AUTHOR=Liuzzi Lucrezia , Quinn Andrew J. , O’Neill George C. , Woolrich Mark W. , Brookes Matthew J. , Hillebrand Arjan , Tewarie Prejaas TITLE=How Sensitive Are Conventional MEG Functional Connectivity Metrics With Sliding Windows to Detect Genuine Fluctuations in Dynamic Functional Connectivity? JOURNAL=Frontiers in Neuroscience VOLUME=Volume 13 - 2019 YEAR=2019 URL=https://www.frontiersin.org/journals/neuroscience/articles/10.3389/fnins.2019.00797 DOI=10.3389/fnins.2019.00797 ISSN=1662-453X ABSTRACT=Despite advances in the field of dynamic connectivity, fixed sliding window approaches for the detection of fluctuations in functional connectivity are still widely used. The use of conventional connectivity metrics in conjunction with a fixed sliding window comes with the arbitrariness of the chosen window lengths. In this paper we use multivariate autoregressive and neural mass models with a-priori defined ground truths to systematically analyse the sensitivity of conventional metrics in combination with different window lengths to detect genuine fluctuations in connectivity for various underlying state durations. Metrics of interest are the coherence, imaginary coherence, phase lag index, phase locking value and the amplitude envelope correlation. We performed analysis for two nodes and at the network level. We demonstrate that these metrics show indeed higher variability for genuine temporal fluctuations in connectivity compared to a static connectivity state superimposed by noise. Overall, the error of the connectivity estimates themselves decreases for longer state durations (order of seconds). The reverse was true for the correlations of the connectivity fluctuations with the ground truth. In general, metrics, in combination with a sliding window, perform poorly for very short state durations. Increasing the SNR of the system only leads to a moderate improvement. A window length that matches the temporal duration of the underlying states usually leads to the highest correlation with the ground truth. This also indicates that a mismatch between underlying state duration and window length could lead to an underestimation of functional connectivity. In addition, at the network level, only longer window widths were sufficient to detect plausible resting state networks that matched the underlying ground truth, especially for the phase locking value, amplitude envelope correlation and coherence. We conclude that fixed sliding window approaches for connectivity can detect modulations of connectivity, but mostly if the underlying dynamics operate on moderate to slow timescales. In practice, this can be a drawback, as state durations can vary significantly in empirical data.