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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2023.1113879</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Enhancement of turbulence and nutrient fluxes within an Eastern Boundary Upwelling Filament: a diapycnal entrainment approach</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Estrada-Allis</surname>
<given-names>Sheila N.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1248716"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rodr&#xed;guez-Santana</surname>
<given-names>&#xc1;ngel</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/716261"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Naveira-Garabato</surname>
<given-names>Alberto C.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Garc&#xed;a-Weil</surname>
<given-names>Luis</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2171305"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Arcos-Pulido</surname>
<given-names>Mireya</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Emelianov</surname>
<given-names>Mikhail</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1994069"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Physical Oceanography, Ensenada Center for Scientific Research and Higher Education (CICESE), Ensenada</institution>, <addr-line>Baja California</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Departamento de F&#xed;sica, Facultad de Ciencias del Mar, Universidad de Las Palmas de Gran Canaria (ULPGC)</institution>, <addr-line>Las Palmas de Gran Canaria</addr-line>, <country>Spain</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>National Oceanography Centre, University of Southampton</institution>, <addr-line>Southampton</addr-line>, <country>United Kingdom</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Physical and Technological Oceanography, Instituto de Ciencias del Mar (CSIC)</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Weifeng (Gordon) Zhang, Woods Hole Oceanographic Institution, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Jonathan Nash, Oregon State University, United States; Shuang-Xi Guo, Chinese Academy of Sciences (CAS), China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Sheila N. Estrada-Allis, <email xlink:href="mailto:sheila@cicese.mx">sheila@cicese.mx</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>07</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1113879</elocation-id>
<history>
<date date-type="received">
<day>01</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>15</day>
<month>05</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Estrada-Allis, Rodr&#xed;guez-Santana, Naveira-Garabato, Garc&#xed;a-Weil, Arcos-Pulido and Emelianov</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Estrada-Allis, Rodr&#xed;guez-Santana, Naveira-Garabato, Garc&#xed;a-Weil, Arcos-Pulido and Emelianov</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The filaments of the African Eastern Boundary Upwelling System (EBUS) are responsible for feeding nutrients to the oligotrophic waters of the northeastern Atlantic. However, turbulent mixing associated with nutrient uplift in filaments is poorly documented and has been mainly evaluated numerically. Using microstructure profiler measurements, we detected enhanced turbulent kinetic energy dissipation rates (<italic>&#x3b5;</italic>) within the Cape Ghir upwelling filament. In contrast to previous studies, this enhancement was not related to symmetrical instabilities induced by down-front winds but to an increase in vertical current shear at the base of the mixed layer (<inline-formula>
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</inline-formula>). In order to quantify the impact of vertical shear and the influence of the active mixing layer depth (<inline-formula>
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</inline-formula>. This provided suitable conditions for the entrainment of cold, nutrient-rich waters from below the filament pycnocline and the upward transport of biophysical properties to the upper boundary layer of the front. We also found that diapycnal nutrient fluxes in stations influenced by the filament (1.35 mmol m<sup>-2</sup> d<sup>-1</sup>) were two orders of magnitude higher than those of stations not affected by the filament front (0.02 mmol m<sup>-2</sup> d<sup>-1</sup>). Despite their importance, the effects of vertical shear and <inline-formula>
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</inline-formula> have often been neglected in entrainment parameterizations. Thus, a modified entrainment parameterization was adapted to include vertical shear and observed <italic>&#x3b5;</italic>, which are overestimated by existing parameterizations. To account for the possible role of internal waves in the generation of vertical shear, we considered internal wave scaling to parameterize the observed dissipation. Using this adapted parameterization, the average entrainment velocities were six times (6 m d<sup>-1</sup>) higher than those obtained with the classic parameterization (1 m d<sup>-1</sup>).</p>
</abstract>
<kwd-group>
<kwd>upwelling filament</kwd>
<kwd>diapycnal mixing</kwd>
<kwd>active mixing</kwd>
<kwd>turbulent</kwd>
<kwd>entrainment</kwd>
<kwd>entrainment parameterization</kwd>
</kwd-group>
<counts>
<fig-count count="14"/>
<table-count count="3"/>
<equation-count count="12"/>
<ref-count count="82"/>
<page-count count="20"/>
<word-count count="11852"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Physical Oceanography</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Phytoplankton productivity is limited by nutrient availability, especially in oligotrophic areas such as subtropical gyres. In Eastern Boundary Upwelling Systems (EBUS), filaments are examples of frontal systems that are able to supply nutrients from below the pycnocline to the upper boundary layer of the ocean. Moreover, cold and nutrient-rich water that is upwelled along the coast can be transported offshore by filaments, which are typically narrow <inline-formula>
<mml:math display="inline" id="im7">
<mml:mi mathvariant="script">O</mml:mi>
</mml:math>
</inline-formula> (10 km) and elongated <inline-formula>
<mml:math display="inline" id="im8">
<mml:mi mathvariant="script">O</mml:mi>
</mml:math>
</inline-formula> (100 km) structures with vertical extensions of ~100 m. These structures are often located near coastline irregularities (<xref ref-type="bibr" rid="B38">Hagen et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B69">Sangr&#xe0; et&#xa0;al., 2015</xref>) and identifiable by low surface temperatures and high chlorophyll-a concentrations (<xref ref-type="bibr" rid="B69">Sangr&#xe0; et&#xa0;al., 2015</xref>).</p>
<p>The pycnocline usually outcrops within filaments, producing sharp differences in the upper layer of the ocean with respect to the characteristics of the surrounding waters, which are generally well-mixed (<xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>; <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>; <xref ref-type="bibr" rid="B3">Arcos-Pulido et&#xa0;al., 2014</xref>). These thermohaline fronts affect the lateral buoyancy gradient, thus providing suitable conditions for diapycnal mixing through mechanisms such as vertical shear. Diapycnal mixing associated with submesoscale frontal systems is particularly important given that it involves the exchange of surface heat, buoyancy fluxes, and the vertical transport of tracers, such as nutrients, from below the pycnocline to surface waters (e.g., <xref ref-type="bibr" rid="B40">Hales et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B52">Li et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B3">Arcos-Pulido et&#xa0;al., 2014</xref>).</p>
<p>Despite the importance of these ubiquitous structures, few studies have analyzed how turbulence may be enhanced within filaments using turbulent kinetic energy (TKE) dissipation rates (<inline-formula>
<mml:math display="inline" id="im9">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) obtained with direct microstructure measurements. <xref ref-type="bibr" rid="B18">Dewey et&#xa0;al. (1993)</xref> observed elevated subsurface <inline-formula>
<mml:math display="inline" id="im10">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, which they attributed to mean shear turbulence generated within submesoscale structures known as minifilaments. Other observations of microstructures have suggested that surface-induced mixing may be enhanced by the proximity of filament fronts, resulting in strong horizontal density gradients that can help maintain the frontal system (<xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>). Other authors have suggested that two-dimensional turbulence is generated by symmetrical instabilities due to the low potential vorticity of down-front winds and/or atmospheric buoyancy loss (e.g., <xref ref-type="bibr" rid="B13">D&#x2019;Asaro et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B77">Thomas et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B65">Peng et&#xa0;al., 2020</xref>). Collectively, these studies demonstrate that turbulence in the upper boundary layer may be notably enhanced within filaments; however, the mechanisms responsible for this enhanced turbulence remain unclear.</p>
<p>From a one-dimensional (1D) point of view, there are three primary TKE sources that control turbulence in the upper boundary layer (<xref ref-type="bibr" rid="B58">Niiler and Kraus, 1977</xref>): (<italic>i</italic>) wind stirring, (<italic>ii</italic>) convection forces, and (<italic>iii</italic>) vertical shear due to horizontal currents at the base of the mixed layer. These three sources are balanced by the dissipation term, which represents the main TKE sink. In order to close the system of equations of the 1D TKE budget, the entrainment rate (<inline-formula>
<mml:math display="inline" id="im11">
<mml:mrow>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) must be considered, which is a temporal rate of change of themixed layer depth (e.g., <xref ref-type="bibr" rid="B58">Niiler and Kraus, 1977</xref>; <xref ref-type="bibr" rid="B12">Cronin and McPhaden, 1997</xref>; <xref ref-type="bibr" rid="B80">Wade et&#xa0;al., 2011</xref>) that describes the turbulent and diapycnal velocity acting at the base of the mixed layer. Turbulent entrainment increases <inline-formula>
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<mml:mrow>
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</inline-formula>, decreases temperature, and transports hydro-physical properties, such as heat, salinity, and nutrients, between the upper and lower ocean layers. This is particularly important in upwelling regions given that entrainment helps to upwell nutrient-rich waters from below the pycnocline to the nutrient-poor upper layers. Thus, entrainment can be viewed as a proxy of TKE sources and sinks that control turbulence from the pycnocline through the upper boundary layer.</p>
<p>The parameterization of entrainment through a 1D TKE budget has been widely used in many bulk mixed layer models (e.g., <xref ref-type="bibr" rid="B15">Deardorff, 1983</xref>; <xref ref-type="bibr" rid="B32">Gaspar, 1988</xref>; <xref ref-type="bibr" rid="B47">Jacob and Shay, 2003</xref>; <xref ref-type="bibr" rid="B57">Nagai et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B67">Samson et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B53">Liu et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B33">Giordani et&#xa0;al., 2013</xref>). However, the study of entrainment is itself challenging because its contributions are often overwhelmed by large-scale motions. In recent decades, considerable efforts have been made to elucidate entrainment behavior through laboratory experiments (e.g., <xref ref-type="bibr" rid="B49">Khanta et&#xa0;al., 1977</xref>; <xref ref-type="bibr" rid="B15">Deardorff, 1983</xref>; <xref ref-type="bibr" rid="B26">Fernando, 1991</xref>; <xref ref-type="bibr" rid="B64">Pelegr&#xed; and Richman, 1993</xref>; <xref ref-type="bibr" rid="B46">Jackson and Rehmann, 2014</xref>), modeling setups (e.g., <xref ref-type="bibr" rid="B47">Jacob and Shay, 2003</xref>; <xref ref-type="bibr" rid="B74">Sun and Wang, 2008</xref>) and observational studies (e.g., <xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>; <xref ref-type="bibr" rid="B2">Anis and Moum, 1994</xref>; <xref ref-type="bibr" rid="B57">Nagai et&#xa0;al., 2005</xref>). However, discrepancies in <inline-formula>
<mml:math display="inline" id="im14">
<mml:mrow>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
</mml:msub>
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</inline-formula> values are apparent when comparing different entrainment parameterizations (<xref ref-type="bibr" rid="B15">Deardorff, 1983</xref>; <xref ref-type="bibr" rid="B2">Anis and Moum, 1994</xref>; <xref ref-type="bibr" rid="B47">Jacob and Shay, 2003</xref>).</p>
<p>Only a few studies have focused on the characterization of vertical turbulent entrainment in upwelling filament systems, and these have produced contradictory results. <xref ref-type="bibr" rid="B17">Dewey and Moum (1990)</xref> showed that wind-induced turbulent entrainment is less efficient in the warm sides of filaments than in their cold sides, where the pycnocline outcrops near the surface. These authors also suggested that entrainment could act to maintain a cool surface signature in upwelling filaments. In another study, <xref ref-type="bibr" rid="B18">Dewey et&#xa0;al. (1993)</xref> argued that diapycnal turbulent processes associated with minifilaments are less important than local upwelling or frontogenesis mechanisms. However, it is likely that both processes are related (<xref ref-type="bibr" rid="B23">Estrada-Allis et&#xa0;al., 2019</xref>). Indeed, the temporal evolution of vertical velocity suggests that vertical mixing can modulate the magnitude of the ageostrophic term, with elevated near-surface mixing enhancing the vertical velocity.</p>
<p>In another study, <xref ref-type="bibr" rid="B36">Grodsky et&#xa0;al. (2008)</xref> used satellite observations of equatorial Atlantic upwelling to demonstrate that thermocline shoaling associated with elevated wind strength increases the entrainment of cold, nutrient-rich water to the mixed layer, leading to phytoplankton blooms. Using a regional model, <xref ref-type="bibr" rid="B33">Giordani et&#xa0;al. (2013)</xref> found that entrainment does not contribute to the development of the Atlantic cold tongue. Although these studies have notably improved our understanding of entrainment, the sources that control the TKE balance in the upper boundary layer and consequently turbulent entrainment remain poorly understood.</p>
<p>In this study, we refer to the upper boundary layer as the region comprising both the mixed layer depth (<inline-formula>
<mml:math display="inline" id="im15">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) and mixing layer depth (<inline-formula>
<mml:math display="inline" id="im16">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>). The latter is the depth at which active mixing processes operate (<xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>). Some studies have indicated that <inline-formula>
<mml:math display="inline" id="im17">
<mml:mrow>
<mml:msub>
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</inline-formula> may play an important role in highly dynamic areas like frontal systems. This is relevant because the vertical transport of heat, momentum, and hydrophysical material within the upper boundary layer is controlled by turbulent mixing (<xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>; <xref ref-type="bibr" rid="B10">Cisewski et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B75">Sutherland et&#xa0;al., 2014</xref>), with important and consequences for phytoplankton blooms (<xref ref-type="bibr" rid="B30">Franks, 2014</xref>).</p>
<p>This study focuses on the filament generated near Cape Ghir, which forms part of the African EBUS (e.g., <xref ref-type="bibr" rid="B37">Hagen, 2001</xref>). This recurrent filament is one of the major filaments of the Canary Current Upwelling System (<xref ref-type="bibr" rid="B38">Hagen et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B62">Pelegr&#xed; et&#xa0;al., 2005a</xref>; <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>) and is able to transport biogeochemical properties offshore more effectively than wind-driven Ekman transport (<xref ref-type="bibr" rid="B1">&#xc1;lvarez Salgado et&#xa0;al., 2007</xref>). Moreover, the Cape Ghir filament is involved in both onshore and offshore export export (<xref ref-type="bibr" rid="B70">Santana-Falc&#xf3;n et&#xa0;al., 2020</xref>) and is responsible for up to 63% of the total annual primary production attributed to coastal upwelling (e.g., <xref ref-type="bibr" rid="B31">Garc&#xed;a-Mu&#xf1;oz et&#xa0;al., 2005</xref>). The long-lived (&gt;3 months) westward-propagating mesoscale eddies generated in the Eddy Canary Corridor (<xref ref-type="bibr" rid="B68">Sangr&#xe0; et&#xa0;al., 2009</xref>) can interact with the Cape Ghir filament, exporting nutrients and carbon to the oligotrophic interior regions of the northeastern Atlantic.</p>
<p>The generation of the Cape Ghir filament can be explained by the combined effects of baroclinic instability from the filament jet, seafloor topography, and wind near the cape, which act to deflect the filament offshore (<xref ref-type="bibr" rid="B37">Hagen, 2001</xref>; <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>; <xref ref-type="bibr" rid="B78">Troupin et&#xa0;al., 2012</xref>). Due to the enhancement of turbulent mixing within filaments, our primary objective was to investigate the primary TKE sources and sinks within and outside of the Cape Ghir upwelling filament in the upper ocean through an analysis of the bulk 1D TKE balance. Using novel observations of <inline-formula>
<mml:math display="inline" id="im18">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> for this region, we analyzed where turbulent mixing takes place and how it relates to the three primary sources of turbulence at the surface by means of an entrainment parameterization. We also evaluated the importance of diapycnal nutrient fluxes at the base of the mixed layer and focused on vertical shear and dissipation as important TKE sources and sinks, respectively. These analyses were conducted using meteorological, hydrographic, and satellite data and microstructure turbulent profiles.</p>
