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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mar. Sci.</journal-id>
<journal-title>Frontiers in Marine Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mar. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-7745</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmars.2023.1211993</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Marine Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>
<italic>Aspergillus niger</italic> confers health benefits and modulates the gut microbiota of juvenile Pacific white shrimp (<italic>Penaeus vannamei</italic>) under farming conditions</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Ming</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liang</surname>
<given-names>Huifen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lei</surname>
<given-names>Yifan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Yiwen</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tan</surname>
<given-names>Zhigang</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Wenzhen</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2330656"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Shengkang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/445361"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Peng</surname>
<given-names>Xianfeng</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1206621"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Tran</surname>
<given-names>Ngoc Tuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/460983"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Guangdong Provincial Key Laboratory of Marine Biology, Shantou University</institution>, <addr-line>Shantou</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Institute of Marine Sciences, Shantou University</institution>, <addr-line>Shantou</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Technical Service, Guangzhou Insighter Biotechnology Co., Ltd</institution>, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Yafei Duan, South China Sea Fisheries Research Institute, China</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Chongqing Wen, Guangdong Ocean University, China; Peng Fei Zou, Jimei University, China</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Ngoc Tuan Tran, <email xlink:href="mailto:tranntts@gmail.com">tranntts@gmail.com</email>; Xianfeng Peng, <email xlink:href="mailto:pengist@hotmail.com">pengist@hotmail.com</email>
</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>06</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1211993</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>04</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>05</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Zhang, Liang, Lei, Zhang, Tan, Chen, Li, Peng and Tran</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Zhang, Liang, Lei, Zhang, Tan, Chen, Li, Peng and Tran</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>The fungus <italic>Aspergillus niger</italic> is found to be predominant in the body of Pacific white shrimp (<italic>Penaeus vannamei</italic>); however, its role in shrimp&#x2019;s health has not been explored. This study aimed to evaluate the influences of A. niger on growth, antioxidative activity, immune response, and gut microbiota of juvenile Pacific white shrimps under farming conditions.</p>
</sec> <sec>
<title>Methods</title>
<p>Shrimps (2.30&#xb1;1.05 g) were fed diets supplemented with 0 (control), 1.5 (A1.5), or 3.0 g/kg diet of <italic>A. niger</italic> (A3.0) for one month. At the end of the study, the growth, antioxidant enzyme activity and immune parameters, and gut microbiota in shrimps fed with different experimental diets were analyzed.</p>
</sec>
<sec>
<title>Results</title>
<p>The results showed a significant increase in weight gain, specific growth rate, and length gain of shrimps in A1.5, compared with other groups (<italic>P</italic>&lt;0.05). With the exception of lysozyme in both A1.5 and A3.0, which were lower than in the control, the activity of superoxide dismutase (SOD), catalase, acid phosphatase, alkaline phosphatase, and phenol oxidase was higher than those in the control. Gene expressions of SOD, anti-lipopolysaccharide factor-ALF1, and ALF2 (in A1.5 and A3.0) and nitric oxide synthase, penaeidin-PEN2 (in A1.5) and PEN3 and PEN4 (in A3.0) were significantly up-regulated compared to the control (<italic>P</italic>&lt;0.05). The addition of <italic>A. niger</italic> increased diversity and separated the microbial community in the gut of shrimps. At the phylum level, Firmicutes and Bacteroidota were dominant, and Proteobacteria was less abundant in the A1.5 and A3.0, as compared to the control. At the genus level, the relative abundance of <italic>Vibrio, Marivita</italic>, and <italic>Roseobacter</italic> was increased but <italic>Ruegeria</italic> was decreased in A1.5 and A3.0 when compared to the control. The genera <italic>Edwardsiella, Clostridium sensu stricto 1</italic>, and <italic>Shimia</italic> in the A1.5 were higher than in the control.</p>
</sec> <sec>
<title>Discussion</title>
<p>These findings demonstrated the beneficial effects of <italic>A. niger</italic> on growth, health, and changes in the gut microbiota in shrimps under farming conditions. The recommended concentration of <italic>A. niger</italic> in the diet for shrimps is 1.5 g/kg diet.</p>
</sec>
</abstract>
<kwd-group>
<kwd>
<italic>Aspergillus niger</italic>
</kwd>
<kwd>
<italic>Penaeus vannamei</italic>
</kwd>
<kwd>growth</kwd>
<kwd>antioxidant activity</kwd>
<kwd>immune response</kwd>
<kwd>gut microbiota</kwd>
</kwd-group>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content>
</contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="63"/>
<page-count count="11"/>
