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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id>
<journal-title>Frontiers in Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">1664-302X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fmicb.2020.01294</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Co-occurrence of Antibiotic and Heavy Metal Resistance and Sequence Type Diversity of <italic>Vibrio parahaemolyticus</italic> Isolated From <italic>Penaeus vannamei</italic> at Freshwater Farms, Seawater Farms, and Markets in Zhejiang Province, China</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Jiang</surname> <given-names>Han</given-names></name>
<uri xlink:href="http://loop.frontiersin.org/people/680295/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Yu</surname> <given-names>Ting</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Yang</surname> <given-names>Yuting</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Yu</surname> <given-names>Shengtao</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Wu</surname> <given-names>Jiangchun</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Lin</surname> <given-names>Rumeng</given-names></name>
</contrib>
<contrib contrib-type="author">
<name><surname>Li</surname> <given-names>Yixian</given-names></name>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Fang</surname> <given-names>Jiehong</given-names></name>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Zhu</surname> <given-names>Cheng</given-names></name>
<xref ref-type="corresp" rid="c002"><sup>&#x002A;</sup></xref>
</contrib>
</contrib-group>
<aff><institution>Key Laboratory of Marine Food Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University</institution>, <addr-line>Hangzhou</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Vincenzina Fusco, Institute of Sciences of Food Production (CNR), Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Cemal Sandalli, Recep Tayyip Erdo&#x011F;an University, Turkey; Vengadesh Letchumanan, Monash University, Malaysia</p></fn>
<corresp id="c001">&#x002A;Correspondence: Jiehong Fang, <email>fangjh@cjlu.edu.cn</email></corresp>
<corresp id="c002">Cheng Zhu, <email>pzhch@cjlu.edu.cn</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Food Microbiology, a section of the journal Frontiers in Microbiology</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>26</day>
<month>06</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<year>2020</year>
</pub-date>
<volume>11</volume>
<elocation-id>1294</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>03</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>20</day>
<month>05</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2020 Jiang, Yu, Yang, Yu, Wu, Lin, Li, Fang and Zhu.</copyright-statement>
<copyright-year>2020</copyright-year>
<copyright-holder>Jiang, Yu, Yang, Yu, Wu, Lin, Li, Fang and Zhu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p><italic>Vibrio parahaemolyticus</italic> is the leading cause of seafood-borne bacterial poisoning in China and is a threat to human health worldwide. The aim of this study was to assess the antibiotic resistance profiles and distribution of heavy metal resistance of <italic>V. parahaemolyticus</italic> isolates from <italic>Penaeus vannamei</italic> from freshwater farms, seawater farms, and their corresponding markets in Zhejiang, China and to assess the relationship between multidrug resistance (MDR) and multi-heavy metal resistance (MHMR). Of the 360 <italic>P. vannamei</italic> samples that we tested, 90 (25.00%) were <italic>V. parahaemolyticus</italic> positive, but the occurrence of pathogenic isolates carrying the toxin genes <italic>tdh</italic> (4.44%) and <italic>trh</italic> (3.33%) was low. None of the tested isolates harbored both the <italic>tdh</italic> and <italic>trh</italic> genes. However, antibiotic resistance profiles varied among different sampling locations, levels of resistance to the antibiotics ampicillin (76.67%) and streptomycin (74.44%) were high overall, and MDR isolates were common (40.00% of all isolates). Heavy metal resistance patterns were similar among the different sampling locations. Overall, the majority of <italic>V. parahaemolyticus</italic> isolates displayed tolerance to Cd<sup>2+</sup> (60.00%), and fewer were resistant to Cu<sup>2+</sup> (40.00%), Zn<sup>2+</sup> (38.89%), Ni<sup>2+</sup> (24.44%), Cr<sup>3+</sup> (14.44%), and Co<sup>2+</sup> (8.89%). In addition, 34.44% (31/90) of isolates tested in this study were found to be MHMR. Using Pearson&#x2019;s correlation analysis, MDR and MHMR were found to be positively correlated (<italic>P</italic> = 0.004; <italic>R</italic> = 0.759). The 18 <italic>V. parahaemolyticus</italic> isolates that were both MDR and MHMR represented 18 sequence types, of which 12 were novel to the PubMLST database, and displayed a high level of genetic diversity, suggesting that dissemination may be affected by mobile genetic elements via horizontal gene transfer. However, a low percentage of class 1 integrons without gene cassettes and no class 2 or 3 integrons were detected in the 18 MDR and MHMR isolates or in the 90 <italic>V. parahaemolyticus</italic> isolates overall. Thus, we suggest that future research focus on elucidating the mechanisms that lead to a high prevalence of resistance determinants in <italic>V. parahaemolyticus</italic>. The results of this study provide data that will support aquatic animal health management and food safety risk assessments in the aquaculture industry.</p>
</abstract>
<kwd-group>
<kwd>antibiotic resistance</kwd>
<kwd>heavy metal resistance</kwd>
<kwd>integrons</kwd>
<kwd><italic>Penaeus vannamei</italic></kwd>
<kwd>sequence type diversity</kwd>
<kwd><italic>Vibrio parahaemolyticus</italic></kwd>
<kwd>virulence genes</kwd>
</kwd-group>
<counts>
<fig-count count="1"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="69"/>
<page-count count="12"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1">
<title>Introduction</title>
<p><italic>Vibrio parahaemolyticus</italic>, which was first identified in 1950 in Osaka, Japan, is a gram-negative, halophilic, mesophilic, aerobic bacterium that is found naturally in warm marine and estuarine habitats and causes outbreaks worldwide (<xref ref-type="bibr" rid="B3">Baker-Austin et al., 2008</xref>; <xref ref-type="bibr" rid="B58">Xie et al., 2017</xref>; <xref ref-type="bibr" rid="B64">Yang et al., 2017</xref>; <xref ref-type="bibr" rid="B21">He et al., 2019</xref>). Some <italic>V. parahaemolyticus</italic> isolates are pathogenic to humans and are responsible for many seafood-related human illnesses, such as gastrointestinal illnesses, diarrheal diseases, wound infections, and even septicemia (<xref ref-type="bibr" rid="B10">Devi et al., 2009</xref>; <xref ref-type="bibr" rid="B22">Hu and Chen, 2016</xref>; <xref ref-type="bibr" rid="B67">Yu et al., 2016</xref>). In addition, according to the official surveillance statistics of the national foodborne disease surveillance system in China, <italic>V. parahaemolyticus</italic> is one of the leading causes of foodborne bacterial poisoning in China (<xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>). The virulence of <italic>V. parahaemolyticus</italic> is attributed mainly to the presence of two genes: the <italic>tdh</italic> gene, which encodes thermostable direct hemolysin (TDH), and the <italic>trh</italic> gene, which encodes thermostable direct-related hemolysin (TRH) (<xref ref-type="bibr" rid="B40">Mok et al., 2019</xref>). TDH is a pore-forming, heat-stable protein that remains intact even when heated to 100&#x00B0;C for 10 min. Unlike the thermostable TDH, TRH is heat labile and can be inactivated by heating at 60&#x00B0;C for 10 min (<xref ref-type="bibr" rid="B52">Tan et al., 2017</xref>).</p>
<p>The shrimp aquaculture industry accounts for 15% of all internationally traded seafood products (FAO, 2019)<sup><xref ref-type="fn" rid="footnote1">1</xref></sup>. <italic>Penaeus vannamei</italic>, also known as the Pacific whiteleg shrimp, is the most popular shrimp in the world. The production of <italic>P. vannamei</italic> exceeds 70% of total global shrimp production (<xref ref-type="bibr" rid="B44">Peng et al., 2019</xref>). It is also one of the most popular shrimp species in China, and China has been the world&#x2019;s largest producer of <italic>P. vannamei</italic> since 2001 (FAO, 2019)<sup>1</sup>. <italic>P. vannamei</italic> is suitable for aquaculture owing to its fast growth, tolerance to a wide range of water salinity conditions and low temperatures, low dietary protein requirements, and high survival rates (<xref ref-type="bibr" rid="B15">Ghosh, 2018</xref>; <xref ref-type="bibr" rid="B60">Xu et al., 2018</xref>; <xref ref-type="bibr" rid="B7">Cheng et al., 2019</xref>). However, the increasing industrialization of large-scale intensive aquaculture systems and fast-growing shrimp culture models has led to poor hygienic conditions (<xref ref-type="bibr" rid="B67">Yu et al., 2016</xref>). As a consequence, the incidence of bacterial infection outbreaks is increasing (<xref ref-type="bibr" rid="B20">He et al., 2016</xref>; <xref ref-type="bibr" rid="B67">Yu et al., 2016</xref>). Shrimp represents an important reservoir of <italic>V. parahaemolyticus</italic>, especially in fresh and refrigerated stock (<xref ref-type="bibr" rid="B21">He et al., 2019</xref>). The distribution of <italic>V. parahaemolyticus</italic> in shrimps from China has previously been reported to be 22&#x2013;55%, depending on the season, water salinity, and geographic location (<xref ref-type="bibr" rid="B61">Xu et al., 2016</xref>; <xref ref-type="bibr" rid="B21">He et al., 2019</xref>). The prevalence of <italic>V. parahaemolyticus</italic> is also high in other Asian countries; for example, the rate reported at shrimp farms in India is 35&#x2013;53% (<xref ref-type="bibr" rid="B50">Silvester et al., 2015</xref>; <xref ref-type="bibr" rid="B1">Ananda Raja et al., 2017</xref>), and in Malaysia the rate was reported to be 57.8% in retail shrimps (<xref ref-type="bibr" rid="B32">Letchumanan et al., 2015</xref>). The use of florfenicol, thiamphenicol, enrofloxacin, flumequine, neomycin, doxycycline, ciprofloxacin, and certain sulfonamides is permitted in the aquaculture industry in China<sup><xref ref-type="fn" rid="footnote2">2</xref></sup>. However, the