the proportional hazards assumption prior to the analysis, as well as the effect of outliers. We visualized the probability of survival over time with a Kaplan&#x2013;Meier (KM) log-rank survival curve using the &#x201C;survival&#x201D; R package (<xref ref-type="bibr" rid="B104">Therneau, 2014</xref>).</p>
</sec>
<sec id="S2.SS4">
<title>Composition, Abundance, and Size-Structure of Recruits on Reef Substrata</title>
<p>To characterize the density of single-polyp recruits and the density, composition and size-structure of colonial recruits (those larger than 1 polyp and up to 5 cm height) at the study sites, we surveyed, at each site, eight 50 &#x00D7; 50 cm quadrats placed randomly on the substratum along six, fixed 10-m long transects (separated by 10 m), i.e., 48 quadrats per site (see <xref ref-type="bibr" rid="B107">Tsounis et al., 2018</xref> for a description of the transects). The same observer (&#x00C1;MQ) conducted the surveys during June and July from 2016 to 2019. Single-polyps (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1E</xref>) and colonies up to 5 cm height were counted (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figures 1F-H</xref>). We analyzed the density of single-polyps, which cannot be identified with certainty, separately from colonial recruits, which were identified to genus in most cases. <italic>Eunicea</italic> spp. recruits, were grouped into two groups based on the presence or absence of large, prominent calyces. <italic>Eunicea</italic> large calyx recruits had, as the name indicates, large calyces and a stiff surface due to high sclerite density (<xref ref-type="bibr" rid="B11">Bayer, 1961</xref>). This group included <italic>E. calyculata, E. clavigera, E. tournefortii, E. laciniata, E. succinea, E. mammosa</italic>, and <italic>E. laxispica</italic> recruits. <italic>Eunicea</italic> spp. with small calyces had greater axial flexibility. This group included <italic>E. asperula, E. flexuosa, E. palmeri, E. pinta</italic>, and <italic>E. pallida</italic>. The average number of recruits 0.25 m<sup>&#x2013;2</sup> (&#x00B1;SD) was calculated for each genus/group, at each site and year.</p>
<p>Survival and growth of octocoral recruits has been related to their size (<xref ref-type="bibr" rid="B122">Yoshioka, 1998</xref>). Hence, we measured colonial recruit heights with calipers to 1 mm accuracy, and described the relative abundances of different size classes of colonial recruits from the two most abundant genera in our study sites, <italic>Eunicea</italic> and <italic>Pseudoplexaura</italic>. Recruits with 2-3 polyps were too small to be measured accurately, and their heights were approximated as being 3 mm. We classified colonial recruits into 4 size classes &#x003C;0.6 cm, 0.6 &#x2013; 1.1 cm, 1.2 &#x2013; 2 cm, 2.1 &#x2013; 5 cm, based on the 25th, 50th, 75th, and 100th percentiles of the size frequency distribution of recruits in our study sites. We calculated the relative abundance and the average number of recruits of each size class (&#x00B1;SD) within each genus, calyx size, site and year.</p>
<p>We compared single-polyp density on reef substrate between sites and years using GLMs with a negative binomial distribution, with site (2 levels: East Cabritte and Europa Bay) and year (4 levels: 2016, 2017, 2018, and 2019) as the predictors. We tested whether density and composition of colonial recruits between sites were different over the course of the study using Generalized Linear Models (GLM) with a Poisson distribution. We included the density of colonial recruits as the dependent variable and used year, genus (9 levels: <italic>Antillogorgia, Eunicea, Gorgonia, Muricea, Muriceopsis, Plexaura, Plexaurella, Pseudoplexaura, Pterogorgia</italic>), and site as predictors. In each case, we selected the models with the lowest Akaike Information Criterion (AIC). We performed a <italic>post hoc</italic> analysis of estimated marginal means (EMMs) (<xref ref-type="bibr" rid="B100">Searle et al., 1980</xref>) with the R package &#x201C;emmeans&#x201D; (<xref ref-type="bibr" rid="B72">Lenth et al., 2018</xref>) to test pairwise differences in the density of colonial recruit of different genera, between sites and among years. To perform the <italic>post hoc</italic> analyses, we log-transformed the data. We used Generalized Linear Models (GLM) with a negative binomial distribution to test whether recruit size structure of the two most abundant genera (2 levels: <italic>Eunicea</italic> and <italic>Pseudoplexaura</italic>) differed between sites and among years, whereas for <italic>Eunicea</italic> calyx size groups (2 levels: large calyx and small calyx) we used a GLM with a Poisson distribution. In both cases, we included recruit density (0.25 m<sup>2</sup>) in the models as the dependent variable and genus or calyx size group, size class (4 levels: &#x003C;0.6 cm, 0.6 -1.1 cm, 1.2 &#x2013; 2 cm, 2.1 &#x2013; 5 cm), site and year as predictors. Next, we performed <italic>post hoc</italic> analyses of EMMs to estimate pairwise differences on the size-frequency distribution of colonial recruits of different genera, and calyx sizes within and between sites and among years using log-transformed data.</p>
</sec>
<sec id="S2.SS5">
<title>Survival and Growth of Colonial Recruits</title>
<p>To assess survival and growth of colonial recruits, we followed the fate of 359 colonial recruits of <italic>Eunicea</italic> spp. and <italic>Pseudoplexaura</italic> spp. (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figures 1F-H</xref>). We mapped recruits along two 10 m transects at East Cabritte (192 recruits), and three 10 m transects at Europa Bay (167 recruits). To compare survival and growth between colonial recruits with different calyx sizes, we divided <italic>Eunicea</italic> spp. in two groups based on the presence of large calyces. In addition, we mapped and monitored 19 single-polyps of unknown genera. To map the recruits, we installed stainless steel rods at &#x223C;1 m intervals along the transects, and used them to locate the recruit by triangulation, measuring the distances of each recruit from 2 consecutive rods. At East Cabritte, we monitored 25 <italic>Eunicea</italic> spp. with large calyces, 83 <italic>Eunicea</italic> spp. with small calyces, 71 <italic>Pseudoplexaura</italic> spp. and 16 unknown, and at Europa, we monitored 44 <italic>Eunicea</italic> spp. with large calyces, 40 <italic>Eunicea</italic> spp. with small calyces, 80 <italic>Pseudoplexaura</italic>, and 3 unknown.</p>
<p>To test the effect of recruit height on survival and growth, we measured colony heights (cm), from August 2016 to August 2019 or until the recruit died. Initial measurements took place on 4 August 2016, and were repeated 6, 11, 15, 20, 23, 31, and 36 months later. It was impossible to locate and measure all recruits in a single day. Hence, we took the measurements within a maximum of 10 days. We calculated &#x201C;realized growth&#x201D; rates based on the average growth of all recruits. We calculated &#x201C;potential growth&#x201D; rates excluding those with negative growth and those for which there was evidence of partial mortality. Lastly, we tested whether partial mortality affected subsequent growth rates, and designated all growth measurements that occurred before an observation of negative growth as &#x201C;pre-damage&#x201D; and all measurements taken after observed negative growth as &#x201C;post-damage.&#x201D;</p>