<word-count count="5281"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Aquatic Physiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Aquaculture is one of the fastest-growing and largest food production sectors that play an important role in providing sustainable livelihood opportunities and food security for the world population (<xref ref-type="bibr" rid="B11">Dawood et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B48">Stentiford et&#xa0;al., 2020</xref>). The development of practice models that contributes to the outstanding growth of the aquaculture industry and promotes the increase in terms of production has been considered. Pacific white shrimp (<italic>Penaeus vannamei</italic>) is one of the most important marine aquaculture species globally, accounting for approximately 80% of the total annual production (<xref ref-type="bibr" rid="B61">Zheng et&#xa0;al., 2021b</xref>). Similar to the general situation of large-scale intensive aquaculture systems, the shrimp aquaculture industry faces to deteriorating farming environment and frequent disease outbreaks, which cause great economic loss (<xref ref-type="bibr" rid="B14">Deng et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B62">Zheng et&#xa0;al., 2021a</xref>). The developed methods of treatment that overcome growth performance and increase disease resistance of shrimps are needed (<xref ref-type="bibr" rid="B14">Deng et&#xa0;al., 2013</xref>). Several reports suggested that aquatic animals fed with a diet supplemented with prebiotics, probiotics, synbiotics, or postbiotics revealed an enhancement in growth performance, immune response, and disease resistance when compared to their non-added counterparts (<xref ref-type="bibr" rid="B21">Hai, 2015</xref>; <xref ref-type="bibr" rid="B22">Hoseinifar et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B41">Ring&#xf8;, 2020</xref>; <xref ref-type="bibr" rid="B52">Tran et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B51">Tran and Li, 2022</xref>). In crustaceans, probiotics bacteria, such as the members of <italic>Bacillus</italic>, <italic>Enterococcus</italic>, <italic>Lactobacillus</italic>, and <italic>Pediococcus</italic>, that showed improving growth and digestive enzyme activity, modulating gut microbiota, and enhancing immune response and hematological parameters have been widely investigated (<xref ref-type="bibr" rid="B41">Ring&#xf8;, 2020</xref>; <xref ref-type="bibr" rid="B51">Tran and Li, 2022</xref>). In Pacific white shrimp, for example, the mixed-species probiotics (<italic>Bacillus subtilis</italic>, <italic>Bacillus licheniformis</italic>, and <italic>Lactobacillus</italic> sp.) have shown benefits to their hosts, including enhancing growth and non-specific immunity, changing intestinal morphology, and modulating gut microbiota (<xref ref-type="bibr" rid="B58">Xie et&#xa0;al., 2019</xref>). Furthermore, the application of yeasts, yeast extract, and other fungal-origin compounds (such as &#x3b2;-glucan) showed beneficial effects on growth, antioxidant ability, immunity, disease resistance, and intestinal microbiota of Pacific white shrimp (<xref ref-type="bibr" rid="B36">Murthy et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B14">Deng et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B5">Boonanuntanasarn et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B35">Ma et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B3">Ayiku et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B62">Zheng et&#xa0;al., 2021a</xref>).</p>
<p>The fungus <italic>Aspergillus niger</italic> has been reported as one of the predominant species of the genus <italic>Aspergillus</italic> harboring the body of Pacific white shrimp (<xref ref-type="bibr" rid="B9">Cruz da Silva et&#xa0;al., 2011</xref>). Previous studies have shown that <italic>A. niger</italic> used for the fermentation of groundnut oil cake, soybean meal, sunflower oil cake, and plant protein mix can enhance growth, feed efficiency, and hemolymph indices in Pacific white shrimp (<xref ref-type="bibr" rid="B26">Jannathulla et&#xa0;al., 2018a</xref>; <xref ref-type="bibr" rid="B25">Jannathulla et&#xa0;al., 2018b</xref>; <xref ref-type="bibr" rid="B13">Dayal et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B24">Jannathulla and Dayal, 2022</xref>). Recently, in common carp (<italic>Cyprinus carpio</italic>), supplementing <italic>A. niger</italic> in the diet increased survival rate, growth performance, feed utilization, immune responses, hematological indexes, digestive enzyme activity, and the load of the fungi in the intestine (<xref ref-type="bibr" rid="B27">Jasim et&#xa0;al., 2022</xref>). Therefore, results of previous studies have proven the potential use of <italic>A. niger</italic> as a probiotic organism conferring health benefits to aquatic animals. However, the influence of <italic>A. niger</italic> as the dietary probiotic supplementation in Pacific white shrimps has not been investigated. This study aimed to evaluate the influences of <italic>A. niger</italic> (Insighter Co. Ltd., Guangzhou, Guangdong, China) on growth, oxidative activity, immune response, and gut microbiota of juvenile Pacific white shrimps under farming conditions. The results of this study provided basic information on the potential use of <italic>A. niger</italic> as a probiotic organism in shrimp aquaculture.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Shrimps, bacterial sources, and feeding trial</title>
<p>The study was conducted in a commercial shrimp farm in Lufeng, Shanwei, Guangdong Province, China (Latitude: 22&#xb0;50&#x2019;42.1&#x201d; N; Longitude: 116&#xb0;08&#x2019;11.0&#x201d; E). Healthy juvenile Pacific white shrimp (initial body weight: 2.30 &#xb1; 1.05&#xa0;g; initial body length: 7.11 &#xb1; 1.31&#xa0;cm) were cultured in earth ponds fulfilled with filtered aerated seawater (salinity 30&#x2030;, pH~8.0). The shrimps were reared in three ponds (pond area: 660 m<sup>2</sup>/pond; water depth: 1.8-2.0&#xa0;m; stocking density: 350,000 post-larvae/pond) with aerators operated 24/24. All shrimps were fed with a commercial pelleted feed (&#x2265;43% crude protein, &#x2264;15% crude ash, &#x2265;5.0% crude lipid, &#x2264;5.0% crude fiber, &#x2265;2.6% lysine, &#x2264;11% moisture, and 0.9-2.0% total phosphorus) (Fuzhou Haima Feed Co., Ltd., Fujian, China) four times per day. The culture water was exchanged twice daily.</p>
<p>The fungus <italic>A. niger</italic> (5&#xd7;10<sup>8</sup> CFU/g) was made by Insighter Co. Ltd. (Guangzhou, Guangdong, China). The commercial pelleted feed mentioned above was used as a basal diet. Three diets, including control (basal diet supplemented with PBS), A1.5 (basal diet supplemented with <italic>A. niger</italic> at 1.5 g/kg diet), and A3.0 (basal diet supplemented with <italic>A. niger</italic> at 3.0 g/kg diet), were used for the feeding. The concentrations of <italic>A. niger</italic> used in this study were followed by recommendations from the manufacturer. The fungal powder was first mixed into PBS, and the suspension was sprayed uniformly onto the feed and dried at room temperature for 30 minutes before use. Shrimps in each pond were fed four times daily with corresponding diets, and the diets supplemented with <italic>A. niger</italic> were applied twice a day (at 10:00 and 14:00). During the experimental period, the temperature was about 30&#xb0;C, pH was 7.5 to 8.5, salinity was about 30&#x2030;, and dissolved oxygen was higher than 5.5 mg/L. The water in culture ponds was exchanged eight times daily (water exchange rate about 5% each time). The feeding was conducted for one month.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Growth parameter analyses</title>
