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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Mol. Biosci.</journal-id>
<journal-title>Frontiers in Molecular Biosciences</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Mol. Biosci.</abbrev-journal-title>
<issn pub-type="epub">2296-889X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">841223</article-id>
<article-id pub-id-type="doi">10.3389/fmolb.2022.841223</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Molecular Biosciences</subject>
<subj-group>
<subject>Mini Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Gut Microbiome and the Role of Metabolites in the Study of Graves&#x2019; Disease</article-title>
<alt-title alt-title-type="left-running-head">Liu et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Microbiome, Metabolome and Graves&#x2019; Disease</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Haihua</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1638690/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Huiying</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Chang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1130123/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Shang</surname>
<given-names>Mengxue</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wei</surname>
<given-names>Tianfu</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1040840/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yin</surname>
<given-names>Peiyuan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/901792/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Clinical Laboratory of Integrative Medicine</institution>, <institution>First Affiliated Hospital of Dalian Medical University</institution>, <addr-line>Dalian</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Institute of Integrative Medicine</institution>, <institution>Dalian Medical University</institution>, <addr-line>Dalian</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/13413/overview">Wolfram Weckwerth</ext-link>, University of Vienna, Austria</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/542796/overview">Thomas Kaiser</ext-link>, University of Minnesota Twin Cities, United&#x20;States</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Peiyuan Yin, <email>yinperry@126.com</email>, <email>yinpeiyuan@dm.edu.cn</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Metabolomics, a section of the journal Frontiers in Molecular Biosciences</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>02</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>9</volume>
<elocation-id>841223</elocation-id>
<history>
<date date-type="received">
<day>22</day>
<month>12</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>31</day>
<month>01</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Liu, Liu, Liu, Shang, Wei and Yin.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Liu, Liu, Liu, Shang, Wei and Yin</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>Graves&#x2019; disease (GD) is an autoimmune thyroid disease (AITD), which is one of the most common organ-specific autoimmune disorders with an increasing prevalence worldwide. But the etiology of GD is still unclear. A growing number of studies show correlations between gut microbiota and GD. The dysbiosis of gut microbiota may be the reason for the development of GD by modulating the immune system. Metabolites act as mediators or modulators between gut microbiota and thyroid. The purpose of this review is to summarize the correlations between gut microbiota, microbial metabolites and GD. Challenges in the future study are also discussed. The combination of microbiome and metabolome may provide new insight for the study and put forward the diagnosis, treatment, prevention of GD in the future.</p>
</abstract>
<kwd-group>
<kwd>graves&#x2019; disease (GD)</kwd>
<kwd>metabol(n)omics</kwd>
<kwd>gut microbiome</kwd>
<kwd>autoimmunity</kwd>
<kwd>metabolites</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Autoimmune thyroid disease (AITD) are common organ-specific autoimmune disorders with an increasing prevalence worldwide, which involves Hashimoto thyroiditis (HT) and GD (<xref ref-type="bibr" rid="B65">Moshkelgosha et&#x20;al., 2021</xref>). GD is caused by the autoantibodies of the thyrotropin receptor (TSHR), which leads to thyroid hyperplasia and hyperthyroidism (<xref ref-type="bibr" rid="B3">Bahn, 2003</xref>; <xref ref-type="bibr" rid="B34">Ishaq et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B93">Shi et&#x20;al., 2019a</xref>; <xref ref-type="bibr" rid="B65">Moshkelgosha et&#x20;al., 2021</xref>). Hyperthyroidism, fatigue, weight loss, tachycardia, and heat intolerance