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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2023.1114337</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Comparison of alive and dead benthic foraminiferal fauna off the Changjiang Estuary: Understanding water-mass properties and taphonomic processes</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Jiang</surname>
<given-names>Feng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2120705"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Fan</surname>
<given-names>Daidu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1415204"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhao</surname>
<given-names>Quanhong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wu</surname>
<given-names>Yijing</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ren</surname>
<given-names>Fahui</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Yan</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1241326"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Ang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>State Key Laboratory of Marine Geology, Tongji University</institution>, <addr-line>Shanghai</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Laboratory of Marine Geology, Qingdao National Laboratory for Marine Science and Technology</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>State Key Laboratory of Estuarine and Coastal Research, East China Normal University</institution>, <addr-line>Shanghai</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Yifei Zhao, Nanjing Normal University, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Qiang Yao, Louisiana State University Agricultural Center, United States; Feifei Wang, Qingdao Institute of Marine Geology (QIMG), China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Daidu Fan, <email xlink:href="mailto:ddfan@tongji.edu.cn">ddfan@tongji.edu.cn</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Coastal Ocean Processes, a section of the journal Frontiers in Marine Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>20</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1114337</elocation-id>
<history>
<date date-type="received">
<day>02</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>01</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Jiang, Fan, Zhao, Wu, Ren, Liu and Li</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Jiang, Fan, Zhao, Wu, Ren, Liu and Li</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Benthic foraminifera (BF) are utilized in palaeo-environmental reconstruction based on our understanding of how living individuals respond to environmental variations. However, there is still a lack of empirical insight into how non-environmental factors, such as taphonomic processes, influence the preservations of fossil BF in strata. In this study, we compare the spatial distribution and composition of alive and dead BF fauna in surface sediments to elucidate how well fossil foraminiferal fauna mirror quasi-contemporary alive BF groups indicative of different water masses off a mega-river (Changjiang) estuary, which is characterized by intense and complex river-sea interactions. On-site measurements of bottom water salinity, temperature, and dissolved oxygen were conducted in the summer to determine water mass properties. A same-site comparison of alive (Rose Bengal stained) and dead foraminiferal fauna in surface sediment samples over 73 stations was then carried out. Q-mode Hierarchical clustering analysis was used to differentiate foraminiferal assemblages based on the relative abundance of common species. Three distinct regions with different water-mass properties were identified. The distribution pattern of dead foraminiferal fauna is mainly inherited from alive fauna, while the density and diversity of the dead fauna were found to be higher than those of the alive one. Both alive and dead fauna were clustered into four assemblages. A few common alive species (small-agglutinated and thin-calcareous) were rarely found in dead fauna, and a few common dead species (preferring low temperature and indicating allochthonous sources) were rarely present in alive fauna. The alive foraminiferal abundance and diversity were mainly determined by food resources and environmental properties of salinity and temperature. Alive foraminiferal assemblages were separated by different water masses determined by river-sea interactions off the Changjiang Estuary. The &#x201c;time-averaging&#x201d; effect was found to be responsible for the higher density and diversity of the dead fauna. Disintegration of agglutinated tests, dissolution of calcareous tests and selective transportation were observed to contribute to the different species compositions between the alive and dead fauna. Nevertheless, indicative species-environment relations in alive and taphocoenose fauna were found to be almost homologous among most common species. This suggests that distinct benthic foraminiferal assemblages can be used to effectively differentiate between different water masses in the study coastal seas.</p>
</abstract>
<kwd-group>
<kwd>benthic foraminifera</kwd>
<kwd>coastal seas</kwd>
<kwd>surface sediment</kwd>
<kwd>shelf circulations</kwd>
<kwd>postmortem processes</kwd>
<kwd>water mass</kwd>
</kwd-group>
<counts>
<fig-count count="7"/>
<table-count count="0"/>
<equation-count count="1"/>
<ref-count count="71"/>
<page-count count="17"/>
<word-count count="5814"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>    <p>Benthic foraminifera (BF) are single-celled organisms that are widely distributed in marginal seas and are often used as a reliable proxy to indicate palaeoceanographic changes due to their high sensitivity to environmental conditions (<xref ref-type="bibr" rid="B51">Sch&#xf6;nfeld and Zahn, 2000</xref>; <xref ref-type="bibr" rid="B12">Evans et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B1">Abrantes et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B6">Dai et al., 2018</xref>; <xref ref-type="bibr" rid="B69">Zhao et al., 2018</xref>; <xref ref-type="bibr" rid="B49">Ren et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B28">Jiang et&#xa0;al., 2021</xref>). This time-tested methodology is also highly dependent on baseline data regarding the response and sensitivity of alive BF to various biological, chemical and physical conditions (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>). To understand how taphocoenose BF (including alive and dead BF) are buried and fossilized, hence, a comparative study between alive and dead benthic foraminiferal fauna in surface sediments is needed to explore the effects of taphonomic processes on the composition and preservation of BF, and whether the fossil BF accurately mirror the quasi-contemporary living faunal groups. Such research has been a focus of interest for paleontologists worldwide for the past few decades (<xref ref-type="bibr" rid="B29">Jorissen and Wittling, 1999</xref>; <xref ref-type="bibr" rid="B24">Horton and Murray, 2006</xref>; <xref ref-type="bibr" rid="B3">Bouchet et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B58">Wang et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B53">Stefanoudis et al., 2017</xref>; <xref ref-type="bibr" rid="B65">Ye et&#xa0;al., 2021</xref>).</p>