inappropriate use of antibiotics in aquaculture has contributed to the development of antimicrobial resistant bacteria, imposed serious problems on aquatic ecosystems, and represents a potential threat to human health (<xref ref-type="bibr" rid="B20">He et al., 2016</xref>). It has been reported that <italic>V. parahaemolyticus</italic> isolates from seafood and various environments are resistant to a variety of antibiotics, including ampicillin, aminoglycosides, ciprofloxacin, chloramphenicol, and others (<xref ref-type="bibr" rid="B59">Xie et al., 2016</xref>; <xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>). Thus, it is important to monitor variations in the antibiotic resistance profiles of <italic>V. parahaemolyticus</italic> isolates, as they may reveal changes in the sensitivity of the bacteria to antibiotics, particularly first-line treatments of seafood or human infections (<xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>). In addition, industrial pollution caused by increased industrialization has become one of the most challenging issues facing developing countries (<xref ref-type="bibr" rid="B26">Kang et al., 2018</xref>). Among the many industrial pollutants, heavy metals are frequently detected in marine animals and in various environments, such as agricultural soil and rivers (<xref ref-type="bibr" rid="B2">Ansari et al., 2008</xref>; <xref ref-type="bibr" rid="B38">Malik and Aleem, 2011</xref>). Heavy metals have also been suggested to enhance selection for antibiotic resistance in the environment and vice versa through co- or cross-resistance or coregulation of resistance pathways (<xref ref-type="bibr" rid="B39">Matyar et al., 2008</xref>).</p>
<p>The mechanism of coselection is highly favored when diverse resistance genes are located on the same mobile genetic elements (MGEs; <xref ref-type="bibr" rid="B6">Chapman, 2003</xref>). Of the various MGEs, class 1 integrons are thought to be strictly correlated to coselection mechanisms, as they are frequently associated with gene cassettes (GCs) in which both antibiotic resistance genes and heavy metal resistance genes are present (<xref ref-type="bibr" rid="B11">Di Cesare et al., 2016</xref>). It has been reported that the clinical version of the class 1 integron-integrase gene (<italic>intI1</italic>) has unique advantages as a universal marker of the selective pressures imposed by anthropogenic pollution (<xref ref-type="bibr" rid="B16">Gillings et al., 2015</xref>).</p>
<p>Multilocus sequence typing (MLST) is a tool for molecular epidemiology and population genetic studies of bacterial strains that provides consistent typing results of bacterial isolates in different laboratories (<xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>). <xref ref-type="bibr" rid="B17">Gonz&#x00E1;lez-Escalona et al. (2008)</xref> developed the first successful MLST protocol for the detection of genetically diverse <italic>V. parahaemolyticus</italic> isolates based on the sequences of internal fragments of seven housekeeping genes (<italic>recA</italic>, <italic>gyrB</italic>, <italic>dnaE</italic>, <italic>dtdS</italic>, <italic>pntA</italic>, <italic>pyrC</italic>, and <italic>tnaA</italic>). Subsequently, many researchers utilized this method to determine the genetic relatedness of global and geographically restricted <italic>V. parahaemolyticus</italic> isolates and to demonstrate the evolution and epidemiology of the bacteria, as this method offers high repeatability (<xref ref-type="bibr" rid="B55">Theethakaew et al., 2013</xref>; <xref ref-type="bibr" rid="B56">Urmersbach et al., 2014</xref>; <xref ref-type="bibr" rid="B18">Han et al., 2015</xref>; <xref ref-type="bibr" rid="B59">Xie et al., 2016</xref>; <xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>; <xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>). MLST also allows for the detection of slowly progressing sequence changes in the <italic>V. parahaemolyticus</italic> genome and may be used to monitor the spread of antibiotic and heavy metal resistance (<xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>).</p>
<p>Zhejiang, a province in the southeastern coastal region of China, is an important area for <italic>P. vannamei</italic> aquaculture. In cities in Zhejiang that are not located next to the sea, freshwater with low salinity is used for <italic>P. vannamei</italic> aquaculture, whereas seawater is used in coastal cities (<xref ref-type="bibr" rid="B7">Cheng et al., 2019</xref>). In this study, we analyzed <italic>V. parahaemolyticus</italic> isolates from <italic>P. vannamei</italic> from freshwater and seawater farms and their corresponding markets in Zhejiang, China to assess their virulence genes and antibiotic and heavy metal resistance profiles. Subsequently, we determined the relationship between multidrug resistance (MDR) and multi-heavy metal resistance (MHMR) of <italic>V. parahaemolyticus</italic> isolates as well as the clonal relatedness of those isolates. Finally, we assessed the role of integrons in the transmission of antibiotic and heavy metal resistance. This information will contribute to the monitoring of the prevalence of antibiotic and heavy metal resistance of <italic>V. parahaemolyticus</italic> isolated from <italic>P. vannamei</italic> and provide insight into the appropriate use of antibiotics and the establishment of risk assessment and health management protocols for aquaculture and seafood consumption.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title><italic>P. vannamei</italic> Sampling</title>
<p>A total of 360 <italic>P. vannamei</italic> samples were collected from a freshwater farm (farm A, <italic>n</italic> = 90), a seawater farm (farm B, <italic>n</italic> = 90), a market where <italic>P. vannamei</italic> cultured at farm A is sold (market A, <italic>n</italic> = 90) and a market where <italic>P. vannamei</italic> cultured at farm B is sold (market B, <italic>n</italic> = 90) in Zhejiang Province, China between 2017 and 2019. Samples were collected from each site during the period from July to September (summer) each year. Each fresh <italic>P. vannamei</italic> sample was placed in a sealed sterile plastic bag (Hope Bio-Technology Co., QingDao, China), transported to the laboratory in a cold box below 4&#x00B0;C, and immediately processed on the day of sampling. The pH value, temperature, and water salinity of each sampling site were recorded using a YSI Professional Plus Instrument (YSI Inc., Yellow Springs, OH, United States).</p>
</sec>
<sec id="S2.SS2">
<title>Isolation and Identification of <italic>V. parahaemolyticus</italic></title>
<p>Each fresh <italic>P. vannamei</italic> sample (10&#x2013;20 g) was mixed with alkaline peptone water (APW; Hope Bio-Technology Co.) containing 3% NaCl (1:1, w/v) in a sealed sterile plastic bag, and the mixture was homogenized for 2 min in a homogenizer (Scientz, Ningbo, China). Homogenates were incubated at 37&#x00B0;C with shaking at 200 rpm for 16&#x2013;18 h. After incubation, the enriched mixture was streaked onto thiosulfate&#x2013;citrate&#x2013;bile salts&#x2013;sucrose (TCBS, Hope Bio-Technology Co.) agar plates and incubated at 37&#x00B0;C for 16&#x2013;18 h. Presumptive colonies (green or bluish-green colonies, 2&#x2013;3 mm in diameter) were selected from each plate and streaked onto chromogenic <italic>Vibrio</italic> agar plates (CHROMagar Microbiology, Paris, France). Because the microbial cells of the aforementioned homogenates were enriched with many of the same colonies, we selected one potential colony (a purple colony, 2&#x2013;3 mm in diameter) from each sample on the chromogenic <italic>Vibrio</italic> agar plates that represented the characteristics of <italic>V. parahaemolyticus</italic>. The potential colonies were cultured in APW containing 3% NaCl at 37&#x00B0;C for 24 h with shaking at 200 rpm and stored in 20% sterile glycerol at &#x2212;80&#x00B0;C until further analysis.</p>
</sec>
<sec id="S2.SS3">
<title>Molecular Identification and Virulence Gene Detection of <italic>V. parahaemolyticus</italic> Isolates</title>
<p>Polymerase chain reaction (PCR) was used to detect the highly conserved species-specific gene <italic>toxR</italic> and the virulence genes <italic>tdh</italic> and <italic>trh</italic> in all <italic>V. parahaemolyticus</italic> isolates (<xref ref-type="bibr" rid="B27">Law et al., 2017</xref>). Genomic DNA was extracted using a bacterial DNA extraction kit (Sangon, Shanghai, China) according to the manufacturer&#x2019;s instructions. The primers used to detect <italic>toxR, tdh</italic> and <italic>trh</italic> are shown in <xref ref-type="table" rid="T1">Table 1</xref>. Each PCR amplification reaction was performed in a 25 &#x03BC;L mixture containing 250 ng of DNA as the template, 400 nM each primer, 200 mM each deoxynucleotide triphosphate (dNTP), 10 &#x00D7; PCR buffer, and 5 U of Ex-Taq DNA polymerase (Takara-Bio, Beijing, China). PCR amplification was initiated by incubating the reaction mixture at 94&#x00B0;C for 1 min, followed by 30 cycles at 98&#x00B0;C for 30 s, annealing at 55&#x00B0;C for 30 s, and extension at 72&#x00B0;C for 30 s; and a final extension at 72&#x00B0;C for 10 min (<xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>). PCR products (5 &#x03BC;L) were mixed with 1 &#x03BC;L of 6 &#x00D7; loading buffer dye and analyzed by electrophoresis on a 1.2% agarose gel containing GoldView (Sangon, Shanghai, China). <italic>V. parahaemolyticus</italic> isolates ATCC33847 (<italic>tdh</italic><sup>+</sup> and <italic>trh</italic><sup>&#x2013;</sup>) and ATCC17802 (<italic>tdh</italic><sup>&#x2013;</sup> and <italic>trh</italic><sup>+</sup>) were used as positive control isolates, and distilled water was used as the negative control.</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Polymerase chain reaction primers used in this study.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Target</td>
<td valign="top" align="center">Primer</td>
<td valign="top" align="left">Sequence (5&#x2032;&#x2013;3&#x2032;)</td>
<td valign="top" align="center">Amplicon length (bp)</td>
<td valign="top" align="center">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>toxR</italic></td>
<td valign="top" align="center">toxRF</td>
<td valign="top" align="left">TGTTTGGCGTGAGCAAGGTT</td>
<td valign="top" align="center">340</td>