are common symptoms of GD. Approximately 50% of patients may develop Graves&#x2019; ophthalmopathy (GO), leading to eyelid retractions and exophthalmos (<xref ref-type="bibr" rid="B6">Byeon et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B112">Yan et&#x20;al., 2020</xref>). GD is the most common cause of 60&#x2013;80% of hyperthyroidism and influence about 0.5% of the general population (<xref ref-type="bibr" rid="B11">Cooper and Stroehla, 2003</xref>; <xref ref-type="bibr" rid="B96">Smith and Heged&#xfc;s, 2016</xref>; <xref ref-type="bibr" rid="B18">Ejtahed et&#x20;al., 2020</xref>). It frequently occurs in the population between 30 and 50&#xa0;years old. Resemble in other autoimmune diseases, the incidence of GD is higher in women than men, the ratio of about 5/1 (<xref ref-type="bibr" rid="B11">Cooper and Stroehla, 2003</xref>; <xref ref-type="bibr" rid="B37">Ji et&#x20;al., 20188</xref>; <xref ref-type="bibr" rid="B72">Nystr&#xf6;m et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B63">Menconi et&#x20;al., 2014</xref>). The risk factors of GD include genetic predisposition, environmental factors, immune factors (<xref ref-type="bibr" rid="B13">Covelli and Ludgate, 2017</xref>).</p>
<p>Hyperthyroidism is a common disease that is difficult to cure completely. Although modern medicine has brought great changes to the prevention, diagnosis, and treatment of autoimmune diseases, the etiology and pathogenesis of these diseases have not been fully illuminated. Abnormal thyroid-related indices often occur repeatedly during clinical treatment (<xref ref-type="bibr" rid="B113">Yang et&#x20;al., 2019</xref>). Furthermore, although current treatment methods for GD can achieve a good effect, clinicians still have some concerns about the choice of treatment for safety reasons (<xref ref-type="bibr" rid="B28">Heyma et&#x20;al., 1986</xref>; <xref ref-type="bibr" rid="B113">Yang et&#x20;al., 2019</xref>). At present, a large number of studies have proved the relationship between intestinal microorganisms and autoimmune diseases, including Type 1 diabetes (<xref ref-type="bibr" rid="B23">Gianchecchi and Fierabracci, 2017</xref>; <xref ref-type="bibr" rid="B66">Mullaney et&#x20;al., 2018</xref>), inflammatory bowel disease (<xref ref-type="bibr" rid="B69">Ni et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B7">Cao, 2018</xref>), systemic lupus erythematosus (<xref ref-type="bibr" rid="B12">Corr&#xea;a et&#x20;al., 2017</xref>), rheumatoid arthritis (<xref ref-type="bibr" rid="B82">Sato et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B103">Teng et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B40">Jubair et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B74">Picchianti-Diamanti et&#x20;al., 2018</xref>) and autoimmune thyroid disease (<xref ref-type="bibr" rid="B118">Zhou et&#x20;al., 2014</xref>). Metabolites are also considered as important mediators or modulators between gut microbiota and the thyroid. Therefore, metabolomics investigations may provide a new inside view of GD&#x2019;s&#x20;study.</p>
<p>In this review, we explore the inside relationships between gut microbiota, microbiota-related metabolites and GD, and propose new ideas for prevention, diagnosis, and treatment of&#x20;GD.</p>
<sec id="s1-1">
<title>Brife Knowledge of Gut Microbiota</title>
<p>The human body is a superorganism due to the residence of trillions of prokaryotes symbiosis. Approximately 66% of the total bacteria are mainly live in the gut. Gut microbiota includes more than one thousand known species of bacteria with at least three million genes (<xref ref-type="bibr" rid="B27">Hehemann et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B76">Relman, 2012</xref>; <xref ref-type="bibr" rid="B15">Docimo et&#x20;al., 2020</xref>). Apart from absorbing nutrients from the human body that they depend on for survival, intestinal flora also provides beneficial or harmful metabolites to the human body through their metabolic process (<xref ref-type="bibr" rid="B104">Turnbaugh and Gordon, 2009</xref>; <xref ref-type="bibr" rid="B76">Relman, 2012</xref>). These microflorae participate in the body&#x2019;s energy metabolism through various mechanisms, affecting the conversion of food to energy in the host, and play an essential role in the healthy state of the host (<xref ref-type="bibr" rid="B56">Lozupone et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B97">Sommer et&#x20;al., 2017</xref>). When the human body is healthy, microorganisms and various organs and tissues depend on each other and act on either to form a microecological balance and jointly maintain the body&#x2019;s health. If the microecological balance is disturbed, it may lead to disease (<xref ref-type="bibr" rid="B87">Sekirov et&#x20;al., 2010</xref>). Therefore, the intestinal flora is considered an &#x201c;organ&#x201d; with multiple regulatory functions, which greatly impacts people&#x2019;s health. Understanding the symbiotic relationship between microorganisms and the human body is of great significance for people to understand their health and the occurrence and development of disease (<xref ref-type="bibr" rid="B104">Turnbaugh and Gordon, 2009</xref>; <xref ref-type="bibr" rid="B76">Relman, 2012</xref>; <xref ref-type="bibr" rid="B84">Schmidt et&#x20;al., 2018</xref>).</p>