<p>In this study, we show that actual turbulent entrainment parameterizations could be underestimating entrainment rates in highly dynamic areas dominated by mesoscale structures. These low diapycnal velocities will lead to an underestimation of the vertical transport of nutrients and physical properties from the base of the mixed layer to the upper boundary layer of Cape Ghir filament and other similar filaments associated with EBUS.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Observational data</title>
<p>The hydrographic data used in this study were obtained from a survey of the Cape Ghir region in northwestern Africa, which formed part of the project &#x201c;Mixing Processes in the Canary Basin (PROMECA)&#x201d; (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The survey was conducted aboard the <italic>R/V Garc&#xed;a del Cid</italic> in early fall (18&#x2013;29 October 2010) when the Trade Winds typically weaken. Conductivity-temperature-depth (CTD), expendable bathythermograph (XBT), and microstructure data were collected at stations located approximately 10 km apart from one another along three transects (A, B, and C in <xref ref-type="fig" rid="f1"><bold>Figure 1</bold></xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Bathymetry (500 m contour) of the Cape Ghir region and hydrographic sampling stations located around the upwelling filament during October 2010. The region delimited by the black dashed lines encompasses the hydrographic stations surveyed in this study and is shown in greater detail in the inset at the bottom right corner of the figure. Black squares indicate conductivity-temperature-depth (CTD) and Acoustic Doppler Current Profiler (ADCP) stations. White dots indicate microstructure stations. Black dots indicate expendable bathythermograph (XBT) stations. The station numbers appear next to each station, and the transects <bold>(A&#x2013;C)</bold> are shown as solid lines.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g001.tif"/>
</fig>
<p>Wind speed, instantaneous wind speed, wind direction, air temperature, water temperature, relative humidity, air pressure, and incoming solar radiation were recorded at ~2-min intervals by a meteorological station installed onboard the ship. To remain consistent with hydrographic station measurements, the meteorological data were averaged over 2-h intervals (i.e., the time resolution of the CTD profiles).</p>
<p>During the cruise, current velocity data were also collected nearly continuously with a vessel-mounted 75 KHz Ocean Surveyor Acoustic Doppler Current Profiler (SADCP; Teledyne Technologies, Thousand Oaks, CA, USA). The data were processed with Common Ocean Data Access System (CODAS) software (<xref ref-type="bibr" rid="B28">Firing et&#xa0;al., 1995</xref>) to obtain vertical bin sizes of 10 m averaged over 2-h periods. An SBE911 plus CTD (Sea-Bird Scientific, Bellevue, WA, USA) was used to produce temperature, salinity, and density profiles (1 dbar vertical resolution). Between each CTD station, vertical temperature profiles were also obtained with XBT Sippican T5 probes (Lockheed Martin, Bethesda, MD, USA) that transmitted to 2000 m depth. The temperature profiles obtained with the XBT probes were smoothed using a classic, low-pass Butterworth filter. A comparison of the CTD and XBT temperature profiles revealed a discrepancy of approximately 10 m. Although uncommon, this offset has been observed in similar studies of the Cape Ghir filament (<xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>). The results of this study are based on CTD rather than XBT vertical profiles.</p>
<p>A TurboMAP-L microstructure profiler <xref ref-type="bibr" rid="B81">Wolk et al. (2002)</xref> was used to obtain profiles of <inline-formula>
<mml:math display="inline" id="im19">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. The TurboMAP-L is a vertical free-fall profiler that carries microstructure sensors, including two shear probes and an FP07 thermistor, CTD sensors, and internally mounted accelerometers. The profiler freely falls at a speed of ~0.7 m s<sup>-1</sup> while sampling at a rate of 512 Hz. All data were binned at 2-m intervals down to ~470 m depth and processed using TMTools v. 3.04 A.</p>
<p>The location, evolution, and coverage of the Cape Ghir upwelling filament during the survey were determined <italic>via</italic> sea surface temperature (SST) and chlorophyll-a (Chl) satellite images (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>) obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors of the AQUA and TERRA satellites. Satellite images were also downloaded from Ocean Color Web (<ext-link ext-link-type="uri" xlink:href="http://oceancolor.gsfc.nasa.gov">http://oceancolor.gsfc.nasa.gov</ext-link>). Geostrophic surface currents were derived from the sea level anomaly provided by the AVISO altimeter products at a spatial resolution of 1/4&#xb0; &#xd7; 1/4&#xb0;, which were downloaded with OpenDAP from the AVISO Website (<ext-link ext-link-type="uri" xlink:href="http://www.aviso.altimetry.fr/en/home.html">http://www.aviso.altimetry.fr/en/home.html</ext-link>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Snapshots of <bold>(A)</bold> sea surface temperature (SST, &#xb0;C) from MODIS-Terra for 21 October 2010 at 14:25 h and <bold>(B)</bold> chlorophyll-a (Chl, mg m<sup>-3</sup>) from MODIS-Aqua for 20 October 2010 at 13:45 h. Superimposed vectors denote the magnitude and direction of the geostrophic velocity field for the same days derived with AVISO Sea Level Anomaly data (1/4&#xb0;horizontal resolution). Both transect A and B are shown as solid black lines. Black dots indicate conductivity-temperature-depth (CTD) and Acoustic Doppler Current Profiler (ADCP) stations. The white dots indicate microstructure stations.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g002.tif"/>
</fig>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Microstructure data processing</title>
<p>To obtain <inline-formula>
<mml:math display="inline" id="im20">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, we first removed spikes from the turbulence profiles to obtain the shear fluctuation power spectrum, <inline-formula>
<mml:math display="inline" id="im21">
<mml:mrow>
<mml:mi>&#x3c8;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>k</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>, from the fall speed of the profiler, where <italic>k</italic> is the wavenumber determined from its fall speed. Assuming isotropic turbulence <xref ref-type="bibr" rid="B41">Hinze, 1979</xref>, observed <inline-formula>
<mml:math display="inline" id="im22">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> was estimated by integrating <inline-formula>
<mml:math display="inline" id="im23">
<mml:mrow>
<mml:mi>&#x3c8;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>k</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> within an appropriate wavenumber range following the methods of <xref ref-type="bibr" rid="B59">Oakey (1982)</xref>:</p>
<disp-formula>
<label>(1)</label>
<mml:math display="block" id="M1">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>15</mml:mn>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:mfrac>
<mml:mi>&#x3bd;</mml:mi>
<mml:munderover>
<mml:mo>&#x222b;</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>k</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>k</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
</mml:mrow>
</mml:munderover>
<mml:mi>&#x3c8;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>k</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>k</mml:mi>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>v</italic> is the molecular viscosity coefficient with a value of 1 &#xd7; 10<sup>-6</sup> m<sup>2</sup>s<sup>-1</sup> and <inline-formula>
<mml:math display="inline" id="im24">
<mml:mrow>
<mml:msub>
<mml:mi>k</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the lowest cutoff wavenumber, which was set to 1 cpm given the physical scale of the microstructure shear probe. In contrast, the upper limit of integration, <inline-formula>
<mml:math display="inline" id="im25">
<mml:mrow>
<mml:msub>
<mml:mi>k</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, is the highest vertical wavenumber free of noise and is usually taken to be the Kolmogorov wavenumber <inline-formula>
<mml:math display="inline" id="im26">
<mml:mrow>
<mml:msub>
<mml:mi>k</mml:mi>
<mml:mi>c</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>&#x3b5;</mml:mi>
<mml:msup>
<mml:mi>&#x3bd;</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo stretchy="false">/</mml:mo>
<mml:mn>4</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>. After segmenting each microstructure profile within vertical bin sizes of 2 m, the observed shear spectrum was fitted to the Nasmyth empirical universal spectra for turbulence (<xref ref-type="bibr" rid="B59">Oakey, 1982</xref>; <xref ref-type="bibr" rid="B81">Wolk et&#xa0;al., 2002</xref>). This spectrum is considered to be representative of the spectral form of oceanic turbulence and is commonly used to verify shear spectrum measurements. An example of micro-shear power spectral density <inline-formula>
<mml:math display="inline" id="im27">
<mml:mrow>
<mml:mi>&#x3c8;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>k</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> and Nasmyth spectra can be seen in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref> for a depth range of 43 to 45 m at station 24. Given that records of micro-scale velocity shear can be contaminated by noise (e.g., mechanical vibration of the instrument and the influence of the rope at the surface) until the probe reaches a quasi-constant free-falling velocity, the data within the first 16 m of the water column were removed. In addition, the vertical profiles of <inline-formula>
<mml:math display="inline" id="im29">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> can exhibit large variability over short time periods. As such, the casts were repeated at least twice at each station.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Shear power spectral density, <italic>&#x3c8;</italic>(<italic>k</italic>) (red solid line), for station 24 from the PROMECA-cruise for a depth range (<italic>z</italic>) of 43 to 45 m. The Nasmyth universal spectra is shown as a dashed black line. The turbulent kinetic energy (TKE) dissipation rate, <inline-formula>
<mml:math display="inline" id="im28">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>, is averaged over the z range. The dotted thin lines indicate the 0.95% confidence interval for the power spectral density calculation. At the bottom, <italic>k</italic> represents the wavenumber in cycles per minute (cpm).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g003.tif"/>
</fig>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Surface fluxes and meteorological-related quantities</title>
<p>To assess the relationship between atmospheric forcing and upper ocean turbulence, meteorological data were used to compute the net surface heat flux (<inline-formula>
<mml:math display="inline" id="im30">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) as the sum of four individual components <inline-formula>
<mml:math display="inline" id="im31">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>a</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, where <inline-formula>
<mml:math display="inline" id="im32">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> is the net shortwave radiation flux, which is the main contributor to <inline-formula>
<mml:math display="inline" id="im33">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> during daytime and was directly obtained from the on-board meteorological station. Net longwave radiation (<inline-formula>
<mml:math display="inline" id="im34">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) was determined with the equation of <xref ref-type="bibr" rid="B7">Berliand and Berliand (1952)</xref>:</p>
<disp-formula>
<label>(2)</label>
<mml:math display="block" id="M2">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>&#x3c3;</mml:mi>
<mml:msubsup>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
<mml:mn>4</mml:mn>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>0.39</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>0.5</mml:mn>
<mml:msub>
<mml:mrow>
<mml:msqrt>
<mml:mi>e</mml:mi>
</mml:msqrt>
</mml:mrow>
<mml:mi>a</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>c</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>4</mml:mn>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>&#x3c3;</mml:mi>
<mml:msubsup>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
<mml:mn>3</mml:mn>
</mml:msubsup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>s</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <inline-formula>
<mml:math display="inline" id="im35">
<mml:mrow>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mn>0.985</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> is the longwave emissivity from from <xref ref-type="bibr" rid="B19">Dickey et&#xa0;al. (1994)</xref>, <inline-formula>
<mml:math display="inline" id="im36">
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>5.67</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>8</mml:mn>
</mml:mrow>
</mml:msup>
<mml:msup>
<mml:mtext>m</mml:mtext>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:msup>
<mml:mtext>K</mml:mtext>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>4</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> is the Stefan-Boltzman constant, <inline-formula>
<mml:math display="inline" id="im37">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the air temperature measured at a height of 10 m above the sea surface, <inline-formula>
<mml:math display="inline" id="im38">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>s</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the surface water temperature, <inline-formula>
<mml:math display="inline" id="im39">
<mml:mrow>
<mml:msub>
<mml:mi>e</mml:mi>
<mml:mi>a</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is vapor pressure, and <inline-formula>
<mml:math display="inline" id="im40">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>c</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the cloud correction factor with values that range from 0.4 to 1 during daytime, as the sky was mostly clear throughout the study. The sensible heat flux (<inline-formula>
<mml:math display="inline" id="im41">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) and latent heat flux (<inline-formula>
<mml:math display="inline" id="im42">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>a</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) were determined by using the Tropical Ocean Global Atmosphere Coupled Ocean-Atmosphere Response Experiment <italic>TOGA-COARE</italic> code available in the Matlab Air&#x2013;Sea toolbox (version 3.0; <ext-link ext-link-type="uri" xlink:href="http://sea-mat.whoi.edu">http://sea-mat.whoi.edu</ext-link>) developed by the air-sea fluxes science group of the TOGA COARE project, which is a version of the bulk flux described in <xref ref-type="bibr" rid="B24">Fairall et&#xa0;al. (1996)</xref>.</p>
<p>Once the net surface heat fluxes were obtained, we computed the net surface buoyancy flux (<inline-formula>
<mml:math display="inline" id="im43">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) as:</p>
<disp-formula>
<label>(3)</label>
<mml:math display="block" id="M3">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>+</mml:mo>
<mml:mi>g</mml:mi>
<mml:mi>&#x3b2;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>E</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>P</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>o</mml:mi>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>g</italic> is acceleration due to gravity, <inline-formula>
<mml:math display="inline" id="im44">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the specific heat capacity of seawater (<inline-formula>
<mml:math display="inline" id="im45">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:mn>3.98</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mn>3</mml:mn>
</mml:msup>
<mml:mo>&#xb1;</mml:mo>
<mml:mn>0.42</mml:mn>
<mml:msup>
<mml:mrow>
<mml:mtext>J&#xa0;kg</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb0;</mml:mo>
<mml:msup>
<mml:mtext>C</mml:mtext>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>), <italic>&#x3b1;</italic> is the thermal expansion coefficient of seawater (<inline-formula>
<mml:math display="inline" id="im46">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b1;</mml:mi>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:msub>
</mml:mrow>
<mml:mo>=</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> 2.58 &#xd7; 10<sup>-4</sup> &#xb1; 6.92 &#xd7; 10<sup>-6</sup>&#xb0;C<sup>-1</sup>), <italic>&#x3b2;</italic> is the haline contraction coefficient of seawater (<inline-formula>
<mml:math display="inline" id="im280">
<mml:mrow>
<mml:mover accent="true">
<mml:mi>&#x3b2;</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:mn>7.44</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>4</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb1;</mml:mo>
<mml:mn>1.08</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>6</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb0;</mml:mo>
<mml:msup>
<mml:mtext>C</mml:mtext>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>), and <inline-formula>
<mml:math display="inline" id="im47">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is a density reference value (1026 kg m<sup>-3</sup>). The first term corresponds to the thermal surface buoyancy flux (<inline-formula>
<mml:math display="inline" id="im48">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>T</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), and the second term is related to the contribution of the haline surface buoyancy flux (<inline-formula>
<mml:math display="inline" id="im49">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>S</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), as suggested by <xref ref-type="bibr" rid="B22">Dorrestein, 1979</xref>, where <italic>So</italic> is surface salinity and (<italic>E</italic> - <italic>P</italic>) is the difference between the evaporation and precipitation rates. Surface wind stress (<inline-formula>
<mml:math display="inline" id="im50">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">&#x3c4;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) was computed as <inline-formula>
