Frontiers in Microbiomes | New and Recent Articles https://www.frontiersin.org/journals/microbiomes RSS Feed for Frontiers in Microbiomes | New and Recent Articles en-us Frontiers Feed Generator,version:1 2026-08-18T10:36:31.790+00:00 60 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1825540 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1825540 <![CDATA[A generalized supervised contrastive learning framework for integrative multi-omics prediction models]]> 2026-08-13T00:00:00Z Original Research Sen YangShidan WangYiqing WangRuichen RongBo LiAndrew Y. KohGuanghua XiaoQiwei LiDajiang LiuXiaowei Zhan https://www.frontiersin.org/articles/10.3389/frmbi.2026.1855343 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1855343 <![CDATA[Enhancing cow manure composting via staged inoculation of functional microbial consortia]]> 2026-08-11T00:00:00Z Original Research Huanyao LiWeimin ZengJin HuangShiyong Tan https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884444 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884444 <![CDATA[Modulation of the rumen microbiome and metabolism in dairy cows by altering the concentrate feeding pattern and the inclusion of Saccharomyces cerevisiae yeast]]> 2026-08-07T00:00:00Z Original Research Timothy J. SnellingCatherine A. JohnsonHelen E. WarrenJules Taylor-PickardJames A. HuntingtonLiam A. Sinclair 0.05) on the dry matter intake, milk yield, or composition. CA did not affect the rumen NH3–N and VFA concentrations (p > 0.05). YS inclusion tended to increase the rumen pH (p = 0.088), acetate (p = 0.076), and valerate (p = 0.091). YS significantly increased the total VFA (p = 0.033) and propionate concentrations (p < 0.016). CA had little overall effect on the rumen microbiome beta diversity. However, there was a reduction in the relative abundance of a Prevotellaceae feature associated with an uneven pattern of CA. Bray–Curtis clustering of the microbiome was observed with YS (p = 0.002), driven by a decrease of Gammaproteobacteria and Prevotellaceae features and an increase of a Christensenellaceae feature (LDA > 2.0).]]> https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884781 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884781 <![CDATA[Decoding the rhizosphere microbiome against Sclerotium rolfsii: integrating multi-omics and AI-driven predictive models]]> 2026-08-05T00:00:00Z Review Arpita DasPraveen BoddanaPriyanka PaulPadripta BanerjeeSiddhartha Das https://www.frontiersin.org/articles/10.3389/frmbi.2026.1872481 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1872481 <![CDATA[From cooperation to collapse: the diet-microbiota-host gene triad in disease and aging]]> 2026-07-31T00:00:00Z Review Shreya BhattacharjeeArnab Mukhopadhyay https://www.frontiersin.org/articles/10.3389/frmbi.2026.1934327 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1934327 <![CDATA[Correction: Soil microbial communities shift in response to cropping sequence diversification with perennial seed crops]]> 2026-07-30T00:00:00Z Correction Newton Z. LupwayiNityananda KhanalMathew RichardsRodrigo Ortega Polo https://www.frontiersin.org/articles/10.3389/frmbi.2026.1881824 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1881824 <![CDATA[Placental and maternal microbiome adaptations in a preeclamptic-like mouse model]]> 2026-07-29T00:00:00Z Original Research Kalie F. BeckersChristopher J. SchulzJuliet P. FlanaganChin-Chi LiuGary W. ChildersIsabella N. FaulknerJenny L. Sones 0.05). Microbial composition analysis showed site-specific variations at the phylum and genus levels with Firmicutes and Bacteroidetes being dominant across all sites. BPH/5 placentas were enriched in Alistipes, Lachnospiraceae_NK4A136 and Helicobacter. In contrast, C57 placentas were enriched in Alistipes, Lachnospiraceae_NK4A136, and Lactobacillus suggesting strain-specific microbial alterations with common genera between maternal oral, fecal, vaginal, and placental communities.DiscussionThese findings demonstrate that the placental microbial signatures are unique in a PE-like mouse model. Further studies are needed to elucidate the functional impact of these microbial differences on maternal and fetal PE outcomes.]]