<p>To test the effect of genus, morphology, and height on the survival of colonial recruits, we built Mixed Effects Cox proportional hazards models. One analysis incorporated genus (2 levels: <italic>Eunicea, Pseudoplexaura</italic>) and calyx size (2 levels: <italic>Eunicea</italic> large calyx; <italic>Eunicea</italic> small calyx) as time-independent covariates, while a separate model incorporated height as a time-dependent covariate. Site, recruit ID (i.e., each colonial recruit), height of the recruit in the time interval prior to dying, and the time-interval of the observation were incorporated as random effects. We selected the most parsimonious models using Akaike Information Criterion (AIC). None of the models incorporated the covariate &#x201C;damaged&#x201D; (2 levels: yes/no) because it was positively correlated with recruit height. Prior to analysis, we tested the proportional hazards assumption, the effect of influential observations, and the linearity of the covariate height. We removed colonial recruits from the analysis once they reached juvenile heights (&#x003E;5 cm). To visualize the risk of death (or the survival rate) due to recruit size we plotted the hazard ratio as a function of recruit height (cm). To visualize differences in survival over time for colonial recruits of different sizes we used Kaplan&#x2013;Meier (KM) log-rank survival curves of the 0th, 25th, 50th, 75th, and 100th height percentiles. We also used this analysis to obtain non-parametric estimates of the median survival time and standard deviations for colonial recruits in the 4 size classes (&#x003C;0.6 cm, 0.6 &#x2013; 1.1 cm, 1.2&#x2013; 2 cm, 2.1 &#x2013; 5 cm).</p>
<p>We examined the effects of genus, calyx size, and height, on potential and realized growth rates of colonial recruits using a series of regressions that also included the covariates site, time interval and year in the analyses. To test whether different genera differed on their potential growth rates, an initial set of models included genus, height, time interval (7 levels: From month 6 to 36), and site as predictors. To test whether recruits with different morphological traits differed in their potential growth rates another set of models included calyx size, height, time interval, and site as possible predictors. To test whether recruits of different genus or calyx size differed in partial mortality, we also built models using realized growth rates as the independent variable and as predictors all the covariates stated above, and including also the predictor &#x201C;damaged&#x201D; (2 levels: yes/no). To test the effect of calyx size, we used linear mixed effect models (LMMs), evaluated the covariates height, time interval, and each recruit as possible random effects, and selected the model with the lowest AIC. The lack of replication prevented us from using generalized linear mixed-effects models (GLMMs). To test the relevance of the covariates, genus, height, time interval, site, and &#x201C;damaged&#x201D; on realized growth we used stepwise algorithms on GLMs, and selected the models with the lowest AICs. We followed the same approach to test genus, height, time interval, and site as predictors of potential growth rates (using only data from recruits that never experienced negative growth).</p>
<p>We tested whether recruits of different genera or calyx size had different growth rates before and after partial damaged, i.e., negative growth. Additionally, we compared differences in growth rates between colonial recruits that never experienced partial mortality and growth rates of those that experienced negative growth (prior to damage). In both cases, we used GLMs with Gamma distributions, adding 1 to all values to eliminate the presence of zeros in the data set. To compare colonial recruits&#x2019; growth rates before and after being damaged we evaluated the covariates height and condition (2 levels: pre-damaged/post-damage) used as individual terms and as an interaction. Also, we tested weather growth rates of recruits that never suffered negative growth were different than those experiencing damage (prior to damage), and built GLMs including the covariates calyx size, genus, height, site, and &#x201C;damage&#x201D; as individual terms and as an interaction. In both cases, we selected the model with the lowest AIC to test our hypotheses.</p>
<p>Finally, we assessed whether the frequency of growth, zero-growth, or negative growth was different between recruits of different genera, calyx sizes, and size classes. To test the hypothesis that growth, zero-growth and negative growth was size-dependent, we partitioned the colonial recruit cohort into two size classes, above or below 1.1 cm, i.e., the median colonial recruit size. We performed Fisher&#x2019;s exact tests of independence, and, when necessary, a pairwise Fisher test to test whether the frequency of cases in the three growth categories was affected by the colonial recruit size class, genus, calyx size or site.</p>
</sec>
</sec>
<sec sec-type="results" id="S3">
<title>Results</title>
<p>The key results of each section below are summarized in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Summary of study results and corresponding figures and tables.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Results</td>
<td valign="top" align="left">Figures and Tables</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><bold>Settlement and survival on tiles</bold></td>
<td valign="top" align="justify"/>
</tr>
<tr>
<td valign="top" align="left">(1) Octocoral polyps recruited to tiles at East Cabritte in higher numbers than at Europa Bay</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F2">Figure 2</xref> and <xref ref-type="supplementary-material" rid="TS2">Supplementary Table 2.1</xref></td>
</tr>
<tr>
<td valign="top" align="left">(2) Conditioning tiles at different sites had no effect on settlement of <italic>P. homomalla</italic> planulae</td>
<td valign="top" align="left"><xref ref-type="supplementary-material" rid="TS3">Supplementary Table 3.1</xref></td>
</tr>
<tr>
<td valign="top" align="left">(3) Post-settlement survival of <italic>P. homomalla</italic> on settlement tiles did not differ between sites</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F3">Figure 3</xref> and <xref ref-type="supplementary-material" rid="TS3">Supplementary Table 3.2</xref></td>
</tr>
<tr>
<td valign="top" align="left"><bold>Recruitment on reef substrata</bold></td>
<td valign="top" align="justify"/>
</tr>
<tr>
<td valign="top" align="left">(4.1) Recruits were more abundant at East Cabritte than at Europa Bay each year</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F4">Figure 4</xref> and <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4</xref></td>
</tr>
<tr>
<td valign="top" align="left">(4.2) Single-polyp densities differed between sites and among years</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F4">Figure 4</xref> and <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.1</xref></td>
</tr>
<tr>
<td valign="top" align="left">(4.3) Colonial recruit densities differed between years, and between genera in a site-specific manner</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F5">Figure 5A</xref> and <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.2</xref></td>
</tr>
<tr>
<td valign="top" align="left">(4.4) Recruits of <italic>Eunicea</italic> and <italic>Pseudoplexaura</italic> spp. were the most abundant at both sites</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F5">Figure 5A</xref> and <xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2</xref></td>
</tr>
<tr>