<mml:math display="inline" id="im51">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">&#x3c4;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>a</mml:mi>
</mml:msub>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
<mml:mtext>&#xa0;</mml:mtext>
<mml:msubsup>
<mml:mi mathvariant="bold-italic">u</mml:mi>
<mml:mi>r</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, where <inline-formula>
<mml:math display="inline" id="im52">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>a</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the reference density of the air 10 m above the sea surface, and <inline-formula>
<mml:math display="inline" id="im53">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">u</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the wind speed. The drag coefficient (<inline-formula>
<mml:math display="inline" id="im54">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) was derived from the equation of <xref ref-type="bibr" rid="B51">Large and Pond, 1981</xref> with <inline-formula>
<mml:math display="inline" id="im55">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mn>1.14</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> for <inline-formula>
<mml:math display="inline" id="im56">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">u</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
<mml:mo>&lt;</mml:mo>
<mml:mn>10</mml:mn>
<mml:mtext>&#x2009;</mml:mtext>
<mml:msup>
<mml:mrow>
<mml:mtext>m&#xa0;s</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im57">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mi>d</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mn>0.49</mml:mn>
<mml:mo>+</mml:mo>
<mml:mn>0.065</mml:mn>
<mml:msub>
<mml:mi mathvariant="bold-italic">u</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> for <inline-formula>
<mml:math display="inline" id="im58">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">u</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mo>&gt;</mml:mo>
<mml:mn>10</mml:mn>
<mml:mtext>&#x2009;</mml:mtext>
<mml:msup>
<mml:mrow>
<mml:mtext>m&#xa0;s</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>. Note that only the meteorological-related quantities averaged over a window of 2 h were used for calculations in this study (denoted by superscript <italic>s</italic> in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>). The window size of 2 h was chosen to include the hour before and the hour after the release of the CTD and reflects the time usually required to complete a CTD cast.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Half-hourly averaged meteorological data. <bold>(A)</bold> The net surface heat flux (<inline-formula>
<mml:math display="inline" id="im59">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, W m<sup>-2</sup>, defined positive upward) and the related components of the shortwave radiation flux (<inline-formula>
<mml:math display="inline" id="im60">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), net longwave heat flux (<inline-formula>
<mml:math display="inline" id="im61">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), latent heat flux (<inline-formula>
<mml:math display="inline" id="im62">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>a</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), and sensible heat flux (<inline-formula>
<mml:math display="inline" id="im63">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>). <bold>(B)</bold> The net surface buoyancy flux (<inline-formula>
<mml:math display="inline" id="im64">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, W kg<sup>-1</sup>), defined as the sum of the thermal surface buoyancy flux (<inline-formula>
<mml:math display="inline" id="im65">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>T</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>) and haline surface buoyancy flux (<inline-formula>
<mml:math display="inline" id="im66">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>S</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>). <bold>(C)</bold> Sea water temperature (<italic>T<sub>sw</sub>
</italic>) and air temperature (<italic>T<sub>air</sub>
</italic>, &#xb0;C). <bold>(D)</bold> Wind stress (<italic>&#x3c4;</italic>
<sub>o</sub>, N m<sup>-2</sup>). <bold>(E)</bold> Monin-Obukhov length scale (<italic>L<sub>mo</sub>
</italic>, m) and mixed layer depth (<italic>h<sub>&#x3c1;</sub>
</italic>, m). Symbols superimposed on the time series denoted with a superscript <italic>s</italic> represent the exact values of each meteorological quantity obtained with the CTD casts from each hydrographic station. The thin vertical dashed lines at the top of the figure indicate the hydrographic stations. The thick dashed lines at the bottom of the figure indicate the end of each day.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g004.tif"/>
</fig>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>Entrainment parameterization of the 1D TKE budget</title>
<p>Entrainment rates can be parameterized by solving the turbulent closure scheme of the 1D TKE budget (<xref ref-type="bibr" rid="B58">Niiler and Kraus, 1977</xref>). Therefore, depending on the sources and sinks that balance the TKE budget of the mixed layer, an assessment of the entrainment parameterization can also help to elucidate which sources of energy drive mixing in the upper boundary layer.</p>
<p>The 1D TKE budget primarily depends on two sinks (i.e., the dissipation term and buoyancy fluxes during daytime) and three sources, namely (<italic>i</italic>) the production of TKE from mechanical stirring induced by wind stress whose velocity scale is the friction velocity <inline-formula>
<mml:math display="inline" id="im67">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">u</mml:mi>
<mml:mo>*</mml:mo>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msub>
<mml:mi mathvariant="bold-italic">&#x3c4;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo stretchy="false">/</mml:mo>
<mml:msub>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo stretchy="false">/</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>; (<italic>ii</italic>) the generation of TKE by buoyancy forces during free-convection in which the velocity scale is the free-convection velocity <inline-formula>
<mml:math display="inline" id="im68">
<mml:mrow>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mo>*</mml:mo>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo stretchy="false">/</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="bibr" rid="B14">Deardorff, 1970</xref>); and (<italic>iii</italic>) TKE produced by shear, which is parameterized <italic>via</italic> the square of the vertical shear <inline-formula>
<mml:math display="inline" id="im69">
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:msup>
<mml:mi>h</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>=</mml:mo>
<mml:mo stretchy="false">[</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>u</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>+</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>v</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
<mml:msup>
<mml:mo stretchy="false">)</mml:mo>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> at the base of the mixed layer. In this study, this is represented by the Dynamic Instability Term, <inline-formula>
<mml:math display="inline" id="im70">
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
<mml:mo>=</mml:mo>
<mml:mn>0.5</mml:mn>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:msup>
<mml:mi>u</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>+</mml:mo>
<mml:mi>&#x3b4;</mml:mi>
<mml:msup>
<mml:mi>v</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>, where <inline-formula>
<mml:math display="inline" id="im71">
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>u</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im72">
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>v</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> represent velocity jumps at the base of the mixed layer calculated as the difference in velocity just below and above the mixed layer depth. All variables and parameters used in this study are summarized in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. It should be noted that other entrainment sources can be included, such as internal waves breaking at the interface (<xref ref-type="bibr" rid="B73">Strang and Fernando, 2001</xref>) or Langmuir vortices within the mixed layer (<xref ref-type="bibr" rid="B29">Fl&#xf3;r et&#xa0;al., 2010</xref>), although further research is required to elucidate the roles of additional sources in entrainment phenomena.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>List of symbols and parameters that are relevant to the entrainment parameterization.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Symbol</th>
<th valign="top" align="center">Unit</th>
<th valign="top" align="left">Definition</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">group-F</td>
<td valign="top" align="left"/>
<td valign="top" align="left">stations within filament waters (26&#x2013;32, 38&#x2013;46)</td>
</tr>
<tr>
<td valign="top" align="left">group-nF</td>
<td valign="top" align="left"/>
<td valign="top" align="left">stations outside filament waters (24, 34&#x2013;36, 48&#x2013;50)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>h<sub>&#x3c1;</sub>
</italic>
</td>
<td valign="top" align="center">m</td>
<td valign="top" align="left">mixed layer depth</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>h<sub>&#x3b5;</sub>
</italic>
</td>
<td valign="top" align="center">m</td>
<td valign="top" align="left">mixing layer depth</td>
</tr>
<tr>
<td valign="top" align="left">&#x394;<italic>h</italic>
</td>
<td valign="top" align="center">m</td>
<td valign="top" align="left">entrainment zone &#x394;<italic>h</italic> = <italic>h<sub>&#x3b5;</sub>
</italic> - <italic>h<sub>&#x3c1;</sub>
</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>&#x3b5;<sub>o</sub>
</italic>
</td>
<td valign="top" align="center">m<sup>2</sup> s<sup>-3</sup>
</td>
<td valign="top" align="left">observed TKE dissipation rate</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>&#x3b5;<sub>p</sub>
</italic>
</td>
<td valign="top" align="center">m<sup>2</sup> s<sup>-3</sup>
</td>
<td valign="top" align="left">parameterized TKE dissipation rate following <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>&#x3b5;</italic>
<sub>G89</sub>
</td>
<td valign="top" align="center">m<sup>2</sup> s<sup>-3</sup>
</td>
<td valign="top" align="left">scaled TKE dissipation rate following <xref ref-type="bibr" rid="B35">Gregg (1989)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>L<sub>o</sub>
</italic>
</td>
<td valign="top" align="center">m</td>
<td valign="top" align="left">Ozmidov length scale</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>u<sub>*</sub>
</italic>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">friction velocity</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>w<sub>*</sub>
</italic>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">free-convection velocity</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>b</italic>
</td>
<td valign="top" align="center">m s<sup>-2</sup>
</td>
<td valign="top" align="left">buoyancy <inline-formula>
<mml:math display="inline" id="im73">
<mml:mrow>
<mml:mi>b</mml:mi>
<mml:mo>=</mml:mo>
<mml:mi>g</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3c1;</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msubsup>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>o</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>DIT</italic>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">Dynamic instability Term, <italic>DIT</italic> = 0.5<italic>w<sub>e</sub>
</italic> (<italic>&#x3b4;u</italic>
<sup>2</sup> + <italic>&#x3b4;v</italic>
<sup>2</sup>)</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im74">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">TKE bulk-based entrainment rate from <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im75">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im76">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:mtext>DIT&#xa0;term</mml:mtext>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im77">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">new approach for a TKE bulk-based entrainment rate</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im78">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">m s<sup>-1</sup>
</td>
<td valign="top" align="left">replaces <italic>&#x3b5;<sub>o</sub>
</italic> by <italic>&#x3b5;<sub>G</sub>
</italic>
<sub>89</sub> in <inline-formula>
<mml:math display="inline" id="im79">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>N<sup>2</sup>
</italic>
</td>
<td valign="top" align="center">s<sup>-2</sup>
</td>
<td valign="top" align="left">buoyancy frequency squared</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Sh<sup>2</sup>
</italic>
</td>
<td valign="top" align="center">s<sup>-2</sup>
</td>
<td valign="top" align="left">vertical shear squared</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>&#x3c4;<sub>o</sub>
</italic>
</td>
<td valign="top" align="center">N m<sup>-2</sup>
</td>
<td valign="top" align="left">wind stress</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>L<sub>mo</sub>
</italic>
</td>
<td valign="top" align="center">m</td>
<td valign="top" align="left">Monin-Obukhov length scale</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im80">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W m<sup>-2</sup>
</td>
<td valign="top" align="left">surface net heat flux (downward negative)</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im81">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W m<sup>-2</sup>
</td>
<td valign="top" align="left">surface long-wave heat flux</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im82">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W m<sup>-2</sup>
</td>
<td valign="top" align="left">surface short-wave heat flux</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im83">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W m<sup>-2</sup>
</td>
<td valign="top" align="left">surface sensible heat flux</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im84">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>a</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W m<sup>-2</sup>
</td>
<td valign="top" align="left">surface latent heat flux</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im85">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W kg<sup>-1</sup>
</td>
<td valign="top" align="left">surface net buoyancy flux (downward negative)</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im86">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>T</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W kg<sup>-1</sup>
</td>
<td valign="top" align="left">surface thermal buoyancy flux</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im87">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>S</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">W kg<sup>-1</sup>
</td>
<td valign="top" align="left">surface haline buoyancy flux</td>
</tr>
<tr>
<td valign="top" align="left">
<inline-formula>
<mml:math display="inline" id="im88">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">m<sup>3</sup> s<sup>-3</sup>
</td>
<td valign="top" align="left">turbulent diapycnal buoyancy flux integrated over &#x394;<italic>h</italic>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>T<sub>res</sub>
</italic>
</td>
<td valign="top" align="center">minutes</td>
<td valign="top" align="left">Turbulent residence time</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>T<sub>air</sub>
</italic>
</td>
<td valign="top" align="center">&#xb0;C</td>
<td valign="top" align="left">air temperature at 10 m height</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>T<sub>sw</sub>
</italic>
</td>
<td valign="top" align="center">&#xb0;C</td>
<td valign="top" align="left">sea water temperature</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Several equations have been proposed to compute the entrainment rate as the effective vertical velocity that transports buoyancy across the base of the mixed layer. This study focuses on the parameterization of <inline-formula>
<mml:math display="inline" id="im89">
<mml:mrow>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> following the widely used mixed layer bulk model of <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref> (<inline-formula>
<mml:math display="inline" id="im90">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, hereinafter), in which the evolution of the mixed layer can be computed as follows:</p>
<disp-formula>
<label>(4)</label>
<mml:math display="block" id="M4">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>m</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>m</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msubsup>
<mml:mi>u</mml:mi>
<mml:mo>*</mml:mo>
<mml:mn>3</mml:mn>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:mn>0.5</mml:mn>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
<mml:mo>&#x2212;</mml:mo>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mn>0.5</mml:mn>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>b</mml:mi>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>m</italic>
<sub>1 =</sub> 2.6 and <italic>m</italic>
<sub>2 =</sub> 1.9 are empirical constants, <inline-formula>
<mml:math display="inline" id="im91">
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>b</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> is the buoyancy jump at the base of the mixed layer calculated as the difference in buoyancy just below and above the mixed layer depth, and <inline-formula>
<mml:math display="inline" id="im92">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the parameterized TKE dissipation rate. This equation is similar to that of <xref ref-type="bibr" rid="B58">Niiler and Kraus (1977)</xref>. The main difference between these expressions lies in how <inline-formula>
<mml:math display="inline" id="im93">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is parameterized. Equation (4) does not consider the effect of vertical shear at the base of the mixed layer as a relevant source of TKE. To take into consideration shear-driven turbulence (hereinafter <inline-formula>
<mml:math display="inline" id="im94">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), we also employed the equation used in the modeling study of <xref ref-type="bibr" rid="B67">Samson et&#xa0;al. (2009)</xref>:</p>