<p>At the beginning and end of the feeding trial (one month), 30 shrimps from each pond were collected and weighed to assess weight gain, specific growth rate, and length gain. The growth parameters were calculated as follows:</p>
<p>Weight gain rate (%) = [(Final body weight-Initial body weight)/Initial body weight]&#xd7;100%</p>
<p>Specific growth rate (%/day) = [(ln Final body weight &#x2013; ln Initial body weight)/t]&#xd7;100%</p>
<p>Length gain (%) = [(Final body length - Initial body length)/Initial body length]&#xd7;100%</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Antioxidant enzyme activity and immune parameter analyses</title>
<p>At the end of the feeding trial, 30 shrimps from each pond were collected. Shrimps were chilled on ice and then used for collecting hepatopancreas and intestine samples. The 10 pooled samples were immediately frozen in liquid nitrogen and stored at &#x2212;80&#xb0;C until further analysis. The hepatopancreas samples (n=3) were homogenized with 10-fold ice-cold phosphate buffer separately. The homogenate was centrifuged at 4&#xb0;C at 4000 &#xd7;<italic>g</italic> for 10&#xa0;min to collect the supernatant, which was then used for analyzing of enzyme activities. The activities of superoxide dismutase (SOD), catalase, phenol oxidase (PO), lysozyme, acid phosphatase (ACP), and alkaline phosphatase (AKP) were measured using kits of Nanjing Jiancheng Bioengineering Institute (Nanjing, China) according to the manufacturer&#x2019;s instructions.</p>
</sec>
<sec id="s2_4">
<label>2.4</label>
<title>RNA extraction, cDNA library synthesis, and gene expression quantification</title>
<p>Total RNA was extracted from the intestine of shrimps using TRIzol<sup>&#xae;</sup> Reagent (Ambion, USA), which was followed by synthesis of the first-strand cDNA with PrimeScript&#x2122; RT Reagent Kit (TaKaRa, Dalian, China) according to the manufacturer&#x2019;s instructions. RT-qPCR was performed with Premix Ex Taq (Probe qPCR) (TaKaRa, Dalian, China) to investigate the expression of SOD, nitric oxide synthase (NOS), prophenoloxidase (proPO), and antimicrobial peptides (AMPs, including crustin, anti-lipopolysaccharide factor-ALF1, ALF2, penaeidin-PEN2, PEN3, and PEN4) in the shrimp&#x2019;s intestine. Primers used for the amplification of mRNA transcripts was listed in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. The &#x3b2;-actin was used as the internal control. The RT-qPCR conditions were conducted at 95&#xb0;C for 30 s, followed by 40 cycles at 95&#xb0;C for 5 s and 60&#xb0;C for 20 s, and 72&#xb0;C for 15 s. The relative expression of genes was normalized to the &#x3b2;-actin gene expression, and calculated by the 2<sup>&#x2212;&#x394;&#x394;Ct</sup> method (<xref ref-type="bibr" rid="B34">Livak and Schmittgen, 2001</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Sequences of primers used in this study.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Gene</th>
<th valign="middle" align="center">Primer</th>
<th valign="middle" align="center">Sequence (5&#x2019;-3&#x2019;)</th>
<th valign="top" align="center">Reference/GenBank</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Nitric oxide synthase</td>
<td valign="top" align="left">NOS-F</td>
<td valign="top" align="left">GAGCAAGTTATTCGGCAAGGC</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B62">Zheng (2021)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">NOS-R</td>
<td valign="top" align="left">TCTCTCCCAGTTTCTTGGCGT</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Prophenoloxidase</td>
<td valign="top" align="left">proPO-F</td>
<td valign="top" align="left">CGGTGACAAAGTTCCTCTTC</td>
<td valign="top" align="left">AY723396.1</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">proPO-R</td>
<td valign="top" align="left">GCAGGTCGCCGTAGTAAG</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Superoxide dismutase</td>
<td valign="top" align="left">SOD-F</td>
<td valign="top" align="left">TCATGCTTTGCCACCTCTC</td>
<td valign="top" align="left">DQ029053.1</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">SOD-R</td>
<td valign="top" align="left">CCGCTTCAACCAACTTCTTC</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Crustin</td>
<td valign="top" align="left">Crustin-F</td>
<td valign="top" align="left">GGAGGGTCAAGCCTACTGC</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B59">Zhang et&#xa0;al. (2019b)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Crustin-R</td>
<td valign="top" align="left">ACGTGGGCATGTGGGAC</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Anti-lipopolysaccharide factor-1</td>
<td valign="top" align="left">ALF1-F</td>
<td valign="top" align="left">GGATGTGGTGTCCTGGATGG</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B59">Zhang et&#xa0;al. (2019b)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">ALF1-R</td>
<td valign="top" align="left">GCGTCGTCCTCCGTGATG</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Anti-lipopolysaccharide factor-2</td>
<td valign="top" align="left">ALF2-F</td>
<td valign="top" align="left">GCGAACAAACTCACTGGACTG</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B59">Zhang et&#xa0;al. (2019b)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">ALF2-R</td>
<td valign="top" align="left">ACATGCGACCCTGGAATACAG</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Penaeidin-2</td>
<td valign="top" align="left">PEN2-F</td>
<td valign="top" align="left">GCATCAAGTTCGGAAGCTGT</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B56">Wang et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">PEN2-R</td>
<td valign="top" align="left">ACCCACATCCTTTCCACAAG</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Penaeidin-3</td>
<td valign="top" align="left">PEN3-F</td>
<td valign="top" align="left">CTCTGGCTTGTGGAATGGAT</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B56">Wang et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">PEN3-R</td>