<td valign="top" align="left">(5.1) After 36 months, only &#x223C; 6% (<italic>n</italic> = 17) of mapped recruits were alive</td>
<td valign="top" align="justify"/>
</tr>
<tr>
<td valign="top" align="left">(5.2) Only height was a significant predictor of recruit survival over time</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F7">Figures 7</xref>, <xref ref-type="fig" rid="F8">8</xref> and <xref ref-type="supplementary-material" rid="TS7">Supplementary Table 7</xref></td>
</tr>
<tr>
<td valign="top" align="left">(5.3) Growth rate varied with height but not between site and genera</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F9">Figure 9</xref> and <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.1</xref></td>
</tr>
<tr>
<td valign="top" align="left">(5.4) Potential growth rate increased with each additional cm in height</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F9">Figure 9</xref> and <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.1</xref></td>
</tr>
<tr>
<td valign="top" align="left">(5.5) Growth rates of recruits that experienced partial mortality decreased with each cm in height</td>
<td valign="top" align="left"><xref ref-type="fig" rid="F9">Figure 9</xref> and <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.3</xref></td>
</tr>
</tbody>
</table></table-wrap>
<p>(1) Single-polyp densities on settlement tiles:</p>
<p>Octocoral polyps recruited to tiles at East Cabritte in consistently higher numbers than at Europa Bay (<xref ref-type="fig" rid="F2">Figure 2</xref>. GLMM: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="TS2">Supplementary Table 2.1</xref>). At both sites, 99% of the recruits were observed on the underside of tiles, with counts ranging from 0 to 15 polyps tile<sup>&#x2013;1</sup> at East Cabritte, and from 0 to 5 at Europa Bay (<xref ref-type="fig" rid="F2">Figure 2</xref>). At East Cabritte, the greatest number of single-polyp recruits was found in July 2017, with 5.5 &#x00B1; 4.4 polyps tile<sup>&#x2013;1</sup> (mean &#x00B1; SD), and a median of 5 polyps tile <sup>&#x2013;1</sup> (<xref ref-type="fig" rid="F2">Figure 2</xref>). Comparing years, there were significantly fewer polyps tile<sup>&#x2013;1</sup> at East Cabritte in July 2018 compared to 2017, with 1.6 &#x00B1; 2.1 polyps tile<sup>&#x2013;1</sup> (mean &#x00B1; SD) and a median of 1 polyp tile<sup>&#x2013;1</sup> (<xref ref-type="fig" rid="F2">Figure 2</xref>. GLM: <italic>p</italic> &#x003C; 0.05 <xref ref-type="supplementary-material" rid="TS2">Supplementary Table 2.2</xref>). At Europa Bay, recruitment of single-polyps was zero most of the time, with the exceptions of September and November in 2017, and October in 2019, with the greatest number of single-polyp recruits found in November 2017, with 0.5 &#x00B1; 1.07 polyps tile<sup>&#x2013;1</sup> (mean &#x00B1; SD), and a median of 0.5 polyps tile <sup>&#x2013;1</sup> (<xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Boxplots comparing the median, 25th and 75th percentiles of polyps tile<sup>&#x2013; 1</sup> among sampling times, and between sites in 2017, 2018, and 2019. Note scales of the y-axes at each site are different, and settlement tiles were monitored different months each year. Recruitment, which was measured within 2 weeks of settlement, was consistently higher at East Cabritte than at Europa Bay each year (<italic>p</italic> &#x003C; 0.001). At East Cabritte, the number of polyps on the tiles decreased in July 2018 (<italic>p</italic> &#x003C; 0.01) and increased in July 8, 2019.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-705563-g002.tif"/>
</fig>
<p>(2) The effect of tile conditioning on larval settlement:</p>
<p>As on the tiles used to monitor recruitment in the field, the majority of <italic>P. homomalla</italic> polyps (78%) were found on the bottom of the tiles. Pre-conditioning the settlement tiles on different reefs had an effect on the settlement of <italic>P. homomalla</italic> larvae under laboratory conditions (GLMM: <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="TS3">Supplementary Table 3.1</xref>). We found higher settlement on tiles preconditioned at Europa Bay than at East Cabritte, with an average of 77.8 &#x00B1; 29.4 polyps tile<sup>&#x2013;1</sup> (mean &#x00B1; SD) and 61.6 &#x00B1; 16.3 polyps tile<sup>&#x2013;1</sup> (mean &#x00B1; SD), respectively.</p>
<p>(3) Survival of single-polyp recruits on settlement tiles:</p>
<p>Two hundred forty four polyps were monitored at East Cabritte, and 78 at Europa Bay on 5 and 3 tiles, respectively. Survival was not significantly different between sites (Coxme<italic>: p</italic> &#x003E; 0.05, <xref ref-type="supplementary-material" rid="TS3">Supplementary Table 3.2</xref>), and the Kaplan-Meier curve showed the probability of surviving up to 20 days was 85 &#x00B1; 0.02% (<xref ref-type="fig" rid="F3">Figure 3</xref>). Mortality among the 322 monitored polyps ranged from 0 to 2 polyps day<sup>&#x2013;1</sup>, with an average of 0.59 polyps day<sup>&#x2013;1</sup>. At the end of the experiment, on day 59, only 27 polyps at East Cabritte and 4 polyps at Europa Bay remained on the undersides of the tiles. Tiles were not surveyed between days 20 and 59. Thus, in <xref ref-type="fig" rid="F3">Figure 3</xref>, survivorship between those dates ranged from 72 &#x00B1; 2% to 7 &#x00B1; 2% in a single step.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Kaplan-Meier curve depicting survivorship of mapped single polyp recruits on settlement tiles at both sites on St. John United States Virgin Islands. The curve shows survivorship and 95% confidence intervals through 59 days. Time zero corresponds to the point in time when polyps were mapped on the tiles. The large drop in survivorship at 59 days reflects the cumulative loss of individuals between days 20 and 59.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-705563-g003.tif"/>
</fig>
<p>(4) Composition, abundance and size-structure of recruits on reef substrata:</p>
<p>Single-polyp densities differed between sites and among years (most parsimonious GLM model, <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.1</xref>). The most parsimonious GLM to evaluate the abundance and composition of colonial recruits included year, and the genus and site interaction (<xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.2</xref>). Recruits were more abundant at East Cabritte than at Europa Bay each year, independently of being single-polyps or colonial (<xref ref-type="fig" rid="F4">Figure 4</xref>. GLMs <italic>p</italic> &#x003C; 0.001. <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Boxplot comparing the median, 25th and 75th percentiles of single-polyp and colonial recruit abundances on reef substrata from 2016 to 2019. Abundances of single-polyps and colonial recruits were consistently higher at East Cabritte than at Europa Bay (<italic>p</italic> &#x003C; 0.001). The abundance of single-polyps and colonial recruits declined in 2018 (<italic>p</italic> &#x003C; 0.001), but at East Cabritte, colonial recruit abundances increased in 2019 (<italic>p</italic> &#x003C; 0.05).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-08-705563-g004.tif"/>
</fig>