<td valign="top" align="center">Primers used in our lab</td>
</tr>
<tr>
<td/>
<td valign="top" align="center">toxRR</td>
<td valign="top" align="left">ATTCACAGCAGAAGCCACAG</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Trh</italic></td>
<td valign="top" align="center">trhF</td>
<td valign="top" align="left">TTGGCTTCGATATTTTCAGTATCT</td>
<td valign="top" align="center">500</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B49">Silva et al., 2018</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">trhR</td>
<td valign="top" align="left">CATAACAAACATATGCCCATTTCCG</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>Tdh</italic></td>
<td valign="top" align="center">tdhF</td>
<td valign="top" align="left">GGTACTAAATGGTTGACATC</td>
<td valign="top" align="center">251</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">tdhR</td>
<td valign="top" align="left">CCACTACCACTCTCATATGC</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>intI</italic>1</td>
<td valign="top" align="center">intI1F</td>
<td valign="top" align="left">GGCTTCGTGATGCCTGCTT</td>
<td valign="top" align="center">146</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B37">Luo et al., 2010</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">intI1R</td>
<td valign="top" align="left">CATTCCTGGCCGTGGTTCT</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>intI</italic>2</td>
<td valign="top" align="center">intI2L</td>
<td valign="top" align="left">CACGGATATGCGACAAAAAGGT</td>
<td valign="top" align="center">789</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B42">Odumosu et al., 2013</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">intI2R</td>
<td valign="top" align="left">GTAGCAAACGAGTGACGAAATG</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>intI</italic>3</td>
<td valign="top" align="center">intI3L</td>
<td valign="top" align="left">GCCTCCGGCAGCGACTTTCAG</td>
<td valign="top" align="center">980</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B42">Odumosu et al., 2013</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">intI3R</td>
<td valign="top" align="left">ACGGATCTGCCAAACCTGACT</td>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">Cassette arrays in class 1 integron</td>
<td valign="top" align="center">hep58</td>
<td valign="top" align="left">TCATGGCTTGTTATGACTGT</td>
<td valign="top" align="center">Class 1 integron variable region</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B42">Odumosu et al., 2013</xref></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">hep59</td>
<td valign="top" align="left">GTAGGGCTTATTATGCACGC</td>
<td/>
<td/>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="S2.SS4">
<title>Antibiotic Susceptibility Testing</title>
<p>The susceptibility of the confirmed <italic>V. parahaemolyticus</italic> isolates to 18 antibiotics was assessed using the disk diffusion method on Mueller&#x2013;Hinton (MH) agar (Oxoid Ltd., Basingstoke, United Kingdom) in accordance with the guidelines of the Clinical and Laboratory Standards Institute (<xref ref-type="bibr" rid="B8">Clinical and Laboratory Standards Institute [CLSI], 2017</xref>). The 18 antibiotic disks (Hangzhou Microbial Reagent Co., Hangzhou, China) belonged to 8 different classes and were as follows: quinolones (enrofloxacin, 10 &#x03BC;g; ciprofloxacin, 5 &#x03BC;g; norfloxacin, 10 &#x03BC;g), tetracyclines (tetracycline, 30 &#x03BC;g; doxycycline, 30 &#x03BC;g), aminoglycosides (streptomycin, 10 &#x03BC;g), &#x03B2;-lactams (ampicillin, 10 &#x03BC;g; cefazolin, 30 &#x03BC;g; cefamandole, 30 &#x03BC;g; ceftizoxime, 30 &#x03BC;g; cefepime, 30 &#x03BC;g; imipenem, 10 &#x03BC;g), chloramphenicols (chloramphenicol, 30 &#x03BC;g; florfenicol, 30 &#x03BC;g), sulfonamides (trimethoprim&#x2013;sulfamethoxazole, 23.75 &#x03BC;g/1.25 &#x03BC;g; sulfisoxazole, 300 &#x03BC;g), polypeptides (polymyxin B, 300 &#x03BC;g), and furans (nitrofurantoin, 300 &#x03BC;g). Briefly, fresh cultures were inoculated into LB broth and incubated to a turbidity equivalent to a 0.5 McFarland standard. In a sterile environment, bacterial cultures were placed onto MH agar (Hope Bio-Technology Co.) plates, followed by antibiotic disks. The inoculated MH agar plates were incubated at 37&#x00B0;C for 24 h, and the size of the clear zone of inhibition was used to classify isolates as susceptible, intermediate, or resistant according to <xref ref-type="bibr" rid="B8">Clinical and Laboratory Standards Institute [CLSI] (2017)</xref> guidelines. <italic>Escherichia coli</italic> ATCC 25922 was used as a control (<xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>). Isolates resistant to three or more classes of antibiotics were classified as MDR (<xref ref-type="bibr" rid="B7">Cheng et al., 2019</xref>).</p>
</sec>
<sec id="S2.SS5">
<title>Determination of Heavy Metal Resistance of <italic>V. parahaemolyticus</italic> Isolates</title>
<p>To date, no standard method is available to measure bacterial susceptibility to heavy metals (<xref ref-type="bibr" rid="B20">He et al., 2016</xref>). According to the method described by <xref ref-type="bibr" rid="B38">Malik and Aleem (2011)</xref> with some modifications, the minimum inhibitory concentration (MIC) of heavy metals was determined for each <italic>V. parahaemolyticus</italic> isolate using MH agar containing Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup>, Co<sup>2+</sup>, and Cr<sup>3+</sup> in varying concentrations (100&#x2013;3200 &#x03BC;g/mL). Stock solutions of metal salts were prepared in sterilized deionized water and added to MH agar at various concentrations, followed by spot inoculation with approximately 3 &#x00D7; 10<sup>6</sup> cells. The plates were then incubated at 37&#x00B0;C for 18&#x2013;24 h. The metals used were ZnCl<sub>2</sub>, CuSO<sub>4</sub>&#x22C5;5H<sub>2</sub>O, NiCl<sub>2</sub>, CdCl<sub>2</sub>&#x22C5;5H<sub>2</sub>O, CoCl<sub>2</sub>&#x22C5;6H<sub>2</sub>O, and CrCl<sub>3</sub>&#x22C5;6H<sub>2</sub>O (Shanghai Macklin Biochemical Co., Ltd., Shanghai, China). Isolates were considered resistant if their MIC values exceeded that of the C600 strain of <italic>E. coli</italic> K-12, which was used as a control (<xref ref-type="bibr" rid="B39">Matyar et al., 2008</xref>). Isolates resistant to three or more heavy metals were classified as MHMR.</p>
</sec>
<sec id="S2.SS6">
<title>MLST Analysis</title>
<p>The clonal relatedness of 18 <italic>V. parahaemolyticus</italic> isolates that were both MDR and MHMR were further analyzed by MLST analysis. Seven housekeeping genes (<italic>recA</italic>, <italic>gyrB</italic>, <italic>dnaE</italic>, <italic>dtdS</italic>, <italic>pntA</italic>, <italic>pyrC</italic>, and <italic>tnaA</italic>) were chosen as target genes according to the PubMLST website.<sup>3</sup> PCR primers, amplification conditions, and sequencing methods are described on the PubMLST website. The sequencing results for each housekeeping gene were analyzed using PubMLST to assign sequence types (STs). If STs or alleles were found to differ from preexisting ones in the database, the strain information of the new STs or the new allelic profiles with forward and reverse trace files were submitted to the database curator to obtain a new serial number (<xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>).</p>
</sec>
<sec id="S2.SS7">
<title>Detection of Integron Classes and GCs</title>
<p>The presence of integrase genes <italic>intI1</italic>, <italic>intI2</italic>, and <italic>intI3</italic> and GCs was confirmed in all 90 <italic>V. parahaemolyticus</italic> isolates using PCR with specific primers (<xref ref-type="table" rid="T1">Table 1</xref>). PCR amplification was performed in a 25 &#x03BC;L mixture as described in the foregoing, and reaction conditions included preincubation at 94&#x00B0;C for 1 min, followed by 35 cycles of denaturation at 98&#x00B0;C for 30 s, annealing at 60&#x00B0;C (<italic>intI1</italic>) or 55&#x00B0;C (<italic>intI2</italic> and <italic>intI3</italic>) for 30 s, and elongation at 72&#x00B0;C for 30 s (<italic>intI1</italic>) or 1 min (<italic>intI2</italic> and <italic>intI3</italic>); and a final extension at 72&#x00B0;C for 10 min (<xref ref-type="bibr" rid="B14">Fang et al., 2019</xref>).</p>
<p>Because the <italic>intI2</italic> and <italic>intI3</italic> genes were not detected in any of our isolates, the variable regions (VRs) of isolates that were positive for the <italic>intI1</italic> gene were evaluated using PCR. Class 1 integron VRs were amplified using the primers hep58 and hep59 (<xref ref-type="table" rid="T1">Table 1</xref>) and the following cycling conditions: preincubation at 94&#x00B0;C for 1 min; followed by 35 cycles of denaturation at 98&#x00B0;C for 30 s, annealing at 55&#x00B0;C for 30 s, and elongation at 72&#x00B0;C for 4 min; and a final extension at 72&#x00B0;C for 10 min (<xref ref-type="bibr" rid="B14">Fang et al., 2019</xref>).</p>
</sec>
<sec id="S2.SS8">
<title>Statistical Analysis</title>
<p>All experiments were performed in triplicate. Correlations were identified using Pearson&#x2019;s correlation analysis. The degree of correlation was considered weak if the correlation coefficient (<italic>R</italic>) was &#x003C; 0.4, moderate if <italic>R</italic> was between 0.4 and 0.6, and strong if <italic>R</italic> was &#x2265; 0.6. Differences were considered significant when <italic>P</italic>-values were &#x003C; 0.05. All analyses were performed using SPSS version 20.0 (IBM Corp., Armonk, NY, United States).</p>
</sec>
</sec>
<sec id="S3">
<title>Results</title>
<sec id="S3.SS1">
<title>Physicochemical Properties of Each Sampling Site</title>
<p>Analytical data for various physicochemical parameters (pH value, temperature, and water salinity) were collected from the four different sampling sites. As shown in <xref ref-type="table" rid="T2">Table 2</xref>, at the four sampling sites temperature varied from 29.10 &#x00B1; 0.03 to 32.50 &#x00B1; 0.05&#x00B0;C, and pH ranged from 6.92 &#x00B1; 0.03 to 8.00 &#x00B1; 0.20, which is within the permissible range for shrimp culture. In addition, water salinity varied over a wide range, and was low at farm A (1.75 &#x00B1; 0.03 ppt) and market A (1.43 &#x00B1; 0.02 ppt), but was high at farm B (27.10 &#x00B1; 0.09 ppt) and market B (23.70 &#x00B1; 0.18 ppt).</p>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Physicochemical parameters of the four sampling sites.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Sources of samples</td>