<td valign="top" align="left">GCATGGATTCACTTCCTCGT</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">Penaeidin-4</td>
<td valign="top" align="left">PEN4-F</td>
<td valign="top" align="left">ATGCTACGGAATTCCCTCCT</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B56">Wang et&#xa0;al. (2013)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">PEN4-R</td>
<td valign="top" align="left">ATCCTTGCAACGCATAGACC</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">&#x3b2;-actin</td>
<td valign="top" align="left">&#x3b2;-actin-F</td>
<td valign="top" align="left">GAAGTAGCCGCCCTGGTTGT</td>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B59">Zhang et&#xa0;al. (2019b)</xref>
</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">&#x3b2;-actin-R</td>
<td valign="top" align="left">GGATACCTCGCTTGCTCTGG</td>
<td valign="top" align="left"/>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2_5">
<label>2.5</label>
<title>Intestinal microbiota analysis</title>
<p>The gut contents collected from 30 individuals in each experimental group were used for analyzing changes in the gut microbiota of shrimps fed with <italic>A. niger</italic>-containing diets as compared to the control. Gut contents from 10 shrimps were pooled for each biological replicate, and the pooled samples were used for DNA extraction using TIANamp Genomic DNA Kit (Tiangen Biotech Co., Ltd., Beijing, China) according to the manufacturer&#x2019;s instructions. The extracted DNA was used as the template for amplifying the V3-V4 hypervariable region of 16S rRNA using universal primers 341F/806R with the barcode. PCR reactions (30 &#xb5;L) contained 10 ng of DNA, 15 &#xb5;L of Phusion R High-Fidelity PCR Master Mix with GC buffer (New England Biolabs, Ipswich, MA, USA), 0.2 &#xb5;M of forward and reverse primers, and 2 &#xb5;L of distilled water. The PCR program included an initial denaturation (at 98&#xb0;C) for 1&#xa0;min, 30 cycles of 98&#xb0;C for 10 s, 56&#xb0;C for 30 s, and 72&#xb0;C for 30 s, and a final elongation step (at 72&#xb0;C) for 5&#xa0;min. PCR products were purified using DNA Gel Extraction Kit (Axygen, Hangzhou, China). Purified PCR products were used for synthesizing sequencing libraries and the libraries were sequenced using Illumina-based high-throughput sequencing (Illumina NovaSeq6000).</p>
<p>The unique barcode was used for assigning single-end reads to each sample. Reads were analyzed with the UCHIME algorithm (<xref ref-type="bibr" rid="B19">Edgar et&#xa0;al., 2011</xref>) and the reads were assigned to operational taxonomic units (OTUs) based on a similarity cutoff of 97% using UPARSE software (Version 7.0.1001) (<xref ref-type="bibr" rid="B18">Edgar, 2013</xref>). Representative sequences from each OTU were classified using the SILVA reference database (confidence threshold of 80%). The alpha and beta diversity parameters were analyzed using QIIME (Version 1.7.0) (<xref ref-type="bibr" rid="B6">Caporaso et&#xa0;al., 2010</xref>). Principal coordinates analysis (PCoA) used to visualize the Jaccard distances among samples was analyzed using VEGAN (<xref ref-type="bibr" rid="B15">Dixon, 2003</xref>). Raw sequencing reads have been deposited in GenBank under BioProject code PRJNA900677.</p>
</sec>
<sec id="s2_6">
<label>2.6</label>
<title>Data analyses</title>
<p>All data are shown as mean &#xb1; Std. Differences between groups were analyzed using an Independent-sample <italic>t</italic>-test on SPSS 16.0 (IBM Corporation, Armonk, NY, USA). Statistically significant differences were considered at <italic>P&lt;0.05</italic>.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Growth parameters</title>
<p>The growth performance of shrimps fed diets supplemented with or without <italic>A. niger</italic> is shown in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>. Results showed that the weight gain, specific growth rate, and length gain of shrimps in the A1.5 were significantly higher than those in the A3.0 and control (<italic>P&lt;0.05</italic>). The obtained data indicated that the supplementation of <italic>A. niger</italic> (at 1.5 g/kg diet) can improve the growth of shrimps under culture conditions.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Growth parameters (as shown by weight grain <bold>(A)</bold>, specific growth rate <bold>(B)</bold> and length gain <bold>(C)</bold>) of Pacific white shrimp fed diets supplemented with different <italic>Aspergillus niger</italic> concentrations for one month. Values are expressed as means &#xb1; Std from 30 shrimps in each group. Different superscript letters indicate significant differences among experimental groups (<italic>P&lt;0.05</italic>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1211993-g001.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Antioxidant enzyme activity and immune response</title>
<p>The activity of antioxidant enzymes and immune responses of shrimps fed with different experimental diets are shown in <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>. The activities of SOD and catalase in shrimps in A1.5 and A3.0 were significantly higher than those of the control (<italic>P&lt;0.05</italic>), with the highest activity in the A3.0. The lysozyme activity was significantly decreased in A1.5 and A3.0 as compared to the control (<italic>P&lt;0.05</italic>). The activities of ACP and AKP in <italic>A. niger</italic>-fed shrimps were significantly higher than that in controls (<italic>P&lt;0.05</italic>), with the exception of ACP in the A3.0, which was not significantly different from the control (<italic>P&gt;0.05</italic>). The activity of PO of shrimps in A1.5 and A3.0 was significantly higher than in the control (<italic>P&lt;0.05</italic>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Activity of the enzymes (superoxide dismutase (SOD) <bold>(A)</bold>, catalase <bold>(B)</bold>, lysozyme <bold>(C)</bold>, acid phosphatase (ACP) <bold>(D)</bold>, alkaline phosphatase (AKP) <bold>(E)</bold>, and phenol oxidase (PO) <bold>(F)</bold>) in the hepatopancreas of Pacific white shrimp fed diets supplemented with different <italic>Aspergillus niger</italic> concentrations for one month. Values are expressed as means &#xb1; Std from three samples. Different superscript letters indicate significant differences among experimental groups (<italic>P&lt;0.05</italic>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1211993-g002.tif"/>
</fig>