<p>Previous studies have demonstrated that water-mass properties, such as bottom-water salinity (BWS), temperature (BWT), dissolved oxygen (DO), food availability, and sediment composition, are essential in determining the living benthic foraminiferal composition (<xref ref-type="bibr" rid="B22">Gupta, 1999</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B34">Lei et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B26">Jernas et&#xa0;al., 2018</xref>). Furthermore, taphonomic processes, such as the destruction, dissolution, and transportation of tests have been indicated to alter the living and dead faunas (<xref ref-type="bibr" rid="B18">Gooday and Hughes, 2002</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B2">Berkeley et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B15">Glover et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B11">Duros et&#xa0;al., 2012</xref>). Thus, further research into these taphonomic processes is essential to accurately interpret BF data and associated paleoenvironmental variations.</p>
<p>Comparative studies between living and dead BF in dynamic estuarine and shelf environments are remarkably rare (<xref ref-type="bibr" rid="B42">Mendes et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B16">Goineau et&#xa0;al., 2015</xref>). The mega-Changjiang Estuary and broad shelf of the eastern China seas are characterized by complex interactions of different water masses with distinct physical and chemical properties (<xref ref-type="bibr" rid="B54">Su, 1998</xref>; <xref ref-type="bibr" rid="B46">Naimie et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B63">Yang et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B39">Liu et&#xa0;al., 2021</xref>), hence, serving as an ideal platform to conduct such comparative study. In the East China Sea (ECS), the quantitative relationship between contemporary benthic foraminiferal distributions in surface sediments and the associated controlling environmental factors have been well discussed, significantly improving our understanding of common BF inhabiting the estuary and shelf (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B70">Zheng, 1988</xref>; <xref ref-type="bibr" rid="B68">Zhao et al., 2009</xref>; <xref ref-type="bibr" rid="B33">Lei and Li, 2016</xref>; <xref ref-type="bibr" rid="B62">Xu et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B60">Wang et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B21">Guo et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B66">Zhang et al., 2020</xref>). However, the differences between <italic>in-situ</italic> living and dead BF have so far been little studied. Thus, large data gap exists in the impacts of taphonomic processes on changing the compositions from living to dead foraminiferal fauna.</p>
<p>This study focuses on the Changjiang Estuary and its adjacent coastal sea, which are characterized by notable environmental gradients in terms of oceanographic, biological, and sediment compositions. Except for on-site observations of water-mass properties, analyses of living and dead benthic foraminiferal fauna in surface sediments were conducted in detail to assess their structures (abundance, diversity and species compositions). Multivariate statistical methods were employed to cluster stations into different assemblage types based on species compositions. Comparisons between water-mass and maps of faunal structures were designed to quantify the role of water-mass properties in determining faunal structures. The differences between living and dead faunal structures were used to assess effects of taphonomic processes. Furthermore, relationships among the common species and multiple environmental parameters were established by a linear method of redundance analysis in living and taphocoenose fauna to validate reliability of the marine environmental index.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Oceanographic and sedimentary settings of the study coastal sea</title>
<p>The study coastal sea is located off the Changjiang Estuary, including the northwestern part of the ECS and the southwestern part of the Yellow Sea (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). It is characterized by intense interactions of the Changjiang Diluted Water (CDW), coastal currents and the intrusions of the Kuroshio Current (KC) and its branches, which are strongly affected by seasonal East Asian Monsoon activities. In summer, the southeasterly monsoon wind stress enhances the eastern and northeastern expansion of the CDW, separating the southerly YSCC and the northerly ZFCC (<xref ref-type="bibr" rid="B54">Su, 1998</xref>; <xref ref-type="bibr" rid="B46">Naimie et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B20">Guan and Fang, 2006</xref>). In addition, the warm and salty branched-flows driven by the KC move northwards throughout the year, intruding into the ECS inner shelf at the bottom along the 50 m isobath (<xref ref-type="bibr" rid="B63">Yang et&#xa0;al., 2018</xref>). Water masses from diverse sources possess distinct physical and chemical properties, creating a high environmental heterogeneity in the study area.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Schematic diagram of oceanic circulation patterns in summer in the eastern China seas (after <xref ref-type="bibr" rid="B32">Lee et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B55">Su and Yuan, 2005</xref>; <xref ref-type="bibr" rid="B20">Guan and Fang, 2006</xref>; <xref ref-type="bibr" rid="B64">Yang et&#xa0;al., 2012</xref>), and <bold>(B)</bold> distribution of 73 sampling stations off the Changjiang Estuary. Acronyms in <bold>(A)</bold> and their full expressions are KC, Kuroshio Current; NKBC, nearshore Kuroshio branch current; TSWC, Tsushima warm current; TWC, Taiwan warm current; YSCC, Yellow Sea costal current; ZFCC, Zhejiang-Fujian costal current; KCC, Korean coastal current; and CDW, Changjiang diluted water; those in <bold>(B)</bold> are NB, the North Branch; SB, the South Branch; NC, the North Channel; and SC, the South Channel of the Changjiang Estuary.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g001.tif"/>
</fig>
<p>The complex hydrodynamical conditions and sediment sources result in the patchy distribution of fine-grained mud, coarse-grained sand, and mixed deposits off the Changjiang Estuary. Generally, muddy and sandy depositions prevail respectively in the inner and outer belts off the Changjiang Estuary, while the narrow patch of sand and mud mixture lies in between (<xref ref-type="bibr" rid="B48">Qiao et&#xa0;al., 2017</xref>). The sedimentation rates deduced from <sup>210</sup>Pb data generally decrease both eastward and southward from the Changjiang subaqueous delta where a maximum sedimentation rate of &gt;4.0 cm/yr occurs (<xref ref-type="bibr" rid="B14">Gao et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B27">Jia et&#xa0;al., 2018</xref>).</p>
</sec>
<sec id="s3" sec-type="materials|methods">
<label>3</label>
<title>Materials and methods</title>
<sec id="s3_1">
<label>3.1</label>
<title>Oceanographic surveys and sediment sampling</title>