<td valign="top" align="center">Temperature (&#x00B0;C)</td>
<td valign="top" align="center">pH</td>
<td valign="top" align="center">Salinity (ppt)</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Farm A</td>
<td valign="top" align="center">31.53 &#x00B1; 0.05</td>
<td valign="top" align="center">8.00 &#x00B1; 0.20</td>
<td valign="top" align="center">1.75 &#x00B1; 0.03</td>
</tr>
<tr>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center">32.50 &#x00B1; 0.05</td>
<td valign="top" align="center">7.52 &#x00B1; 0.12</td>
<td valign="top" align="center">27.10 &#x00B1; 0.09</td>
</tr>
<tr>
<td valign="top" align="left">Market A</td>
<td valign="top" align="center">29.10 &#x00B1; 0.03</td>
<td valign="top" align="center">7.64 &#x00B1; 0.01</td>
<td valign="top" align="center">1.43 &#x00B1; 0.02</td>
</tr>
<tr>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">30.18 &#x00B1; 0.09</td>
<td valign="top" align="center">6.92 &#x00B1; 0.03</td>
<td valign="top" align="center">23.70 &#x00B1; 0.18</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="S3.SS2">
<title>Identification of <italic>V. parahaemolyticus</italic> Isolates and Detection of <italic>tdh</italic> and <italic>trh</italic> Genes</title>
<p>Based on the morphology of colonies on chromogenic <italic>Vibrio</italic> agar plates, 90 (25.00%) isolates from the 360 <italic>P. vannamei</italic> samples were selected for PCR detection. <italic>ToxR</italic>-PCR assays revealed positive amplification of the <italic>toxR</italic> gene, with a 340 bp amplicon band present in 100% of the presumptive <italic>V. parahaemolyticus</italic> isolates, including 3 (3.33%) of the 90 samples from farm A, 31 (34.44%) of the 90 samples from farm B, 20 (22.22%) of the 90 samples from market A, and 36 (40.00%) of the 90 samples from market B. Among these isolates, four from <italic>P. vannamei</italic> at farm B carried the <italic>tdh</italic> gene (4.44%), whereas three isolates from <italic>P. vannamei</italic> at market B carried the <italic>trh</italic> gene (3.33%). None of the tested isolates harbored both the <italic>tdh</italic> and <italic>trh</italic> genes.</p>
</sec>
<sec id="S3.SS3">
<title>Antibiotic Resistance Profiles of <italic>V. parahaemolyticus</italic> Isolates</title>
<p>The antibiotic resistance profiles of 90 examined <italic>V. parahaemolyticus</italic> isolates to 18 antibiotics from eight classes are shown in <xref ref-type="table" rid="T3">Table 3</xref>. The profiles varied among the four different sampling locations. Overall, <italic>V. parahaemolyticus</italic> isolates were most resistant to ampicillin and streptomycin, with resistance rates of 76.67% (69/90) and 74.44% (67/90), respectively. In addition, these isolates exhibited relatively high resistance rates for trimethoprim&#x2013;sulfamethoxazole (64.44%, 58/90), tetracycline (57.78%, 52/90), chloramphenicol (57.78%, 52/90), florfenicol (53.33%, 48/90), enrofloxacin (47.78%, 43/90), sulfisoxazole (47.78%, 43/90), doxycycline (46.67%, 42/90), cefazolin (25.56%, 23/90), and cefamandole (18.89%, 17/90). Low levels of resistance were observed for ceftizoxime (4.44%, 4/90) and cefepime (3.33%, 3/90). None of our isolates demonstrated resistance to ciprofloxacin, norfloxacin, imipenem, polymyxin B, or nitrofurantoin. Furthermore, 40.00% (36/90) of the isolates were classified as MDR.</p>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>Prevalence of antimicrobial resistance in <italic>Vibrio parahaemolyticus</italic> isolates.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left" colspan="2">Antimicrobials</td>
<td valign="top" align="center">Breakpoint (<xref ref-type="bibr" rid="B8">Clinical and Laboratory Standards Institute [CLSI], 2017</xref>)</td>
<td valign="top" align="center" colspan="5">Percentage of resistant isolates, %</td>
</tr>
<tr>
<td valign="top" align="left" colspan="3"/>
<td valign="top" align="left" colspan="5"><hr/></td>
</tr>
<tr>
<td valign="top" colspan="2"/>
<td valign="top" align="center">Resistant/Intermediate/Susceptible (mm)</td>
<td valign="top" align="center">Farm A (<italic>n</italic> = 3)</td>
<td valign="top" align="center">Farm B (<italic>n</italic> = 31)</td>
<td valign="top" align="center">Market A (<italic>n</italic> = 20)</td>
<td valign="top" align="center">Market B (<italic>n</italic> = 36)</td>
<td valign="top" align="center">Total (<italic>n</italic> = 90)</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Quinolone</td>
<td valign="top" align="left">Enrofloxacin (10 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 15/16&#x2013;20/ &#x2265; 21</td>
<td valign="top" align="center">33.30</td>
<td valign="top" align="center">41.94</td>
<td valign="top" align="center">75.00</td>
<td valign="top" align="center">38.89</td>
<td valign="top" align="center">47.78</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Ciprofloxacin (5 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 15/16&#x2013;20/ &#x2265; 21</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Norfloxacin (10 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 12/13&#x2013;16/ &#x2265; 17</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
</tr>
<tr>
<td valign="top" align="left">Tetracycline</td>
<td valign="top" align="left">Tetracycline (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 11/12&#x2013;14/ &#x2265; 15</td>
<td valign="top" align="center">33.33</td>
<td valign="top" align="center">67.74</td>
<td valign="top" align="center">65.00</td>
<td valign="top" align="center">47.22</td>
<td valign="top" align="center">57.78</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Doxycycline (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 10/11&#x2013;13/ &#x2265; 14</td>
<td valign="top" align="center">33.30</td>
<td valign="top" align="center">67.74</td>
<td valign="top" align="center">35.00</td>
<td valign="top" align="center">36.11</td>
<td valign="top" align="center">46.67</td>
</tr>
<tr>
<td valign="top" align="left">Aminoglycoside</td>
<td valign="top" align="left">Streptomycin (10 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 11/12&#x2013;14/ &#x2265; 15</td>
<td valign="top" align="center">33.33</td>
<td valign="top" align="center">74.19</td>
<td valign="top" align="center">70.00</td>
<td valign="top" align="center">80.56</td>
<td valign="top" align="center">74.44</td>
</tr>
<tr>
<td valign="top" align="left">&#x03B2;-Lactam</td>
<td valign="top" align="left">Ampicillin (10 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 13/14&#x2013;16/ &#x2265; 17</td>
<td valign="top" align="center">66.67</td>
<td valign="top" align="center">61.29</td>
<td valign="top" align="center">85.00</td>
<td valign="top" align="center">86.11</td>
<td valign="top" align="center">76.67</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Cefazolin (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 19/20&#x2013;22/ &#x2265; 21</td>
<td valign="top" align="center">33.30</td>
<td valign="top" align="center">19.35</td>
<td valign="top" align="center">35.00</td>
<td valign="top" align="center">25.00</td>
<td valign="top" align="center">25.56</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Cefamandole (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 14/15&#x2013;17/ &#x2265; 18</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">25.81</td>
<td valign="top" align="center">15.00</td>
<td valign="top" align="center">16.67</td>
<td valign="top" align="center">18.89</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Ceftizoxime (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 21/22&#x2013;24/ &#x2265; 25</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">6.45</td>
<td valign="top" align="center">5.00</td>
<td valign="top" align="center">2.78</td>
<td valign="top" align="center">4.44</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Cefepime (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 18/19&#x2013;24/ &#x2265; 25</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">3.23</td>
<td valign="top" align="center">5.00</td>
<td valign="top" align="center">2.78</td>
<td valign="top" align="center">3.33</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Imipenem (10 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 13/14&#x2013;15/ &#x2265; 16</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
</tr>
<tr>
<td valign="top" align="left">Chloramphenicol</td>
<td valign="top" align="left">Chloramphenicol (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 12/13&#x2013;17/ &#x2265; 18</td>
<td valign="top" align="center">33.33</td>
<td valign="top" align="center">61.29</td>
<td valign="top" align="center">45.00</td>
<td valign="top" align="center">63.89</td>
<td valign="top" align="center">57.78</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Florfenicol (30 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 12/13&#x2013;17/ &#x2265; 18</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">67.74</td>
<td valign="top" align="center">40.00</td>
<td valign="top" align="center">52.78</td>
<td valign="top" align="center">53.33</td>
</tr>
<tr>
<td valign="top" align="left">Sulfonamides</td>
<td valign="top" align="left">Trimethoprim&#x2013;sulfamethoxazole (23.75/1.25 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 10/11&#x2013;15/ &#x2265; 16</td>
<td valign="top" align="center">66.67</td>
<td valign="top" align="center">83.87</td>
<td valign="top" align="center">50.00</td>
<td valign="top" align="center">55.55</td>
<td valign="top" align="center">64.44</td>
</tr>
<tr>
<td/>
<td valign="top" align="left">Sulfisoxazole (300 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 12/13&#x2013;16/ &#x2265; 17</td>
<td valign="top" align="center">33.33</td>
<td valign="top" align="center">54.84</td>
<td valign="top" align="center">50.00</td>
<td valign="top" align="center">41.67</td>
<td valign="top" align="center">47.78</td>
</tr>
<tr>
<td valign="top" align="left">Polypeptide</td>
<td valign="top" align="left">Polymyxin B (300 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 8/9&#x2013;11/ &#x2265; 12</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
</tr>
<tr>
<td valign="top" align="left">Furan</td>
<td valign="top" align="left">Nitrofurantoin (300 &#x03BC;g)</td>