<p>The technological breakthroughs in the microbiome boost the research of gut microbiota. The method of bacterial culture is a restriction of traditional bacterial research. The intestinal flora is cultured with various mediums, and the number of bacterial colonies is measured by dilution and colony count (<xref ref-type="bibr" rid="B49">Lagier et&#x20;al., 2018</xref>). This method is sensitive but is constrained. More than 85% of the bacteria in the human intestine are anaerobic bacteria, which is difficult to cultivate in the culture medium (<xref ref-type="bibr" rid="B50">Lagier et&#x20;al., 2015</xref>). Recently, the newly established strategy of culturomics enables the culture of microbiota that cannot be cultured before. These new methods initiate the rebirth of culture in microbiology (<xref ref-type="bibr" rid="B41">Kaeberlein et&#x20;al., 2002</xref>; <xref ref-type="bibr" rid="B70">Nichols et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B49">Lagier et&#x20;al., 2018</xref>). The development of new techniques has made it possible to study unknown gut flora.16Sr RNA high-throughput sequencing and metagenomics are commonly used methods for detecting gut microbiota. 16Sr RNA sequencing mainly studies the species composition, the evolutionary relationships among species and the diversity of communities (<xref ref-type="bibr" rid="B51">Laudadio et&#x20;al., 2018</xref>). On the basis of 16Sr RNA sequencing analysis, metagenomic sequencing can also carry out in-depth research on gene and function, and its detection depth can reach the level of species (<xref ref-type="bibr" rid="B109">Wang et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B51">Laudadio et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B88">Shakya et&#x20;al., 2019</xref>).</p>
<p>With the increasing understanding of the metabolic function of intestinal flora, the narrow sense that host metabolism is regulated by its genes is gradually expanded to co-metabolic regulation of host-symbiotic intestinal bacteria. These metabolites are often from tryptophan metabolic pathways, tyrosine and phenylalanine metabolic pathways, glucose and fatty acid metabolic pathways, classified into indoles, phenols, amino acids, peptides, etc. (<xref ref-type="bibr" rid="B117">Zheng et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B105">Van Treuren and Dodd, 2020</xref>; <xref ref-type="bibr" rid="B19">Fan and Pedersen, 2021</xref>). Microbiome dysbiosis is associated with various diseases, asthma, allergies, inflammatory bowel disease (<xref ref-type="bibr" rid="B2">Arrieta et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B5">Bunyavanich et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B71">Nishino et&#x20;al., 2018</xref>), autism spectrum disorder (ASD) (<xref ref-type="bibr" rid="B68">Needham et&#x20;al., 2021</xref>), diabetes (<xref ref-type="bibr" rid="B24">Giongo et&#x20;al., 2011</xref>), irritable bowel syndrome (IBS) (<xref ref-type="bibr" rid="B60">Mars et&#x20;al., 2020</xref>), obesity (<xref ref-type="bibr" rid="B85">Schwiertz et&#x20;al., 2010a</xref>), cardiovascular disease (<xref ref-type="bibr" rid="B39">Jie et&#x20;al., 2017</xref>), chronic kidney disease (<xref ref-type="bibr" rid="B94">Sircana et&#x20;al., 2019</xref>). Under different disease states, the species abundance of intestinal flora and its related metabolites have various characteristics. Some studies have found that in patients with IBS, the key findings include an increase in Firmicutes to Bacteroidetes ratio (<xref ref-type="bibr" rid="B48">Krogius-Kurikka et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B75">Rajili&#x107;-Stojanovi&#x107; et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B35">Jeffery et&#x20;al., 2012l</xref>; <xref ref-type="bibr" rid="B60">Mars et&#x20;al., 2020</xref>), a decrease in Bifidobacteria and Lactobacilli (<xref ref-type="bibr" rid="B58">Malinen et&#x20;al., 2005</xref>; <xref ref-type="bibr" rid="B45">Kerckhoffs et&#x20;al., 2009</xref>), and an increase in Ruminococcus and Streptococci