<p>A cruise survey was conducted in and off the Changjiang Estuary (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref>) from 6 to 22 July in 2014 on board <italic>R/V</italic> &#x201c;<italic>Runjiang-1</italic>&#x201d;. Water depth, BWS and BWT were recorded using a CTD (conductivity, temperature and depth; Model: SBE-25, USA). DO in bottom water samples was measured using the Winkler titration method (<xref ref-type="bibr" rid="B10">Dickson, 1994</xref>). Seventy-three sediment samples were collected from the water depths of 7.5 m to 67.0 m (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref> using a stainless-steel sediment grab sampler, and the top layers (0-2 cm thick) were taken for grain-size measurements and living and dead benthic foraminiferal analyses.</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Grain-size test</title>
<p>Grain-size analysis were conducted on all 73 surface sediment samples. All samples were pretreated with 30% hydrogen peroxide to remove organic matter and then with 10% diluted hydrochloric acid to remove carbonates, followed by repeated washing with de-ionized water and then dispersed in an ultrasonic vibrator for several minutes. The particle-size distribution was measured with a laser-diffraction Beckman Coulter LS230, ranging from 0.375 to 2,000 &#x3bc;m. The calculation of the particle sizes relies on the theory of <xref ref-type="bibr" rid="B13">Folk and Ward (1957)</xref>.</p>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Benthic foraminiferal analysis</title>
<p>All 73 surface sediment samples for foraminiferal analysis were soaked and thoroughly mixed with a methanol and Rose Bengal solution (1.0 g/L) for the purpose of tinting living individuals to distinguish them from dead ones immediately after collection on board. These samples were dried and weighed, and then were wet-sieved through a 63 &#x3bc;m-sieve in the lab. The coarse fraction (&gt;63 &#x3bc;m) was dried and split, and the split sample was examined completely for foraminiferal compositions. Benthic species were identified and quantified under a stereomicroscope with continuous zooming up to a maximum amplification of 40&#xd7;. Living specimens were identified by the presence of Rose Bengal-stained protoplasm in their tests, including those that were entirely stained or those with the last one or two chambers been unstained (<xref ref-type="bibr" rid="B9">De Stigter et&#xa0;al., 1998</xref>).Taxonomic identification mainly followed the protocol outlined by <xref ref-type="bibr" rid="B70">Zheng (1988)</xref>; <xref ref-type="bibr" rid="B61">Wang et&#xa0;al. (1988)</xref>, and <xref ref-type="bibr" rid="B33">Lei and Li (2016)</xref>.</p>
<p>Faunal abundance (<italic>N</italic>, individuals ind./g dry weight of sediment) and foraminiferal species richness (H&#x2032;, Shannon-Wiener diversity index based on calculation of equation (1), <xref ref-type="bibr" rid="B52">Shannon, 1984</xref>) were calculated for living and dead foraminiferal communities on raw data. Benthic species with relative abundances of &gt;5% in at least three samples were regarded as common species in the study coastal sea (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>).</p>
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<p>Additionally, we quantitatively interpreted the living and dead foraminiferal ecology by utilizing multivariate statistical methods based on ordination and classification methods such as Q-mode Hierarchical clustering analysis (HCA) and redundancy analysis (RDA). HCA was used to classify the distribution of foraminiferal groups and subgroups into homogeneous assemblage zones. RDA was applied to quantify the relationships between faunal structures and environmental variables.</p>
</sec>
</sec>
<sec id="s4" sec-type="results">
<label>4</label>
<title>Results</title>
<sec id="s4_1">
<label>4.1</label>
<title>Bottom-water oceanographic conditions and sediment size compositions</title>
<p>The distribution patterns of BWS and BWT featured the elongated bands roughly parallel to the coast (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>). The BWS increased seaward from 13.4 to 34.6, while the BWT decreased eastward from 25.2 &#xb0;C to18.6 &#xb0;C. The northern coastal water body off the North Branch (NB) and Jiangsu coast had much higher DO than the coastal water body off the Hangzhou Bay and Zhejiang coast. The latter enclosed a subzone with DO values lower than 4.0 mg/L (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>). Sandy sediments (&gt;63 &#x3bc;m) occupied the northeastern region known as the Yangtze Shoal and the rest area was covered by silty clay or silt (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>    <p>Distribution patterns of bottom-water oceanographic indexes including <bold>(A)</bold> salinity (&#x2030;), <bold>(B)</bold> temperature (&#xb0;C), and <bold>(C)</bold> DO (mg/L), and <bold>(D)</bold> mean grain size (&#x3bc;m) of surface sediments. Detailed data are included in <xref ref-type="supplementary-material" rid="ST1">
<bold>Supporting Information Table S1</bold>
</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g002.tif"/>
</fig>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Foraminiferal abundance and species richness</title>
<sec id="s4_2_1">
<label>4.2.1</label>
<title>Abundance of living and dead BF</title>
<p>The living abundance varied from 0 to 1,845 ind./g (<xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>-Living BF2), with an average of 76 ind./g. The peak abundance (&gt;100 ind./g) occurred at the inner belt off the South Channel (SC) and the Hangzhou Bay (blue to red in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). The intermediate abundance (20-100 ind./g) occurred at south of the peak abundance zone, the inner belt off Zhejiang coast (dark purple to blue in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). A narrow belt with an abundance between 10 and 20 ind./g extended north-south at the outer band off the Hangzhou Bay and Zhejiang coast (dark purple in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). More than a half of all stations had living abundance of less than 10 ind./g, typically located off the NB and Jiangsu coast (light purple in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>).</p>    <p>The dead abundance ranged between 0 ind./g and 11,586 ind./g, with a mean of 844 ind./g (<xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>-Dead BF2). The peak abundance (&gt;1000 ind./g) occurred at stations off Zhejiang coast (blue to red in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). The intermediate abundance (100-1000 ind./g) occurred in the inner and outer regions off the SC and the Hangzhou Bay (dark purple to green in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). The less abundance (&lt;100 ind./g) occurred at coastal zone off the Jiangsu coast and the NB, together with a narrow N-S belt between the inner peak and the outer intermediate abundance belts off the Hangzhou Bay (light purple in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>).</p>
</sec>
<sec id="s5_5_2">
<label>4.2.2</label>
<title>Diversity of living and dead BF</title>