<disp-formula>
<label>(5)</label>
<mml:math display="block" id="M5">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>m</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>m</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msubsup>
<mml:mi>u</mml:mi>
<mml:mo>*</mml:mo>
<mml:mn>3</mml:mn>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:mn>0.5</mml:mn>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
<mml:mo>&#x2212;</mml:mo>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>p</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mn>0.5</mml:mn>
<mml:mrow>
<mml:mo stretchy="false">[</mml:mo>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>b</mml:mi>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:msup>
<mml:mi>u</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>+</mml:mo>
<mml:mi>&#x3b4;</mml:mi>
<mml:msup>
<mml:mi>v</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>These authors included the DIT term to evaluate the response of the oceanic mixed layer during a hurricane. In this study, the effect of the DIT term was analyzed under normal wind conditions. In this case, vertical shear will be generated by other sources such as the baroclinicity of the filament front and/or breaking internal waves.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results and discussion</title>
<sec id="s3_1">
<label>3.1</label>
<title>Hydrographic background of the filament</title>
<p>Upwelling areas are highly dynamic systems (e.g., <xref ref-type="bibr" rid="B5">Barton et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B37">Hagen, 2001</xref>; <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>), and studying turbulent processes within these systems is understandably challenging. Unlike in laboratory or modeling experiments, the interactions between processes that operate on different spatiotemporal scales within upwelling systems makes isolating and analyzing a single process quite difficult. In order to describe the physical processes involved in the dynamics of an area, such as within frontal systems, mesoscale eddies, and submesoscale structures, a hydrographical description of the area is required.</p>
<p>The SST and Chl satellite images in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref> show the extension and location of the Cape Ghir upwelling filament over a two-day period (20&#x2013;21 October 2010). The meander-like structure is identifiable as a cool feature with a high Chl concentration that crosses the sampling stations in transects A and B (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The filament waters exhibited a difference of ~2&#xb0;C from the surrounding waters and were highly conditioned by the mesoscale dynamics of the area, as observed in the superimposed geostrophic currents from the AVISO product in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>. Although representative images with low cloud coverage were chosen as examples, additional images indicated that the filament was present during the sampling period. The filament signal intensified after the last CTD station (i.e., station 50) when stronger wind speeds were recorded. The general description of this filament agrees with those of previous observational studies of African upwelling filaments (e.g., <xref ref-type="bibr" rid="B6">Barton et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B37">Hagen, 2001</xref>), especially that of <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al. (2005b)</xref> for the same filament and season in 1995 and 1997.</p>
<p>The vertical sections of salinity (<italic>S</italic>) and the potential density anomaly (<inline-formula>
<mml:math display="inline" id="im95">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>&#x3b8;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) in <xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5</bold>
</xref> show doming of isohalines and isopycnals in the northeastern stations of transect A (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A, B</bold>
</xref>). In addition, the combined vertical CTD-XBT sections also show an elevation of isotherms at the same locations (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>). This dome-like structure seems to be well correlated with stations that cross the filament front according to satellite imagery (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>).</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Vertical hydrographic sections derived from CTD profiles of <bold>(A)</bold> absolute salinity (<italic>S</italic>) and <bold>(B)</bold> potential density anomaly (<italic>&#x3c3;<sub>&#x3b8;</sub>
</italic>, m kg<sup>-3</sup>) for transect A and <bold>(C)</bold> <italic>S</italic> and <bold>(D)</bold> <italic>&#x3c3;<sub>&#x3b8;</sub>
</italic> for transect B. Contours of <italic>S</italic> are plotted at 0.5 intervals, while <italic>&#x3c3;<sub>&#x3b8;</sub>
</italic> contours are plotted every 0.1 kg m<sup>-3</sup>. The cumulative distance between stations in km is shown at the bottom of each panel. The hydrographic station numbers are shown at the top of each panel. Inverted triangles indicate stations influenced by the upwelling filament.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g005.tif"/>
</fig>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>Vertical sections derived from CTD-temperature profiles combined with expendable bathythermograph (XBT) temperature profiles of transects <bold>(A)</bold> A, <bold>(B)</bold> B, and <bold>(C)</bold> C, which was an additional transect. Isotherms are spaced every 0.5&#xb0;C, and an offset of approximately 10 m was applied to the XBT profiles to ensure consistency with CTD depth. At the top of each panel, numbers in bold italic font denote CTD stations, whereas numbers in Roman font denote XBT stations. Note that not all station numbers are displayed at the top to facilitate viewing. All CTD and XBT stations are taken into account in the vertical sections. The cumulative distance (km) is shown at the bottom of each panel.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g006.tif"/>
</fig>
<p>Although it was not the aim of this study, it was interesting that the temperature-salinity (<inline-formula>
<mml:math display="inline" id="im96">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>&#x3b8;</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>S</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>) relationship (not shown) indicated the presence of a subsurface salinity maximum below the mixed layer (~50 m), with mean values of <italic>S</italic> = 36.55, <italic>T<sub>&#x3b8;</sub>
</italic> = 19&#xb0;C, and <italic>&#x3c3;<sub>&#x3b8;</sub>
</italic> = [26-26.5] kg m<sup>-3</sup> in stations 38 and 40 of transect B (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5C, D</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6B</bold>
</xref>). This subsurface salinity maximum agrees with the one found by <xref ref-type="bibr" rid="B63">Pelegri et al. (2005b)</xref>. In their study, these authors suggested that the presence of this subsurface maximum may indicate an interconnected horizontal recirculation cell in the Cape Ghir region. A <inline-formula>
<mml:math display="inline" id="im97">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>&#x3b8;</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>S</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> diagram with the same data set used in this study can be found in <xref ref-type="bibr" rid="B3">Arcos-Pulido et&#xa0;al. (2014)</xref>, which shows the subsurface salinity maximum (their <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>).</p>
<p>An abrupt upwelling of isohalines and isopycnals (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5C, D</bold>
</xref>) and isotherms (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6B</bold>
</xref>) from station 44 to 48 was apparent in transect B, which was located mostly onshore. The combined CTD-XBT vertical section allowed for the creation of an additional transect, C (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6C</bold>
</xref>), in which isotherm outcropping was smoother than that of transect B. This may have been due to the proximity of transect B to the filament.</p>
<p>In general, it appeared that the rising of isotherms and isopycnals was concentrated in the first 200 m of the water column, particularly in the stations located within the upwelling filament. This finding agrees with what was reported by <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al. (2005b)</xref>, who suggested that this filament originates at shallow depths within the water column. On the other hand, the area of interest was strongly influenced by strong mesoscale dynamics. In order to effectively show these structures, geostrophic velocities derived from AVISO altimeter products were superimposed on the satellite images (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). The current velocity revealed a cyclonic mesoscale structure, which seemed to induce northward along-front flow in transect A. A poleward geostrophic current crossed transect B in opposite direction to the filament flow as the result of an anticyclonic structure. The geostrophic currents revealed a cyclonic mesoscale structure, which seemed to induce southward along-front flow in transect A and northward along-front flow due to the interaction between a mesoscale cyclone and an anticyclone that crossed transect B.</p>
<p>Based on SST and Chl satellite imagery and its agreement with isopycnal shoaling, we concluded that the hydrographic stations could be separated into two groups: group-F, which was influenced by the upwelling filament and included stations 26&#x2013;32 and 38&#x2013;46, and group-nF, which included the remaining stations (24, 34&#x2013;36, and 48&#x2013;50). In a related study, <xref ref-type="bibr" rid="B3">Arcos-Pulido et&#xa0;al. (2014)</xref> indicated that group-F experienced enhanced nutrient concentrations below the mixed layer.</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Meteorological conditions</title>
<p>Surface fluxes exhibited a regular diurnal cycle in which both <inline-formula>
<mml:math display="inline" id="im98">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im99">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> were positive when upward fluxes occurred during the night (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A, B</bold>
</xref>). The <inline-formula>
<mml:math display="inline" id="im100">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> values varied between -3 W m<sup>-2</sup> and -731 W m<sup>-2</sup> during daytime and between 2 W m<sup>-2</sup> to 309 W m<sup>-2</sup> at night (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), which resulted in convective conditions with mean values of 1.18 <inline-formula>
<mml:math display="inline" id="im101">
<mml:mo>&#xd7;</mml:mo>
</mml:math>
</inline-formula> 10<sup>-8</sup> W kg<sup>-1</sup> during the night (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). In this regard, fluxes of <inline-formula>
<mml:math display="inline" id="im102">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>S</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> were always lower than those of <inline-formula>
<mml:math display="inline" id="im103">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>T</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and differed by one order of magnitude. The main contributors to the net total heat flux during the night were <inline-formula>
<mml:math display="inline" id="im104">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>a</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im105">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>q</mml:mi>
<mml:mrow>
<mml:mi>L</mml:mi>
<mml:mi>w</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>).</p>
<p>The air temperature was generally higher than the sea water temperature except in CTD stations 30&#x2013;32 and 42&#x2013;44, which had comparable <inline-formula>
<mml:math display="inline" id="im106">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>r</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and SST values (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). This decrease in seawater temperature may be related to these stations being located within cool upwelling filament waters. It is noteworthy that the mean difference in temperature between waters within and outside of the filament was 1.09&#xb0;C.</p>
<p>Weak northeasterly winds prevailed throughout the cruise (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>), with a mean speed of <italic>
<bold>u</bold>
<sub>r</sub>
</italic> = 3.78 m s<sup>-1</sup> and <inline-formula>
<mml:math display="inline" id="im107">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">&#x3c4;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> values that varied from 0.0026 N m<sup>-2</sup> to 0.065 N m<sup>-2</sup> on the last day of sampling. This wind pattern was characteristic of early fall when trade winds are relatively less intense in this region. A sudden increase in wind speed was observed on 24 October (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>), which interfered with observations. Thus, the measurements concluded on 23 October.</p>
<p>Given that both wind-stress and net surface heat fluxes can act as forcing mechanisms to enhance mixing at the base of the mixed layer and increase <inline-formula>
<mml:math display="inline" id="im108">
<mml:mrow>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, a meteorological-related quantity, such as the Monin&#x2013;Obukhov length scale (<inline-formula>
<mml:math display="inline" id="im109">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>m</mml:mi>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>), is useful for determining which forcing process dominates the dynamics of the upper ocean layer. To indicate the depth at which both mechanical and convection forces are comparable, this scale can take the following form:</p>
<disp-formula>
<label>(6)</label>
<mml:math display="block" id="M6">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>m</mml:mi>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msup>
<mml:mi>u</mml:mi>
<mml:mrow>
<mml:mo>*</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3ba;</mml:mi>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>&#x3ba;</italic> = 0.4 is the von K&#xe1;rm&#xe1;n constant (e.g., <xref ref-type="bibr" rid="B43">Huffman and Radshaw, 1972</xref>). Values of <italic>L<sub>mo</sub>
</italic> &gt; 0 (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>) indicate that the turbulence generated by wind stirring is suppressed by the stable stratification present during daytime, while <italic>L<sub>mo</sub>
</italic>&lt; 0 occurs under unstable conditions at night. Moreover, in our study, |<italic>L<sub>mo</sub>
</italic>| was generally shallower than <inline-formula>
<mml:math display="inline" id="im110">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>), which suggests that wind-induced mixing does not notably control the depth of the mixed layer.</p>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Mixed layer depth, mixing layer depth, and entrainment zone</title>
<p>Bulk mixed layer models and consequently entrainment rates heavily depend on the depth of the mixed layer. This dependence has been attributed to velocity and buoyancy values across the mixed layer layer (<xref ref-type="bibr" rid="B66">Ravindran et&#xa0;al., 1999</xref>), which vary greatly with <inline-formula>
<mml:math display="inline" id="im111">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. Therefore, we carefully determined <inline-formula>
<mml:math display="inline" id="im112">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> by comparing different methods (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>).</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>Vertical section of the buoyancy frequency squared (<italic>N</italic>
<sup>2</sup>, rad<sup>2</sup> s<sup>-2</sup>) in logarithmic scale for all hydrographic stations of <bold>(A)</bold> transect A and <bold>(B)</bold> transect <bold>(B)</bold> Superimposed lines indicate mixed layer depths (<italic>h<sub>&#x3c1;</sub>
</italic>, m) computed with different methods. For the sake of clarity, only potential density-based algorithms are shown. Squares show <italic>h<sub>&#x3c1;</sub>
</italic> obtained with the methods of <xref ref-type="bibr" rid="B48">Kara et&#xa0;al. (2000)</xref>. Red circles show <italic>h<sub>&#x3c1;</sub>
</italic> obtained with the <xref ref-type="bibr" rid="B42">Holte and Talley (2009)</xref> algorithm (except for station 50 where a <italic>T<sub>&#x3b8;</sub>
</italic>-based algorithm was more appropriate). Black squares show the <italic>&#x3c3;<sub>&#x3b8;</sub>
</italic> threshold criteria of <xref ref-type="bibr" rid="B16">de Boyer Mont&#xe9;gut et&#xa0;al. (2004)</xref>. Yellow squares show <italic>h<sub>&#x3c1;</sub>
</italic> computed following the gradient method of <xref ref-type="bibr" rid="B21">Dong et&#xa0;al. (2008)</xref>. The light gray contours are isopycnals (<italic>&#x3c3;<sub>&#x3b8;</sub>
</italic>, m kg<sup>-3</sup>). The vertical black arrows denote the hydrographic stations of group-F, which were influenced by filament waters.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g007.tif"/>
</fig>
<p>The algorithm developed by <xref ref-type="bibr" rid="B42">Holte and Talley (2009)</xref> can be based on the shape of either the potential density or potential temperature profile of each hydrographic station. With the exception of station 50, we found that the <inline-formula>
<mml:math display="inline" id="im113">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>&#x3b8;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> method from <xref ref-type="bibr" rid="B42">Holte and Talley (2009)</xref> resulted in an adequate fit to the observed <inline-formula>
<mml:math display="inline" id="im114">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. For station 50, the <inline-formula>
<mml:math display="inline" id="im115">
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>&#x3b8;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> method of <xref ref-type="bibr" rid="B42">Holte and Talley (2009)</xref> was more appropriate, which was largely due to the existence of salinity barriers around the area caused by the subsurface salinity maximum (<xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>). This algorithm agrees rather well with the depth of the maximum gradient of the buoyancy frequency squared (<italic>N</italic>