species (<xref ref-type="bibr" rid="B43">Kassinen et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B75">Rajili&#x107;-Stojanovi&#x107; et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B83">Saulnier et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B30">Hong and Rhee, 2014</xref>). A more coincident finding has been decreased alpha diversity. ASD showed lower levels of phylum Firmicutes and a higher abundance of Bacteroidetes (<xref ref-type="bibr" rid="B59">Mangiola et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B21">Fattorusso et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B89">Sharon et&#x20;al., 2019</xref>). Kang and others observed significant ASD-related behavioral changes in mice with fecal microbiota transplantation (FMT) from ASD (<xref ref-type="bibr" rid="B89">Sharon et&#x20;al., 2019</xref>) and they have developed microbiome transfer therapy (MTT) and observed a reduction in ASD-related symptoms (<xref ref-type="bibr" rid="B42">Kang et&#x20;al., 2017</xref>).</p>
<p>The intestines are also the largest immune organ, gathering more than 70% of the immune cells as a vital digestive organ. Gut microbiota is also related to the host&#x2019;s immune system (<xref ref-type="bibr" rid="B106">Vatanen et&#x20;al., 2016</xref>). Gut microbiota and metabolites can induce the production of helper T&#x20;cells (Th) and regulator T&#x20;cells (Tregs), which contribute to the maturation of host adaptive and innate immunity (<xref ref-type="bibr" rid="B80">Rooks and Garrett, 2016</xref>; <xref ref-type="bibr" rid="B90">Shi et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B44">Kayama et&#x20;al., 2020</xref>). It can be inferred that autoimmune diseases are closely related to intestinal flora (<xref ref-type="bibr" rid="B52">Levy et&#x20;al., 2017</xref>). There are several studies on the gut microbiota and metabolome among GD patients, and many results strongly support a role for the gut microbiota in GD and GO (<xref ref-type="bibr" rid="B65">Moshkelgosha et&#x20;al., 2021</xref>).</p>
</sec>
<sec id="s1-2">
<title>GD and Gut Microbiota</title>
<p>Some previous studies demonstrated the connections between the gut microbiome and AITD (<xref ref-type="bibr" rid="B47">K&#xf6;hling et&#x20;al., 2017</xref>). Many studies showed that GD is related to <italic>yersinia</italic> enterocolitica, e.g., mice fed only with <italic>yersinia</italic> enterocolitica did not develop GD (<xref ref-type="bibr" rid="B111">Weiss et&#x20;al., 1983</xref>; <xref ref-type="bibr" rid="B110">Wang et&#x20;al., 2010</xref>). There were also significant differences in the microbiota profile between HT patients and healthy controls (<xref ref-type="bibr" rid="B116">Zhao et&#x20;al., 2018</xref>). Zhou et&#x20;al. characterized the gut microbiota in hyperthyroid patients (<xref ref-type="bibr" rid="B118">Zhou et&#x20;al., 2014</xref>). There is limited research on the relationships between Graves&#x2019; disease and the gut microbiome. However, thyroid hormone levels correlate with the gut microbiome and the diversity of gut bacteria in patients with GD (<xref ref-type="bibr" rid="B18">Ejtahed et&#x20;al., 2020</xref>). Bacteroidetes and Firmicutes are dominant species in the human gut. The ratio of Firmicutes to Bacteroidetes is commonly considered a representative of health status (<xref ref-type="bibr" rid="B9">Chen et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B33">Indiani et&#x20;al., 2018</xref>). In the disease state, these two phyla tend to show significant changes. For example, Jiang et&#x20;al. showed that GD patients had reduced alpha diversity compared with healthy individuals. At the phylum level, GD patients had a significant higher proportion of Bacteroidetes and a significantly lower proportion of Firmicutes than the controls (<xref ref-type="bibr" rid="B38">Jiang et&#x20;al., 2021</xref>). Ishaq et&#x20;al. also demonstrated this phenomenon in their study (<xref ref-type="bibr" rid="B34">Ishaq et&#x20;al., 2018</xref>). They found that the diversity of gut bacteria in GD patients was less diverse in terms of richness than in healthy people. The proportion of Firmicutes in GD was lower than that in the control group, while the proportion of Bacteroidetes was higher than in the control group (<xref ref-type="bibr" rid="B34">Ishaq et&#x20;al., 2018</xref>). Interestingly, this finding is consistent with what was observed in obese patients. Previous studies have found that obese people tend to have more Firmicutes, while lean people tend to have more Bacteroidetes (<xref ref-type="bibr" rid="B86">Schwiertz et&#x20;al., 2010b</xref>; <xref ref-type="bibr" rid="B79">Riva et&#x20;al., 2017</xref>). Further