<p>Shannon-Wiener diversity index (H&#x2032;) for living fauna ranged from 0.5 to 2.9 (<xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>-Living BF2). The southernmost region had the lowest faunal diversity. The inner bands off the Changjiang Estuary and the Hangzhou Bay had a lower diversity (H&#x2032;&lt;1.5), while their outer counterparts had a relatively higher diversity (H&#x2032;&gt;1.5) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>).</p>    <p>The H&#x2032; values of dead fauna had a relatively higher and wider range (0-3.4) (<xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>-Dead BF2) than the living one. Additionally, there were some differences in their spatial patterns (<xref ref-type="fig" rid="f3">
<bold>Figures&#xa0;3C, D</bold>
</xref>
<bold>)</bold>. The inner region off the Changjiang Estuary and the region off Zhejiang coast exhibited a relatively lower diversity (H&#x2032;&lt;2.0, blue in <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>
<bold>)</bold>. The remanent area was characterized by two higher H&#x2032; (&gt;2.5) bands, which were interspersed with a lower H&#x2032; belt (2.0-2.5) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>).</p>
</sec>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Species compositions and spatial partitions of benthic foraminiferal assemblages</title>
<sec id="s4_3_1">
<label>4.3.1</label>
<title>Clusters analyses and spatial distribution of living assemblages</title>    <p>Living species were identified among 15,158 counts of stained individuals (<xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>-Living BF1). Twenty-three species with an abundance over 5% from at least 3 stations were identified, accounting for 87% of living fauna (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). The dominant species include <italic>Verneuilinulla advena</italic> (<italic>V. advena</italic>), <italic>Bolivina striatula</italic> (<italic>B. striatula</italic>) and <italic>Nonionella jacksonensis</italic> (<italic>N. jacksonensis</italic>), which were found in over 50 stations.</p>
<p>The resultant dendrograms of Q-mode HCA based on the 23 common species demonstrate four clusters: FI-a, FI-b, FII and FIII (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). Twenty-three stations are organized into Cluster FI-a in terms of the dominance of <italic>N. jacksonensis</italic> (37.2% on average), <italic>Cribrononion subincertum</italic> (<italic>C. subincertum</italic>, 12.1%) and <italic>Verneuilinulla advena</italic> (<italic>V. advena</italic>, 6.6%), and they generally congregate at the inner band off Jiangsu coast and the Changjiang Estuary (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). Cluster FI-b includes 10 stations off the SC and the Hangzhou Bay (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>), with <italic>Florilus atlanticus</italic> (<italic>F. atlanticus</italic>, 17.5%), <italic>Polskiammina asiatica</italic> (<italic>P. asiatica</italic>, 15.5%), <italic>Ammonia pauciloculata (A. pauciloculata</italic>, 7.2%<italic>)</italic>, and <italic>N. jacksonensis</italic> (5.2%) being the dominate species (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). Cluster FII consists of 16 stations dominated by <italic>Florilus decorus</italic> (<italic>F. decorus</italic>, 24.7%), <italic>A. convexidorsa</italic> (13.1%), <italic>B. striatula</italic> (12.0%), <italic>V. advena</italic> (11.0%), <italic>Ammonia tepida (A. tepida</italic>, 10.0%<italic>)</italic>, and <italic>N. jacksonensis</italic> (9.9%) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), which are mainly located at the outer region off Jiangsu coast and the Changjiang Estuary (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). Cluster FIII includes 17 stations, with <italic>Ammonia compressiuscula</italic> (<italic>A. compressiuscula</italic>, 27.5%), <italic>F. atlanticus</italic> (7.2%), <italic>Cancris auriculus</italic> (<italic>C. auriculus</italic>, 6.6%), <italic>B. marginata</italic> (4.7%) and <italic>B. robusta</italic> (3.4%) being the dominate species (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), and they are mainly located at the outer region off the SC and the Hangzhou Bay (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>).</p>
</sec>
<sec id="s4_3_2">
<label>4.3.2</label>
<title>Clusters analyses and spatial distribution of dead assemblages</title>    <p>The species were identified among 16,075 counts of dead individuals (<xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>, Dead BF1). Twenty-eight species with an abundance over 5% from at least 3 stations were identified, accounting for 80% of dead fauna. (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). The dominant species that frequently appeared at over 50 stations are <italic>Bolivina robusta</italic> (<italic>B. robusta</italic>), <italic>Bulimina marginata</italic> (<italic>B. marginata</italic>), <italic>A. tepida</italic>, <italic>A. compressiuscula</italic>, <italic>Elphidium advenum</italic> (<italic>E. advenum</italic>) and <italic>F. atlanticus</italic>.</p>
<p>The resultant dendrograms of Q-mode HCA based on 28 common species distinguish four clusters: FI&#x2032;-a, FI&#x2032;-b, FII&#x2032; and FIII&#x2032; (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). Thirty-seven stations are regarded as Cluster FI&#x2032;-a in terms of the dominance of <italic>Epistominella naraensis</italic> (<italic>E. naraensis</italic>, 10.9%), <italic>B. robusta</italic> (7.7%), <italic>B. marginata</italic> (7.6%), and <italic>F. decorus</italic> (5.8%) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), and they are majorly distributed in the northern half of study coastal sea (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). Thirteen stations of Cluster FI&#x2032;-b, with <italic>F. atlanticus</italic> (14.6%), <italic>N. jacksonensis</italic> (11.8%), and <italic>A. tepida</italic> (8.2%) being the dominate species (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), and they are majorly distributed in the inner belts off the SC, the Hangzhou Bay and Zhejiang coast (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). Seven stations are classified as Cluster FII&#x2032; based on high abundance of <italic>Ammonia ketienziensis</italic> (<italic>A. ketienziensis</italic>, 19.4%), <italic>B. robusta</italic> (11.3%), <italic>E. advenum</italic> (7.8%), <italic>A. compressiuscula</italic> (7.0%) and <italic>Q. seminulangulata</italic> (5.9%) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), which are scattered in the outer belt off Jiangsu coast and the NB (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>). Another 16 stations are grouped into Cluster FIII&#x2032; showing high abundance of <italic>A. compressiuscula</italic> (23.4%), <italic>Quinqueloculina lamarckiana</italic> (<italic>Q</italic>. <italic>lamarckiana</italic>, 12.5%), <italic>B. marginata</italic> (7.1%), <italic>A. tepida</italic> (6.4%), and <italic>B. robusta</italic> (6.4%) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), and they are mainly present off the southern Hangzhou Bay and the outer belt off Zhejiang coast (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s5" sec-type="discussion">
<label>5</label>
<title>Discussion</title>
<sec id="s5_1">
<label>5.1</label>
<title>Effects of intense river-sea interactions on water-mass properties in summer</title>
