AUTHOR=Xiong Dan , Song Li , Tao Jing , Zheng Huijuan , Zhou Zihao , Geng Shizhong , Pan Zhiming , Jiao Xinan 

TITLE=An Efficient Multiplex PCR-Based Assay as a Novel Tool for Accurate Inter-Serovar Discrimination of Salmonella Enteritidis, S. Pullorum/Gallinarum and S. Dublin

JOURNAL=Frontiers in Microbiology

VOLUME=8

YEAR=2017

URL=https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2017.00420

DOI=10.3389/fmicb.2017.00420

ISSN=1664-302X

ABSTRACT=<p><italic>Salmonella enterica</italic> serovars Enteritidis, Pullorum/Gallinarum, and Dublin are infectious pathogens causing serious problems for pig, chicken, and cattle production, respectively. Traditional serotyping for <italic>Salmonella</italic> is costly and labor-intensive. Here, we established a rapid multiplex PCR method to simultaneously identify three prevalent <italic>Salmonella</italic> serovars Enteritidis, Pullorum/Gallinarum, and Dublin individually for the first time. The multiplex PCR-based assay focuses on three genes <italic>tcpS, lygD</italic>, and <italic>flhB</italic>. Gene <italic>tcpS</italic> exists only in the three <italic>Salmonella</italic> serovars, and <italic>lygD</italic> exists only in <italic>S</italic>. Enteritidis, while a truncated region of <italic>flhB</italic> gene is only found in <italic>S</italic>. Pullorum/Gallinarum. The sensitivity and specificity of the multiplex PCR assay using three pairs of specific primers for these genes were evaluated. The results showed that this multiplex PCR method could accurately identify <italic>Salmonella</italic> Enteritidis, Pullorum/Gallinarum, and Dublin from eight non-<italic>Salmonella</italic> species and 27 <italic>Salmonella</italic> serovars. The least concentration of genomic DNA that could be detected was 58.5 pg/μL and the least number of cells was 100 CFU. Subsequently, this developed method was used to analyze clinical <italic>Salmonella</italic> isolates from one pig farm, one chicken farm, and one cattle farm. The results showed that blinded PCR testing of <italic>Salmonella</italic> isolates from the three farms were in concordance with the traditional serotyping tests, indicating the newly developed multiplex PCR system could be used as a novel tool to accurately distinguish the three specific <italic>Salmonella</italic> serovars individually, which is useful, especially in high-throughput screening.</p>