<p>The expressions of NOS, SOD, crustin, ALF1, ALF2, PEN2, PEN3, PEN4, and proPO genes in the intestine of shrimps fed different diets were assessed using the RT-qPCR (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Results revealed that the expression of SOD was significantly increased in A1.5 and A3.0; whereas those of NOS was significantly increased in the A3.0 only as compared to the control (<italic>P&lt;0.05</italic>). Crustin gene expression in shrimps in A1.5 and A3.0 was significantly lower than in the control (<italic>P&lt;0.05</italic>). Shrimps in A1.5 and A3.0 had significantly higher ALF1 and ALF2 gene expression when compared to their counterparts in the control (<italic>P&lt;0.05</italic>). The significantly increased expression of PEN2 was only found in shrimps in the A1.5 and PEN3 and PEN4 were only in the A3.0 as compared to the control (<italic>P&lt;0.05</italic>). There was an increase in the expression of proPO in the intestine of shrimps fed <italic>A. niger</italic>-containing diets but did not significantly differ from that of the controls (<italic>P&gt;0.05</italic>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Relative mRNA expressions of genes (superoxide dismutase (SOD) <bold>(A)</bold>, nitric oxide synthase (NOS) <bold>(B)</bold>, crustin <bold>(C)</bold>, anti-lipopolysaccharide factor (ALF)-1 <bold>(D)</bold>, ALF-2 <bold>(E)</bold>, Penaeidin(PEN)-2 <bold>(F)</bold>, PEN3 <bold>(G)</bold>, PEN4 <bold>(H)</bold>, and prophenoloxidase (proPO) <bold>(I)</bold>) (as analyzed by RT-qPCR) in the intestine of Pacific white shrimp fed diets supplemented with different Aspergillus niger concentrations for one month. The values are expressed as means &#xb1; Std from three samples. Different superscript letters indicate significant differences among experimental groups (P&lt;0.05).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1211993-g003.tif"/>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Gut microbiota analysis</title>
<p>Microbial alpha diversity in samples was evaluated based on the Shannon and Simpson indexes, and results showed a significant increase in the microbial diversity (as calculated by Shannon and Simpson indexes) in both A1.5 and A3.0 over the control (<italic>P&lt;0.05</italic>) (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A, B</bold>
</xref>). The PCoA analysis revealed a distinct separation in the microbial community among the experimental groups (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). The findings suggest changes in gut microbiota of shrimps after feeding with <italic>A. niger</italic>-containing diets.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Modulation of gut microbiota of Pacific white shrimp fed diets supplemented with different <italic>Aspergillus niger</italic> concentrations for one month. <bold>(A)</bold> and <bold>(B)</bold> Alpha diversity indices. <bold>(C)</bold> Principal coordinates analysis (PCoA) (PCoA1: 62.02% and PCoA2: 26.46% of the explained variance). <bold>(D)</bold> Predominant phyla and <bold>(E)</bold> genera of microbiota in the intestine. <bold>(F)</bold> Linear discriminant analysis effect size (LEfSe) (LDA&gt;4, <italic>P&lt;0.05</italic>). Values are expressed as means &#xb1; Std from three samples. Different superscript letters indicate significant differences among experimental groups (<italic>P&lt;0.05</italic>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fmars-10-1211993-g004.tif"/>
</fig>
<p>Differences in the major taxonomical profiles of the gut microbiota in the shrimps fed with <italic>A. niger</italic>-containing diets and the controls were analyzed. The top 10 phyla are illustrated in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>. Relative abundance of the phylum Proteobacteria in the A1.5 (87.45 &#xb1; 4.46%, t=2.41, <italic>P=0.13</italic>), A3.0 (89.43 &#xb1; 1.86%, t=3.59, <italic>P=0.02</italic>) were lower than that in the control (93.8 &#xb1; 0.99%). In contrast, the abundance of Firmicutes was enriched in the A1.5 (7.4 &#xb1; 1.84%, t=-4.48, <italic>P=0.01</italic>) and A3.0 (7.4 &#xb1; 1.25%, t=-6.46, <italic>P=0.00</italic>) as compared to the control (2.55 &#xb1; 0.37%). A higher relative abundance of Bacteroidota was observed in the A1.5 (t=-1.24, <italic>P=0.34</italic>) and A3.0 (t=2.01, <italic>P=0.12</italic>) in comparison to the control group. At the genus level, results showed that several bacterial genera shifted their relative abundance in the gut of shrimps after feeding with <italic>A. niger</italic>-containing diets. The most abundant genera are shown in <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4E</bold>
</xref>. There was a significant increase in the relative abundance of the genera <italic>Vibrio</italic> (t=-30.0, <italic>P=0.00</italic>, and t=-3.64, <italic>P=0.07</italic>), <italic>Marivita</italic> (t=-6.03, <italic>P=0.00</italic>, and t=-7.49, <italic>P=0.02</italic>), and <italic>Roseobacter</italic> (t=-5.49, <italic>P=0.03</italic>, and t=-2.36, <italic>P=0.08</italic>) in A1.5 and A3.0, respectively, when compared to the control. However, the relative abundance of <italic>Ruegeria</italic> was decreased in the A1.5 (t=5.99, <italic>P=0.03</italic>) and A3.0 (t=17.26, <italic>P=0.00</italic>) as compared to the control. The genera <italic>Edwardsiella</italic> (t=-5.93, <italic>P=0.00</italic>), <italic>Clostridium sensu stricto 1</italic> (t=-5.87, <italic>P=0.03</italic>), and <italic>Shimia</italic> (t=-25.63, <italic>P=0.00</italic>) were significantly increased in the A1.5 as compared with such in the control.</p>
<p>The LEfSe analysis (LDA&gt;4.0, <italic>P&lt;0.05</italic>) identified the bacterial taxa related to the experimental groups (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4F</bold>
</xref>). The results revealed that the taxa Clostridia, Lachnospiraceae, Lachnospirales, and <italic>Marivita</italic> were enriched in the A3.0 group, whereas, Erysipelotrichales, Erysipelotrichaceae, Enterobacterales, Hafniaceae, <italic>Roseobacter</italic>, ZOR0006, <italic>Spongiimonas</italic>, and <italic>Edwardsiella</italic> were predominant in the A1.5, as well as, Cellvibrionales, Halieaceae, Psychromonadaceae, <italic>Ruegeria</italic>, <italic>Motilimonas</italic>, were in the control.</p>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<p>