<p>The dominant hydrodynamic processes in relatively shallow eastern China seas are strongly affected by massive freshwater outflows, tides, monsoon-related waves and currents, and the KC and its branches (<xref ref-type="bibr" rid="B54">Su, 1998</xref>; <xref ref-type="bibr" rid="B46">Naimie et&#xa0;al., 2001</xref>). Interactions among the above-mentioned factors result in different circulation regimes and water masses that are generally diagnosed by their varied physical properties, especially temperature and salinity (<xref ref-type="bibr" rid="B47">Park and Chu, 2006</xref>; <xref ref-type="bibr" rid="B4">Chen, 2009</xref>).</p>
<p>In summer, the inner belt of the study coastal sea is generally occupied by the water mass WI of low BWS (15.0-30.0) and high BWT (21.0&#x2013;25.0&#xb0;C) (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>), resulting from a mixture of the Changjiang diluted water and alongshore currents (<xref ref-type="bibr" rid="B4">Chen, 2009</xref>). For example, the water mass to the south of the Changjiang Estuary is significantly impacted by the southward fresher CDW and the northward ZFCC (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>; <xref ref-type="bibr" rid="B32">Lee et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B55">Su and Yuan, 2005</xref>; <xref ref-type="bibr" rid="B39">Liu et&#xa0;al., 2021</xref>). The NE offshore area (the outer region off Jiangsu coast and the Changjiang Estuary) is prevailed by the water mass WII with high BWS (30.0-32.5) and low BWT (19.0-21.0&#xb0;C) (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>), receiving interactive effects of the northeastward CDW, the southward YSCC and the northward TWC (<xref ref-type="fig" rid="f6">
<bold>Figure&#xa0;6</bold>
</xref>; <xref ref-type="bibr" rid="B32">Lee et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B55">Su and Yuan, 2005</xref>; <xref ref-type="bibr" rid="B39">Liu et&#xa0;al., 2021</xref>). The SE offshore area (the outer region off the Hangzhou Bay and Zhejiang coast) is occupied by the water mass WIII with high BWS (32.5-34.6), low BWT (ca. 19.0 &#xb0;C) and relative lower DO (&lt;4.0 mg/L) (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A&#x2013;C</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>), resulting from strong intrusion of salty Kuroshio branch currents (<xref ref-type="bibr" rid="B63">Yang et&#xa0;al., 2018</xref>). Meanwhile the relative lower DO values in the WIII waters (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>) could also be driven by water column stratification and organic matter decomposition near the bottom in summer (<xref ref-type="bibr" rid="B40">Li et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B71">Zhu et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B57">Wang et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B67">Zhang et al., 2021</xref>).</p>
</sec>
<sec id="s5_2">
<label>5.2</label>
<title>Impacts of water-mass properties on living benthic foraminiferal distributions</title>
<p>Living individuals are short-lived and highly sensitive to ecological conditions during their growing stage. Marine ecological system is complex and multivariate due to dynamic interactions between environmental factors (salinity, temperature, DO, substrate and food supply) and living organisms (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>).</p>
<sec id="s5_2_1">
<label>5.2.1</label>
<title>Controlling factors of spatial variations in living abundance and diversity</title>
<p>The considerably high abundance (&gt;100 ind./g) was observed at the inner region off the SC and the Hangzhou Bay (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). This region has a low salinity and high temperature (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>), whereas abundant nutrient inputs from the densely-populated river plume and coastal upwelling cause frequent algal bloom (<xref ref-type="bibr" rid="B56">Tseng et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B25">Hu and Wang, 2016</xref>; <xref ref-type="bibr" rid="B59">Wang et&#xa0;al., 2019</xref>). In the marine ecosystems, phytoplankton serves as the main food source for BF (<xref ref-type="bibr" rid="B44">Murray, 2006</xref>). Being as the most important and leading environment parameters, food quality and quantity can shape the foraminiferal abundance (<xref ref-type="bibr" rid="B23">Gustafsson and Nordberg, 1999</xref>; <xref ref-type="bibr" rid="B5">Contreras-Rosales et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B43">Mojtahid et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B58">Wang et&#xa0;al., 2016</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>    <p>Distribution of living and dead benthic foraminiferal abundance <bold>(A</bold>, <bold>B)</bold>, and distribution of Shannon-Wiener diversity (H&#x2032;) of living and dead benthic foraminiferal fauna <bold>(C</bold>, <bold>D)</bold>. Detailed data are included in <xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g003.tif"/>
</fig>
<p>The occurrence of lower abundance (0-20 ind./g) at the inner region off Jiangsu coast and the NB (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>) was mainly ascribed to lower salinity (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>) (<xref ref-type="bibr" rid="B34">Lei et&#xa0;al., 2017</xref>). Moreover, the inner region is characterized by high suspended sediment concentrations, where low transparency of the water mass limits the growth of primary producers consequently lowering the abundance (<xref ref-type="bibr" rid="B37">Li et&#xa0;al., 2020</xref>). To the east of 123&#xb0;E, the lower abundance (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>) was constrained by nutrient deficits from the river plumes (<xref ref-type="bibr" rid="B59">Wang et&#xa0;al., 2019</xref>).</p>
<p>The occurrence of high diversity (H&#x2032;&gt;1.5) in the outer region of the studied coastal sea was generally coincident with high BWS (30.0-34.6), low BWT (18.6-21.0 &#xb0;C), and lower DO (2.3-5.0 mg/L) (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2</bold>
</xref>, <xref ref-type="fig" rid="f3">
<bold>3C</bold>
</xref>). Previous studies indicated that the diversity is positively correlated to salinity (<xref ref-type="bibr" rid="B34">Lei et&#xa0;al., 2017</xref>) and the normal salinity (33.0) in the ECS provokes foraminiferal diversity (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>). In addition, a temperature ranging between 18.0 and 24.0&#xb0;C could promote the growth of various foraminiferal species, but higher temperature may in turn reduce the species richness (<xref ref-type="bibr" rid="B34">Lei et&#xa0;al., 2017</xref>). Moreover, the lower DO in the outer region may also play a side-role in promoting higher foraminiferal diversity (<xref ref-type="bibr" rid="B35">Levin et&#xa0;al., 2009</xref>).</p>
</sec>
<sec id="s5_2_2">
<label>5.2.2</label>
<title>Spatial partitions of living clusters determined by distinct water-mass properties</title>