<sup>2</sup>, rad<sup>2</sup>s<sup>-2</sup>) (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>) and with the threshold method of &#x394;<italic>&#x3c3;<sub>&#x3b8;</sub>
</italic> = 0.03 kg m<sup>-3</sup> (<xref ref-type="bibr" rid="B16">de Boyer Mont&#xe9;gut et&#xa0;al., 2004</xref>).</p>
<p>Further, we found that the algorithm given by <xref ref-type="bibr" rid="B48">Kara et&#xa0;al. (2000)</xref> tended to overestimate <inline-formula>
<mml:math display="inline" id="im116">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, whereas the gradient methods of <xref ref-type="bibr" rid="B21">Dong et&#xa0;al. (2008)</xref> tended to underestimate <inline-formula>
<mml:math display="inline" id="im117">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. These results agree with the findings of <xref ref-type="bibr" rid="B42">Holte and Talley (2009)</xref> for large databases of hydrographic profiles.</p>
<p>Several authors have emphasized the need to consider a boundary region of elevated and active mixing in the pycnocline at the base of the mixed layer (e.g., <xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>; <xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>; <xref ref-type="bibr" rid="B57">Nagai et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B75">Sutherland et&#xa0;al., 2014</xref>), which is usually referred to as the mixing layer depth (<inline-formula>
<mml:math display="inline" id="im118">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>). The difference between <inline-formula>
<mml:math display="inline" id="im119">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im120">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is that the latter is the depth at which turbulent processes are active and maintain the homogeneity of the mixed layer and entrain buoyancy across the pycnocline. In contrast, <inline-formula>
<mml:math display="inline" id="im121">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> represents the depth at which these surface fluxes have been mixed in the recent past (i.e., in a daily cycle or longer), thus <inline-formula>
<mml:math display="inline" id="im122">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> represents the history of several mixing events. Depending on the time scale and spatial resolution, the use of <inline-formula>
<mml:math display="inline" id="im123">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> could be more appropriate when evaluating entrainment than <inline-formula>
<mml:math display="inline" id="im124">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>). For example, fine-scale processes forced by transient mixing events in which flux conditions can change at any given moment of the day require measurements of the active mixing layer. As such, the definition of <inline-formula>
<mml:math display="inline" id="im125">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> has important repercussions for Sverdrup&#x2019;s critical depth theory of phytoplankton blooms (<xref ref-type="bibr" rid="B76">Sverdrup, 1953</xref>). <xref ref-type="bibr" rid="B30">Franks (2014)</xref> revisited Sverdrup&#x2019;s critical depth theory and argued that <inline-formula>
<mml:math display="inline" id="im126">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, defined by density gradients, may not always reflect the intensity of active turbulence or its vertical extension. In this sense, the critical turbulence hypothesis (<xref ref-type="bibr" rid="B44">Huisman and Weissing, 1999</xref>) suggests that active mixing described by the definition of <inline-formula>
<mml:math display="inline" id="im127">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> must be considered, as it can act to reduce stratification in the upper layer, which may lead to favorable conditions that allow phytoplankton blooms to develop (e.g., <xref ref-type="bibr" rid="B27">Ferrari et&#xa0;al., 2015</xref>).</p>
<p>In general, <inline-formula>
<mml:math display="inline" id="im128">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> can be directly obtained with the <inline-formula>
<mml:math display="inline" id="im129">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> of microstructure data (<xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>; <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B30">Franks, 2014</xref>; <xref ref-type="bibr" rid="B75">Sutherland et&#xa0;al., 2014</xref>), microstructure temperature gradients (<xref ref-type="bibr" rid="B57">Nagai et&#xa0;al., 2005</xref>), or measurements of the largest turbulent overturning length scales such as Thorpe scales (<xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>). In this study, we determined the base of the mixing layer when the dissipation rate decreased by two orders of magnitude from the surface, which was similarly undertaken by <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al. (2010)</xref>. However, not all <inline-formula>
<mml:math display="inline" id="im130">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> profiles exhibited clear transitions. Therefore, a turbulent length scale, such as the Ozmidov scale <inline-formula>
<mml:math display="inline" id="im131">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="bibr" rid="B61">Ozmidov, 1965</xref>), could help clarify the extension of the active mixing or <inline-formula>
<mml:math display="inline" id="im132">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, where <inline-formula>
<mml:math display="inline" id="im133">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> takes the following form:</p>
<disp-formula>
<label>(7)</label>
<mml:math display="block" id="M7">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:msqrt>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo stretchy="false">/</mml:mo>
<mml:msup>
<mml:mi>N</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
</mml:mrow>
</mml:msqrt>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>In such a case, <inline-formula>
<mml:math display="inline" id="im134">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is interpreted as the size of the largest turbulent eddy in a region of stable stratification. An example of <inline-formula>
<mml:math display="inline" id="im135">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im136">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> can be viewed in <xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>, in which the maximum vertical gradient of <inline-formula>
<mml:math display="inline" id="im137">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> agrees with a decrease in <inline-formula>
<mml:math display="inline" id="im138">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> of one order of magnitude within the upper boundary layer.</p>
<fig id="f8" position="float">
<label>Figure&#xa0;8</label>
<caption>
<p>Vertical profiles of hydrographic and turbulent quantities. Left panels show potential temperature (<italic>T<sub>&#x3b8;</sub>
</italic> &#xb0;C, dark gray line), the potential density anomaly (<italic>&#x3c3;<sub>&#x3b8;</sub>
</italic> kg m<sup>-3</sup>, dash-dot line), and absolute salinity (<italic>S</italic>, dashed black line) superimposed on turbulent kinetic energy (TKE) dissipation profiles (<italic>&#x3b5;<sub>o</sub>
</italic> m<sup>2</sup> s<sup>-3</sup>, black bars) for <bold>(A)</bold> station 42 of group-F (within the upwelling filament) and <bold>(C)</bold> station 48 of group-nF (outside the upwelling filament). Both stations were measured during stable daytime conditions. The right panels show Ozmidov scales (<italic>L<sub>o</sub>
</italic>, m, black bars) and vertical profiles of the buoyancy frequency cubed (<italic>N<sup>3</sup>
</italic> s<sup>-3</sup>, gray profiles) for <bold>(B)</bold> station 42 and <bold>(D)</bold> station 48. Horizontal dashed and thick lines denote the mixed layer depth (<italic>h<sub>&#x3c1;</sub>
</italic>, m) and mixing layer depth (<italic>h<sub>&#x3b5;</sub>
</italic>, m), respectively.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g008.tif"/>
</fig>
<p>
<xref ref-type="bibr" rid="B17">Dewey and Moum (1990)</xref>, in their examination of microstructure data in upwelling filaments off northern California, noted that entrainment can only take place when <inline-formula>
<mml:math display="inline" id="im139">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> exceeds <inline-formula>
<mml:math display="inline" id="im140">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>; otherwise, when mixing is not strong enough to overcome the effects of stratification in the pycnocline, entrainment cannot occur. <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al. (2010)</xref> also distinguished between <inline-formula>
<mml:math display="inline" id="im141">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im142">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> to measure entrainment heat fluxes based on dissipation profiles across the Gulf Stream provided that <inline-formula>
<mml:math display="inline" id="im143">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> was deeper than <inline-formula>
<mml:math display="inline" id="im144">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> . The same approach was considered in this study by defining the entrainment zone or interface as <inline-formula>
<mml:math display="inline" id="im145">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>.</p>
</sec>
<sec id="s3_4">
<label>3.4</label>
<title>Turbulence enhancement within upwelling filaments</title>
<p>When the active mixing layer extends deeper than the mixed layer, that is <inline-formula>
<mml:math display="inline" id="im146">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
<mml:mo>&gt;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>; <xref ref-type="bibr" rid="B8">Brainerd and Gregg, 1995</xref>; <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al., 2010</xref>), non-turbulent fluid from the pycnocline is subject to sufficient mixing to break stratification at the pycnocline and enters the turbulent fluid.</p>
<p>Some authors have speculated that enhanced turbulence below <inline-formula>
<mml:math display="inline" id="im147">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> could be related to shear instabilities produced by internal waves as a result of impinging convective plumes from beneath the mixed layer (<xref ref-type="bibr" rid="B55">Moum et&#xa0;al., 1989</xref>). <xref ref-type="bibr" rid="B54">MacKinnon and Gregg (2005)</xref> found higher correlations between <inline-formula>
<mml:math display="inline" id="im148">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and internal wave energy than between <inline-formula>
<mml:math display="inline" id="im149">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im150">
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">&#x3c4;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> below the mixed layer. Here, an example of this can be seen in <xref ref-type="fig" rid="f8">
<bold>Figure&#xa0;8</bold>
</xref>, in which <inline-formula>
<mml:math display="inline" id="im151">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is deeper than <inline-formula>
<mml:math display="inline" id="im152">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> for a station in group-F (<xref ref-type="fig" rid="f8">
<bold>Figures&#xa0;8A, B</bold>
</xref>). In contrast, <inline-formula>
<mml:math display="inline" id="im153">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im154">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> exhibited the same depth in a station of group-nF (<xref ref-type="fig" rid="f8">
<bold>Figures&#xa0;8C, D</bold>
</xref>). Both stations were measured during daytime conditions (i.e., during the restratification of the mixed layer when convection forcing is absent).</p>
<p>A complete view of active turbulent mixing is given in <xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>, which shows vertical profiles of <inline-formula>
<mml:math display="inline" id="im155">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and superimposed profiles of <inline-formula>
<mml:math display="inline" id="im156">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> scales computed for each microstructure station with their respective <inline-formula>
<mml:math display="inline" id="im157">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im158">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. Interestingly, <inline-formula>
<mml:math display="inline" id="im159">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> was deeper than <inline-formula>
<mml:math display="inline" id="im160">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (i.e., <inline-formula>
<mml:math display="inline" id="im161">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>) in filament stations (thick profiles in <xref ref-type="fig" rid="f9">
<bold>Figures&#xa0;9</bold>
</xref>, <xref ref-type="fig" rid="f10">
<bold>10A, B</bold>
</xref>). This suggests that only filament stations are susceptible to diapycnal entrainment by surface-forced processes (<xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>; <xref ref-type="bibr" rid="B25">Fer and Sundfjord, 2007</xref>; <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al., 2010</xref>). This may be the result of elevated <inline-formula>
<mml:math display="inline" id="im168">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> at group-F stations and the shallow mixed layers produced by isopycnal outcropping due to the isopycnal morphology of the frontal filament system.</p>
<fig id="f9" position="float">
<label>Figure&#xa0;9</label>
<caption>
<p>Vertical profiles of Ozmidov scales (<italic>L<sub>o</sub>
</italic>, m) for each microstructure station. The color columns are profiles of the observed TKE dissipation rates (<italic>&#x3b5;<sub>o</sub>
</italic>, m<sup>2</sup> s<sup>-3</sup>). The maximum <italic>L<sub>o</sub>
</italic> value corresponds to 5.18 m for station 34 at 42 m depth. The minimum <italic>L<sub>o</sub>
</italic> of 0.0045 m corresponds to station 38 at 66 m depth. The thick black profiles show <italic>L<sub>o</sub>
</italic> for stations of group-F. The thin profiles show <italic>L<sub>o</sub>
</italic> for stations of group-nF. The horizontal lines indicate the mixed layer depths (<italic>h<sub>&#x3c1;</sub>
</italic>, yellow) and mixing layer depth (<italic>h<sub>&#x3b5;</sub>
</italic>, blue) in meters. The vertical dashed lines show the limits of the group-F stations.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g009.tif"/>
</fig>
<fig id="f10" position="float">
<label>Figure&#xa0;10</label>
<caption>
<p>
<bold>(A)</bold> Entrainment rates (<italic>w<sub>e</sub>
</italic>, m s<sup>-1</sup>) following the methodology of <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref> (<inline-formula>
<mml:math display="inline" id="im162">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), entrainment rates adding the DIT term (<inline-formula>
<mml:math display="inline" id="im163">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), and entrainment rates using the modifications proposed in this study (<inline-formula>
<mml:math display="inline" id="im164">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>
<bold>)</bold> computed at a vertical resolution of 2 m. <bold>(B)</bold> Entrainment rates, <inline-formula>
<mml:math display="inline" id="im165">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, averaged over 10 m for observable values (<inline-formula>
<mml:math display="inline" id="im166">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mrow>
<mml:mi>e</mml:mi>
<mml:mn>10</mml:mn>
<mml:mi>m</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), and entrainment rates scaled following the methodology of <xref ref-type="bibr" rid="B35">Gregg (1989)</xref> (<inline-formula>
<mml:math display="inline" id="im167">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mrow>
<mml:mi>e</mml:mi>
<mml:mn>10</mml:mn>
<mml:mi>m</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g010.tif"/>
</fig>
<p>It is important to note the enhancement of <inline-formula>
<mml:math display="inline" id="im169">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> below the mixed layer of filament waters, which can be seen in <xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>. A weak wind regime during sampling days, as evidenced by the <inline-formula>
<mml:math display="inline" id="im170">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>m</mml:mi>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> scales (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>), indicates that the turbulence generated within the upwelling filament by wind stress was likely small when compared to turbulent diapycnal buoyancy fluxes or vertical shear at the base of the mixed layer. However, this increase in turbulence has also often been linked with elevated vertical shear levels (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11</bold>
</xref>).</p>
<fig id="f11" position="float">
<label>Figure&#xa0;11</label>
<caption>
<p>
<bold>(A)</bold> Vertical sections of total vertical shear squared (<italic>Sh<sup>2</sup>
</italic>, s<sup>-2</sup>) for transect A rotated to the reference system of geostrophic velocities and <bold>(B)</bold> geostrophic vertical shear squared (<inline-formula>
<mml:math display="inline" id="im171">
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:msubsup>
<mml:mi>h</mml:mi>
<mml:mi>g</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>, s<sup>-2</sup>) with the level of no motion set to 650 m for transect <bold>(A)</bold> The same is shown in <bold>(C, D)</bold> for transect <bold>(B)</bold> Crosses represent the mixed layer depths (<italic>h<sub>&#x3c1;</sub>
</italic>, m) averaged between pairs of stations. Note the logarithmic scale. The isopycnals (kg m<sup>-3</sup>) are also shown. The cumulative distance (km) between stations is shown at the bottom.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g011.tif"/>
</fig>
<p>Vertical current shear was relatively high in areas associated with isopycnal outcropping, such as in group-F stations (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11</bold>