research work is required about the effects of thyroid hormones on gut microbiota. Besides Firmicutes and Bacteroidetes, there were also significant changes in the ratios and abundances of other phyla. Yan et&#x20;al. showed that the number of Lactobacillales, Bacilli, Megamonas, Prevotalla and Veillonella strains were increased among GD patients (<xref ref-type="bibr" rid="B112">Yan et&#x20;al., 2020</xref>). However, the number of Rikenellaceae, Ruminococuus and Alistipes strains was decreased among GD patients. In addition, the diversity of gut flora was decreased in patients with GD (<xref ref-type="bibr" rid="B112">Yan et&#x20;al., 2020</xref>). There were also significant changes in gut microbiota in GO patients. Shi et&#x20;al. found that the bacterial diversity (Simpson and Shannon) was reduced in patients with GO compared to the controls. At the phylum levels, the proportion of Bacteroidetes increased and Firmicutes decreased significantly in GO than that in controls. There were obvious differences in bacterial profiles between the two groups (<xref ref-type="bibr" rid="B93">Shi et&#x20;al., 2019a</xref>). Then, Shi et&#x20;al. further explored the differences in the compositing of gut microbes between GO and GD patients (<xref ref-type="bibr" rid="B92">Shi et&#x20;al., 2021</xref>). At the phylum levels, the proportion of Chloroflexi was decreased significantly in GO patients. At the genus levels, Bilophila and Subdoligranulum were increased (<xref ref-type="bibr" rid="B92">Shi et&#x20;al., 2021</xref>). It is reported that there are three gut bacteria genera (<italic>Bacteroides</italic>, Prevotella, Alistipes) that could separate GD patients from healthy individuals with 85% accuracy (<xref ref-type="bibr" rid="B100">Su et&#x20;al., 2020</xref>).</p>
<p>Thyrotropin receptor antibody (TRAb) is a characteristic indicator of GD, with sensitivity and specificity greater than 95% for GD diagnosis (<xref ref-type="bibr" rid="B61">Massart et&#x20;al., 2001</xref>; <xref ref-type="bibr" rid="B10">Cooper, 2003</xref>). Shi et&#x20;al. believed that TRAb was significantly correlated with different levels of gut microbiota. At the family level, the proportion of Succinivibrionaceae was positively correlated to TRAb. At the genus level, Subdoligranulum was positively related to TRAb. At the species level, Parabacteroides distasonis showed an opposite correlation with TRAb. Their studies also suggested that GD patients with positive TRAb showed an increased risk of developing GO (<xref ref-type="bibr" rid="B93">Shi et&#x20;al., 2019a</xref>). Prevotella and <italic>Bacteroides</italic> are positively correlated with TRAb in GO patients (<xref ref-type="bibr" rid="B91">Shi et&#x20;al., 2019b</xref>).</p>
</sec>
<sec id="s1-3">
<title>Metabolomics in the Study of GD</title>
<p>The dynamic balance of Th17 and Treg is closely related to the occurrence and development of various autoimmune diseases (<xref ref-type="bibr" rid="B20">Fasching et&#x20;al., 2017</xref>). Treg cells are a subset of regulatory T&#x20;cells that regulate the body&#x2019;s autoimmune response. Tregs are characterized by the transcription factor Foxp3 (major regulators of Treg) and mainly exert immune suppressive effects. Maintaining immune homeostasis by secreting inhibitory factors (TGF-B, IL-10, IL-35) mediate immune suppressive effects by regulating TCR signaling promotes secretion and differentiation of anti-inflammatory cytokines (<xref ref-type="bibr" rid="B25">G&#xf6;schl et&#x20;al., 2019</xref>). The decrease of Treg cells increases the incidence and severity of AITD. And the number of Treg cells is significantly reduced in patients with GD (<xref ref-type="bibr" rid="B81">Saitoh and Nagayama, 2006</xref>; <xref ref-type="bibr" rid="B67">Nakano et&#x20;al., 2007</xref>). The Th17 cells are also a subset of T helper cells by secreting interleukin 17 (IL-17, IL-22) induces inflammation and spread. IL-17 is involved in many inflammatory and autoimmune diseases, including systemic and organ-specific autoimmune diseases (<xref ref-type="bibr" rid="B101">Takeuchi et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B114">Yasuda et&#x20;al., 2019</xref>). Th17 and IL-17 were increased in GD and participated in the development of GD. In patients with AITD, the proportion of Th17 cells in peripheral blood mononuclear cells (PBMCs) increased and higher mRNA level of their specific transcription factor ROR&#x3b3;t in PBMCs (<xref ref-type="bibr" rid="B53">Li et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B54">Li et&#x20;al., 2019</xref>). However, the level of Tregs and expression of Foxp3 mRNA were greatly decreased in AITD (<xref