> https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884540 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1884540 <![CDATA[Gut microbiota signatures differentiate trajectory-defined response phenotypes and predict self-management outcomes in irritable bowel syndrome]]> 2026-07-29T00:00:00Z Original Research Jie ChenAolan LiWeizi WuWanli XuTingting ZhaoAngela R. StarkweatherLeonel RodriguezMing-Hui ChenXiaomei S. Cong https://www.frontiersin.org/articles/10.3389/frmbi.2026.1750320 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1750320 <![CDATA[Perinatal antibiotics in a db/db mouse model impact obesity and hyperglycemia in a microbiome-dependent manner]]> 2026-07-27T00:00:00Z Original Research Noelle Curtis-JosephAudra LaubiMelanie Ortiz-Alvarez de la CampaPeter Belenky https://www.frontiersin.org/articles/10.3389/frmbi.2026.1932978 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1932978 <![CDATA[Correction: Altered early-life gut microbiota in offspring of pregnancies complicated by CHD-associated pulmonary hypertension]]> 2026-07-27T00:00:00Z Correction Yiyang HanHaofeng ZhangJun Zhang https://www.frontiersin.org/articles/10.3389/frmbi.2026.1828981 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1828981 <![CDATA[Gut microbiome modulation for military resilience and performance]]> 2026-07-24T00:00:00Z Mini Review Emma F. MurphyIain TemplemanJoanna RimmerSarah V. Harding https://www.frontiersin.org/articles/10.3389/frmbi.2026.1847345 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1847345 <![CDATA[Functional genetic signatures of the gut microbiome in cardiometabolic diseases: mechanisms and translational opportunities]]> 2026-07-24T00:00:00Z Review Martin Nganga Muigano https://www.frontiersin.org/articles/10.3389/frmbi.2026.1834726 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1834726 <![CDATA[Shotgun metagenomic analysis reveals taxonomic and functional alterations in the gut microbiome across prodromal and symptomatic Lewy body disease]]> 2026-07-15T00:00:00Z Original Research Xiaowei ZhaoStuart J. McCarterVinod K. GuptaKiera M. GrantErik K. St. LouisKejal KantarciRodolfo SavicaMax HillHelen E. VuongChristopher StaleyBradley F. BoeveOwen A. RossLevi M. TeigenJaeyun Sung https://www.frontiersin.org/articles/10.3389/frmbi.2026.1866641 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1866641 <![CDATA[Synergistic interactions between biogenic organic matter and microbial dynamics during simulated senescent cyanobacterial blooms in freshwater mesocosms]]> 2026-07-13T00:00:00Z Original Research Noémie DechauxNina GuérinNajet ThineyKarine EscoubeyrouCharlotte DuvalSarah FioriniCharles-Hubert PaulinTarik MezianeEmma Rochelle-NewallCécile BernardJulie LeloupDominique Lamy https://www.frontiersin.org/articles/10.3389/frmbi.2026.1860559 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1860559 <![CDATA[Artificial intelligence in soil microbiome-driven agriculture: from practical limits to a translational roadmap]]> 2026-07-03T00:00:00Z Review Acharya BalkrishnaPriyanka ChaudharyShelly SinghAnishka SainiAditi KumariKhushi Ishika MahatoVedpriya Arya https://www.frontiersin.org/articles/10.3389/frmbi.2026.1832151 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1832151 <![CDATA[Nasal cavity microbial makeup and the influence on psychiatric symptoms following fire exposure in firefighters]]> 2026-06-23T00:00:00Z Original Research Paul GrunstedChao XuAmanda JanitzJessica ReeseJanis CampbellTasha M. Santiago-RodriguezSara J. Javornik CregeenJoseph F. PetrosinoJooyeon Hwang https://www.frontiersin.org/articles/10.3389/frmbi.2026.1820309 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1820309 <![CDATA[Variation in cloacal microbiota of Canada goose (Branta canadensis) across rural and urban areas in Illinois, USA]]> 2026-06-17T00:00:00Z Original Research Daniel B. RaudabaughSara Villazan Perez-GironesNelda A. RiveraTooba LatifEvan W. LondonNicole F. PietruntiWillian M. BrownNohra E. Mateus-PinillaAuriel M. V Fournier https://www.frontiersin.org/articles/10.3389/frmbi.2026.1863308 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1863308 <![CDATA[Fecal microbiota transplantation: from empirical remedy to precision medicine]]> 2026-06-17T00:00:00Z Review Junsheng ZhaoYiming FanKeda YangHainv Gao https://www.frontiersin.org/articles/10.3389/frmbi.2026.1904862 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1904862 <![CDATA[Correction: Fecal microbiota transplantation promotes gut microbiome recovery in pediatric hematopoietic stem cell transplant recipients]]> 2026-06-17T00:00:00Z Correction María Florencia FernandezAbigail StrickerAdriana BotteroLaura BusquetCarlos WaldbaumFabiana López MingoranceRaúl Martinez PatettaIgnacio ToerAna JuliáAndrea Mangano https://www.frontiersin.org/articles/10.3389/frmbi.2026.1779816 https://www.frontiersin.org/articles/10.3389/frmbi.2026.1779816 <![CDATA[Microbial community characterization of multi-crop growouts in the XROOTS aeroponic–hydroponic system on the International Space Station]]> 2026-06-15T00:00:00Z Original Research Christina L. M. KhodadadCory J. SpernMary E. HummerickJennifer L. GoodenCristiana J. MoralesRaymond M. WheelerOrlando MelendezRobert MorrowJohn WetzelYe Zhang