<p>The maximum density of single-polyps occurred at East Cabritte in 2017, with 3.86 &#x00B1; 6.69 (mean &#x00B1; SD) polyps 0.25 m<sup>&#x2013;2</sup>, and a median of 2 polyps 0.25 m<sup>&#x2013;2</sup> (<xref ref-type="fig" rid="F4">Figure 4</xref>), whereas, at Europa Bay, the maximum density occurred in 2016, with 0.19 &#x00B1; 0.5 (mean &#x00B1; SD) polyps 0.25 m<sup>&#x2013;2</sup> and a median of zero polyps 0.25 m<sup>&#x2013;2</sup> (<xref ref-type="fig" rid="F4">Figure 4</xref>). In 2018, the summer following hurricanes Irma and Maria, the densities of single-polyps markedly declined, especially at East Cabritte, with 0.54 &#x00B1; 0.96 polyps 0.25 m<sup>&#x2013;2</sup> (mean &#x00B1; SD) and a median of 0 polyps 0.25 m<sup>&#x2013;2</sup> (<xref ref-type="fig" rid="F4">Figure 4</xref>. GLM: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.1</xref>). As for the single-polyp recruits, abundances of colonial recruits decreased in 2018 compared to previous years (<xref ref-type="fig" rid="F4">Figure 4</xref>. GLM: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.2</xref>). However, in contrast to single-polyps, they significantly increased in density in 2019 (<xref ref-type="fig" rid="F4">Figure 4</xref>. GLM: <italic>p</italic> &#x003C; 0.01, <xref ref-type="supplementary-material" rid="TS4">Supplementary Table 4.2</xref>). Indeed, the maximum density of colonial recruits occurred that year (2019) at both sites, with 6.9 &#x00B1; 4.5 recruits 0.25 m<sup>&#x2013;2</sup> (mean &#x00B1; SD), and a median of 6 recruits 0.25 m<sup>&#x2013;2</sup> at East Cabritte, and with 4.31 &#x00B1; 3.3 recruits 0.25 m<sup>&#x2013;2</sup> (mean &#x00B1; SD), and a median of 3 recruits 0.25 m<sup>&#x2013;2</sup> at Europa Bay (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
<p>The same 9 genera were present at both sites (<xref ref-type="fig" rid="F5">Figure 5A</xref>), and recruits of <italic>Eunicea</italic> spp. And <italic>Pseudoplexaura</italic> spp. Were the most abundant at both sites, each year (<xref ref-type="fig" rid="F5">Figure 5A</xref>. EMMs <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2</xref>). However, <italic>Antillogorgia</italic> spp., and <italic>Plexaura</italic> spp. recruits were more abundant at East Cabritte (<xref ref-type="fig" rid="F5">Figures 5A,B</xref>. EMMs: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2</xref>), whereas <italic>Gorgonia</italic> spp., <italic>Muricea</italic> spp., <italic>Muriceopsis</italic> spp., and <italic>Plexaurella</italic> spp. were more abundant at Europa Bay (<xref ref-type="fig" rid="F5">Figure 5A</xref>. EMMs: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2</xref>). At East Cabritte, <italic>Eunicea</italic> spp. recruits were more abundant than <italic>Pseudoplexaura</italic> spp., with maximum densities of 4.08 &#x00B1; 3.09 recruits 0.25 m<sup>&#x2013;2</sup> in 2019, and 1.36 &#x00B1; 1.56 recruits 0.25 m<sup>&#x2013;2</sup> (Mean &#x00B1; SD) in 2017, respectively (<xref ref-type="fig" rid="F5">Figure 5A</xref>. EMMs <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2</xref>). At Europa Bay, densities of <italic>Eunicea</italic> spp. And <italic>Pseudoplexaura</italic> spp. recruits were similar, reaching densities of 2.6 &#x00B1; 2.25 recruits 0.25 m<sup>&#x2013;2</sup> in 2019 (<xref ref-type="fig" rid="F5">Figure 5A</xref>. EMMs <italic>p</italic> &#x003E; 0.05, <xref ref-type="supplementary-material" rid="FS2">Supplementary Figure 2</xref>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Boxplots comparing the median, 25th and 75th percentiles abundances of colonial recruits 0.25 m<sup>&#x2013;2</sup> at East Cabritte and Europa Bay from 2016 to 2019. <bold>(A)</bold> compares abundances among the nine genera present at the study sites. <italic>Eunicea</italic> and <italic>Pseudoplexaura</italic>, highlighted in color, were the two most abundant genera at both sites, but they were more abundant at East Cabritte than at Europa Bay (<italic>p</italic> &#x003C; 0.001). Genera are alphabetically ordered in the <italic>x</italic>-axis. <bold>(B)</bold> depicts the abundances of <italic>Eunicea</italic> spp. recruits with two different morphological traits (<italic>Eunicea</italic> g1: recruits with prominent calyces and <italic>Eunicea</italic> g2: recruits without prominent calyces), with <italic>Eunicea</italic> g2 more abundant at East Cabritte, whereas <italic>Eunicea</italic> g1 were more abundant at Europa Bay (<italic>p</italic> &#x003C; 0.001).</p></caption>
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<p>The most parsimonious model describing the abundances of <italic>Eunicea</italic> spp. recruits with different calyx size included year, and the interaction between site and calyx size as predictors (<xref ref-type="supplementary-material" rid="TS5">Supplementary Table 5</xref>). At Europa Bay, the relative abundances of recruits with different calyx sizes were similar, with 0.41 &#x00B1; 0.69 recruits 0.25 m<sup>&#x2013;2</sup> (mean &#x00B1; SD) (EEMs <italic>p</italic> &#x003E; 0.05. <xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>). However, at East Cabritte <italic>Eunicea</italic> group <italic>2</italic> recruits (small calyces) were more abundant compared to <italic>Eunicea</italic> group <italic>1</italic> (large calyces) (<xref ref-type="fig" rid="F5">Figure 5B</xref>, EEMs <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>). In both sites, abundances of recruits of different calyx sizes did not change between 2016 and 2018. However, in 2019, abundances of recruits with both calyx sizes significantly increased to 0.9 &#x00B1; 1.27 recruits 0.25 m<sup>&#x2013;2</sup> (mean &#x00B1; SD) at Europa Bay, whereas only <italic>Eunicea group 2</italic> increased to 1.96 &#x00B1; 1.97 recruits 0.25 m<sup>&#x2013;2</sup> (mean &#x00B1; SD) at East Cabritte (<xref ref-type="fig" rid="F5">Figure 5B</xref>, EEMs <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>).</p>
<p>Size class structure of the colonial recruits varied between years, and genera, and there also was an interaction between site and size class (<xref ref-type="supplementary-material" rid="TS6">Supplementary Table 6.1</xref>). Similarly, the analysis of size class structure with respect to calyx morphology identified calyx size, and the interaction between sites and size class as the best predictors (<xref ref-type="supplementary-material" rid="TS6">Supplementary Table 6.2</xref>). Independent of genera and calyx morphology, recruits within the 0.6 &#x2013; 1.2 cm size-class were the most abundant at East Cabritte (<xref ref-type="fig" rid="F6">Figures 6A,B</xref>. EMMs <italic>p</italic> &#x003C; 0.001. <xref ref-type="supplementary-material" rid="FS4">Supplementary Figures 4A,B</xref>). Whereas at Europa Bay, recruits &#x003E; 2.1 cm were the most abundant (EMMs <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="FS4">Supplementary Figure 4.1</xref>).</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Stacked bar graphs depicting the size frequency distributions of colonial recruits at East Cabritte and Europa Bay from 2016 to 2019. <bold>(A)</bold> <italic>Eunicea</italic> spp. <italic>and Pseudoplexaura</italic> spp. recruits. <bold>(B)</bold> <italic>Eunicea</italic> calyx sizes <italic>Eunicea g1</italic> (With prominent calyces) and <italic>Eunicea g2</italic> (without prominent calyces). Independently of genus or calyx size, small recruits (&#x2264;1.1 cm tall) were proportionately more common at East Cabritte, while larger recruits (&#x003E;1.2 cm tall) were more common at Europa Bay (<italic>p</italic> &#x003C; 0.001).</p></caption>
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</fig>
<p>(5) Survival and growth of colonial recruits:</p>
<p>The positions of 359 colonial recruits present on the reefs at East Cabritte and Europa Bay were mapped in August 2016. In September 2017, Hurricanes Irma and Maria displaced some of the rods used to find the recruits, and 63 of them could not be located after summer 2017. After 36 months, only &#x223C; 6% (<italic>n</italic> = 17) of the initially mapped recruits were still alive.</p>