ref-type="bibr" rid="B53">Li et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B54">Li et&#x20;al., 2019</xref>). Figueroa Vega et&#x20;al. found that IL-17 was elevated in the thyroid tissues of GD ROR&#x3b3;t mRNA patients, and both IL-17 and IL-22 levels were higher than healthy controls (<xref ref-type="bibr" rid="B22">Figueroa-Vega et&#x20;al., 2010</xref>). Di. Peng observed that the concentration of IL-17 and IL-22 in plasma of GD patients was significantly higher than that of healthy controls, which was consistent with the increase of Th17 cells and positively correlated with TSAb (<xref ref-type="bibr" rid="B73">Peng et&#x20;al., 2013</xref>). However, some studies have shown the opposite results (<xref ref-type="bibr" rid="B115">Yuan et&#x20;al., 2017</xref>). The metabolites of the gut microbiome have been associated with the generation of proinflammatory cytokines and the production of Th17 cells. Commensal bacteria and their metabolites can also promote Treg generation and suppress the immune system (<xref ref-type="bibr" rid="B26">Haase et&#x20;al., 2018</xref>). SCFAs are produced by the fermentation of non-digestible carbohydrates such as dietary fiber by gut bacteria, including butyrate (C (<xref ref-type="bibr" rid="B93">Shi et&#x20;al., 2019a</xref>)), propionate (C (<xref ref-type="bibr" rid="B34">Ishaq et&#x20;al., 2018</xref>)) and acetate (C (<xref ref-type="bibr" rid="B3">Bahn, 2003</xref>)), are essential metabolites in maintaining homeostasis (<xref ref-type="bibr" rid="B57">Luu and Visekruna, 2019</xref>). SCFAs have been proved to alter chemotaxis and phagocytosis, changes in cell function and proliferation, induction of reactive oxygen species (ROS), anti-tumor and anti-inflammatory (<xref ref-type="bibr" rid="B102">Tan et&#x20;al., 2014</xref>). SCFAs contribute to the maintenance of intestinal barrier integrity and its regeneration effect on the intestinal epithelium (<xref ref-type="bibr" rid="B62">Memba et&#x20;al., 2017</xref>). SCFAs are valuable sources of nutrients for enterocytes, together with thyroid hormones (chiefly triiodothyronine), stimulating enterocyte differentiation (<xref ref-type="bibr" rid="B8">Cayres et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B64">Meng et&#x20;al., 1999</xref>). It also increases intercellular integrity and reduces the risk of a &#x201c;leaky gut&#x201d; by improving the adhesion of intestinal cells and reducing the PH in the intestinal tract, thus avoiding the invasion of pathological organisms (<xref ref-type="bibr" rid="B62">Memba et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B4">Bargiel et&#x20;al., 2021</xref>). It is suggested that GD&#x2019;s development is often linked to a compromised intestinal barrier (<xref ref-type="bibr" rid="B46">Knezevic et&#x20;al., 2020</xref>). Recent studies emphasized the immunomodulatory potential of SCFAs in various autoimmune diseases and inflammatory disorders such as multiple sclerosis (MS), colitis, rheumatoid arthritis and AITD. The relation between SCFAs and thyroid function seems to be confirmed by several studies in the scientific literature describing changes in the gut microbiota, including concentrations of SCFAs in impaired thyroid status (<xref ref-type="bibr" rid="B108">Virili et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B55">Liu et&#x20;al., 2020</xref>). Currently, two essential functions for SCFAs have been identified, inhibition of histone deacetylases (HDACs) and activation of G-protein coupled receptors (GPCRs), particularly GPR43, GPR41 and GPR109&#xa0;A (<xref ref-type="bibr" rid="B102">Tan et&#x20;al., 2014</xref>) (<xref ref-type="bibr" rid="B95">Sivaprakasam et&#x20;al., 2016</xref>). Butyrate has been shown to have a positive effect on rheumatoid arthritis (<xref ref-type="bibr" rid="B32">Hui et&#x20;al., 2019</xref>), inflammatory bowel disease (IBD) (<xref ref-type="bibr" rid="B119">Zhou et&#x20;al., 2018</xref>) and autoimmune hepatitis (AIH) (<xref ref-type="bibr" rid="B31">Hu et&#x20;al., 2018</xref>) by rebalancing between Treg and Th17 and increasing the number of Treg cells and decreasing Th17 cells in the system (<xref ref-type="fig" rid="F1">Figure&#x20;1</xref>). Propionate is found to affect multiple sclerosis (MS) (<xref ref-type="bibr" rid="B17">Duscha et&#x20;al., 2020</xref>) and GD (<xref ref-type="bibr" rid="B100">Su et&#x20;al., 2020</xref>). However, little is known about the role of the SCFAs in Graves&#x2019; disease.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Association between gut microbiota, metabolites, and thyroid autoimmune diseases.</p>
</caption>
<graphic xlink:href="fmolb-09-841223-g001.tif"/>
</fig>