<td valign="top" align="center">&#x2264; 14/15&#x2013;16/ &#x2265; 17</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
<td valign="top" align="center">0.00</td>
</tr>
<tr>
<td valign="top" align="left" colspan="3">MDR</td>
<td valign="top" align="left">33.33</td>
<td valign="top" align="center">38.71</td>
<td valign="top" align="center">40.00</td>
<td valign="top" align="center">41.67</td>
<td valign="top" align="center">40.00</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="S3.SS4">
<title>Tolerance of <italic>V. parahaemolyticus</italic> Isolates to Heavy Metals</title>
<p>In this study, a total of 90 <italic>V. parahaemolyticus</italic> isolates were examined for their susceptibility to heavy metals. When compared to the <italic>E. coli</italic> K-12 C600 quality control strain, maximum MIC values of 3200 &#x03BC;g/mL for Cd<sup>2+</sup>, Cu<sup>2+</sup>, Zn<sup>2+</sup>, and Ni<sup>2+</sup> and 1600 &#x03BC;g/mL for Cr<sup>3+</sup> and Co<sup>2+</sup> were observed (<xref ref-type="table" rid="T4">Table 4</xref>). Overall, the majority of <italic>V. parahaemolyticus</italic> isolates displayed tolerance to Cd<sup>2+</sup> (60.00%), and fewer were resistant to Cu<sup>2+</sup> (40.00%), Zn<sup>2+</sup> (38.89%), Ni<sup>2+</sup> (24.44%), Cr<sup>3+</sup> (14.44%), and Co<sup>2+</sup> (8.89%). In total, 34.44% (31/90) of isolates in this study were found to be resistant to three or more heavy metals and were classified as MHMR. In addition, as shown in <xref ref-type="fig" rid="F1">Figure 1</xref>, <italic>V. parahaemolyticus</italic> isolates derived from different shrimp sources had similar heavy metal resistance profiles.</p>
<table-wrap position="float" id="T4">
<label>TABLE 4</label>
<caption><p>Incidence of heavy metal resistance among the <italic>V. parahaemolyticus</italic> isolates.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Heavy metal</td>
<td valign="top" align="center" colspan="6">MIC (&#x03BC;g/mL)<hr/></td>
<td valign="top" align="center" colspan="2">Resistance<hr/></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">100</td>
<td valign="top" align="center">200</td>
<td valign="top" align="center">400</td>
<td valign="top" align="center">800</td>
<td valign="top" align="center">1600</td>
<td valign="top" align="center">3200</td>
<td valign="top" align="center"><italic>n</italic></td>
<td valign="top" align="right">(%)</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Cd<sup>2+</sup></td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">31<sup>a</sup></td>
<td valign="top" align="center">29</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">54</td>
<td valign="top" align="right">60.00</td>
</tr>
<tr>
<td valign="top" align="left">Cu<sup>2+</sup></td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">29<sup>a</sup></td>
<td valign="top" align="center">21</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">36</td>
<td valign="top" align="right">40.00</td>
</tr>
<tr>
<td valign="top" align="left">Zn<sup>2+</sup></td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">19</td>
<td valign="top" align="center">32<sup>a</sup></td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">18</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">35</td>
<td valign="top" align="right">38.89</td>
</tr>
<tr>
<td valign="top" align="left">Ni<sup>2+</sup></td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">43<sup> a</sup></td>
<td valign="top" align="center">7</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">22</td>
<td valign="top" align="right">24.44</td>
</tr>
<tr>
<td valign="top" align="left">Cr<sup>3+</sup></td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">21</td>
<td valign="top" align="center">55<sup>a</sup></td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">13</td>
<td valign="top" align="right">14.44</td>
</tr>
<tr>
<td valign="top" align="left">Co<sup>2+</sup></td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">80<sup>a</sup></td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">8</td>
<td valign="top" align="right">8.89</td>
</tr>
<tr>
<td valign="top" align="left">MHMR</td>
<td/>
<td/>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="center">31</td>
<td valign="top" align="right">34.44</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic><sup>a</sup>Minimal inhibitory concentration of standard strain E. coli K-12.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Incidence of heavy metal resistance of <italic>Vibrio parahaemolyticus</italic> isolates derived from four different sampling sites.</p></caption>
<graphic xlink:href="fmicb-11-01294-g001.tif"/>
</fig>
</sec>
<sec id="S3.SS5">
<title>Relationship Between Pathogenicity, MDR, and MHMR</title>
<p>In our study, although none of the four isolates harboring the <italic>tdh</italic> gene or the three isolates harboring the <italic>trh</italic> gene were MDR or MHMR, our data are insufficient to conclude that there was a correlation between pathogenicity and MDR or between pathogenicity and MHMR. However, MDR and MHMR were found to be positively correlated using Pearson&#x2019;s correlation analysis (<italic>P</italic> = 0.004; <italic>R</italic> = 0.759).</p>
</sec>
<sec id="S3.SS6">
<title>ST Diversity</title>
<p>MLST analysis revealed high molecular diversity among the 18 <italic>V. parahaemolyticus</italic> isolates in this study that were both MDR and MHMR (<xref ref-type="table" rid="T5">Table 5</xref>). A total of 18 different STs were identified, of which 12 (66.67%), namely 2217&#x2013;2228, were newly identified (shown in bold in <xref ref-type="table" rid="T5">Table 5</xref>). The numbers of alleles observed for each MLST locus in our study were as follows: 14 <italic>dnaE</italic>, 14 <italic>gyrB</italic>, 11 <italic>recA</italic>, 14 <italic>dtdS</italic>, 10 <italic>pntA</italic>, 13 <italic>pyrC</italic>, and 12 <italic>tnaA</italic>. There were also seven novel loci: <italic>dnaE</italic> 401; <italic>gyrB</italic> 539, 540; <italic>dtdS</italic> 484, 485, 486; and <italic>pntA</italic> 271. All 12 novel STs were submitted to the international PubMLST/<italic>V. parahaemolyticus</italic> database<sup><xref ref-type="fn" rid="footnote3">3</xref></sup>.</p>
<table-wrap position="float" id="T5">
<label>TABLE 5</label>
<caption><p>Allele profiles, sequence types (STs), virulence genes, integrons, antimicrobial resistance profiles, and heavy metal resistance profiles of 18 multidrug resistant and multi-heavy metal resistant <italic>Vibrio parahaemolyticus</italic> isolates.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Strain</td>
<td valign="top" align="left">Sources</td>
<td valign="top" align="center" colspan="7">Allele profiles<hr/></td>
<td valign="top" align="center">STs</td>
<td valign="top" align="center" colspan="2">Virulence genes<hr/></td>
<td valign="top" align="center">Integrons</td>
<td valign="top" align="left">Antimicrobial resistance profiles</td>
<td valign="top" align="left">Heavy metal resistance profiles</td>
</tr>
<tr>
<td/>
<td/>
<td valign="top" align="center"><italic>dnaE</italic></td>
<td valign="top" align="center"><italic>gyrB</italic></td>
<td valign="top" align="center"><italic>recA</italic></td>
<td valign="top" align="center"><italic>dtdS</italic></td>
<td valign="top" align="center"><italic>pntA</italic></td>
<td valign="top" align="center"><italic>pyrC</italic></td>
<td valign="top" align="center"><italic>tnaA</italic></td>
<td/>
<td valign="top" align="center"><italic>tdh</italic></td>
<td valign="top" align="center"><italic>trh</italic></td>
<td/>
<td/>
<td/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">MA-3</td>
<td valign="top" align="left">Market A</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">113</td>
<td valign="top" align="center">28</td>
<td valign="top" align="center">94</td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">83</td>
<td valign="top" align="center">23</td>
<td valign="top" align="center"><bold>2217</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-STR-AMP</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MA-8</td>
<td valign="top" align="left">Market A</td>
<td valign="top" align="center">93</td>
<td valign="top" align="center">224</td>
<td valign="top" align="center">75</td>
<td valign="top" align="center">139</td>
<td valign="top" align="center">117</td>
<td valign="top" align="center">223</td>
<td valign="top" align="center">124</td>
<td valign="top" align="center">919</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-STR-AMP</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MA-17</td>
<td valign="top" align="left">Market A</td>
<td valign="top" align="center">47</td>
<td valign="top" align="center">112</td>
<td valign="top" align="center">75</td>
<td valign="top" align="center">97</td>
<td valign="top" align="center">68</td>
<td valign="top" align="center">69</td>
<td valign="top" align="center">64</td>
<td valign="top" align="center"><bold>2221</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">+</td>
<td valign="top" align="left">ENR-TET-STR-AMP-CHL-FLO</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Ni<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">FB-11</td>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center">76</td>
<td valign="top" align="center">88</td>
<td valign="top" align="center">31</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">53</td>
<td valign="top" align="center">45</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">165</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">+</td>
<td valign="top" align="left">ENR-TET-DOX-AMP-CFZ-ZOX-FEP</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">FB-15</td>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center">175</td>
<td valign="top" align="center">22</td>
<td valign="top" align="center">168</td>
<td valign="top" align="center">201</td>
<td valign="top" align="center">130</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">73</td>
<td valign="top" align="center">471</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-STR-AMP-CFZ-ZOX</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Ni<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">FB-16</td>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">104</td>
<td valign="top" align="center">144</td>
<td valign="top" align="center">126</td>
<td valign="top" align="center">28</td>
<td valign="top" align="center">226</td>