<xref ref-type="bibr" rid="B45">Sharma et&#xa0;al. (2022)</xref> indicated that <italic>A. niger</italic> is a potential probiotic, which can increase egg production and quality, and decrease the cecal microbial load of pathogenic bacteria (such as <italic>Clostridium perfringens</italic>, <italic>Salmonella</italic> spp., and <italic>Escherichia coli</italic>) in laying hens. In aquaculture, <italic>A. niger</italic> has been demonstrated to be a potential probiotic that confers health benefits on common carp (including the enhancement of growth performance, immunity, hematology, the load of the gut fungi, and digestive enzymes) (<xref ref-type="bibr" rid="B27">Jasim et&#xa0;al., 2022</xref>). However, the probiotic potential of <italic>A. niger</italic> on shrimp has not been evaluated yet. In this study, the effects of <italic>A. niger</italic> on growth performance, antioxidative activity, immune response, and changes in the gut microbiota of juvenile Pacific white shrimp under farming conditions were investigated for the first time. Results showed that the inclusion of <italic>A. niger</italic> can enhance the weight gain, specific growth rate, and length gain of shrimps, especially in the A1.5, indicating the growth promotion of <italic>A. niger</italic> (at 1.5 g/kg diet) shrimps under culture conditions. This similar to the previous findings in common carp fed a diet supplemented with <italic>A. niger</italic> (at 1&#xd7;10<sup>3</sup> or 1&#xd7;10<sup>6</sup> CFU/g diet) (<xref ref-type="bibr" rid="B27">Jasim et&#xa0;al., 2022</xref>). <xref ref-type="bibr" rid="B27">Jasim et&#xa0;al. (2022)</xref> showed an improvement in the final length and weight, weight gain, thermal growth coefficient, protein efficiency ratio, lipid efficiency ratio, feed conversion ratio, immune response, and activity of digestive enzymes of fish fed with diets supplemented with <italic>A. niger</italic>. Also, in another study, supplementation of <italic>Aspergillus oryzae</italic> singly or in combination with &#x3b2;-glucan can increase the growth, feed efficiency, antioxidant status, and immunomodulation of Nile tilapia (<xref ref-type="bibr" rid="B10">Dawood et&#xa0;al., 2020</xref>). The improvement in the growth of fish by <italic>A. niger</italic> supplementation has been discussed to relate to the positive benefits on feed digestibility, activity of digestive enzymes (protease, amylase, lipase, alkaline phosphatase, and trypsin), and feed absorbance efficiency with an increase in the absorptive area, microvilli density and height (<xref ref-type="bibr" rid="B10">Dawood et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B27">Jasim et&#xa0;al., 2022</xref>). Our study observed that <italic>A. niger</italic> added to the diet of shrimps (at 1.5 g/kg diet, A1.5) showed the best effectiveness in the growth performance of shrimps; however, the mechanisms of action were lacking, which merits further investigations. Collectively, the outcomes of this current study indicate that the low dose of <italic>A. niger</italic> (1.5 g/kg diet) is more suitable for use in shrimp aquaculture.</p>
<p>The antioxidant system plays an important role in the physiological response of hosts in responding to effects of noninfectious or infectious agents. SOD and catalase are the main components in the antioxidant system that protects hosts against oxidative stress, specific to the overproduction and residuals of reactive oxygen species during inflammatory responses (<xref ref-type="bibr" rid="B39">Parrilla-Taylor et&#xa0;al., 2013</xref>). Our results revealed that the activities of SOD and catalase of shrimps were increased in A1.5 and A3.0 as compared to the control, indicating that <italic>A. niger</italic>-containing diets can enhance the antioxidant capacity in juvenile Pacific white shrimp. Moreover, NOS, which is one of the oxidation-derived compounds, has been proven to have antimicrobial effects on the innate immunity of crustaceans (<xref ref-type="bibr" rid="B32">Li et&#xa0;al., 2012b</xref>). The result herein showed the increased expression of the NOS gene in shrimps fed the <italic>A. niger</italic>-containing diet (A3.0), suggesting the stimulation of the probiotic to the induction of NOS. A similar observation was found in mouse macrophagocytes that showed the expression of inducible NOS after being treated with &#x3b2;-glucan derived from <italic>Aureobasidum pullans</italic> SM-2001 (<xref ref-type="bibr" rid="B8">Choi et&#xa0;al., 2016</xref>). Thus, it is speculated that <italic>A. niger</italic> can activate the non-specific defense of shrimps by stimulating NOS production.</p>
<p>Lysozyme activity is important in innate immunity, which is responsible for attacking and causing damage to the cell structures of invading bacteria (<xref ref-type="bibr" rid="B43">Saurabh and Sahoo, 2008</xref>). The lysozyme activity was found to increase in Nile tilapia (<italic>Oreochromis niloticus</italic>) fed with probiotic-or synbiotic-supplemented diets (<xref ref-type="bibr" rid="B47">S&#xee;rbu et&#xa0;al., 2022</xref>), Chinese drum (<italic>Miichthys miiuy</italic>) fed with live or dead cells of <italic>Clostridium butyrium</italic> CB2-supplemented diets (<xref ref-type="bibr" rid="B37">Pan et&#xa0;al., 2008</xref>), and red sea bream (<italic>Pagrus major</italic>) fed with &#x3b2;-glucan-supplemented diets (<xref ref-type="bibr" rid="B12">Dawood et&#xa0;al., 2017</xref>) but to remain unchanged in grouper (<italic>Epinephelus coioides</italic>) fed with <italic>Bacillus pumilus</italic> or <italic>B. clausii</italic> (<xref ref-type="bibr" rid="B49">Sun et&#xa0;al., 2010</xref>). However, our findings found that dietary <italic>A. niger</italic> supplement significantly decreased the lysozyme activity in shrimps, referring to that the probiotic showed negative effects on the activity of lysozyme in the innate immunity of shrimps. Differences in results among studies may be due to differences in probiotic organisms, dosage, host species, experimental designs, and nutritional and environmental factors. Furthermore, acid phosphatase (ACP) and alkaline phosphatase (AKP) are important in the immune system of crustaceans, where the former is responsible for digesting invading pathogens and the latter is for detoxifying during the normal living and phagolysis and digesting and absorbing nutrients (<xref ref-type="bibr" rid="B58">Xie et&#xa0;al., 2019</xref>). The findings herein showed an increase in activities of ACP and AKP in the shrimps fed <italic>A. niger</italic>-containing diets. Similar results were observed in the Pacific white shrimp fed with a probiotic mixture (<xref ref-type="bibr" rid="B58">Xie et&#xa0;al., 2019</xref>) and ridgetail white prawn (<italic>Exopalaemon carinicauda</italic>) fed with <italic>Psychrobacter</italic> sp. B6 (<xref ref-type="bibr" rid="B28">Lai et&#xa0;al., 2022</xref>).</p>