<p>There were no significant differences in survivorship between <italic>Eunicea</italic> spp., and <italic>Pseudoplexaura</italic> spp. (Coxme: <italic>p</italic> &#x003E; 0.05, <xref ref-type="supplementary-material" rid="TS7">Supplementary Table 7.1</xref>), or between colonial recruits with different calyx morphology (Coxme<italic>: p</italic> &#x003E; 0.05, <xref ref-type="supplementary-material" rid="TS7">Supplementary Table 7.2</xref>), and only their height influenced their survival (<xref ref-type="fig" rid="F7">Figure 7</xref>. Coxme: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="TS7">Supplementary Table 7.3</xref>). The hazard ratio of 0.75 indicates the risk of dying decreased by 25% with each additional cm of height (<xref ref-type="fig" rid="F7">Figure 7</xref> and <xref ref-type="supplementary-material" rid="TS7">Supplementary Table 7.3</xref>). The median survival time for recruits &#x2264; 1.1 cm tall was 11 months (<xref ref-type="fig" rid="F8">Figure 8</xref>), while the median survivorship of 2 and 5 cm tall recruits was 15 and 31 months, respectively. The probability of surviving 12 months ranged from 40% for the smallest size class (&#x003C;0.6 cm) to 76% for recruits &#x2264; 5 cm (<xref ref-type="fig" rid="F8">Figure 8</xref>).</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption><p>Proportional Hazard Ratio as a function of colonial recruit height. The Hazard ratio = 1 (equal hazard) when recruits height equals the mean height (1.1 cm).</p></caption>
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<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption><p>Kaplan-Meier curves depicting survivorship of colonial recruits of different sizes over time (assuming recruits do not change in size). Sizes correspond to the 25th, 50th, 75th, and 100th percentiles of colonial recruit heights in our areas of study. Confidence intervals are not depicted for visual clarity.</p></caption>
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</fig>
<p>We measured growth rates of colonial recruits for which there were multiple observations (<italic>N</italic> = 189). Fifty-seven recruits (&#x223C; 30%) displayed net negative growth, 16 (&#x223C; 8.5%) did not (<xref ref-type="fig" rid="F9">Figure 9</xref>) grow, and eleven (&#x223C; 6%) made it to the juvenile stage, i.e., grew above 5 cm. Four of those recruits (&#x223C; 2%) were alive until the end of the experiment, and the maximum height that we observed after 3 years was reached by a <italic>Pseudoplexaura</italic> sp. (18 cm). Growth rates ranged from &#x2013;1.3 cm/month to 0.7 cm month<sup>&#x2013;1</sup> (<xref ref-type="fig" rid="F9">Figure 9</xref>). The most parsimonious LMM model of growth included height as a random effect, nested within time interval (<xref ref-type="supplementary-material" rid="TS8">Supplementary Table 8.1</xref>). Genus, time interval, site and calyx size among <italic>Eunicea</italic> spp. were not informative in explaining variation in realized growth rates of colonial recruits.</p>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption><p>Realized growth rates as a function of height for colonial recruits that suffered (brown) and never suffered (red) partial mortality. The horizontal dashed lined represent no-growth.</p></caption>
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</fig>
<p>The model with the lowest AIC included height and time interval as predictors of potential growth (<xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.1</xref>). When the presence of damage was added to the analysis, the best model of realized growth rates included the covariate &#x201C;damage&#x201D; as both, an individual and an interaction term (<xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.2</xref>). Colonial recruits that never suffered partial mortality increased their growth rates by 0.04 cm/month with each additional cm in height (<xref ref-type="fig" rid="F9">Figure 9</xref>. GLM: <italic>p</italic> &#x003C; 0.001, <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.2</xref>). Conversely, the growth rates of recruits that experienced partial mortality, decreased by 0.07 cm/month with each cm in height (<xref ref-type="fig" rid="F9">Figure 9</xref>. GLM: <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.3</xref>). Additionally, potential growth rates decreased significantly during the time interval right after Hurricanes Irma and Maria in 2017 (GLM: <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.1</xref>), but we did not detect differences among other time intervals (GLM: <italic>p</italic> &#x003C; 0.05, <xref ref-type="supplementary-material" rid="TS9">Supplementary Table 9.1</xref>).</p>
<p>The final GLMs testing whether different genera or calyx morphologies had different growth rates before and after being damaged, included as predictors the terms calyx size, genus and &#x201C;condition&#x201D; (i.e., pre-damage vs. post-damage; <xref ref-type="supplementary-material" rid="TS10">Supplementary Table 10</xref>). In both cases, growth rates were similar before and after partial mortality (GLMs: <italic>p</italic> &#x003E; 0.05, <xref ref-type="supplementary-material" rid="TS10">Supplementary Table 10</xref>).</p>
<p>The most parsimonious GLM testing the effect of height and partial mortality on recruit growth rate included the interaction term height and partial mortality (<xref ref-type="fig" rid="F9">Figure 9</xref> and <xref ref-type="supplementary-material" rid="TS11">Supplementary Table 11.1</xref>), while, the best GLM testing the effect of genus and calyx size included two interaction terms, calyx size by partial mortality and genus by partial mortality (<xref ref-type="supplementary-material" rid="TS11">Supplementary Tables 11.2, 11.3</xref>).</p>
<p>Cases of zero net-growth were more common at East Cabritte than at Europa Bay (<italic>p</italic> &#x003C; 0.001), and we observed an absence of growth in the 28% of our surveys at the former site compared to 13% at Europa Bay (<xref ref-type="fig" rid="F10">Figure 10</xref>). This absence of growth at East Cabritte, impacted in particular recruits &#x003C; 1.2 cm tall (<xref ref-type="fig" rid="F10">Figure 10</xref>, <italic>p</italic> &#x003C; 0.05), whereas recruits &#x003E; 1.2 cm tall experienced negative growth more frequently (25-32% of the sampling times; <italic>p</italic> &#x003C; 0.05), independently of site, genera or calyx size.</p>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption><p>Proportions of events in which growth, zero-growth and negative growth were observed for colonial recruits smaller and larger than median recruit height (1.1 cm) at each study site. Negative growth, i.e., partial mortality, occurred more often to larger recruits (&#x003E;1.2 cm tall), independently of site, whereas we observed no-growth more frequently on smaller recruits at East Cabritte.</p></caption>
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</fig>
</sec>
<sec sec-type="discussion" id="S4">
<title>Discussion</title>