<td valign="top" align="center">159</td>
<td valign="top" align="center"><bold>2219</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">TET-DOX-STR-AMP</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Ni<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">FB-21</td>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center">82</td>
<td valign="top" align="center"><bold>539</bold></td>
<td valign="top" align="center">134</td>
<td valign="top" align="center">373</td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center"><bold>2223</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-AMP-CFZ-ZOX-CHL-SXT-SUL</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">FB-23</td>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center"><bold>401</bold></td>
<td valign="top" align="center">188</td>
<td valign="top" align="center">134</td>
<td valign="top" align="center"><bold>484</bold></td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center"><bold>2224</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-STR-AMP-CFZ-MA-ZOX</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">FB-31</td>
<td valign="top" align="left">Farm B</td>
<td valign="top" align="center">80</td>
<td valign="top" align="center"><bold>540</bold></td>
<td valign="top" align="center">61</td>
<td valign="top" align="center"><bold>485</bold></td>
<td valign="top" align="center">35</td>
<td valign="top" align="center">141</td>
<td valign="top" align="center">157</td>
<td valign="top" align="center"><bold>2225</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-AMP-SUL</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-2</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">71</td>
<td valign="top" align="center">144</td>
<td valign="top" align="center"><bold>486</bold></td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">11</td>
<td valign="top" align="center">107</td>
<td valign="top" align="center"><bold>2222</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-DOX-STR-CHL-FLO</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-7</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">51</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">25</td>
<td valign="top" align="center">76</td>
<td valign="top" align="center"><bold>271</bold></td>
<td valign="top" align="center">173</td>
<td valign="top" align="center">33</td>
<td valign="top" align="center"><bold>2226</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-AMP-FEP-FLO-SUL</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Ni<sup>2+</sup>, Co<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-11</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">36</td>
<td valign="top" align="center">304</td>
<td valign="top" align="center">188</td>
<td valign="top" align="center">218</td>
<td valign="top" align="center">28</td>
<td valign="top" align="center">168</td>
<td valign="top" align="center">37</td>
<td valign="top" align="center"><bold>2220</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-STR-AMP-CHL-FLO</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cd<sup>2+</sup>, Co<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-14</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">175</td>
<td valign="top" align="center">112</td>
<td valign="top" align="center">168</td>
<td valign="top" align="center">201</td>
<td valign="top" align="center">68</td>
<td valign="top" align="center">69</td>
<td valign="top" align="center">64</td>
<td valign="top" align="center"><bold>2227</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-AMP-CFZ-FLO</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-17</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">175</td>
<td valign="top" align="center">22</td>
<td valign="top" align="center">25</td>
<td valign="top" align="center">201</td>
<td valign="top" align="center">130</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">73</td>
<td valign="top" align="center"><bold>2218</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-AMP-CHL-FLO</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-24</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">51</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">168</td>
<td valign="top" align="center">76</td>
<td valign="top" align="center"><bold>271</bold></td>
<td valign="top" align="center">173</td>
<td valign="top" align="center">33</td>
<td valign="top" align="center"><bold>2228</bold></td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-STR-AMP-MA-ZOX-FEP</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-29</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">175</td>
<td valign="top" align="center">49</td>
<td valign="top" align="center">168</td>
<td valign="top" align="center">201</td>
<td valign="top" align="center">130</td>
<td valign="top" align="center">17</td>
<td valign="top" align="center">73</td>
<td valign="top" align="center">2174</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">TET-STR-AMP-MA-ZOX-FEP-CHL-SUL</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Ni<sup>2+</sup>, Co<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-32</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">153</td>
<td valign="top" align="center">191</td>
<td valign="top" align="center">70</td>
<td valign="top" align="center">19</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">8</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1160</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">ENR-TET-STR-AMP-ZOX-SUL</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Co<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
<tr>
<td valign="top" align="left">MB-34</td>
<td valign="top" align="left">Market B</td>
<td valign="top" align="center">98</td>
<td valign="top" align="center">49</td>
<td valign="top" align="center">45</td>
<td valign="top" align="center">49</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">50</td>
<td valign="top" align="center">23</td>
<td valign="top" align="center">1786</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="center">-</td>
<td valign="top" align="left">TET-DOX-STR-AMP-CFZ-CHL-FLO</td>
<td valign="top" align="left">Zn<sup>2+</sup>, Cu<sup>2+</sup>, Cd<sup>2+</sup>, Ni<sup>2+</sup>, Co<sup>2+</sup>, Cr<sup>2+</sup></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>Newly identified STs are shown in boldface type. AMP, ampicillin; CFZ, cefazolin; CHL, chloramphenicol; CIP, ciprofloxacin; DOX, doxycycline; ENR, enrofloxacin; FEP, cefepime; FLO, florfenicol; IPM, imipenem; MA, cefamandole; NFX, norfloxacin; NIT, nitrofurantoin; POL, polymyxin B; STR, streptomycin; SUL, sulfisoxazole; SXT, trimethoprim&#x2013;sulfamethoxazole; TET, tetracycline; ZOX, ceftizoxime.</italic></attrib>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="S3.SS7">
<title>Integron Analysis</title>
<p>Integrons were examined in all 90 <italic>V. parahaemolyticus</italic> isolates. We found that eight isolates (8.89%) harbored class 1 integrons, but no class 2 or 3 integrons were detected. Of the 8 class 1 integron-positive isolates, 4 (11.11%) were recovered from 36 MDR isolates, 3 (9.68%) were recovered from 31 MHMR isolates, and 2 (11.11%) were recovered from 18 MDR and MHMR isolates. No isolates contained GCs. Correlation analysis showed that neither MDR (<italic>P</italic> = 0.550; <italic>R</italic> = 0.192) nor MHMR (<italic>P</italic> = 0.990; <italic>R</italic> = 0.004) was significantly correlated with the carrying of <italic>V. parahaemolyticus</italic> class 1 integrons.</p>
</sec>
</sec>
<sec id="S4">
<title>Discussion</title>
<p>The occurrence of <italic>V. parahaemolyticus</italic> in aquatic samples has raised increasing concern worldwide, as this organism is one of the leading nationwide causes of food-derived bacterial poisoning in humans (<xref ref-type="bibr" rid="B12">Elmahdi et al., 2016</xref>; <xref ref-type="bibr" rid="B68">Zhao et al., 2020</xref>). In our study, only 3 <italic>V. parahaemolyticus</italic> isolates were detected from 90 samples of freshwater <italic>P. vannamei</italic> cultured at farm A, where the water salinity was as low as 1.75 &#x00B1; 0.03 ppt. One possible reason for such a low occurrence of <italic>V. parahaemolyticus</italic> isolates is that, within a limited optimal temperature range, water salinity is a driver of <italic>V. parahaemolyticus</italic> levels (<xref ref-type="bibr" rid="B69">Zimmerman et al., 2007</xref>). As a halophilic bacterium, the survival of <italic>V. parahaemolyticus</italic> in freshwater ecosystems has been shown to be transient and dependent on the biological host (<xref ref-type="bibr" rid="B41">Nair et al., 2007</xref>). Freshwater cultured <italic>P. vannamei</italic> requires multiple gradients to slowly acclimate seedlings to reduced salinity (<xref ref-type="bibr" rid="B44">Peng et al., 2019</xref>), and during this process <italic>V. parahaemolyticus</italic> cannot be completely eliminated. However, 20 (22.22%) <italic>V. parahaemolyticus</italic> isolates were found at market A, where freshwater <italic>P. vannamei</italic> cultured at farm A is sold and the water salinity of market A is low, too. Previously, the presence of <italic>V. parahaemolyticus</italic> in freshwater samples from markets was attributed to cross-contamination due to mishandling at fishmongers&#x2019; stalls (<xref ref-type="bibr" rid="B41">Nair et al., 2007</xref>). Because the surrounding environment of markets is quite complex, some <italic>V. parahaemolyticus</italic> isolates may have been transmitted from the surrounding marine food in the market via human contact, water sources, or other animals. In addition, prevalence rates of <italic>V. parahaemolyticus</italic> were found to be 34.44% at seawater farm B and 40.00% at market B, where <italic>P. vannamei</italic> cultured at farm B is sold, which is consistent with previous studies that assessed marine products in China (<xref ref-type="bibr" rid="B61">Xu et al., 2016</xref>; <xref ref-type="bibr" rid="B58">Xie et al., 2017</xref>). In our study, water salinity varied over a wide range and was low at farm A and market A but was high at farm B and market B. On the one hand, <italic>P. vannamei</italic> is euryhaline and can tolerate salinity ranging from 1 to 50 ppt (<xref ref-type="bibr" rid="B23">Jaffer et al., 2020</xref>). On the other hand, in order to keep <italic>P. vannamei</italic> alive and fresh, water salinity at markets should be similar to that at the farm where the <italic>P. vannamei</italic> was cultured. Similarly, a suitable temperature and pH value should be maintained and an aerator used, as consumers at Asian markets prefer live shrimp to dead shrimp (<xref ref-type="bibr" rid="B62">Xu et al., 2019</xref>).</p>