<p>Antimicrobial peptides (AMPs) contribute to the innate immune system as the first line of defense against invading pathogens. The current study found that crustin, which showed antibacterial activity against Gram-positive and Gram-negative bacteria, and virus (<xref ref-type="bibr" rid="B16">Du et&#xa0;al., 2019</xref>), was down-regulated in the shrimps fed with <italic>A. niger</italic>. This is consistent with findings of the giant tiger shrimp crustin-like, which was down-regulated in the <italic>Candida haemulonii</italic> S27-fed shrimps, and then up-regulated in these animals after challenge with WSSV (<xref ref-type="bibr" rid="B2">Antony et&#xa0;al., 2011</xref>). Furthermore, ALFs and PENs are important in the immune defense of shrimps, showing broad-spectrum antimicrobial activities against bacteria, fungi, parasites, and viruses (<xref ref-type="bibr" rid="B20">Gu et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B57">Wu et&#xa0;al., 2019</xref>). The increase of gene expression of ALF1, ALF2, PEN2, PEN3, and PEN4 in shrimps fed with <italic>A. niger</italic>-containing diets suggested that the probiotic can promote the production of these AMPs and confer health benefits on shrimps. Therefore, our results indicated the role of <italic>A. niger</italic> in improving the immune response of shrimps.</p>
<p>In crustaceans, the proPO system, which is activated by the pattern recognition receptor family (e.g., &#x3b2;-1, 3-glucanase related protein), is vital in the humoral immune response. The binding of &#x3b2;-1, 3-glucan to these proteins activates the immune signaling pathway and enhances the PO activity (<xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2019</xref>). Herein, the increase of proPO mRNA expression and PO activity in shrimp fed with <italic>A. niger</italic>-containing diets suggests interactions between <italic>A. niger</italic> and the proPO system regulation in promoting shrimp humoral immune response. A similar finding was previously reported in black tiger shrimp where &#x3b2;-glucan participates in the activation of the proPO system and increase of PO activity, resulting in the protection of hosts against WSSV (<xref ref-type="bibr" rid="B7">Chang et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B50">Thitamadee et&#xa0;al., 2014</xref>). Collectively, dietary <italic>A. niger</italic> supplement shows an effectiveness in stimulating immune responses in shrimps, which may help hosts in resisting invading pathogens during the culture period.</p>
<p>Gut microbiota is important in dietary polysaccharide digestion, nutrient absorption, physiological homeostasis, and immune stimulation in their hosts. The gut microbiota in aquatic animals has been known to be affected by several factors, such as host species, nutrient supplementation, aquatic environment, and geolocation (<xref ref-type="bibr" rid="B53">Tran et&#xa0;al., 2017</xref>). In this study, the supplementation of <italic>A. niger</italic> significantly increased the alpha diversity and distinctly separated the microbial community structure in shrimps, referring to the great contribution of probiotics in shaping the gut microbiota of shrimps. This is in agreement with the previous findings in Pacific white shrimps fed with the probiotic mixture of <italic>B. subtilis</italic>, <italic>B. licheniformis</italic>, and <italic>Lactobacillus</italic> sp. (<xref ref-type="bibr" rid="B58">Xie et&#xa0;al., 2019</xref>). However, different results were observed in another study which found a decrease in the richness and diversity, but unchanged relative abundance (at the phylum level) of gut microbiota in Pacific white shrimps fed with &#x3b2;-glucan (<xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2019</xref>). The difference herein may be explained by the difference in water salinity used for the culture of experimental animals between the studies. Our results found that the bacterial phyla Proteobacteria, Firmicutes, Bacteroidota, Verrucomicrobiota, Actinobacteriota, and Cyanobacteria are the core bacteria in the gut of shrimp, which is similar to the previous findings (<xref ref-type="bibr" rid="B17">Duan et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2019</xref>). Bacteroidetes and Firmicutes are responsible for the metabolism of undigested food remnants (<xref ref-type="bibr" rid="B54">Tran et&#xa0;al., 2018a</xref>). The members of Bacteroidetes are known as producers of short-chain fatty acids (especially propionate) during the anaerobic fermentation, which has been demonstrated to confer health benefits on their hosts (<xref ref-type="bibr" rid="B42">Rios-Covian et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B52">Tran et&#xa0;al., 2020</xref>). The abundance of Firmicutes gives a good parameter concerning the health status of the gut, of which many members, such as Lachnospiraceae, <italic>Clostridium</italic>, <italic>Bacillus</italic>, <italic>Lachmoclostridium</italic>, and <italic>Lactobacillus</italic>, are beneficial bacteria (<xref ref-type="bibr" rid="B17">Duan et&#xa0;al., 2018</xref>). Among them, the members of the family Lachnospiraceae are capable of producing butyrate <italic>via the</italic> butyryl-CoA or acetate CoA transferase pathways or the butyrate kinase pathway by using lactate and acetate (<xref ref-type="bibr" rid="B60">Zhang et&#xa0;al., 2019a</xref>). Our findings showed that the abundance of members of Lachnospiraceae was increased in both A1.5 and A3.0 as compared to that in the control (data not shown), indicating the positive effects of the <italic>A. niger</italic> supplementation on the gut health of shrimps. Proteobacteria is related to energy disequilibrium and unstable gut microbiota (<xref ref-type="bibr" rid="B46">Shin et&#xa0;al., 2015</xref>), which was enriched in grass carp (<italic>Ctenopharyngodon idellus</italic>) with intestinal disease (<xref ref-type="bibr" rid="B55">Tran et&#xa0;al., 2018b</xref>) and humans with Crohn&#x2019;s disease and inflammatory bowel disease (<xref ref-type="bibr" rid="B29">Li et&#xa0;al., 2012a</xref>; <xref ref-type="bibr" rid="B63">Zhu et&#xa0;al., 2014</xref>). Our results showed that the relative