<p>Among benthic colonial taxa, the shift from a solitary to a colonial form adds a layer of complexity to their life histories and introduces trajectories in growth and size, such as partial mortality that are not available to unitary organisms. That complexity impacts the measurement and our understanding of recruitment. Definitions of recruitment generally have been operational (<xref ref-type="bibr" rid="B56">Hunt and Scheibling, 1997</xref>; <xref ref-type="bibr" rid="B113">Vermeij and Sandin, 2008</xref>), and studies of colonial taxa, have either followed single-polyps or used size to define the recruit life-history stage. By distinguishing single-polyps from the colonial recruits they develop into, we have identified larval supply as a major driver of octocoral densities in the earliest stages of recruitment, and partial mortality as a post-settlement process that uncouples the relationship between recruit age and size. By providing a comprehensive analysis of the recruitment phase for one of the most abundant taxa on Caribbean coral reefs, the present study facilitates future comparisons among benthic colonial taxa, and contributes to our understanding of their population dynamics.</p>
<sec id="S4.SS1">
<title>Single-Polyp Recruit Dynamics</title>
<p>We expected the supply of larvae to the sites would be similar, and local recruit densities would be driven mainly by settlement and post-settlement processes, as occurs for other marine invertebrate taxa (<xref ref-type="bibr" rid="B60">Jenkins, 2005</xref>; <xref ref-type="bibr" rid="B12">Bohn et al., 2013</xref>; <xref ref-type="bibr" rid="B47">Harper, 2017</xref>). Most octocorals at the study sites are broadcast spawners that release gametes that are fertilized and develop while being dispersed in the water column (<xref ref-type="bibr" rid="B63">Kahng et al., 2011</xref>). Developing embryos require days to develop and may spend several weeks in the water column (<xref ref-type="bibr" rid="B40">Graham et al., 2013</xref>; <xref ref-type="bibr" rid="B20">Coelho, 2018</xref>). The south coast of St. John is exposed to a generally westward flow of water. The study sites were &#x003C;2 km apart, both exposed to the swell that comes out of the southeast. In contrast to our expectations, we found larval supply was the primary predictor of single-polyp densities at both sites. Recruitment of single-polyps on the reef substratum at East Cabritte was two-fold higher than at Europa Bay. Those differences on single-polyp densities could have been driven by the absence of suitable habitat to settle, i.e., free space and settlement cues to metamorphose (<xref ref-type="bibr" rid="B45">Hadfield and Paul, 2001</xref>; <xref ref-type="bibr" rid="B3">Arnold and Steneck, 2011</xref>), or by different post-settlement survival at each site. However, we found a similar pattern on the settlement tiles we deployed each year. Furthermore, <italic>P. homomalla</italic> larvae settled successfully on tiles conditioned at each site, and settled in larger numbers on tiles preconditioned at Europa Bay, indicating differences in biofilms were not driving the patterns. Survival of the newly settled <italic>P. homomalla</italic> polyps was similar between sites. These results suggest the lower recruitment of single-polyps to tiles at Europa Bay than at East Cabritte was not limited by settlement and post-settlement processes, leaving supply as the most plausible explanation for the large difference in single-polyp densities between sites.</p>
<p>Factors that could account for the differences in supply to the sites include self-recruitment and differences in currents operating on scales of kilometers and less. Although self-recruitment can occur, even for species with potential for long-distance dispersal (<xref ref-type="bibr" rid="B24">Cowen and Sponaugle, 2009</xref>), the prevalent westward flow and the short distance between sites (&#x003C;2 km) suggests gametes from broadcast spawners would not develop quickly enough to self-recruit. Nonetheless, environmental factors such as wave exposure and coastal topography can lead to highly variable larval supply at small-scales (sites separated by 100 s meters) (<xref ref-type="bibr" rid="B37">Gaines and Roughgarden, 1985</xref>; <xref ref-type="bibr" rid="B56">Hunt and Scheibling, 1997</xref>; <xref ref-type="bibr" rid="B85">Pineda et al., 2009</xref>), and local eddies may have generated differences in the delivery of larvae between bays (<xref ref-type="bibr" rid="B77">Monismith, 2007</xref>).</p>
<p>We did not detect differences in the post-settlement survival of <italic>P. homomalla</italic> between sites and &#x223C; 95% of the polyps in the present study survived 15 days. The similarity in survival at the two sites, as well as the initially high survival, likely reflects the lack of competitors and perhaps resident predators on the tiles. Heterotrophic invertebrates can affect the survival of scleractinian coral settlers on artificial substratum (<xref ref-type="bibr" rid="B112">Vermeij, 2006</xref>; <xref ref-type="bibr" rid="B3">Arnold and Steneck, 2011</xref>), but those competitors were not present on our tiles, which had only been on the reef for 2 weeks. Survival shortly after settlement reported in other studies tends to be much lower than we observed (<xref ref-type="bibr" rid="B65">Keough and Downes, 1982</xref>; <xref ref-type="bibr" rid="B56">Hunt and Scheibling, 1997</xref>), and <xref ref-type="bibr" rid="B67">Lasker et al. (1998)</xref> reported 40% survival for polyps of <italic>Plexaura kuna</italic> in Panama (<xref ref-type="bibr" rid="B67">Lasker et al., 1998</xref>). In that study, polyps were subject to competition with heterotrophic invertebrates that were present on the settlement tiles and to predation, since the settlement plates were attached to the reef facing upwards. Similarly, <xref ref-type="bibr" rid="B36">Evans et al. (2013)</xref> observed high mortality of polyps on plates that were exposed to predators. In our experiment polyps settled mostly on the undersides of tiles that also had a variety of structural features, which were likely to provide protection against predation (<xref ref-type="bibr" rid="B31">Doropoulos et al., 2016</xref>). Our observations are important in characterizing the similarity of processes at the two sites, but over longer time scales, heterotrophic invertebrates become common on cryptic surfaces (<xref ref-type="bibr" rid="B59">Jackson, 1977</xref>), and competition under those conditions may be substantially lower.</p>
</sec>
<sec id="S4.SS2">
<title>Colonial Recruit Dynamics</title>
<p>Larger recruits survived longer and grew faster than smaller recruits. Previous studies of octocorals, scleractinians, and sponges have shown the relationship between survival and size is maintained across different life history stages, with adults having higher probability of survival than juveniles and recruits (<xref ref-type="bibr" rid="B5">Babcock, 1991</xref>; <xref ref-type="bibr" rid="B119">Yoshioka and Yoshioka, 1991</xref>; <xref ref-type="bibr" rid="B29">De Caralt et al., 2008</xref>; <xref ref-type="bibr" rid="B13">Borgstein et al., 2020</xref>, among others). Nevertheless, only a few studies have addressed the relationship between survival and size among colonies that can be considered recruits. We found the probability of surviving 1 year ranged between 32% (recruits &#x003C; 0.6 cm), and 74% (&#x2264;5 cm height). This is consistent with the general observation that size mediates the ability of benthic invertebrates to survive competition for space, escape predation, and avoid being smothered by sediment (<xref ref-type="bibr" rid="B59">Jackson, 1977</xref>; <xref ref-type="bibr" rid="B54">Hughes and Jackson, 1985</xref>; <xref ref-type="bibr" rid="B68">Lasker, 1990</xref>). Our result highlights the importance of size to survive the earliest stages of development.</p>
