AUTHOR=Zhu Hancan , Shi Feng , Wang Li , Hung Sheng-Che , Chen Meng-Hsiang , Wang Shuai , Lin Weili , Shen Dinggang 

TITLE=Dilated Dense U-Net for Infant Hippocampus Subfield Segmentation

JOURNAL=Frontiers in Neuroinformatics

VOLUME=Volume 13 - 2019

YEAR=2019

URL=https://www.frontiersin.org/journals/neuroinformatics/articles/10.3389/fninf.2019.00030

DOI=10.3389/fninf.2019.00030

ISSN=1662-5196

ABSTRACT=Accurate and automatic segmentation of infant hippocampal subfields from magnetic resonance (MR) images is an important step for studying memory related infant neurological diseases. However, existing hippocampus subfield segmentation methods were generally designed based on adult subjects and would compromise performance when applied to infant subjects due to insufficient tissue contrast and fast changing structural patterns of early hippocampal development. In this paper, we propose a new fully convolutional network (FCN) for infant hippocampus subfield segmentation by embedding the dilated dense network in the U-net, namely DUnet. The embedded dilated dense network can generate multi-scale features while keeping high spatial resolution, which is useful in fusing the low-level features in the contracting path with the high-level features in the expanding path. To further improve the performance, we group every two convolutional layers with one residual connection in the DUnet, and obtain the Residual DUnet (ResDUnet). Experimental results show that the proposed DUnet and ResDUnet improve the average Dice coefficient by 2.1% and 2.5% for infant hippocampus subfield segmentation, respectively, when compared with the 3D U-net. The results also demonstrate that the proposed methods outperform the state-of-the-art methods.