<p>Struja et&#x20;al. predicted the relapse of hyperthyroidism based on the assessment of metabonomics differences. Pyruvate and triglycerides are considered as predictors with AUCs of 0.73 and 0.67 (<xref ref-type="bibr" rid="B99">Struja et&#x20;al., 2018</xref>). Al-Majdoub and others reported changes in the carnitine metabolism of GD patients prior to treatment compared to posttreatment (<xref ref-type="bibr" rid="B1">Al-Majdoub et&#x20;al., 2017</xref>). The level of short-chain acylcarnitine decreased, medium-chain acylcarnitine increased, and long-chain acylcarnitine remained unchanged. The authors speculated that these phenomena reflect a starvation process that induced by hyperthyroidism (<xref ref-type="bibr" rid="B1">Al-Majdoub et&#x20;al., 2017</xref>). Lipid profile from plasma and urine samples of GD patients was significantly different compared to controls. Some of Glycerophosphoethanolamine (PE), Glycerophosphoinositol (PI), Triacylglycerol (TG) and Glycerophosphoglycerol (PG) have changed significantly (<xref ref-type="bibr" rid="B6">Byeon et&#x20;al., 2018</xref>). Polyamine metabolic profiles are also altered in AITD. GD and HT patients showed the same change relative to the control group for most of the polyamine metabolites. <sc>l</sc>-arginine (L-ARG), <sc>l</sc>-omithine (L-ORN), lysine (LYS) agmatine (AGM) are significantly and N-acetylputrescine (NPUT), spermine (SPM), 1,3-diaminopropane (DAP) are lower than the control group. However, GD and HT have different characteristics of change. GD patients had significantly lower cadverine (CAD) and higher N-acetylspermidine (NSPD), spermidine (SPD) and r-Aminobutyric (GABA) acid than the control group. But N-acetylspermine (NSPM) was decreased in HT. The anti-inflammatory effect of SPM was better than that of SDP. SPM/SPD can be more effective for estimating the anti-inflammatory effect. A decrease in SPM/SPD in patients with AITD indicated reduce in protective polyamines. SPM/SPD was negatively correlated with inflammatory chemokine IP-10 and TPOAb (<xref ref-type="bibr" rid="B77">Rider et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B98">Song et&#x20;al., 2019</xref>). Ji et&#x20;al. performed a non-targeted metabolomics analysis on the blood and orbital tissues of GD, GO and healthy controls. They identified ten differential metabolites in the disease group (gluconic acid, glucose, pelargonic acid, threose, fumaric acid, glycerol, mannose, pentade canoic acid, pyruvate, and 2- (4-hydroxyphenyl)ethanol) (<xref ref-type="bibr" rid="B37">Ji et&#x20;al., 20188</xref>). The metabolite panel achieved an accuracy of 0.931 and the sensitivity and specificity are 0.787 and 0.875, respectively (<xref ref-type="bibr" rid="B37">Ji et&#x20;al., 20188</xref>). Among the metabolite panel, almost all metabolites showed a positive correlation with the levels of TRAb (<xref ref-type="bibr" rid="B37">Ji et&#x20;al., 20188</xref>). Propionate was significantly reduced in GD patients, which was negatively correlated with FT3, FT4, TRAb level, and positively correlated with TSH level (<xref ref-type="bibr" rid="B100">Su et&#x20;al., 2020</xref>). At present, there are not many studies on GD metabolomics, and the specific association and mechanism still need to be further studied.</p>
<p>Gut dysbiosis can lead to changes in metabolites such as SCFAs. As a consequence, the balance of Th17 and Tregs would be damaged, leading to an autoimmune response and causing autoimmune thyroid diseases. AITD: autoimmune thyroid diseases; IL: interleukin; Th: T helper cell; Tregs: regulatory T&#x20;cells.</p>
</sec>
<sec id="s1-4">
<title>Microbiome and Metabolome in GD Study</title>
<p>In the last 20&#xa0;years, it has been established that the gut microbiome plays an essential role in maintaining host health and the occurrence and progression of the disease. Metabolites are the primary way that gut microbes interact with hosts. The small molecules generated or modified from microorganisms can be detected in urine, serum, feces, cerebrospinal fluid, and other tissues (<xref ref-type="bibr" rid="B29">Holmes et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B14">Del Rio et&#x20;al., 2017</xref>). The homeostasis of a healthy intestinal environment is regulated by the balance of microbiota, metabolites, and immune systems. In the state of disease, the intestinal balance is usually destroyed. Studies showed that gut dysbiosis leads to Treg/Th17 imbalance through the propionic acid regulation pathway, which, together with other pathogenic factors, promotes GD occurrence (<xref ref-type="bibr" rid="B100">Su et&#x20;al., 2020</xref>). Gut dysbiosis was mainly manifested by a significant decrease in SCFAs-producing