<p>Four clusters of living common species in the study coastal sea were determined by Q-mode HCA as FI-a, FI-b, FII and FIII (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), and their spatial partitions were closely linked to the distribution of three water masses in this area (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>    <p>Relative abundance (%) of common species of living <bold>(A)</bold> and dead <bold>(B)</bold> benthic foraminiferal fauna. Species shown in black are common for both living and dead fauna, and those in green or orange are common only for dead or living fauna. The dendrograms of Q-mode HCA are plotted in the left to show four clusters of common species: FI-a (FI&#x2032;-a), FI-b (FI&#x2032;-b), FII (FII&#x2032;) and FIII (FIII&#x2032;) for living and dead fauna in different station groups (see <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1B</bold>
</xref> for their locations). Detailed data are included in <xref ref-type="supplementary-material" rid="ST2">
<bold>Supporting Information Table S2</bold>
</xref>-Living BF3 and Dead BF3.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g004.tif"/>
</fig>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>Partition maps of living <bold>(A)</bold> and dead <bold>(B)</bold> benthic foraminiferal assemblages. Blue squares, cyan stars, purple deltas, and green asterisks denote Clusters FI-a, FI-b, FII, and FIII in <bold>(A)</bold>, and FI&#x2032;-a, FI&#x2032;-b, FII&#x2032;, and FIII&#x2032; in <bold>(B)</bold>. See <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> for the information of different clusters and their associated stations.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g005.tif"/>
</fig>
<fig id="f6" position="float">
<label>Figure&#xa0;6</label>
<caption>
<p>General current circulations (<xref ref-type="bibr" rid="B55">Su and Yuan, 2005</xref>; <xref ref-type="bibr" rid="B20">Guan and Fang, 2006</xref>; <xref ref-type="bibr" rid="B63">Yang et&#xa0;al., 2018</xref>) and the distribution of water masses in coastal sea off the Changjiang Estuary in summer. WI: low BWS and high BWT and DO water mass, WII: high BWS and DO and low BWT water mass, and WIII: high BWS and low BWT and DO water mass.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g006.tif"/>
</fig>
<p>Cluster FI-a (dominated by <italic>N. jacksonensis</italic>, <italic>C. subincertum</italic>, and <italic>V. advena</italic>) and Cluster FI-b (dominated by <italic>F. atlanticus</italic>, <italic>P. asiatica</italic>, <italic>A. pauciloculata</italic> and <italic>N. jacksonensis</italic>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>) enriched with low salinity species were prevalent in the inner belt of the study coastal sea, highly coincident with the distribution of the water mass WI (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>). Previous studies also indicated that these species are specifically keen to the estuarine water mass with lower salinity and higher temperature and DO (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B33">Lei and Li, 2016</xref>). Moreover, the <italic>F. atlanticus</italic> and <italic>A. pauciloculata</italic> were recognized as species being particularly influenced by the ZFCC (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>). Thus, the Clusters FI-a and FI-b represent assemblages that are unique to the inner estuarine and coastal sea, which are strongly influenced by the CDW and the ZFCC.</p>
<p>Cluster FII consists of species with a large range of salinity tolerance, from <italic>A. convexidorsa</italic>, a low salinity species to <italic>B. striatula</italic>, a high salinity species (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), prevailed in the outer region off Jiangsu coast and the Changjiang Estuary. The region was coincident with the distribution of the water mass WII (<xref ref-type="fig" rid="f5">
<bold>Figures&#xa0;5A</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>), where high salinity gradient is produced by the mixture of the YSCC (higher salinity and lower temperature) and the CDW (lower salinity and higher temperature) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A, B</bold>
</xref>) (<xref ref-type="bibr" rid="B4">Chen, 2009</xref>).</p>
<p>Cluster FIII consisting of species <italic>A. compressiuscula</italic>, <italic>C. auriculus</italic>, <italic>B. marginata</italic>, and <italic>B. robusta</italic> (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), was prevalent in the outer region off the Hangzhou Bay and Zhejiang coast (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>), where the intrusion of the TWC and the NKBC produces the water mass WIII featuring higher salinity, lower temperature and DO (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A&#x2013;C</bold>
</xref>, <xref ref-type="fig" rid="f6">
<bold>6</bold>
</xref>). The species <italic>A. compressiuscula</italic> and <italic>C. auriculus</italic> have been recognized to thrive well in high salinity waters, while the species <italic>A. compressiuscula</italic>, <italic>B. marginata</italic> and <italic>B. robusta</italic> could adapt well to a lower DO condition (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B19">Gooday and Jorissed, 2012</xref>). Thus, spatial partitions of living assemblages are clearly determined by the distribution of water masses with their distinct oceanographic and ecological properties.</p>
</sec>
</sec>
<sec id="s5_3">
<label>5.3</label>
<title>Taphonomic processes changing the benthic foraminiferal abundance and diversity from living to dead fauna</title>
<p>Taphonomic processes change the abundance, diversity and species composition in surface sediments during transition from living to dead faunas in response to sediment accumulation, destruction and transportation (<xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B15">Glover et&#xa0;al., 2010</xref>).</p>
<sec id="s5_3_1">
<label>5.3.1</label>
<title>Time-averaging effects on dead abundance and diversity</title>
<p>In general, the abundance and diversity of dead BF are rather higher than those of the living ones. For instance, the dead abundance reached &gt;1000 ind./g in the inner region off the SC and the Hangzhou Bay, but the living abundance was only ca. 100 ind./g (<xref ref-type="fig" rid="f3">
<bold>Figures&#xa0;3A, B</bold>
</xref>). Meanwhile, distribution patterns of the two faunal abundance and diversity are relatively comparable (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>
<bold>)</bold>, denoting their close affiliation. This affiliation has been reported to be common in the Bohai Sea, the northern Yellow Sea and the South China Sea (<xref ref-type="bibr" rid="B38">Li et&#xa0;al., 2014</xref>, <xref ref-type="bibr" rid="B36">Li et&#xa0;al., 2021</xref>).</p>