<p>As previously described, the hemolysin markers <italic>tdh</italic> and <italic>trh</italic> play a significant role in the pathogenesis of human infections (<xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>). In the present study, the <italic>tdh</italic> gene was detected at slightly higher levels, whereas the <italic>trh</italic> gene was detected at lower levels, than those reported in previous studies (<xref ref-type="bibr" rid="B58">Xie et al., 2017</xref>; <xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>). However, other studies reported detecting no virulence genes in aquatic products (<xref ref-type="bibr" rid="B19">Han et al., 2007</xref>; <xref ref-type="bibr" rid="B46">Raghunath et al., 2008</xref>; <xref ref-type="bibr" rid="B61">Xu et al., 2016</xref>). The distribution of <italic>tdh</italic>- and <italic>trh</italic>-positive isolates may vary depending on the sample source, the detection technique, and the geographical origin (<xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>). It has been reported that clinical isolates have higher rates of virulence genes than isolates from aquatic products, which may be due to environmental factors such as interactions with other hosts and the evolution of pathogens (<xref ref-type="bibr" rid="B32">Letchumanan et al., 2015</xref>; <xref ref-type="bibr" rid="B58">Xie et al., 2017</xref>). Additionally, <italic>tdh</italic>-positive isolates are more virulent than <italic>trh</italic>-positive isolates (<xref ref-type="bibr" rid="B26">Kang et al., 2018</xref>). In our study, none of the isolates from markets A and B were positive for <italic>tdh</italic>, which may represent a reduced risk for serious infections for consumers.</p>
<p>Antibiotic susceptibility testing revealed that <italic>V. parahaemolyticus</italic> isolates were most resistant to ampicillin and streptomycin, with resistance rates of 76.67 and 74.44%, respectively. These results are comparable to data obtained in other countries (<xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>). It has been reported that the prevalence of ampicillin and streptomycin resistance is very high in <italic>V. parahaemolyticus</italic> from both clinics and aquatic products (<xref ref-type="bibr" rid="B57">Wong et al., 2012</xref>; <xref ref-type="bibr" rid="B58">Xie et al., 2017</xref>; <xref ref-type="bibr" rid="B49">Silva et al., 2018</xref>). This may be due to the extensive use of these antibiotics in aquaculture and antimicrobial residues in aquatic systems (<xref ref-type="bibr" rid="B52">Tan et al., 2017</xref>). In addition, compared with gram-positive species, gram-negative bacteria are intrinsically less permeable, which may allow them to resist certain antibiotics, as their outer membrane forms a permeability barrier (<xref ref-type="bibr" rid="B4">Blair et al., 2015</xref>).</p>
<p>Tetracycline, ciprofloxacin, chloramphenicol, trimethoprim&#x2013;sulfamethoxazole, and cephalosporin are first-line drugs used in the clinical treatment of <italic>V. parahaemolyticus</italic> infections and were tested in the present study (<xref ref-type="bibr" rid="B59">Xie et al., 2016</xref>; <xref ref-type="bibr" rid="B52">Tan et al., 2017</xref>; <xref ref-type="bibr" rid="B64">Yang et al., 2017</xref>; <xref ref-type="bibr" rid="B40">Mok et al., 2019</xref>). Our findings showed that 57.78, 57.78, and 64.44% of isolates were resistant to tetracycline, chloramphenicol, and trimethoprim&#x2013;sulfamethoxazole, respectively, which is much higher than rates reported by other studies in several countries and for several sample sources (<xref ref-type="bibr" rid="B65">Yano et al., 2011</xref>; <xref ref-type="bibr" rid="B43">Ottaviani et al., 2013</xref>; <xref ref-type="bibr" rid="B52">Tan et al., 2017</xref>). However, none of our isolates demonstrated resistance to ciprofloxacin, indicating that this antibiotic is still highly effective against <italic>V. parahaemolyticus</italic> and can continue to be recommended as a therapeutic drug. Additionally, <italic>V. parahaemolyticus</italic> isolates in the present study were highly resistant to first- and second-generation cephalosporins (cefazolin, 25.56%; cefamandole, 18.89%); however, fewer than 5% of isolates were resistant to third- and fourth-generation cephalosporins (ceftizoxime, 4.44%; cefepime, 3.33%). This suggests that first- and second-generation cephalosporins may have been misused in the past decades, leading to reduced susceptibility and lower efficiency in the treatment of <italic>V. parahaemolyticus</italic> (<xref ref-type="bibr" rid="B67">Yu et al., 2016</xref>). However, the accumulation of third- and fourth-generation cephalosporins in the environment and resulting drug resistance may occur more slowly, and the small number of cases of drug resistance reported in the present study indicates potential future risks. Moreover, high resistance to third-generation cephalosporins has previously been reported in <italic>V. parahaemolyticus</italic> from shrimp in Malaysia, another Asian country (<xref ref-type="bibr" rid="B29">Letchumanan et al., 2019a</xref>). In addition, extended-spectrum &#x03B2;-lactamases (ESBLs) confer resistance to a broad range of &#x03B2;-lactams, including third- and fourth-generation cephalosporins, which are commonly found in <italic>Enterobacteriaceae</italic> (<xref ref-type="bibr" rid="B54">Tetens et al., 2019</xref>). However, recently, some studies found that the prevalence of ESBL genes varied among new generation &#x03B2;-lactam-resistant <italic>Vibrio</italic> sp. isolates (<xref ref-type="bibr" rid="B5">Bush and Fisher, 2011</xref>; <xref ref-type="bibr" rid="B9">Dahanayake et al., 2019</xref>). Thus, potential ESBL-mediated cephalosporin resistance mechanisms of <italic>V. parahaemolyticus</italic> should be further researched.</p>
<p>Antibiotics are widely used in aquaculture to control bacterial infections and promote the growth of aquatic organisms. Some of the antibiotics tested in our study, including chloramphenicol, norfloxacin, and nitrofurantoin, have already been banned in food-producing animals in China<sup><xref ref-type="fn" rid="footnote4">4</xref></sup> <sup>,<xref ref-type="fn" rid="footnote5">5</xref></sup>. In the present study, none of the <italic>V. parahaemolyticus</italic> isolates demonstrated resistance to norfloxacin or nitrofurantoin. Interestingly, we observed high rates of resistance to chloramphenicol (57.78% overall), which has been banned in food-producing animals since 2002. Moreover, a high rate of resistance (53.33% overall) to florfenicol, a fluorinated derivative of chloramphenicol that is widely used to treat aquatic infections in many countries including China, Brazil, and the United States (<xref ref-type="bibr" rid="B63">Yang et al., 2020</xref>), was also observed in our study. We found similar results in our previous study of <italic>E. coli</italic> isolates from <italic>P. vannamei</italic> (<xref ref-type="bibr" rid="B7">Cheng et al., 2019</xref>). Homology analysis revealed that the sequence of the florfenicol resistance gene <italic>floR</italic> had 55% homology with the sequence of the chloramphenicol resistance gene <italic>cmlA</italic>, both of which are efflux transporters belonging to the major facilitator superfamily (<xref ref-type="bibr" rid="B25">Kadlec et al., 2007</xref>; <xref ref-type="bibr" rid="B14">Fang et al., 2019</xref>). Thus, we hypothesize that high levels of resistance to chloramphenicol may be related to the use of florfenicol (<xref ref-type="bibr" rid="B66">Yassin et al., 2017</xref>). Additionally, although the use of doxycycline, enrofloxacin, and sulfisoxazole is permitted in the aquaculture industry in China<sup><xref ref-type="fn" rid="footnote6">6</xref></sup>, some <italic>V. parahaemolyticus</italic> isolates in our study were resistant to these antibiotics.</p>
<p>Finally, polymyxin B and imipenem are two special antibiotics tested in our study. Polymyxins, including polymyxin B and polymyxin E, have broad-spectrum activity against gram-negative bacteria but are typically considered last-resort antibiotics to treat severe infections caused by MDR isolates (<xref ref-type="bibr" rid="B34">Liu et al., 2016</xref>). Imipenem belongs to the carbapenem class of &#x03B2;-lactams, has a very broad spectrum of activity, and acts mostly on gram-negative and gram-positive bacteria (<xref ref-type="bibr" rid="B7">Cheng et al., 2019</xref>). Fortunately, none of the <italic>V. parahaemolyticus</italic> isolates in our study exhibited resistance to these two special antibiotics. However, other studies have reported resistance of <italic>Vibrio</italic> sp. to polymyxin B and imipenem. Misuse of polymyxins and carbapenem may have a negative impact on the clinical treatment of <italic>Vibrio</italic> infections in the future (<xref ref-type="bibr" rid="B10">Devi et al., 2009</xref>; <xref ref-type="bibr" rid="B28">Lee et al., 2018</xref>).</p>
<p>MDR isolates were commonly observed in our study (40.00% overall), which is consistent with findings in previous studies (<xref ref-type="bibr" rid="B61">Xu et al., 2016</xref>; <xref ref-type="bibr" rid="B64">Yang et al., 2017</xref>). There are many possible reasons for the existence of MDR <italic>V. parahaemolyticus</italic> isolates, including the excessive use of antibiotics for prophylactic use, therapeutic use, or as antimicrobial growth promoters within the aquaculture industry (<xref ref-type="bibr" rid="B58">Xie et al., 2017</xref>). The widespread use of antibiotics in clinics, agriculture, and livestock production can result in antibiotic residues entering the environment (<xref ref-type="bibr" rid="B52">Tan et al., 2017</xref>), and the exchange of genetic resistance determinants between different environments can occur via direct or indirect contact or via MGEs (<xref ref-type="bibr" rid="B14">Fang et al., 2019</xref>). Therefore, non-antibiotic approaches are required to manage the occurrence of antibiotic resistance among <italic>Vibrio</italic> sp. in the environment (<xref ref-type="bibr" rid="B28">Lee et al., 2018</xref>). Phages are approved and recognized by US regulatory bodies as potential biocontrol agents to control and inhibit pathogens, including <italic>Vibrio</italic> sp. (<xref ref-type="bibr" rid="B31">Letchumanan et al., 2016</xref>, <xref ref-type="bibr" rid="B30">2019b</xref>). Phages pose significant advantages, such as being environmentally friendly and easily discoverable in the environment and having greater host specificity and cost effectiveness than antibiotics (<xref ref-type="bibr" rid="B31">Letchumanan et al., 2016</xref>). In addition, some probiotics are possible substitutes for antibiotics against <italic>Vibrio</italic> sp. <xref ref-type="bibr" rid="B53">Tan et al. (2020)</xref> identified bioactive compounds with anti-<italic>Vibrio</italic> activity from <italic>Streptomyces</italic> sp. that will be of immense value for the future development of antibacterial agents.</p>