<p>Even though, the relationship between size and survival is common, the relationship between growth rate and size is not as obvious. We found an increase in potential growth rate by 4 mm y<sup>&#x2013;1</sup> with each cm in height. <xref ref-type="bibr" rid="B39">Goffredo and Lasker (2008)</xref> also found a positive relationship between size and growth in colonies of <italic>A. elisabethae</italic>, with colonies following a Von Bertalanffy growth curve (<xref ref-type="bibr" rid="B114">Von Bertalanffy, 1938</xref>). In contrast, <xref ref-type="bibr" rid="B120">Yoshioka (1994)</xref> did not find growth rate of octocorals to be dependent on size, and similarly, other studies have found intra and inter-specific growth rates of scleractinian recruits to be highly variable and independent of size (<xref ref-type="bibr" rid="B112">Vermeij, 2006</xref>; <xref ref-type="bibr" rid="B35">Edmunds, 2017</xref>). Monitoring the colonies only once a year (<xref ref-type="bibr" rid="B112">Vermeij, 2006</xref>; <xref ref-type="bibr" rid="B35">Edmunds, 2017</xref>), and calculating net growth instead of potential (<xref ref-type="bibr" rid="B120">Yoshioka, 1994</xref>; <xref ref-type="bibr" rid="B112">Vermeij, 2006</xref>), and in the case of scleractinians disparities between measuring growth as surface areas vs. linear extension, may had masked the relationship between growth rate and size. Further assessments of the effects of size on recruit growth should be designed at shorter temporal scales, should differentiate between potential and net growth rates (but see <xref ref-type="bibr" rid="B35">Edmunds, 2017</xref>), and use measures of colony size that closely track biomass.</p>
<p>We did not specifically test whether growth rate affected survival, but we found that larger recruits grow faster and survive longer than smaller recruits. In contrast, <xref ref-type="bibr" rid="B35">Edmunds (2017)</xref> did not find growth rate to be a strong predictor of survival for small scleractinian coral colonies (&#x2264;4 cm wide). Since growth rate affects the time required for a recruit to &#x201C;escape in size&#x201D; (<xref ref-type="bibr" rid="B53">Hughes and Jackson, 1980</xref>; <xref ref-type="bibr" rid="B5">Babcock, 1991</xref>; <xref ref-type="bibr" rid="B75">Meesters et al., 1997</xref>), our results, as well as previous studies, indicate processes such as growth rate and survival are not independent, but synergistic, and in the case of octocoral recruits, the synergy is a fundamental component of their life history strategy.</p>
<p>While reaching larger sizes is generally beneficial for survival, larger size in colonial organisms is also associated with a greater risk of partial mortality (<xref ref-type="bibr" rid="B53">Hughes and Jackson, 1980</xref>; <xref ref-type="bibr" rid="B52">Hughes and Connell, 1987</xref>; <xref ref-type="bibr" rid="B102">Stocker, 1991</xref>; <xref ref-type="bibr" rid="B108">Turon et al., 1998</xref>; <xref ref-type="bibr" rid="B112">Vermeij, 2006</xref>), which also may affect survival. In our study, larger recruits grew faster and survived longer, but they also had a greater risk of negative growth (i.e., partial mortality) than smaller recruits. For instance, 87% of the colonial recruits that survived the first year persisted in the &#x201C;recruit&#x201D; size class for more than a year. Partial mortality was presumably caused by grazers, but in most cases, we were not able to identify the source of the damage. Larger recruits were often able to survive partial mortality, as we observed scar tissue on several recruits. Regeneration after injury has been positively correlated to colony size among octocorals, scleractinian corals, and sponges (<xref ref-type="bibr" rid="B22">Connell, 1973</xref>; <xref ref-type="bibr" rid="B6">Bak, 1977</xref>; <xref ref-type="bibr" rid="B115">Wahle, 1983</xref>; <xref ref-type="bibr" rid="B86">Plucer-Rosario and Randall, 1987</xref>; <xref ref-type="bibr" rid="B48">Harriott and Fisk, 1988</xref>; <xref ref-type="bibr" rid="B10">Bavestrello et al., 1997</xref>). Larger colonies can allocate greater amounts of energy to the injured part of the colony, increasing regeneration rates after losing tissue (<xref ref-type="bibr" rid="B83">Oren et al., 2001</xref>). Furthermore, regeneration after tissue loss may be fast among octocorals. For example, regeneration rates of 6.0 - 7.8 mm d<sup>&#x2013;1</sup>, 6.8-8.6 mm d<sup>&#x2013;1</sup>, and even 10.6 mm d<sup>&#x2013;1</sup>, have been measured experimentally for large colonies of the octocorals <italic>Eunicea mammosa, Plexaura homomalla</italic> (<xref ref-type="bibr" rid="B115">Wahle, 1983</xref>), and <italic>Eunicea flexuosa</italic> (<xref ref-type="bibr" rid="B26">da Silveira and Van&#x2019;t Hof, 1977</xref>). However, surviving partial mortality may impact survival by keeping recruits in a vulnerable size class for longer periods of time, and in our study, uncoupled the relationship between recruit age and height.</p>
<p>Our use of 5 cm as the height separating recruits from &#x201C;juvenile&#x201D; colonies is a compromise that inevitably includes colonies that are more than a year old and excludes colonies that grow over 5 cm in their first year. We only observed 3 recruits that grew 5 cm in their first year, indicating the 5 cm cut-off did not exclude many 1-year old colonies among the species that we observed recruiting. The combination of slow growth and partial mortality indicates that many colonies that are older than a year will be identified as recruits using the 5 cm upper height limit. Six of the 17 recruits that survived the entire 3-year span of the study never reached 5 cm height. Reducing the upper size limit of recruits to 3 cm would exclude many but not all older colonies as 13% of the colonies exhibited growth rates of &#x2264;3 cm in a year. The magnitude of this effect is undoubtedly site specific as different communities are likely to have different mixes of fast and slow growing species and there is no reason to expect that the incidence of partial mortality will be similar on all reefs. Thus, defining octocoral recruits based on a maximum height yields a recruitment rate that is not an instantaneous measure, but is rather a running average of the abundance of &#x201C;recruits&#x201D; that incorporates the processes affecting the initial settlement of individuals and their subsequent survival and growth over several years. Our results are similar to those reported by <xref ref-type="bibr" rid="B35">Edmunds (2017)</xref> for small scleractinian coral colonies, where small colonies, that on the basis of size could be characterized as recruits, were instead up to 7 years old. Changes in the abundance of individuals in these &#x201C;recruit&#x201D; classes are indicative of changes in the input of colonies to the population. Although not a true measure of a recruitment rate, it is important to differentiate this size class of octocorals due to the different rates of survival and growth associated with these small colonies. True measures of recruitment require methodologies that can identify which individuals are new to a site and surveys that sample at high enough frequency to quantify the effects of each spawning event. For octocorals, which spawn during multiple months throughout the year, and whose single-polyp recruits do not leave a skeleton after dying, this will require monthly sampling of recruitment on tiles, or natural substrata surveys in which all new individuals are either marked or removed (<xref ref-type="bibr" rid="B71">Lasker and Porto-Hannes, 2020</xref>).</p>
</sec>
<sec id="S4.SS3">