<p>The 2-cm thick surface sediment analyzed in this study represents a depositional period from 0.5 to 4.0 years according to the <sup>210</sup>Pb derived sedimentation rates of 0.5-4.0 cm/yr in the study area (<xref ref-type="bibr" rid="B14">Gao et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B27">Jia et&#xa0;al., 2018</xref>). In contrast, living fauna has much shorter life spans than the depositional period. Thus, it indicates that dead fauna is a burial accumulation of multiple living faunas over a period of time. Such result offers an interpretation for the dissimilarities between living and dead faunas in the surface sediment samples, known as &#x201c;time-averaging&#x201d; effect (<xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B15">Glover et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B30">Kidwell and Tomasovych, 2013</xref>). The sedimentation rates in the inner region off Zhejiang coast are much lower (0.5-1.0 cm/yr) than the others (<xref ref-type="bibr" rid="B14">Gao et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B27">Jia et&#xa0;al., 2018</xref>), hence, a longer time-averaging effect results in a higher dead BF abundance (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). In contrast, the lower diversity (a 2.0-2.5 H&#x2032; belt) of dead fauna in the central study area (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>) was likely due to therein higher sedimentation rates (ca. 2.0-3.0 cm/yr) (<xref ref-type="bibr" rid="B14">Gao et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B27">Jia et&#xa0;al., 2018</xref>).</p>
</sec>
<sec id="s5_3_2">
<label>5.3.2</label>
<title>Impacts of postmortem processes (destruction, transport and reburial) on dead species compositions</title>
<p>In addition to abundance and diversity, the difference of species compositions is quite evident between living and dead fauna in the same sample. Such difference is also obvious in the statistics analytic result of common species over the entire study area. Totally, 23 common species in living fauna are less than 28 in dead fauna (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>
<bold>)</bold>. The 7 common living species, including <italic>Textularia earlandi</italic> (<italic>T.earlandi</italic>), <italic>Bolivina aff. acerosa</italic> (<italic>B.aff.acerosa</italic>), <italic>Hopkinsina pacifica</italic> (<italic>H. pacifica</italic>), <italic>A. pauciloculata</italic>, <italic>C. auriculus</italic>, <italic>Nonionella opima</italic> (<italic>N. opima</italic>) and <italic>Protelphidium tuberculatum</italic> (<italic>P.tuberculatum</italic>) were rare or not present in dead fauna (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). On the contrary, the 12 common species in dead fauna were rare or not present in living fauna, including <italic>Textularia foliacea</italic> (<italic>T. foliacea</italic>), <italic>Quinqueloculina akneriana rotunda</italic> (<italic>Q. akneriana rotunda</italic>), <italic>Q. lamarckiana</italic>, <italic>Spiroloculina indica</italic> (<italic>S. indica</italic>), <italic>Virgulinella fragilis</italic> (<italic>V. fragilis</italic>), <italic>Ammonia confertitesta</italic> (<italic>A. confertitesta</italic>), <italic>E. naraensis</italic>, <italic>Heterolepa subpraecincta</italic> (<italic>H. subpraecincta</italic>), <italic>Cribrononion porisuturalis</italic> (<italic>C. porituralis</italic>), <italic>Astrononion tasmanensis</italic> (<italic>A. tasmanensis</italic>), <italic>E. advenum</italic> and <italic>Elphidium magellanicum</italic> (<italic>E. magellanicum</italic>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>
<bold>)</bold>.</p>
<p>The above-mentioned 7 common species are of small (fine-sand size) agglutinated and thin-shell calcitic tests. Agglutinated tests with small amount of organic cement and loosely cemented walls are susceptible to bacterial or chemical decay of organic matter, to be scarcely fossilized in discernable forms (<xref ref-type="bibr" rid="B45">Murray and Alve, 1999</xref>; <xref ref-type="bibr" rid="B31">Kuhnt et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B33">Lei and Li, 2016</xref>; <xref ref-type="bibr" rid="B8">Dessandier et&#xa0;al., 2018</xref>). Shells of the calcitic species such as <italic>H. pacifica</italic> and <italic>C. auriculus</italic> are very thin and susceptible to destruction and dissolution, leading to a poor preservation (<xref ref-type="bibr" rid="B18">Gooday and Hughes, 2002</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>; <xref ref-type="bibr" rid="B11">Duros et&#xa0;al., 2012</xref>).</p>
<p>There are a few reasons for why the 12 common species in dead fauna were rare or not present in living fauna. First of all, some species can grow in other seasons besides summer when surface sediments were sampled for this study. For example, <italic>T. foliacea</italic> and <italic>Q. lamarckiana</italic> in dead fauna (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>) are marked by large tests, indicating a low-temperature (even below 4.0 &#xb0;C) condition, and BF with calcareous tests such as <italic>S. indica</italic> and <italic>E. naraensis</italic> prefer a water temperature below 17.5 &#xb0;C (<xref ref-type="bibr" rid="B33">Lei and Li, 2016</xref>). These species probably grow in winter and spring before being buried after death. In addition, external sources of dead fauna are expected to be transported by strong currents although living individuals are less likely to be carried away because their reticulopodial network tends to anchor them firmly in the sediments (<xref ref-type="bibr" rid="B17">Goldstein, 1999</xref>; <xref ref-type="bibr" rid="B44">Murray, 2006</xref>). For instance, <italic>E. advenum</italic> and <italic>E. magellanicum</italic> were reportedly to be a typical coastal species along Jiangsu coast and <italic>A. confertitesta</italic> a typical supratidal species (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>). Thus, their common presence in the dead fauna (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>) demonstrates their allochthonous source <italic>via</italic> sediment transport.</p>
</sec>
</sec>
<sec id="s5_4">
<label>5.4</label>
<title>Bio-ecological implications of indicative foraminiferal species</title>
<p>RDA analysis was employed to explore potential correlations between indicative foraminiferal species and key environmental factors (BWS, BWT, DO and sediment size) for both living (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>) and taphocoenose (living + dead) fauna (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7B</bold>
</xref>). As discussed above, living fauna can rapidly respond to environmental conditions, but it needs further investigation to reveal whether species-environmental relationships are consistent between living and taphocoenose fauna or valid for palaeo-environmental reconstruction. In RDA ordination diagrams, longer vectors with smaller angles indicate greater correlation between the BF species and environmental parameters.</p>
<fig id="f7" position="float">
<label>Figure&#xa0;7</label>
<caption>
<p>RDA ordination diagrams of living benthic foraminiferal fauna <bold>(A)</bold> and taphocoenose benthic foraminiferal fauna <bold>(B)</bold> with key environmental variables (BWS, BWT, DO and sediment size) measured in the summer of 2014.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1114337-g007.tif"/>
</fig>