abundance of Firmicutes and Bacteroidota was increased, but such of Proteobacteria was decreased in the shrimps fed <italic>A. niger</italic>-supplemented diets. Several bacterial genera, such as <italic>Vibrio</italic>, <italic>Marivita</italic>, ZOR0006, <italic>Roseobacter</italic>, <italic>Ruegeria</italic>, <italic>Psychromonadaceae</italic>, <italic>Edwardsiella</italic>, <italic>Clostridium sensu stricto 1</italic>, <italic>Halioglobus</italic>, and <italic>Shimia</italic>, were predominated in the gut of shrimps. Of these genera, <italic>Vibrio</italic>, <italic>Marivita</italic>, and <italic>Roseobacter</italic> were found to be increased in the <italic>A. niger</italic>-fed shrimps, which is almost consistent with the previous findings (<xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B33">Liao et&#xa0;al., 2022</xref>). <italic>Roseobacter</italic> 27-4 is a probiotic bacterium for protecting turbot (<italic>Scophthalmus maximus</italic>) larvae against <italic>Vibrio anguillarum</italic> (<xref ref-type="bibr" rid="B40">Planas et&#xa0;al., 2006</xref>). <italic>Vibrio</italic> and <italic>Edwardsiella</italic> are known as opportunistic pathogens causing diseases in both cultured and wild aquatic animals (<xref ref-type="bibr" rid="B38">Park et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B30">Li et&#xa0;al., 2018</xref>). <italic>Vibrio</italic> spp. may cause an outbreak of vibriosis in cultured shrimps under the deterioration of the environment, but the pathogenic effect of <italic>Vibrio</italic> spp. is species-specific (<xref ref-type="bibr" rid="B23">Intaraprasong et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B31">Li et&#xa0;al., 2019</xref>). <xref ref-type="bibr" rid="B23">Intaraprasong et&#xa0;al. (2009)</xref> found that the extracellular products of <italic>Vibrio harveyi</italic> cause high toxicity to black tiger shrimp (<italic>P. monodon</italic>) but not Pacific white shrimp. Also, the previous study has demonstrated that the susceptibility of Pacific white shrimp is depended on the <italic>Vibrio</italic> species and doses (<xref ref-type="bibr" rid="B1">Aguirre-Guzm&#xe1;n et&#xa0;al., 2001</xref>). The study showed that <italic>V. alginolyticus</italic> showed a high survival of shrimp larvae, while <italic>V. harveyi</italic> and <italic>V. parahaemolyticus</italic> induced high mortality only at high doses (10<sup>5</sup> and 10<sup>7</sup> cfu/mL), and <italic>V. penaeicida</italic> caused high mortality and only at low dose (10<sup>3</sup> cfu/mL) in postlarvae 1 (<xref ref-type="bibr" rid="B1">Aguirre-Guzm&#xe1;n et&#xa0;al., 2001</xref>). An increase in the abundance of <italic>Vibrio</italic> in shrimps fed <italic>A. niger</italic> (in the A1.5 and A3.0) may speculate that these microorganisms are non-pathogenic species causing infections in shrimps. Also, the overgrowth of <italic>Vibrio</italic> spp. in <italic>A. niger</italic>-fed shrimps may indicate their beneficial role to the host. This is supported by the findings that <italic>Vibrio alginolyticus</italic> UTM 102 can enhance feed utilization and disease resistance against <italic>V. parahaemolyticus</italic> in Pacific white shrimp (<xref ref-type="bibr" rid="B4">Balc&#xe1;zar et&#xa0;al., 2007</xref>). Similarly, <italic>Edwardsiella</italic> sp. 34HN showed an effectiveness in promoting growth, immunity, and expression of myostatin and pituitary adenylate cyclase-activating polypeptide in African catfish (<italic>Clarias gariepinus</italic>) (<xref ref-type="bibr" rid="B44">Selim et&#xa0;al., 2019</xref>). Thus, <italic>A. niger</italic> can promote beneficial bacteria and inhibit opportunistic pathogens colonizing the gut of shrimps. Similar findings were observed in Pacific white shrimps fed with beer yeast and yeast extract (<xref ref-type="bibr" rid="B62">Zheng et&#xa0;al., 2021a</xref>).</p>
</sec>
<sec id="s5" sec-type="conclusions">
<label>5</label>
<title>Conclusions</title>
<p>This study proved the beneficial effects of <italic>A. niger</italic> in promoting weight gain, specific growth rate, and length gain, as well as, improving antioxidant activity and immune response of juvenile Pacific white shrimps. Also, the addition of <italic>A. niger</italic> can promote the selective growth of gut microbiota (with an increase in the abundance of beneficial bacteria and a decrease in that of opportunistic pathogens). Therefore, <italic>A. niger</italic> can be used as a probiotic in shrimp aquaculture. Based on growth promotion, the recommended supplementation of <italic>A. niger</italic> is a 1.5 g/kg diet. However, the limitation of this study is lacking an evaluation of the germination ability of fungal conidia in the gut of shrimps. Also, whether the positive impact of <italic>A. niger</italic> on shrimp health status is through the composition of fungal conidia or through the mycelium after germination and colonization of shrimp gut need to be further evaluated in the future.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/">https://www.ncbi.nlm.nih.gov/</ext-link>, PRJNA900677.</p>
</sec>
<sec id="s7" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The animals were processed according to &#x201c;the Regulations for the Administration of Affairs Concerning Experimental Animals&#x201d; established by Guangdong Provincial Department of Science and Technology on the Use and Care of Animals, and the experiments were approved by the Institutional Animal Care and Use Committee of Shantou University.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>MZ and HL: Investigation, Data curation. YL, YZ, ZT and WC: Data curation. SL and XP: Conceptualization, Project administration, Funding acquisition, Writing- review and editing. NT: Conceptualization, Investigation, Writing- original draft, review and editing. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by grants from National Natural Science Foundation of China (42076125, 41876152, 31850410487), STU Scientific Research Foundation for Talents (NTF21027), Guangdong Provincial Project of Science and Technology (2017B020204003), and Guangdong Provincial Special Fund for Modern Agriculture Industry Technology Innovation Teams (2019KJ141).</p>
</sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>Authors ZT, WC and XP were employed by Guangzhou Insighter Biotechnology Co., Ltd. Guangzhou, China.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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