</xref>), thus we examined the nature of these shear values. To ensure consistency when comparing ADCP- <inline-formula>
<mml:math display="inline" id="im172">
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:msup>
<mml:mi>h</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> with geostrophic shear (<inline-formula>
<mml:math display="inline" id="im173">
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:msubsup>
<mml:mi>h</mml:mi>
<mml:mi>g</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>), the ADCP velocities were rotated to the same reference system and interpolated between pairs of stations. Geostrophic shear was computed through the thermal wind relation by setting a reference level of no motion at 650 m (see <xref ref-type="bibr" rid="B63">Pelegr&#xed; et&#xa0;al., 2005b</xref>). In <xref ref-type="fig" rid="f11">
<bold>Figures&#xa0;11A, C</bold>
</xref>, it can be seen that the <inline-formula>
<mml:math display="inline" id="im174">
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:msup>
<mml:mi>h</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> in group-F stations is mainly driven by the resolved component of the geostrophic velocity field in transect A. In transect B, the isopycnals outcropped towards the coast due to the presence of the filament and proximity to the coastal transition zone (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11D</bold>
</xref>). Here, the resolved geostrophic component became less relevant and ageostrophic effects arose to force total vertical shear in the stations of group-F (<xref ref-type="fig" rid="f11">
<bold>Figures&#xa0;11B, D</bold>
</xref>). These results were also supported by the geostrophic currents of altimetry data (see <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). Further, the presence of a southward geostrophic current agreed with the predominance of geostrophic shear in transect A. In contrast, a departure from geostrophy appeared to take place in the coastal transition zone of transect B, in which the filament flowed southward in the opposite direction of geostrophic flow (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11D</bold>
</xref>), which was also observed by <xref ref-type="bibr" rid="B18">Dewey et&#xa0;al. (1993)</xref>. As the filament moves offshore, it is balanced geostrophically, as was observed in transect A (<xref ref-type="fig" rid="f11">
<bold>Figure&#xa0;11C</bold>
</xref>). The enhancement of &#x3b5;<sub>o</sub> within the filament waters of group-F, the increase of vertical shear at the base of the mixed layer, and the resulting &#x394;h &gt; 0 are summarized in <xref ref-type="fig" rid="f12">
<bold>Figure&#xa0;12</bold>
</xref>.</p>
<fig id="f12" position="float">
<label>Figure&#xa0;12</label>
<caption>
<p>Horizontally averaged vertical profiles of turbulent kinetic energy (TKE) dissipation rates (<italic>&#x3b5;<sub>o</sub>
</italic>, gray bars), buoyancy frequency squared (<italic>N<sup>2</sup>
</italic> cph, dashed red profiles), and vertical shear squared (<italic>Sh<sup>2</sup>
</italic> s<sup>-1</sup>, violet profiles) for stations of <bold>(A)</bold> group-F (where &#x394;<italic>h</italic> &gt; 0) and <bold>(B)</bold> stations of group-nF (where &#x394;<italic>h</italic> &gt; 0). The horizontal dashed and solid lines represent the average mixed layer depth (<italic>h<sub>&#x3c1;</sub>
</italic>) and mixing layer depth (<italic>h<sub>&#x3b5;</sub>
</italic>, m) for both transects, respectively. Note that <italic>&#x3b5;</italic>
<sub>o</sub> and <italic>N<sup>2</sup>
</italic> were vertically averaged to 10 m bins to ensure numerical consistency with the vertical resolution of <italic>Sh<sup>2</sup>
</italic>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g012.tif"/>
</fig>
<p>In a modeling study, <xref ref-type="bibr" rid="B72">Small et&#xa0;al. (2012)</xref> argued that shear instability below the mixed layer may be generated in large part by propagating inertial waves, which ultimately increase the entrainment of cold waters from below the thermocline. Although it was not the aim of the present study to evaluate inertial wave activity, the lack of a time series of velocity currents did not allow for the presence of such near-inertial oscillations to be corroborated.</p>
</sec>
<sec id="s3_5">
<label>3.5</label>
<title>Implications of the entrainment process</title>
<p>The entrainment of cold, nutrient-rich waters from below the pycnocline to the surface layers and the subsequent deepening of the mixed layer are sensitive to turbulent mixing and the depth of the upper boundary layer. However, most bulk mixed layer models (<xref ref-type="bibr" rid="B50">Kraus and Turner, 1967</xref>; <xref ref-type="bibr" rid="B58">Niiler and Kraus, 1977</xref>; <xref ref-type="bibr" rid="B32">Gaspar, 1988</xref>) do not account for either (<italic>a</italic>) vertical shear as a source of TKE or (<italic>b</italic>) variable <inline-formula>
<mml:math display="inline" id="im175">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. Thus, such models are inappropriate for frontal areas with baroclinicity in which shallow <inline-formula>
<mml:math display="inline" id="im176">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> values are driven by the rising of the pycnocline and in which breaking internal waves may be important for the generation of strong sheared flows.</p>
<p>Accordingly, in the case of (<italic>a</italic>), we took into account the DIT term, which is described in Eq. (5). It is assumed that turbulent entrainment can occur only when active mixing in a stratified fluid is strong enough to overcome buoyancy effects and erode the pycnocline, that is when <inline-formula>
<mml:math display="inline" id="im177">
<mml:mrow>
<mml:msub>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:msub>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="bibr" rid="B17">Dewey and Moum, 1990</xref>; <xref ref-type="bibr" rid="B45">Inoue et&#xa0;al., 2010</xref>). Given that we had direct measurements of <inline-formula>
<mml:math display="inline" id="im178">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, we restricted our analysis to stations in which <inline-formula>
<mml:math display="inline" id="im179">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> was available and <inline-formula>
<mml:math display="inline" id="im180">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>. In the case of (<italic>b</italic>), we considered the diapycnal turbulent buoyancy flux integrated over the entrainment zone, <inline-formula>
<mml:math display="inline" id="im181">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. This term represents a TKE sink in the entrainment zone when <inline-formula>
<mml:math display="inline" id="im182">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, as the energy is consumed when stratification breaks down. The procedure to obtain <inline-formula>
<mml:math display="inline" id="im183">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is described in <xref ref-type="app" rid="app1">Appendix A</xref>. Thus, the integration of the dissipation term over the entire active mixing layer <inline-formula>
<mml:math display="inline" id="im184">
<mml:mrow>
<mml:munderover>
<mml:mo>&#x222b;</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mn>0</mml:mn>
</mml:munderover>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>z</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> should also be considered, similarly to what can be observed in <xref ref-type="bibr" rid="B17">Dewey and Moum (1990)</xref>. By including these considerations in Eq. (5), the TKE-based entrainment parameterization can be described by the following equation:</p>
<disp-formula>
<label>(8)</label>
<mml:math display="block" id="M8">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>m</mml:mi>
<mml:mn>2</mml:mn>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>m</mml:mi>
<mml:mn>3</mml:mn>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msubsup>
<mml:mi>u</mml:mi>
<mml:mo>*</mml:mo>
<mml:mn>3</mml:mn>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:mn>0.5</mml:mn>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mi>&#x394;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mn>0.5</mml:mn>
<mml:mrow>
<mml:mo stretchy="false">[</mml:mo>
<mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>b</mml:mi>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:msup>
<mml:mi>u</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>+</mml:mo>
<mml:mi>&#x3b4;</mml:mi>
<mml:msup>
<mml:mi>v</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Unlike other entrainment parameterizations, Eq. (8) considers TKE sources and sinks due to mechanical stirring by means of <inline-formula>
<mml:math display="inline" id="im185">
<mml:mrow>
<mml:msub>
<mml:mi>u</mml:mi>
<mml:mo>*</mml:mo>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, vertical shear at the base of <inline-formula>
<mml:math display="inline" id="im186">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> through the DIT term, buoyancy fluxes at the surface and turbulent buoyancy fluxes at the entrainment zone (i.e., <inline-formula>
<mml:math display="inline" id="im187">
<mml:mrow>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mi>o</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im188">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>), and TKE dissipation across the layer in which active mixing operates. The results from Eq. (8) yield mean entrainment rates of <inline-formula>
<mml:math display="inline" id="im189">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:mn>6.99</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb1;</mml:mo>
<mml:mn>5</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
<mml:msup>
<mml:mrow><mml:mo>&#xa0;</mml:mo><mml:mtext>m&#xa0;s</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> (~6 m d<sup>-1</sup>), which differ by a factor of 6 when compared to those of <inline-formula>
<mml:math display="inline" id="im190">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:mn>1.51</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb1;</mml:mo>
<mml:mn>5</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
<mml:msup>
<mml:mrow>
<mml:mtext>m&#xa0;s</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> (1 m d<sup>-1</sup>) (<xref ref-type="fig" rid="f10">
<bold>Figure&#xa0;10</bold>
</xref>). The addition of the DIT term resulted in a slight increase in the entrainment rates, with a mean value of <inline-formula>
<mml:math display="inline" id="im191">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:mn>1.92</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb1;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>5</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mo>&#xb1;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mtext>m&#xa0;s</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> (~2 m d<sup>-1</sup>).</p>
<p>It is important to note that although this analysis was based on a 1D approach, several scales can coexist within ocean fronts. Two-dimensional (2D) submesoscale processes in an upwelling filament may play major roles in mixing by serving as pathways that convey the kinetic energy extracted from the mean flow to the final dissipation range throughout the secondary instabilities of the submesoscale flow (<xref ref-type="bibr" rid="B9">Capet et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B13">D&#x2019;Asaro et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B77">Thomas et&#xa0;al., 2013</xref>). To determine whether this type of process affected the front in this study, the vertical distributions of potential vorticity and submesoscale energy sources were evaluated (<xref ref-type="app" rid="app2">Appendix B</xref>). As a first approximation, our results indicate that at the moment of sampling, submesoscale 2D instabilities, such as symmetric instabilities, appeared to weakly affect the frontal structure. The cross-front wind in transect A (see <xref ref-type="fig" rid="f14">
<bold>Figure&#xa0;B.1</bold>
</xref> in <xref ref-type="app" rid="app2">Appendix B</xref>) was likely insufficient to induce Ekman transport, which would cause the front to be susceptible to symmetric instabilities (e.g., <xref ref-type="bibr" rid="B13">D&#x2019;Asaro et&#xa0;al., 2011</xref>). Thus, a 1D perspective based on the TKE balance is appropriate in this study. Furthermore, <xref ref-type="bibr" rid="B13">D&#x2019;Asaro et&#xa0;al. (2011)</xref> indicated that although turbulent mixing near fronts can arise from these instabilities, this does not seem to be responsible for the observed elevated mixing in the Cape Ghir upwelling filament front.</p>
</sec>
<sec id="s3_6">
<label>3.6</label>
<title>Implications of the dissipation term</title>
<p>The TKE budget and consequently entrainment are highly sensitive to the parameterization of the dissipation term, which has proved to be a dominant sink in the energy balance (e.g., <xref ref-type="bibr" rid="B15">Deardorff, 1983</xref>; <xref ref-type="bibr" rid="B32">Gaspar, 1988</xref>; <xref ref-type="bibr" rid="B79">Wada et&#xa0;al., 2009</xref>). Our results highlight that the role of the dissipation term may be particularly important in frontal areas such as upwelling filaments. However, a dependence on observational <inline-formula>
<mml:math display="inline" id="im192">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> values may make it difficult to include parameterizations of the dissipation term in bulk mixed-layer models.</p>
<p>We assumed a well-mixed upper ocean layer and averaged <inline-formula>
<mml:math display="inline" id="im193">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> from the near-surface (far enough away from the effects of breaking waves at the surface ~16 m) to <inline-formula>
<mml:math display="inline" id="im194">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and compared this to the parameterized <inline-formula>
<mml:math display="inline" id="im195">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>G</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> included in <inline-formula>
<mml:math display="inline" id="im196">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> following the methods of <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref>. Our results, which are shown in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>, indicate that the normalized parameterized dissipation term (<inline-formula>
<mml:math display="inline" id="im205">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>G</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) can be overestimated by two orders of magnitude with respect to the observed dissipation term (<inline-formula>
<mml:math display="inline" id="im206">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>).</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Turbulent kinetic energy dissipation terms (<italic>&#x3b5;</italic>) averaged horizontally for stations of group-F (within the filament), group-nF (outside the filament), and all microstructure stations.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Averaged <italic>&#x3b5;</italic> (m<sup>3</sup> s<sup>-3</sup>)</th>
<th valign="top" align="center">group-F</th>
<th valign="top" align="center">group-nF</th>
<th valign="top" align="center">Total</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" rowspan="2">
<inline-formula>
<mml:math display="inline" id="im197">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>G</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">1.14 &#xd7; 10<sup>-6</sup>
</td>
<td valign="top" align="center">2.82 &#xd7; 10<sup>-6</sup>
</td>
<td valign="top" align="center">1.98 &#xd7; 10<sup>-6</sup>
</td>
</tr>
<tr>
<td valign="top" align="center">(&#xb1; 1.09 &#xd7; 10<sup>-6</sup>)</td>
<td valign="top" align="center">(&#xb1; 2.06 &#xd7; 10<sup>-6</sup>)</td>
<td valign="top" align="center">(&#xb1; 1.79 &#xd7; 10<sup>-6</sup>)</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="2">
<inline-formula>
<mml:math display="inline" id="im198">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">3.37 &#xd7; 10<sup>-8</sup>
</td>
<td valign="top" align="center">9.53&#xd7; 10<sup>-9</sup>
</td>
<td valign="top" align="center">2.16 &#xd7; 10<sup>-8</sup>
</td>
</tr>
<tr>
<td valign="top" align="center">(&#xb1; 3.07 &#xd7; 10<sup>-8</sup>)</td>
<td valign="top" align="center">(&#xb1; 1.01&#xd7; 10<sup>-8</sup>)</td>
<td valign="top" align="center">(&#xb1; 2.50&#xd7; 10<sup>-8</sup>)</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="2">
<inline-formula>
<mml:math display="inline" id="im199">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">7.07 &#xd7; 10<sup>-8</sup>
</td>
<td valign="top" align="center">3.36 &#xd7; 10<sup>-7</sup>
</td>
<td valign="top" align="center">2.03 &#xd7; 10<sup>-7</sup>
</td>
</tr>
<tr>
<td valign="top" align="center">(&#xb1; 8.62 &#xd7; 10<sup>-8</sup>)</td>
<td valign="top" align="center">(&#xb1; 3.32 &#xd7; 10<sup>-7</sup>)</td>
<td valign="top" align="center">(&#xb1; 2.68 &#xd7; 10<sup>-7</sup>)</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="2">
<inline-formula>
<mml:math display="inline" id="im200">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>o</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
</td>
<td valign="top" align="center">1.01 &#xd7; 10<sup>-6</sup>
</td>
<td valign="top" align="center">3.10 &#xd7; 10<sup>-7</sup>
</td>
<td valign="top" align="center">6.59 &#xd7; 10<sup>-7</sup>
</td>
</tr>
<tr>
<td valign="top" align="center">(&#xb1; 1.60 &#xd7; 10<sup>-6</sup>)</td>
<td valign="top" align="center">(&#xb1; 3.42 &#xd7; 10<sup>-7</sup>)</td>
<td valign="top" align="center">(&#xb1; 1.51 &#xd7; 10<sup>-6</sup>)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>&#x3b5; (either observed or parametrized) was vertically averaged from the surface to different layers as follows: <inline-formula>
<mml:math display="inline" id="im201">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>G</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the parameterized dissipation term following <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref> averaged up to the mixed layer depth; <inline-formula>
<mml:math display="inline" id="im202">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the observed dissipation term averaged until mixing layer depth; <inline-formula>
<mml:math display="inline" id="im203">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the parameterized dissipation term [&#x3b5;] averaged up to a mixing layer depth identified at a vertical resolution of 10 m following the scaled dissipation profile of  <xref ref-type="bibr" rid="B35">Gregg (1989)</xref>; <inline-formula>