bacteria and SCFAs. <italic>Bacteroides fragilis</italic> YCH46 strain in GD patients was obviously reduced compared to healthy controls. It can produce propionic acid, increase the number of Treg cells and reduce the number of Th17 cells. Therefore, <italic>B. fragilis</italic> YCH46 was a natural activator of Treg cells and inhibitor of Th17 cells (<xref ref-type="bibr" rid="B78">Rios-Covian et&#x20;al., 2015</xref>). YCH46 strain of <italic>B. fragilis</italic> provides a new direction for the treatment of GD. It can improve immune dysfunction in GD patients and be used as an immunomodulator or as an auxiliary treatment for GD patients to reduce recurrence rate (<xref ref-type="bibr" rid="B100">Su et&#x20;al., 2020</xref>). A recent study found significant differences in metabolic pathways between GD groups and healthy controls. Formaldehyde assimilation and allantoin degradation, mevalonate and isoprene biosynthesis significantly increased in the GD patients. In contrast, the microbial metabolic abilities of fatty acid biosynthesis, pyruvate fermentation to hexanol, anaerobic energy metabolism, creatinine degradation and gluconeogenesis decreased significantly in relative abundance in the patients. The change of gut microbiota is Butyricimonas <italic>faecalis</italic>, Faecalibacterium prausnitzii, Akkermansia muciniphila and Bifidobacterium adolescentis decreased in the GD, whereas Veillonella parvula, Eggerthella lenta, <italic>Fusobacterium</italic> mortiferum, <italic>Streptococcus</italic> parasanguinis, and <italic>Streptococcus</italic> salivarius were enriched. And use propionic acid, acetic acid, cholate and chenodeoxycholate as potential biomarkers (<xref ref-type="bibr" rid="B120">Zhu et&#x20;al., 2021</xref>). Jiang et&#x20;al. found that Blautia, Eubacterium and Anaerostipes were decreased in GD. Eubacterium and Anaerostipes produce butyric acid and maintain the integrity of the intestinal epithelium as well as induce the generate of Treg cells to strengthen the tightness of the intestinal mucosal barrier (<xref ref-type="bibr" rid="B16">Duncan et&#x20;al., 2004</xref>; <xref ref-type="bibr" rid="B107">Venkataraman et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B38">Jiang et&#x20;al., 2021</xref>). The primary metabolite of Blautia is butyric acid and has been shown to have anti-inflammatory effects (<xref ref-type="bibr" rid="B36">Jenq et&#x20;al., 2015</xref>). The decrease of these three butyric acid-producing bacteria leads to the reduction of butyric acid and inhibits the differentiation of Treg cells, resulting in immune system dysfunction and eventually the development of AITD (<xref ref-type="bibr" rid="B38">Jiang et&#x20;al., 2021</xref>).</p>
</sec>
</sec>
<sec sec-type="discussion" id="s2">
<title>Discussion</title>
<p>Autoimmune diseases are still challenging for the clinic. Changes in the composition and abundance of the gut microbiota, as well as related metabolites, are closely linked to the occurrence of GD. These findings provide some potential biomarkers for early diagnosis of GD, and some new probiotics related to GD can be used for adjunctive treatment and prevention of recurrence. However, related studies on gut microbiota metabolome in patients with GD are relatively lacking, and further studies are needed. It is believed that probiotics have positive effects on thyroid diseases, which has been confirmed <italic>in&#x20;vitro</italic> cell studies and animal studies. However, these effects on human beings still require intensive investigations. Accurate qualitative-quantitative characterization of probiotics according to different pathological stages are also needed. Current metabolomics studies provide the correlations between gut micrbiota and the disease, however, the molecular mechanism between gut microbiota and GD remain unclear. One of the key point is how the metabolites synthesized by the gut microbiota. This is essential for the following development of related medicines.</p>
<p>The ultimate goal for the multi-omics study is to develop new diagnostic standards (microbial/metabolite biomarkers) and treatment strategies (probiotics/targeted microbial therapy or functional metabolites) for GD, with an individual treatment plan for each patient to achieve a complete cure and prevent a recurrence.</p>
</sec>
</body>
<back>
<sec id="s3">
<title>Author Contributions</title>
<p>HaL write the manuscript, PY revised the paper. HuL, CL, MS, and TW review the manuscript.</p>
</sec>
<sec sec-type="COI-statement" id="s4">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s5">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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