Frontiers in Microbiomes | New and Recent Articles https://www.frontiersin.org/journals/microbiomes RSS Feed for Frontiers in Microbiomes | New and Recent Articles en-us Frontiers Feed Generator,version:1 2026-10-13T03:40:20.150+00:00 60 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1975060 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1975060 <![CDATA[Dietary, lifestyle, and host determinants of microbiota-host interactions]]> 2026-10-08T00:00:00Z Review Alma Haydee Astorga GaxiolaLuis Martin Sánchez MagañaLiliana León LópezCuauhtémoc Reyes MorenoSaraid Mora Rochín https://www.frontiersin.org/articles/10.3389/frmbi.2026.1900716 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1900716 <![CDATA[Cervico-vaginal microbiota and antimicrobial resistance patterns in relation to different reproductive statuses in cattle: a field study from Nepal]]> 2026-10-05T00:00:00Z Original Research Bishal BhattachanGokarna GautamRabin RautHom Bahadur BasnetBibek BhattachanSundar KhatiwadaRebanta Kumar Bhattarai 3 in cervicitis, Filifactor (LDA score > 2) in repeat breeding cow, and Histophilus (LDA score > 3.5) in healthy heifers. These findings offer important insights into the structure of bovine vaginal microbial communities while highlighting the urgent need to monitor antimicrobial resistance. This study lays the groundwork for defining the core vaginal microbiota and its potential implications for reproductive health and disease. To the best of our knowledge, this is the first study in Nepal to investigate cervico-vaginal microbiota and antimicrobial resistance patterns in cattle across different reproductive statuses using both culture-dependent methods and 16S rRNA gene sequencing.]]> https://www.frontiersin.org/articles/10.3389/frmbi.2026.1905698 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1905698 <![CDATA[Molecular screening for Wolbachia endosymbionts in phlebotomine sand flies within the North Central Province, Sri Lanka]]> 2026-10-01T00:00:00Z Original Research F. B. R. P. KumaraD. K. HettiarachchiN. D. A. D. Wijegunawardana https://www.frontiersin.org/articles/10.3389/frmbi.2026.1942228 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1942228 <![CDATA[The gut-brain axis in Alzheimer’s and Parkinson’s diseases: a comparative perspective]]> 2026-09-30T00:00:00Z Mini Review Riddhi UpadhyayChandhini C.Susmita KarSajith SathyamoorthyXavier PitchaimuthuMurugan Sevanan https://www.frontiersin.org/articles/10.3389/frmbi.2026.1946255 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1946255 <![CDATA[Urban land use influences microbial functional traits along a management intensity gradient]]> 2026-09-30T00:00:00Z Original Research Fadwa KhalfallahNicolas LegaySebastien BonthouxAmélie A. M. CantarelJean-Christophe ClementArnaud FoulquierCatherine JoulianXavier Le RouxAgnès RichaumeMarie-Paule NoriniJennifer Harris https://www.frontiersin.org/articles/10.3389/frmbi.2026.1906484 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1906484 <![CDATA[Decoding host–microbiome interactions through integrative multi-omics and artificial intelligence: from biological mechanisms to predictive modelling]]> 2026-09-28T00:00:00Z Review Gayatri Krishna S.Narchikundil ReejaShemmy SadanandanBhagya MappurathAkash ChatterjeeGinny AntonyTony Grace https://www.frontiersin.org/articles/10.3389/frmbi.2026.1871476 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1871476 <![CDATA[Structured succession of a cross-kingdom microbiome drives degradation and detoxification of oolong tea waste]]> 2026-09-24T00:00:00Z Original Research Guanming YeXiaoqing YuMarsena Jasiel IsmaiahRen KeZiheng ZengJiarui WangShuning LanHan YuHuiyu LiuShanyu XieKin Sum LeungLu ZhangJetty Chung-Yung LeeOlivier Habimana https://www.frontiersin.org/articles/10.3389/frmbi.2026.1901989 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1901989 <![CDATA[Gut microbiome modulation by diet and lifestyle in kidney stone disease and autism spectrum disorder: emerging mechanisms and translational prospects]]> 2026-09-22T00:00:00Z Mini Review Girish B. Mahajan https://www.frontiersin.org/articles/10.3389/frmbi.2026.1965017 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1965017 <![CDATA[Correction: Modulation of the rumen microbiome and metabolism in dairy cows by altering the concentrate feeding pattern and the inclusion of Saccharomyces cerevisiae yeast]]> 2026-09-18T00:00:00Z Correction Timothy J. SnellingCatherine A. JohnsonHelen E. WarrenJules Taylor-PickardJames A. HuntingtonLiam A. Sinclair https://www.frontiersin.org/articles/10.3389/frmbi.2026.1953547 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1953547 <![CDATA[Menopause-associated gut microbiome remodeling and pharmacomicrobiomics: emerging mechanisms influencing drug response]]> 2026-09-15T00:00:00Z Mini Review Susanne B. Haga https://www.frontiersin.org/articles/10.3389/frmbi.2026.1867961 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1867961 <![CDATA[Integrated microbial and endocrine signatures of obesity: Enterobacteriaceae alterations, hormonal profiles, and dietary correlates in adult males]]> 2026-09-09T00:00:00Z Original Research Ranjeet Kumar VishwakarmaBhupendra Singh YadavPriyanka GautamMinakshi SahuGopal Nath https://www.frontiersin.org/articles/10.3389/frmbi.2026.1897965 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1897965 <![CDATA[Compound microbial intelligent membrane fermentation reshapes the virome and reduces various resistance genes in duck litter]]> 2026-09-07T00:00:00Z Original Research Tiecheng SunGuiheng MeiJunru MoMeiqin LiYanmei MaMengshi ZhaoSong PengFengqiang LinJilong ChenYaxiong MaZhaolong Li https://www.frontiersin.org/articles/10.3389/frmbi.2026.1903806 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1903806 <![CDATA[The circulating metatranscriptome in acute myeloid leukemia patients: an RNA-seq reanalysis]]> 2026-09-03T00:00:00Z Brief Research Report An Dinh Duy NguyenRoshan KernTatiana DombrovskiThomas LaFramboise https://www.frontiersin.org/articles/10.3389/frmbi.2026.1883079 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1883079 <![CDATA[Host identity dominates over intra-ruminal spatial variation in shaping the rumen microbiome of Holstein–Friesian dairy cows]]> 2026-08-31T00:00:00Z Brief Research Report Soumya Kanti KarEdoardo ZaccariaLéon ŠebekSanne van Gastelen https://www.frontiersin.org/articles/10.3389/frmbi.2026.1881416 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1881416 <![CDATA[Endophyte-mediated pest resistance: mechanisms, evidence gaps, and translational opportunities]]> 2026-08-24T00:00:00Z Review Soumik Dey RoyDebamitra ChatterjeeRitika ThakurSwarnali BhattacharyaAjoy Kumar MukhopadhyayPalash MondalAniruddha PramanikHirak Chatterjee https://www.frontiersin.org/articles/10.3389/frmbi.2026.1825540 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1825540 <![CDATA[A generalized supervised contrastive learning framework for integrative multi-omics prediction models]]> 2026-08-13T00:00:00Z Original Research Sen YangShidan WangYiqing WangRuichen RongBo LiAndrew Y. KohGuanghua XiaoQiwei LiDajiang LiuXiaowei Zhan https://www.frontiersin.org/articles/10.3389/frmbi.2026.1855343 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1855343 <![CDATA[Enhancing cow manure composting via staged inoculation of functional microbial consortia]]> 2026-08-11T00:00:00Z Original Research Huanyao LiWeimin ZengJin HuangShiyong Tan https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884444 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884444 <![CDATA[Modulation of the rumen microbiome and metabolism in dairy cows by altering the concentrate feeding pattern and the inclusion of Saccharomyces cerevisiae yeast]]> 2026-08-07T00:00:00Z Original Research Timothy J. SnellingCatherine A. JohnsonHelen E. WarrenJules Taylor-PickardJames A. HuntingtonLiam A. Sinclair 0.05) on the dry matter intake, milk yield, or composition. CA did not affect the rumen NH3–N and VFA concentrations (p > 0.05). YS inclusion tended to increase the rumen pH (p = 0.088), acetate (p = 0.076), and valerate (p = 0.091). YS significantly increased the total VFA (p = 0.033) and propionate concentrations (p < 0.016). CA had little overall effect on the rumen microbiome beta diversity. However, there was a reduction in the relative abundance of a Prevotellaceae feature associated with an uneven pattern of CA. Bray–Curtis clustering of the microbiome was observed with YS (p = 0.002), driven by a decrease of Gammaproteobacteria and Prevotellaceae features and an increase of a Christensenellaceae feature (LDA > 2.0).]]> https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884781 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884781 <![CDATA[Decoding the rhizosphere microbiome against Sclerotium rolfsii: integrating multi-omics and AI-driven predictive models]]> 2026-08-05T00:00:00Z Review Arpita DasPraveen BoddanaPriyanka PaulPadripta BanerjeeSiddhartha Das https://www.frontiersin.org/articles/10.3389/frmbi.2026.1872481 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1872481 <![CDATA[From cooperation to collapse: the diet-microbiota-host gene triad in disease and aging]]> 2026-07-31T00:00:00Z Review Shreya BhattacharjeeArnab Mukhopadhyay