<mml:math display="inline" id="im204">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>o</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
<mml:mi>m</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the observed dissipation term averaged up to an observed mixing layer depth identified at a vertical resolution of 10 m. Standard deviations appear in parenthesis.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>In the context of a 1D TKE balance, most of the energy transferred to the interface is dissipated by viscosity. The remaining energy is stored in the form of potential energy that must work against buoyancy forces or as energy that will be subsequently converted to kinetic energy by entrainment. As a result of this 1D balance, the dissipation term may be overestimated due to entrainment velocities that are lower than expected, which suggests that the parameterized dissipation term extracts more energy from the system and leaves little energy for entrainment. Thus, decreasing the dissipation term in entrainment parameterizations to match the observed dissipation term will lead to an enhancement of <inline-formula>
<mml:math display="inline" id="im207">
<mml:mrow>
<mml:msub>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. This can be seen in <xref ref-type="fig" rid="f10">
<bold>Figure&#xa0;10</bold>
</xref>, in which <inline-formula>
<mml:math display="inline" id="im208">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> exhibits velocities that are higher than those given by <inline-formula>
<mml:math display="inline" id="im209">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>G</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im210">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>D</mml:mi>
<mml:mi>I</mml:mi>
<mml:mi>T</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>. This suggests that the dissipation term within the entrainment parameterization of <xref ref-type="bibr" rid="B32">Gaspar (1988)</xref> might not be well resolved in frontal systems.</p>
<p>We also compared <inline-formula>
<mml:math display="inline" id="im211">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> to the internal wave scaling (<inline-formula>
<mml:math display="inline" id="im212">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) proposed by <xref ref-type="bibr" rid="B35">Gregg (1989)</xref>, which takes the internal wave spectrum into account:</p>
<disp-formula>
<label>(9)</label>
<mml:math display="block" id="M9">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mn>1.8</mml:mn>
<mml:mo>&#xd7;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>6</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mrow>
<mml:mo stretchy="false">[</mml:mo>
<mml:mrow>
<mml:mi>f</mml:mi>
<mml:mi>c</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>s</mml:mi>
<mml:msup>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>o</mml:mi>
</mml:mrow>
<mml:mi>f</mml:mi>
</mml:mfrac>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo stretchy="false">]</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msup>
<mml:mi>N</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:msup>
<mml:mi>o</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>S</mml:mi>
<mml:msup>
<mml:mi>h</mml:mi>
<mml:mn>4</mml:mn>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:msubsup>
<mml:mi>S</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mi>M</mml:mi>
</mml:mrow>
<mml:mn>4</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>No</italic> = 5.2 &#xd7; 10<sup>-3</sup> (rad s<sup>-1</sup>), and <italic>S<sub>GM</sub>
</italic> = 1.91 &#xd7; 10<sup>-5</sup> (s<sup>-1</sup>) is the Garret-Munk shear spectrum (<xref ref-type="bibr" rid="B35">Gregg, 1989</xref>).</p>
<p>Although the fine-scale parameterizations of <inline-formula>
<mml:math display="inline" id="im213">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> differ from the observed values of <inline-formula>
<mml:math display="inline" id="im214">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, when overestimating or underestimating <inline-formula>
<mml:math display="inline" id="im215">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> along the water column (<xref ref-type="fig" rid="f13">
<bold>Figure&#xa0;13</bold>
</xref>), the averaged dissipation term <inline-formula>
<mml:math display="inline" id="im218">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msubsup>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> resembles the observed dissipation term <inline-formula>
<mml:math display="inline" id="im219">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>o</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, particularly when this is averaged within 10 m depth intervals (<inline-formula>
<mml:math display="inline" id="im220">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>o</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:msub>
<mml:mo>|</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). It is worth noting that the mixing layer depths obtained from <inline-formula>
<mml:math display="inline" id="im221">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> are quantitatively similar to those given by the observed <inline-formula>
<mml:math display="inline" id="im222">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>o</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="fig" rid="f10">
<bold>Figure&#xa0;10A</bold>
</xref>). A comparison between mixing layer depths and the resulting entrainment zones is shown in <xref ref-type="fig" rid="f10">
<bold>Figures&#xa0;10A, B</bold>
</xref>. Note that for coarser resolutions, <inline-formula>
<mml:math display="inline" id="im223">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mrow>
<mml:mi>&#x3b5;</mml:mi>
<mml:mn>10</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is always deeper than the mixed layer depth, resulting in <inline-formula>
<mml:math display="inline" id="im224">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> for all stations. Moreover, the results also show agreement between <inline-formula>
<mml:math display="inline" id="im225">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im226">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> in that both show enhanced turbulent mixing in stations of group-F (<xref ref-type="fig" rid="f13">
<bold>Figure&#xa0;13</bold>
</xref> and <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>).</p>
<fig id="f13" position="float">
<label>Figure&#xa0;13</label>
<caption>
<p>Comparison of turbulent kinetic energy dissipation rates, <italic>&#x3b5;</italic> (m<sup>2</sup> s<sup>-3</sup>), spatially averaged for stations of <bold>(A)</bold> group-F (within the filament) and <bold>(B)</bold> group-nF (outside the filament). Black profiles are the observed dissipation rates, <inline-formula>
<mml:math display="inline" id="im216">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> (m<sup>2</sup> s<sup>-3</sup>). The red profiles are the dissipation rates obtained following the methodology of <xref ref-type="bibr" rid="B35">Gregg (1989)</xref>, <inline-formula>
<mml:math display="inline" id="im217">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> (m<sup>2</sup> s<sup>-3</sup>). Note the different scales of the x-axis.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g013.tif"/>
</fig>
<p>These results indicate that the observed dissipation term in the proposed entrainment parameterization of Eq. (8) could be replaced by the scaling of <xref ref-type="bibr" rid="B35">Gregg (1989)</xref> (hereinafter <inline-formula>
<mml:math display="inline" id="im227">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>). The mean value of <inline-formula>
<mml:math display="inline" id="im228">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> was 6.91 &#xd7; 10<sup>-5</sup> &#xb1; 5 &#xd7; 10<sup>-5</sup> m s<sup>-1</sup> (6 m d<sup>-1</sup>), which is similar to <inline-formula>
<mml:math display="inline" id="im229">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> , as indicated in <xref ref-type="fig" rid="f10">
<bold>Figure&#xa0;10B</bold>
</xref>. This result also suggests that the role of internal waves acting at the base of the mixed layer should not be ignored given the agreement between <inline-formula>
<mml:math display="inline" id="im230">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im231">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>.</p>
</sec>
<sec id="s3_7">
<label>3.7</label>
<title>Implications of the nutrient fluxes</title>
<p>It is to be expected that the enhancement of diapycnal entrainment rates observed in group-F stations would favor the elevation of deep nutrient-rich water to the photic layer. In the same study region, <xref ref-type="bibr" rid="B3">Arcos-Pulido et&#xa0;al. (2014)</xref> observed that onshore stations, which belong to group-F, exhibited diapycnal nutrient fluxes, <inline-formula>
<mml:math display="inline" id="im232">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>, which were one order of magnitude greater than those observed in offshore stations calculated at a reference layer located 20 to 30 m below the mixed layer.</p>
<p>To verify that the enhancement of entrainment rates in the upwelling filament contributed to increasing nutrient availability below the mixed layer, we computed <inline-formula>
<mml:math display="inline" id="im233">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> immediately below <inline-formula>
<mml:math display="inline" id="im234">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> for each microstructure station with the following equation:</p>
<disp-formula>
<label>(10)</label>
<mml:math display="block" id="M10">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>K</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mfrac>
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>N</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <inline-formula>
<mml:math display="inline" id="im235">
<mml:mrow>
<mml:msub>
<mml:mi>K</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the diapycnal diffusivity coefficient given by the classic expression (<inline-formula>
<mml:math display="inline" id="im236">
<mml:mrow>
<mml:msub>
<mml:mi>K</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mtext>&#x393;</mml:mtext>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo stretchy="false">/</mml:mo>
<mml:msup>
<mml:mi>N</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>) of <xref ref-type="bibr" rid="B60">Osborn (1980)</xref>. Buoyancy diffusivity and heat were assumed to be of the same order. The mixing efficiency (&#x413;) is the ratio between the vertical buoyancy flux and <inline-formula>
<mml:math display="inline" id="im237">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> set to 0.2 (<xref ref-type="bibr" rid="B59">Oakey, 1982</xref>). The nutrient concentration, which consists of the sum of nitrites and nitrates (<italic>Nut</italic>), was linearly interpolated to a vertical 2-m grid given the microstructure vertical resolution.</p>
<p>Nutrient gradients (<inline-formula>
<mml:math display="inline" id="im238">
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>) were calculated over depths ranging from 5 m to 20&#x2013;30 m below <inline-formula>
<mml:math display="inline" id="im239">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> depending on the availability of nutrient (<xref ref-type="bibr" rid="B71">Schafstall et&#xa0;al., 2010</xref>). This differs from what was reported by <xref ref-type="bibr" rid="B3">Arcos-Pulido et&#xa0;al. (2014)</xref>, who calculated fluxes for a reference layer far below <inline-formula>
<mml:math display="inline" id="im240">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. Then, <inline-formula>
<mml:math display="inline" id="im241">
<mml:mrow>
<mml:msub>
<mml:mi>K</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> was averaged for the same depth range over which <inline-formula>
<mml:math display="inline" id="im242">
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> was calculated. Positive values of <inline-formula>
<mml:math display="inline" id="im243">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> imply an upward transport of nutrients from the pycnocline to the surface layers, where they may then be assimilated by phytoplankton.</p>
<p>The diapycnal nutrient fluxes (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>) indicated that stations of group-F exhibited large <inline-formula>
<mml:math display="inline" id="im245">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> immediately below the mixed layer associated with maximal diapycnal mixing, which was three times larger than those of group-nF stations. However, station 34 was an exception to this pattern. Station 34 was located adjacent to the filament edge (see <xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6A</bold>
</xref>) and was surveyed under weak wind, non-favorable convection, and low <inline-formula>
<mml:math display="inline" id="im246">
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>V</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> conditions. Station 34 also exhibited more intense <italic>Lo</italic> at the mixed layer depth (<xref ref-type="fig" rid="f9">
<bold>Figure&#xa0;9</bold>
</xref>) and high nutrient gradients (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>) when compared to the other stations in its group. In this case, <inline-formula>
<mml:math display="inline" id="im247">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> was nearly zero at station 34, indicating that both <inline-formula>
<mml:math display="inline" id="im248">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im249">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> were similar. Stations of group-F that were near station 34 (i.e., 30, 32, and 36) also exhibited high vertical nutrient gradients (not shown). This suggests that it cannot be ruled out that station 34 was influenced by either the upwelling filament or other processes, such as breaking internal waves or Langmuir cells, capable of promoting intense vertical mixing at the base of the mixed layer (<xref ref-type="bibr" rid="B29">Fl&#xf3;r et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B71">Schafstall et&#xa0;al., 2010</xref>). However, the lack of microstructure observations and time series of physical variables did not allow for an evaluation of the underlying causes. Stations 48 and 50 also exhibited positive <inline-formula>
<mml:math display="inline" id="im232a">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula>. Despite forming part of group-nF, these stations exhibited &#x394;h &gt; 0, indicating that favorable entrainment conditions were present, yet their fluxes were lower than those of group-F stations</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Average values of the diapycnal diffusivity coefficient (<italic>K<sub>z</sub>
</italic>, m<sup>2</sup> s<sup>-1</sup>), vertical nutrient gradient (nitrite + nitrate, <inline-formula>
<mml:math display="inline" id="im244">
<mml:mrow>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>z</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>, mmol m<sup>-4</sup>), and diapycnal nutrient flux <italic>F<sub>z</sub>(Nut)</italic> mmol m<sup>-2</sup> d<sup>-1</sup>) below the mixed layer for each microstructure station.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Station</th>
<th valign="top" align="center">
<italic>K<sub>z</sub>
</italic>
</th>
<th valign="top" align="center">&#x2202;<italic>N</italic>/&#x2202;<italic>z</italic>
</th>
<th valign="top" align="center">
<italic>F<sub>z</sub>(Nut)</italic>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">24</td>
<td valign="top" align="center">0.34 &#xd7; 10<sup>-4</sup> (&#xb1;0.53 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">+0.003 (&#xb1;0.013)</td>
<td valign="top" align="center">-0.02 (&#xb1;0.05)</td>
</tr>
<tr>
<td valign="top" align="left">34</td>
<td valign="top" align="center">0.58 &#xd7; 10<sup>-4</sup> (&#xb1;0.73 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.02 (&#xb1;0.01)</td>
<td valign="top" align="center">+0.10 (&#xb1;0.12)</td>
</tr>
<tr>
<td valign="top" align="left">36</td>
<td valign="top" align="center">0.55 &#xd7; 10<sup>-4</sup> (&#xb1;0.69 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">+0.002 (&#xb1;0.003)</td>
<td valign="top" align="center">-0.02 (&#xb1;0.04)</td>
</tr>
<tr>
<td valign="top" align="left">38<sup>*</sup>
</td>
<td valign="top" align="center">2.21 &#xd7; 10<sup>-4</sup> (&#xb1;7.01 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.007 (&#xb1;0.007)</td>
<td valign="top" align="center">+0.21 (&#xb1;0.78)</td>
</tr>
<tr>
<td valign="top" align="left">40<sup>*</sup>
</td>
<td valign="top" align="center">8.78 &#xd7; 10<sup>-4</sup> (&#xb1;8.85 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.02 (&#xb1;0.02)</td>
<td valign="top" align="center">+1.21 (&#xb1;1.58)</td>
</tr>
<tr>
<td valign="top" align="left">42<sup>*</sup>
</td>
<td valign="top" align="center">6.27 V&#xd7; 10<sup>-4</sup> (&#xb1;8.64 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.06 (&#xb1;0.002)</td>
<td valign="top" align="center">+3.87 (&#xb1;4.47)</td>
</tr>
<tr>
<td valign="top" align="left">44<sup>*</sup>
</td>
<td valign="top" align="center">0.52 &#xd7; 10<sup>-4</sup> (&#xb1;0.45 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.23 (&#xb1;0.14)</td>
<td valign="top" align="center">+0.57 (&#xb1;0.87)</td>
</tr>
<tr>
<td valign="top" align="left">46<sup>*</sup>
</td>
<td valign="top" align="center">2.56 &#xd7; 10<sup>-4</sup> (&#xb1;3.14 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.03 (&#xb1;0.01)</td>
<td valign="top" align="center">+0.87 (&#xb1;1.33)</td>
</tr>
<tr>
<td valign="top" align="left">48</td>
<td valign="top" align="center">0.57 &#xd7; 10<sup>-4</sup> (&#xb1;0.87 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.003 (&#xb1;0.007)</td>
<td valign="top" align="center">+0.01 (&#xb1;0.01)</td>
</tr>
<tr>
<td valign="top" align="left">50</td>
<td valign="top" align="center">7.86 &#xd7; 10<sup>-4</sup> (&#xb1;12.0 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.002 (&#xb1;0.009)</td>
<td valign="top" align="center">+0.01 (&#xb1;0.06)</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>group-nF</bold>
</td>
<td valign="top" align="center">1.98 &#xd7; 10<sup>-4</sup> (&#xb1;3.29 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-0.002 (&#xb1;001)</td>