<p>There are quite a few common species that show their persistent relationship with certain environmental parameters before and after burial. The relative abundance of <italic>A. compressiuscula</italic> and <italic>H. nipponica</italic> are positively correlated with water depth and BWS in both living and taphocoenose fauna (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). <italic>A. compressiuscula</italic> is one of the typical species in the middle shelf of the ECS, and <italic>H. nipponica</italic> tends to live in the middle and outer shelf (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B70">Zheng, 1988</xref>; <xref ref-type="bibr" rid="B33">Lei and Li, 2016</xref>). <italic>C. subincertum</italic>, <italic>S. bohaiensis</italic> and <italic>N. jacksonensis</italic> build an inverse relationship with salinity, and <italic>P. asiatica</italic> ties up with temperature (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>
<bold>)</bold>. The two species, <italic>B. robusta</italic> and <italic>B. marginata</italic>, known as the low oxygen foraminiferal species (<xref ref-type="bibr" rid="B19">Gooday and Jorissed, 2012</xref>), show a negative correlation to DO (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>
<bold>)</bold>. Abiotic factors such as grain size also impact foraminiferal assemblages (<xref ref-type="bibr" rid="B41">Magno et&#xa0;al., 2012</xref>). For instance, <italic>A. convexidorsa</italic>, <italic>A. ketienziensis</italic>, <italic>V. advena</italic>, and <italic>F. decorus</italic> prefer sandy setting, while <italic>F. atlanticus</italic> likes clayey seabed (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>
<bold>)</bold>. Our results of the RDA explain the same ecological preferences of the same species in the two faunas. This indicates that the environmental signal in living fauna is preserved in the taphocoenose fauna.</p>
<p>There are also some species to show varied relationships with environmental parameters before and after burial (shown in green in <xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>). <italic>Q. seminulangulata</italic> (stenohaline) in living fauna is positively associated with salinity (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>), but this was not revealed in taphocoenose fauna probably due to reworking process after death (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7B</bold>
</xref>) (<xref ref-type="bibr" rid="B61">Wang et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B70">Zheng, 1988</xref>; <xref ref-type="bibr" rid="B33">Lei and Li, 2016</xref>). <italic>A. tepida</italic>, especially abundant in dead fauna (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>), shows a little association with other environmental factors except grain size (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7</bold>
</xref>
<bold>)</bold>, probably ascribed to its higher capacity of bio-ecological adaptation throughout the year (<xref ref-type="bibr" rid="B7">Debenay et&#xa0;al., 2000</xref>), and it prefers living in a sandy setting (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7A</bold>
</xref>), but may be displaced into a muddy setting after death (<xref ref-type="fig" rid="f7">
<bold>Figure&#xa0;7B</bold>
</xref>). The taphocoenose fauna is built up by combined ecological and taphonomic forces over a period of time, hence taphocoenose species provide a time averaged record integrating different seasonal conditions (<xref ref-type="bibr" rid="B15">Glover et&#xa0;al., 2010</xref>).</p>
</sec>
</sec>
<sec id="s6" sec-type="conclusion">
<label>6</label>
<title>Conclusion</title>
<p>Collectively, our results have demonstrated that living benthic foraminifera (BF) responds sensitively to water-mass properties but dead benthic foraminiferal fauna can be partly reformed by taphonomic forces over a period of time. Food resources (primary productivity) play a key role in affecting living benthic foraminiferal fauna abundance, and the distribution laws of living diversity and salinity are generally consistent. Furthermore, distinct water masses (WI, WII and WIII) with different properties (BWS, BWT and DO) shaped by river-sea interactions explain well the distribution of four living assemblages (FI-a and FI-b, FII, FIII).</p>
<p>The effects of taphonomic processes on dead faunal structures are revealed through comparison between living and dead faunal indices. Because of the &#x201c;time-averaging&#x201d; effect, the dead fauna has higher abundance and diversity than the living fauna, in that the former contains a few species that are not present in the sampling time or location. In addition, the dead fauna may lack certain living species due to their poor preservation ability, such as agglutinated-test species and thin-shell calcitic species.</p>
<p>The taphocoenose fauna is the result of both ecological and taphonomic forces within a given temporal framework. Correlations between the most indicative species and environment variables in both living and taphocoenose fauna remain homologous. Thus, taphocoenose BF in core sediments can be effectively used to reconstruct the past marine environments, although care should be taken with a few species that are prone to heavy taphonomic influences.</p>
</sec>
<sec id="s7" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="s12">
<bold>Supplementary Material</bold>
</xref>. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>FJ: Conceptualization, Methodology, Validation, Formal analysis, Investigation, Writing-Original Draft, Writing-Review &amp; Editing, Visualization. DF: Conceptualization, Resources, Writing-Review &amp; Editing, Supervision, Project administration, Funding acquisition. QZ: Investigation, Writing-Review &amp; Editing. YW: Investigation, Writing-Review &amp; Editing. FR: Investigation, Writing-Review &amp; Editing. AL: Investigation. YL: Writing-Review &amp; Editing. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>This research is jointly funded by the Innovation Program of Shanghai Municipal Education Commission (2021-01-07-00-07- E00093), the National Natural Science Foundation of China (NSFC-41976070, 42206052, 41971007), and the Fundamental Research Funds for the Central Universities (No. ZD-21-202101). </p>
</sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s12" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fmars.2023.1114337/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fmars.2023.1114337/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table_1.xlsx" id="ST1" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet">
<label>Supplementary Table&#xa0;1</label>
<caption>
<p>The Longitude and Latitude of stations, bottom-water oceanographic conditions (water depth, temperature, salinity and dissolve oxygen) and sediment size compositions.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Table_2.xlsx" id="ST2" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet">
<label>Supplementary Table&#xa0;2</label>
<caption>
<p>Dataset of living and dead benthic foraminifera: sheet of Living BF1 is &#x201c;Living BF species counted of all stations&#x201d;, sheet of Living BF2 is &#x201c;Abundance and Shannon-Wiener diversity index (H&#x2032;) of living BF&#x201d;, sheet of Living BF3 is &#x201c;Relative abundance (%) of common species of living BF&#x201d;, sheet of Dead BF1 is &#x201c;Dead BF species counted of all stations&#x201d;, sheet of Dead BF2 is &#x201c;Abundance and Shannon-Wiener diversity index (H&#x2032;) of dead BF&#x201d;, sheet of Dead BF3 is &#x201c;Relative abundance (%) of common species of dead BF&#x201d;.</p>
</caption>
</supplementary-material>
</sec>
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