<p>It has been reported that, owing to its unique geographical environment and the rapid expansion of aquacultural, industrial, and agricultural activities, the Zhejiang nearshore area has already suffered heavy metal contamination (<xref ref-type="bibr" rid="B33">Liang et al., 2019</xref>). Moreover, heavy metal resistance has been observed in <italic>Vibrio</italic> sp. isolated from aquatic products and the environment in many neighboring provinces of Zhejiang (<xref ref-type="bibr" rid="B20">He et al., 2016</xref>, <xref ref-type="bibr" rid="B21">2019</xref>; <xref ref-type="bibr" rid="B22">Hu and Chen, 2016</xref>). Some of the heavy metals tested in this study, such as Cu, Zn, Ni, Co, and Cr, are essential micronutrients for bacteria at low concentrations. However, concentrations of such metals above threshold levels, as well as the long-term presence of potentially toxic metals (e.g., Cd in our study), adversely affect the functioning and diversity of microbial communities, which may eventually result in some bacteria developing resistance to heavy metals via complex formation or sequestration of toxic metals, detoxification through reduction of intracellular ions, or extrusion of toxic ions by efflux systems (<xref ref-type="bibr" rid="B36">L&#x00F3;pez-Maury et al., 2002</xref>; <xref ref-type="bibr" rid="B39">Matyar et al., 2008</xref>; <xref ref-type="bibr" rid="B48">Seiler and Berendonk, 2012</xref>; <xref ref-type="bibr" rid="B13">Etesami, 2018</xref>). In addition, <italic>V. parahaemolyticus</italic> isolates derived from different shrimp sources had similar heavy metal resistance profiles. The results indicated that the sample source did not appear to greatly impact the heavy metal resistance profiles of <italic>V. parahaemolyticus</italic> isolates, which was also reported in a previous study (<xref ref-type="bibr" rid="B20">He et al., 2016</xref>). One possible reason is that industrial pollution may influence the aquaculture environment, as pollutants (e.g., heavy metals) concentrated in the region have a relatively significant impact on certain species and microbes.</p>
<p>In our study, MDR and MHMR were found to be positively correlated. It has been reported that industrial pollutants such as heavy metals may enhance selection for antibiotic resistance and vice versa. One possible reason for this is that metal cations are common environmental stressors that perturb bacteria, activating metal-protective stress responses and growth states that also protect against and provide resistance to antibiotics (<xref ref-type="bibr" rid="B22">Hu and Chen, 2016</xref>; <xref ref-type="bibr" rid="B45">Poole, 2017</xref>). Additionally, coselection or the coexistence of certain antibiotic resistance genes and heavy metal resistance genes may be beneficial to bacteria for increasing fitness in various environments. Importantly, 18 <italic>V. parahaemolyticus</italic> isolates that were both MDR and MHMR were resistant to Zn<sup>2 +</sup> and 17 of them were resistant to Cu<sup>2 +</sup>, although their antibiotic and heavy metal resistance profiles were different. Moreover, resistance to ampicillin (94.44%, 17/18), tetracycline (88.89%, 16/18), enrofloxacin (83.33%, 15/18), and streptomycin (66.67%, 12/18) occurred frequently in the 18 isolates. There is a growing body of evidence that Cu/Zn drives antibiotic resistance in metal-exposed bacteria owing to the selection of genetic elements harboring both antibiotic and metal resistance genes and to the recruitment of antibiotic resistance mechanisms by metals. Moreover, Cu<sup>2+</sup> and Zn<sup>2+</sup> can bind to certain classes of antibiotics (e.g., the &#x03B2;-lactams, aminoglycosides, tetracyclines, and quinolones tested in this study) to form complexes and hinder antibiotic activity (<xref ref-type="bibr" rid="B45">Poole, 2017</xref>). In any case, increases in MHMR and MDR in aquatic products play a crucial role in the food chain and may pose important public health problems (<xref ref-type="bibr" rid="B39">Matyar et al., 2008</xref>).</p>
<p>Similar to many previous studies, the STs of the <italic>V. parahaemolyticus</italic> isolates in our study were diverse, and most isolates represented novel STs, indicating a high degree of genomic diversity and suggesting that dissemination of MDR and MHMR genes of <italic>V. parahaemolyticus</italic> isolates from <italic>P. vannamei</italic> samples may be effected by MGEs via horizontal gene transfer (HGT) (<xref ref-type="bibr" rid="B59">Xie et al., 2016</xref>; <xref ref-type="bibr" rid="B35">Lopatek et al., 2018</xref>; <xref ref-type="bibr" rid="B64">Yang et al., 2017</xref>; <xref ref-type="bibr" rid="B24">Jiang et al., 2019</xref>). Although they are among the most important and common MGEs implicated in the dissemination and distribution of resistance genes between isolates (<xref ref-type="bibr" rid="B14">Fang et al., 2019</xref>), fewer than 10% of all isolates in the present study carried class 1 integrons, and correlation analysis showed that neither MDR nor MHMR were significantly correlated with the carrying of <italic>V. parahaemolyticus</italic> class 1 integrons.</p>
<p>Previous research indicated that the dissemination of antibiotic and heavy metal resistance determinants may be a result of HGT, resulting in the increased prevalence of MGEs in marine aquaculture environments (<xref ref-type="bibr" rid="B47">Rodriguez-Blanco et al., 2012</xref>). Among the various MGEs, class 1 integrons are thought to be strictly associated with coselection mechanisms, and harboring the class 1 integron gene can be highly beneficial for bacterial fitness (<xref ref-type="bibr" rid="B16">Gillings et al., 2015</xref>; <xref ref-type="bibr" rid="B11">Di Cesare et al., 2016</xref>). However, inconsistent with the high prevalence of MDR and MHMR, only a few class 1 integrons were detected among the isolates tested in this study. Similar results have been reported showing that antimicrobial resistance is not related to class 1, 2, or 3 integrons in <italic>Vibrio</italic> sp. isolated from seawater samples in Lima, Peru (<xref ref-type="bibr" rid="B51">Sulca et al., 2018</xref>). In addition, other studies have also shown a low prevalence of other MGEs, such as plasmids and integrative and conjugative elements (ICEs), in <italic>V. parahaemolyticus</italic> isolates from seafood in certain provinces in China (<xref ref-type="bibr" rid="B22">Hu and Chen, 2016</xref>; <xref ref-type="bibr" rid="B21">He et al., 2019</xref>). Thus, <italic>V. parahaemolyticus</italic> in aquatic species may have adopted other molecular mechanisms that mediate the high prevalence of resistance determinants, and this requires further study (<xref ref-type="bibr" rid="B22">Hu and Chen, 2016</xref>).</p>
</sec>
<sec id="S5">
<title>Conclusion</title>
<p>In conclusion, the results of the present study indicate that <italic>V. parahaemolyticus</italic> occurs in <italic>P. vannamei</italic> from both farms and markets regardless of whether it is freshwater-cultured or seawater-cultured. Few <italic>V. parahaemolyticus</italic> isolates were found to carry the <italic>tdh</italic> (4.44%) or <italic>trh</italic> (3.33%) toxicity genes. However, MDR isolates (40.00%) and MHMR isolates (34.44%) were commonly observed. MDR and MHMR were found to be positively correlated using Pearson&#x2019;s correlation analysis (<italic>P</italic> = 0.004; <italic>R</italic> = 0.759). Most of the <italic>V. parahaemolyticus</italic> isolates represented new STs, which indicates high diversity among the isolates. However, correlation analysis revealed that neither MDR (<italic>P</italic> = 0.550; <italic>R</italic> = 0.192) nor MHMR (<italic>P</italic> = 0.990; <italic>R</italic> = 0.004) were significantly correlated with class 1 integrons in <italic>V. parahaemolyticus</italic>. Combined with the results of other studies, our findings suggest that <italic>V. parahaemolyticus</italic> in aquatic species may have adopted other molecular mechanisms that lead to the high prevalence of resistance determinants, and future research should focus on elucidating these mechanisms. The results of this study provide data to support aquatic animal health management and food safety risk assessments in the aquaculture industry.</p>
</sec>
<sec id="S6">
<title>Data Availability Statement</title>
<p>The datasets generated for this study can be found in the <ext-link ext-link-type="uri" xlink:href="https://pubmlst.org/vparahaemolyticus">https://pubmlst.org/vparahaemolyticus</ext-link>, 12 novel STs (2217-2228).</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>HJ completed MLST analysis and all data analysis and prepared the manuscript. TY, YY, and SY completed virulence gene detection, antibiotic and heavy metal resistance testing, and integron class and gene cassette detection. JW, RL, and YL completed <italic>P. vannamei</italic> sampling and <italic>V. parahaemolyticus</italic> isolation and identification. JF and CZ designed the project and revised the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This research was supported by the National Natural Science Foundation of China under Grant Nos. 31901792 and 31801655 and the Zhejiang Provincial Natural Science Foundation of China under Grant No. LQ18C200004.</p>
</fn>
</fn-group>
<ref-list>
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