<td valign="top" align="center">+0.02 (&#xb1;0.05)</td>
</tr>
<tr>
<td valign="top" align="left">
<bold>group-F</bold>
</td>
<td valign="top" align="center">4.27 &#xd7; 10<sup>-4</sup> (&#xb1;3.26 &#xd7; 10<sup>-4</sup>)</td>
<td valign="top" align="center">-07 (&#xb1;0.09)</td>
<td valign="top" align="center">+1.35 (&#xb1;1.465)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Standard deviation is shown in parenthesis.</p>
</fn>
<fn>
<p>(<sup>*</sup>) Microstructure stations impacted by the upwelling filament (i.e., Group-F).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>In general, stations of group-F exhibited diapycnal nutrient fluxes that were two orders of magnitude larger than those of group-nF stations. The values of <inline-formula>
<mml:math display="inline" id="im250">
<mml:mrow>
<mml:msub>
<mml:mi>F</mml:mi>
<mml:mi>z</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> for stations of group-F were at the upper end of those reported for the North Atlantic (<xref ref-type="bibr" rid="B4">Baham&#xf3;n et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B20">Dietze et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B34">Gonz&#xe1;lez-D&#xe1;vila et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B56">Mouri&#xf1;o-Carballido et&#xa0;al., 2011</xref>) but of the same order of magnitude as those of other EBUS sites (<xref ref-type="bibr" rid="B40">Hales et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B39">Hales et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B52">Li et&#xa0;al., 2012</xref>). Most studies conducted in the North Atlantic have not included calculations of nutrient fluxes immediately below the mixed layer using direct microstructure observations nor in highly turbulent environments such as frontal systems. The values reported for frontal systems in other EBUS range from 5.2 (mmol m<sup>-2</sup> d<sup>-1</sup>) in the California Current EBUS to 19.11 (mmol m<sup>-2</sup> d<sup>-1</sup>) in the Chilean EBUS (<xref ref-type="bibr" rid="B40">Hales et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B39">Hales et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B52">Li et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B11">Corredor-Acosta et&#xa0;al., 2020</xref>). The latter values agree with our maxima of 8.34 (mmol m<sup>-2</sup> d<sup>-1</sup>) for station 42 (group-F) and average of 1.35 (mmol m<sup>-2</sup> d<sup>-1</sup>) for all stations influenced by the upwelling filament front.</p>
</sec>
</sec>
<sec id="s4" sec-type="conclusions">
<label>4</label>
<title>Conclusions</title>
<p>We analyzed the sources and sinks of TKE that control the upper boundary layer through a simple 1D TKE-balance. This study was conducted in the submesoscale upwelling filament of Cape Ghir using satellite imagery and <italic>in-situ</italic> hydrographic measurements, including novel <inline-formula>
<mml:math display="inline" id="im251">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> measurements from a microstructure profiler. The main results of this study are summarized as follows:</p>
<list list-type="bullet">
<list-item>
<p>Microstructure profiles revealed an enhancement of turbulent mixing within the upwelling filament front where pycnoclines shoal. The absence of strong winds and the presence of moderate buoyancy and heat fluxes enabled us to consider vertical shear as a relevant source of TKE, which is usually neglected in entrainment parameterizations.</p>
</list-item>
<list-item>
<p>Enhanced turbulence and the morphology of the front promoted the formation of regions of active mixing, which were identified by the depth of the mixing layer exceeding the depth of the mixed layer, resulting in local areas of <inline-formula>
<mml:math display="inline" id="im252">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> (<xref ref-type="fig" rid="f8">
<bold>Figures&#xa0;8</bold>
</xref>, <xref ref-type="fig" rid="f9">
<bold>9</bold>
</xref>, <xref ref-type="fig" rid="f12">
<bold>12</bold>
</xref>). This created optimal conditions for the entrance of nutrient-rich waters from the pycnocline to the upper boundary layer <italic>via</italic> entrainment. This theory is supported by positive <inline-formula>
<mml:math display="inline" id="im253">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> values in areas directly affected by the upwelling filament in which the pycnocline is close to the surface. In such cases, turbulent mixing becomes more efficient within a smaller volume of water in the upper ocean layer. This highlights the importance of distinguishing between <inline-formula>
<mml:math display="inline" id="im254">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and <inline-formula>
<mml:math display="inline" id="im255">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>.</p>
</list-item>
<list-item>
<p>To quantify the role of entrainment, we included observed values of <inline-formula>
<mml:math display="inline" id="im256">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> and considered <inline-formula>
<mml:math display="inline" id="im257">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula>
<mml:math display="inline" id="im258">
<mml:mrow>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, and shear at the base of the mixed layer. We found that the entrainment rates changed considerably (<inline-formula>
<mml:math display="inline" id="im259">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo>=</mml:mo>
<mml:mn>6</mml:mn>
<mml:msup>
<mml:mrow>
<mml:mtext>m&#xa0;d</mml:mtext>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula>) and were six times greater than those of other parameterizations. We also found that the dissipation term is often overestimated. The resulting low turbulent entrainment velocities could lead to an overestimation of SST in numerical models that include such mixing schemes.</p>
</list-item>
<list-item>
<p>One of the most important results of this study can be summarized by <xref ref-type="fig" rid="f12">
<bold>Figure&#xa0;12</bold>
</xref>. We found that enhanced turbulent mixing within the upwelling filament is associated with an increase in vertical shear. One possible cause of the increase in vertical shear could be the effects of internal waves, which might be particularly effective when the filament is near the coast (transect B) and vertical shear exhibits ageostrophic behavior. This also allows for <inline-formula>
<mml:math display="inline" id="im260">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> to be replaced by simple scaling based on the internal wave model of <xref ref-type="bibr" rid="B35">Gregg (1989)</xref>, <inline-formula>
<mml:math display="inline" id="im261">
<mml:mrow>
<mml:msup>
<mml:mi>&#x3b5;</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> , in the new proposed entrainment parameterization approach. This suggestion is supported by our result of <inline-formula>
<mml:math display="inline" id="im262">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mi>G</mml:mi>
<mml:mn>89</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> being similar to the mean value of <inline-formula>
<mml:math display="inline" id="im263">
<mml:mrow>
<mml:msubsup>
<mml:mi>w</mml:mi>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>.</p>
</list-item>
<list-item>
<p>The diapycnal nutrient fluxes presented in this study reinforce the idea that enhanced diapycnal entrainment in upwelling filaments with <inline-formula>
<mml:math display="inline" id="im264">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> associated with high levels of diapycnal mixing favors the uplift of deep, nutrient-rich waters to the photic layer in submesoscale frontal systems.</p>
</list-item>
</list>
<p>This study aimed to establish a basis for future research that includes <italic>in situ</italic> data with proper spatiotemporal resolution and numerical simulations. The inclusion of additional TKE sources in entrainment studies, such as the energy of breaking internal waves that affects <inline-formula>
<mml:math display="inline" id="im265">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> and turbulent Langmuir circulation, may improve our understanding of turbulence in the upper boundary layer of submesoscale fronts.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6" sec-type="author-contributions">
<title>Author contributions</title>
<p>SE-A: Write the manuscript, processing of turbulence data, atmospheric data, data analysis, parameterization, figures, and tables. &#xc1;R-S: Expert in the diapycnal mixing process, supervised the manuscript and the processing of the data, analysis, and parameterizations. AN-G: Expert in turbulence ocean process, advised about the symmetrical instabilities process that improves the original idea and in consequence the manuscript and supervised the manuscript. LG-W: Satellite Data access and its processing of sea surface temperature and surface chlorophyll. ME: Processing of ADCP data. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>This study was made possible by a PhD grant awarded to the first author, which was supported by the Universidad de Las Palmas de Gran Canaria. The hydrographic data necessary to reproduce this study were provided by projects PROMECA-2010 (CTM2009-06993-448 E/MAR) and PROMECA (CTM2008-04057) of Universidad de Las Palmas de Gran Canaria, co-founded by European Union (FEDER) and Ministerio de Ciencia e Inovaci&#xf3;n of Spain. The data are available from the corresponding authors upon request (angel.santana@ulpgc.es; sheila.estrada103@doctorandos.ulpgc.es). Satellite imagery were downloaded from NASA&#x2019;s Ocean Color Web for Moderate Resolution Imaging Spectroradiometer (MODIS) at NASA&#x2019;s Goddard Space Flight Center. Eds. Kuring, N., Bailey, S. W. (<ext-link ext-link-type="uri" xlink:href="http://oceancolor.gsfc.nasa.gov/">http://oceancolor.gsfc.nasa.gov/</ext-link>). The altimeter products were produced by Ssalto/Duacs and distributed by Aviso, with support from Cnes (<ext-link ext-link-type="uri" xlink:href="http://www.aviso.altimetry.fr/duacs/">http://www.aviso.altimetry.fr/duacs/</ext-link>). The comments of the reviewers and editor greatly improved the manuscript. The authors also thank the captain and crew of <italic>R/V Garc&#xed;a del Cid</italic> (CSIC) as well as all participating scientists for their support during the field survey.</p>
</ack>
<sec id="s7" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s8" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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<surname>Zaron</surname> <given-names>E. D.</given-names>
</name>
<name>
<surname>Moum</surname> <given-names>J. N.</given-names>
</name>
</person-group> (<year>2009</year>). <article-title>A new look at Richardson number mixing schemes for equatorial ocean modeling</article-title>. <source>J. Phys. Oceanography</source> <volume>39</volume>, <fpage>2652</fpage>&#x2013;<lpage>2664</lpage>. doi:&#xa0;<pub-id pub-id-type="doi">10.1175/2009JPO4133.1</pub-id>
</citation>
</ref>
</ref-list>
<app-group>
<app id="app1">
<title>Appendix A. <inline-formula>
<mml:math display="inline" id="im266">
<mml:mrow>
<mml:msub>
<mml:mrow><mml:mo>(</mml:mo><mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mstyle mathvariant="bold" mathsize="normal">
<mml:mi>&#x394;</mml:mi>
</mml:mstyle>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup><mml:mo>)</mml:mo></mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>
</title>
<p>According to <xref ref-type="bibr" rid="B60">Osborn (1980)</xref>, the diapycnal turbulent buoyancy flux (<inline-formula>
<mml:math display="inline" id="im267">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msup>
<mml:mi>w</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
<mml:msup>
<mml:mi>b</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>) can be scaled as:</p>
<disp-formula>
<label>(A.1)</label>
<mml:math display="block" id="M11">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msup>
<mml:mi>w</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
<mml:msup>
<mml:mi>b</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:mo>=</mml:mo>
<mml:mtext>&#x393;</mml:mtext>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where the mixing efficiency (&#x413;) is the ratio of the vertical buoyancy flux to <inline-formula>
<mml:math display="inline" id="im268">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>. We employed a constant value of 0.2 (e.g., <xref ref-type="bibr" rid="B82">Zaron and Moum, 2009</xref>). To consider the diapycnal turbulent buoyancy flux that contributes to the TKE budget in the entrainment zone, a parameterization derived from <xref ref-type="bibr" rid="B60">Osborn (1980)</xref> was integrated over the entrainment zone, <inline-formula>
<mml:math display="inline" id="im269">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> (i.e., from <inline-formula>
<mml:math display="inline" id="im270">
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> to <inline-formula>
<mml:math display="inline" id="im271">
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>) to obtain <inline-formula>
<mml:math display="inline" id="im272">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>:</p>
<disp-formula>
<label>(A.2)</label>
<mml:math display="block" id="M12">
<mml:mrow>
<mml:munderover>
<mml:mo>&#x222b;</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:munderover>
<mml:mover accent="true">
<mml:mrow>
<mml:msup>
<mml:mi>w</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
<mml:msup>
<mml:mi>b</mml:mi>
<mml:mo>&#x2032;</mml:mo>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="true">&#xaf;</mml:mo>
</mml:mover>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
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<mml:mi>z</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:munderover>
<mml:mo>&#x222b;</mml:mo>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3b5;</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>h</mml:mi>
<mml:mi>&#x3c1;</mml:mi>
</mml:msub>
</mml:mrow>
</mml:munderover>
<mml:mn>0.2</mml:mn>
<mml:msub>
<mml:mi>&#x3b5;</mml:mi>
<mml:mi>o</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>z</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:msup>
<mml:mi>m</mml:mi>
<mml:mn>3</mml:mn>
</mml:msup>
<mml:msup>
<mml:mi>s</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>Due to the dependence on <inline-formula>
<mml:math display="inline" id="im273">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>, <inline-formula>
<mml:math display="inline" id="im274">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:msubsup>
<mml:mi>J</mml:mi>
<mml:mi>b</mml:mi>
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mi>I</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is only a TKE sink when <inline-formula>
<mml:math display="inline" id="im275">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula>, thus it will be a sink in filament waters given that energy is consumed to break stratification below the mixed layer.</p>
</app>
<app id="app2">
<title>Appendix B. Submesoscale Processes</title>
<p>Turbulence is a three-dimensional (3D) process. To restrict the entrainment analysis to a 1D approach, we required a prior examination of 2D instabilities that could occur in frontal structures.</p>
<p>Following the analysis of <xref ref-type="bibr" rid="B77">Thomas et&#xa0;al. (2013)</xref>, potential vorticity (<italic>q</italic>) can be determined as <inline-formula>
<mml:math display="inline" id="im276">
<mml:mrow>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mi>A</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>f</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>v</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>x</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msup>
<mml:mi>N</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>x</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:msup>
<mml:mi>f</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> for transect A and similarly as <inline-formula>
<mml:math display="inline" id="im277">
<mml:mrow>
<mml:msub>
<mml:mi>q</mml:mi>
<mml:mi>B</mml:mi>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mrow>
<mml:mi>f</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>u</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>y</mml:mi>
</mml:mrow>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:msup>
<mml:mi>N</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mo>&#x2212;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mo stretchy="false">/</mml:mo>
<mml:mo>&#x2202;</mml:mo>
<mml:mi>y</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:msup>
<mml:mi>f</mml:mi>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:math>
</inline-formula> for transect B. Despite the lack of synoptic measurements, an analysis of <italic>q</italic> revealed positive values for along-front <italic>q<sub>A</sub>
</italic> (<xref ref-type="app" rid="app2">
<bold>Figure&#xa0;B.1A</bold>
</xref>, indicating stable conditions (e.g., <xref ref-type="bibr" rid="B13">D&#x2019;Asaro et&#xa0;al., 2011</xref>). Transect B (<xref ref-type="app" rid="app2">
<bold>Figure&#xa0;B.1B</bold>
</xref>) exhibited a similar pattern to that of transect A in the along-front <italic>q<sub>B</sub>
</italic>, with slightly near zero values at locations where isopycnals outcropped to the surface and <inline-formula>
<mml:math display="inline" id="im278">
<mml:mrow>
<mml:mtext>&#x394;</mml:mtext>
<mml:mi>h</mml:mi>
<mml:mo>&gt;</mml:mo>
<mml:mn>0</mml:mn>
</mml:mrow>
</mml:math>
</inline-formula> (i.e., at the upwelling filament). These results provide no immediate evidence for symmetric instabilities, which was supported by the presence of cross-front winds in transect A (<xref ref-type="fig" rid="f14">
<bold>Figure&#xa0;B.1</bold>
</xref>). This indicates that a 1D turbulent approach is appropriate for this case study.</p>
<fig id="f14" position="float">
<label>Figure&#xa0;B.1</label>
<caption>
<p>Upper panels: wind speed (u<sub>r</sub>, m s<sup>-1</sup>) with the respective wind direction (clockwise from North). Lower panels: cross-stream sections of potential
vorticity (q, s<sup>-3</sup>) for (A) transect A and (B) transect B. The dashed lines correspond to mixed layer depths (h<sub>&#x03C1;</sub>). The solid lines denote mixing layer
depths (h<sub>&#x03B5;</sub>, m).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1113879-g014.tif"/>
</fig>
</app>
</app-group>
</back>
</article>