<title>Evidence for Octocoral Recruitment Success on Contemporary Caribbean Reefs</title>
<p>The environmental stressors that have contributed to the dramatic decline of scleractinian coral populations, also affect octocorals, but unlike scleractinian corals, octocoral communities have proven to be resilient to those stressors, and successfully recruit. Recruitment was high in our study, and we only observed a decrease in recruit densities in the year following hurricanes Irma and Maria. Although methodological discrepancies among studies make comparisons difficult, our results suggest octocoral recruits may be better suited for the current conditions on Caribbean reefs than scleractinian coral recruits. As for scleractinian corals, survival of single-polyps was low, with 91% mortality over 2 months. Nonetheless, survival of colonial recruits ranged between 40 and 74%, whereas Edmunds reported survival rates of 23-50% for juvenile corals on reefs close to our areas of study (2000). Moreover, the potential growth rates we found for octocoral recruits (&#x2264;2.1 cm y<sup>&#x2013;1</sup>) were markedly higher than those reported by Edmunds (&#x2264;8 mm y<sup>&#x2013;1</sup>) in 2000, and comparable to the 1.0 to 3.4 cm y<sup>&#x2013;1</sup> growth rates reported for small scleractinian coral colonies in Cura&#x00E7;ao and Bonaire in the late 1970s and early 1980s (<xref ref-type="bibr" rid="B7">Bak and Engel, 1979</xref>; <xref ref-type="bibr" rid="B109">Van Moorsel, 1985</xref>, <xref ref-type="bibr" rid="B110">1988</xref>). Macroalgae such as <italic>Lobophora variegata</italic> and <italic>Dictyota pulchella</italic>, which are detrimental to scleractinian coral survival and growth (<xref ref-type="bibr" rid="B14">Box and Mumby, 2007</xref>), are dominant components of contemporary coral reefs across the Caribbean. The rapid vertical growth of octocorals may be advantageous to minimize competition against macroalgae or other benthic invertebrates (<xref ref-type="bibr" rid="B54">Hughes and Jackson, 1985</xref>; <xref ref-type="bibr" rid="B119">Yoshioka and Yoshioka, 1991</xref>; <xref ref-type="bibr" rid="B99">Sanchez, 2004</xref>; <xref ref-type="bibr" rid="B14">Box and Mumby, 2007</xref>).</p>
<p>Studies of scleractinian corals suggest that environmental stresses are leading to the replacement of previously competitive dominant species by stress-tolerant, fast-growing, weedy, generalist taxa (<xref ref-type="bibr" rid="B27">Darling et al., 2012</xref>, <xref ref-type="bibr" rid="B28">2013</xref>). While octocorals exhibit depth and habitat differentiation (<xref ref-type="bibr" rid="B66">Kinzie, 1973</xref>; <xref ref-type="bibr" rid="B69">Lasker and Coffroth, 1983</xref>), many of the most abundant species at our study sites are found in a variety of environments, indicating this community may be more resistant to environmental change. Moreover, the similar survival of recruits that we found at sites with different environmental conditions, highlights the ability of octocorals to colonize and persist in diverse environments.</p>
</sec>
</sec>
<sec sec-type="conclusions" id="S5">
<title>Conclusion and Caveats</title>
<p>Our observations and experiments suggest larval supply was the main driver of local densities of octocoral single-polyps and colonial recruits at our study sites. Survival of both single-polyps and colonial recruits did not differ between sites. Among colonial recruits only size was important in predicting their survival, growth rate and partial mortality. As the pattern of larval supply also matches adult abundance at the two sites, it suggests the populations are recruitment limited.</p>
<p>The detailed characterization of the fates of single polyp and colonial recruits highlights the complexity of assessing recruitment when sampling intervals are longer than the time required for a single polyp to develop into a colony. Such sampling schemes require the inclusion of colonial recruits, but differences in growth rates as colonies grow, coupled with partial mortality results in a &#x201C;recruit&#x201D; class that mixes colonies of different ages. The recruit class, defined in this manner, may be more analogous to a seed or seedling bank where there are individuals of varying ages all capable of growing into a larger size class if given the opportunity.</p>
<p>How future environmental change due to global warming will impact octocoral assemblages is poorly understood. Predicting those effects requires a clearer understanding of any advantages that octocoral recruits may have relative to other taxa. Further studies that identify the interactions between octocoral recruits and other benthic invertebrates should include how octocoral morphology and/or vertical growth influences the outcome of those interactions. Understanding the resilience of octocoral communities to environmental change also requires the study of processes affecting adults as well as those affecting recruitment. For instance, large scale mortality of adult octocorals could jeopardize larval supply. Further research that links the different life-history stages (e.g., recruits vs. juveniles vs. adults) is needed to identify the drivers of population growth of octocorals. Demographic approaches such as matrix models and integral projection models coupled with biophysical models of connectivity offer the potential to address these issues. Moreover, to understand shifts of community assemblages on Caribbean reefs, future research needs to identify the drivers of population growth not only on octocorals and scleractinian corals but also on other dominant taxa (i.e., sponges and macroalgae).</p>
</sec>
<sec sec-type="data-availability" id="S6">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>&#x00C1;M-Q collected the data and analyzed the results. Both authors conceptualized and conducted the study, and wrote and approved the submitted version of the manuscript.</p>
</sec>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="S8">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information">
<title>Funding</title>
<p>This research has been funded by the National Science Foundation grants OCE1756381 and OCE1801475, and by funding awarded to &#x00C1;M-Q by the Mark Diamond Research Fund (Graduate Student Association at the University at Buffalo).</p>
</sec>
<ack>
<p>We thank the staff of the University of the Virgin Islands, Virgin Islands Environmental Resource Station, logistical support in the field and Aran Mooney (Woods Hole Oceanographic Institute) for the use of <italic>Scalywag</italic>. We also thank the many students and volunteers from the University at Buffalo, who contributed to manufacturing the settlement tiles. Special thanks to Jacqueline Krawiecki, Christopher Wells and Kaitlyn Tonra for providing help and support during the field work and the data collection. Thanks to Peter Edmunds (California State University Northridge) not only for the logistics in the field, but also for providing insightful and helpful comments throughout the project and for reviewing the last versions of the manuscript. In addition, we also thank Mary Alice Coffroth, Adam Wilson (University at Buffalo), and Lorenzo Bramanti (CNRS-LECOB Observatoire Oceanologique Banyuls sur Mer) for their comments and reviews on the later stages of the manuscript.</p>
</ack>
<sec id="S10" sec-type="supplementary material"><title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2021.705563/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2021.705563/full#supplementary-material</ext-link></p>
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