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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Neurosci.</journal-id>
<journal-title>Frontiers in Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-453X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fnins.2022.1003997</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Neuroscience</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>How important is the N-terminal acetylation of alpha-synuclein for its function and aggregation into amyloids?</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Iyer</surname> <given-names>Aditya</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<xref ref-type="author-notes" rid="fn002"><sup>&#x2020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1970932/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Sidhu</surname> <given-names>Arshdeep</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Subramaniam</surname> <given-names>Vinod</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="corresp" rid="c002"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/81932/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen</institution>, <addr-line>Groningen</addr-line>, <country>Netherlands</country></aff>
<aff id="aff2"><sup>2</sup><institution>Nitte University Centre for Science Education and Research, Nitte University (DU)</institution>, <addr-line>Mangalore</addr-line>, <country>India</country></aff>
<aff id="aff3"><sup>3</sup><institution>University of Twente</institution>, <addr-line>Enschede</addr-line>, <country>Netherlands</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Wolfgang Hoyer, Heinrich Heine University D&#x00FC;sseldorf, Germany</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Thibault Viennet, Dana-Farber Cancer Institute, United States; Bjoern Falkenburger, Technical University Dresden, Germany</p></fn>
<corresp id="c001">&#x002A;Correspondence: Aditya Iyer, <email>linktoaditya@gmail.com</email></corresp>
<corresp id="c002">Vinod Subramaniam, <email>v.subramaniam@utwente.nl</email></corresp>
<fn fn-type="present-address" id="fn002"><p><sup>&#x2020;</sup>Present Address: Aditya Iyer, Amyl Therapeutics, Li&#x00E8;ge, Belgium</p></fn>
<fn fn-type="other" id="fn004"><p>This article was submitted to Neurodegeneration, a section of the journal Frontiers in Neuroscience</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>11</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>16</volume>
<elocation-id>1003997</elocation-id>
<history>
<date date-type="received">
<day>26</day>
<month>07</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>10</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2022 Iyer, Sidhu and Subramaniam.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Iyer, Sidhu and Subramaniam</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>N-&#x03B1;-acetylation is a frequently occurring post-translational modification in eukaryotic proteins. It has manifold physiological consequences on the regulation and function of several proteins, with emerging studies suggesting that it is a global regulator of stress responses. For decades, <italic>in vitro</italic> biochemical investigations into the precise role of the intrinsically disordered protein alpha-synuclein (&#x03B1;S) in the etiology of Parkinson&#x2019;s disease (PD) were performed using non-acetylated &#x03B1;S. The N-terminus of &#x03B1;-synuclein is now unequivocally known to be acetylated <italic>in vivo</italic>, however, there are many aspects of this post-translational modifications that are not understood well. Is <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S a constitutive modification akin to most cellular proteins, or is it spatio-temporally regulated? Is <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S relevant to the as yet elusive function of &#x03B1;S? How does the <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S influence the aggregation of &#x03B1;S into amyloids? Here, we provide an overview of the current knowledge and discuss prevailing hypotheses on the impact of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S on its conformational, oligomeric, and fibrillar states. The extent to which <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S is vital for its function, membrane binding, and aggregation into amyloids is also explored here. We further discuss the overall significance of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S for its functional and pathogenic implications in Lewy body formation and synucleinopathies.</p>
</abstract>
<kwd-group>
<kwd>protein aggregation</kwd>
<kwd>fibril structure</kwd>
<kwd>acetylation</kwd>
<kwd>post-translational modifications</kwd>
<kwd>alpha-synuclein</kwd>
</kwd-group>
<contract-sponsor id="cn001">Stichting voor Fundamenteel Onderzoek der Materie<named-content content-type="fundref-id">10.13039/501100001712</named-content></contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="147"/>
<page-count count="16"/>
<word-count count="12597"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1" sec-type="intro">
<title>Introduction</title>
<p>N-terminal acetylation is a post-translational modification carried out by N-terminal acetyltransferases in nascent protein chains during translation (<xref ref-type="bibr" rid="B2">Aksnes et al., 2019</xref>). A protein can exist in full, partial and non-acetylated form. N-terminal acetylation involves the addition of an acetyl group to the free alpha-amino group (N-&#x03B1;-group) of the first amino acid in the nascent protein chain by an N-terminal acetyltransferase (Nat) complex (<xref ref-type="bibr" rid="B128">Varland et al., 2015</xref>). To date, N-terminal acetylation is considered irreversible because an N-terminal de-acetyltransferase (Ndat) either does not exist in eukaryotic cells or remains to be discovered. We draw a clear distinction between N-terminal acetylation and <italic>N</italic>-&#x03B1;-acetylation in the context of this review. <italic>N</italic>-&#x03B1;-acetylation refers explicitly to the acetylation of the first amino acid (in most cases, methionine). In contrast, N-terminal acetylation may include the acetylation of amino acid residues in the N-terminal region in proteins comprising several amino acids. Protein acetylation also occurs on the &#x03B5;-amino group of the lysine side chains (<italic>N</italic>-&#x03B5;-acetylation) catalyzed by a different class of enzymes called lysine acetyltransferases (<xref ref-type="bibr" rid="B29">Choudhary et al., 2014</xref>) and on hydroxyl groups of tyrosine/serine/threonine referred to as <italic>O</italic>-acetylation (<xref ref-type="bibr" rid="B139">Yang and Gr&#x00E9;goire, 2007</xref>). In contrast to Ndats, eukaryotic lysine deacetylases are well-known, and their functions are reviewed elsewhere (<xref ref-type="bibr" rid="B139">Yang and Gr&#x00E9;goire, 2007</xref>; <xref ref-type="bibr" rid="B29">Choudhary et al., 2014</xref>; <xref ref-type="bibr" rid="B136">Xia et al., 2020</xref>). In humans, seven Nats have been identified to date &#x2014; NatA, NatB, NatC, NatD, NatE, NatF, and NatH (<xref ref-type="bibr" rid="B2">Aksnes et al., 2019</xref>) &#x2014; which are responsible for N-terminal acetylation of more than 80% of eukaryotic proteins (<xref ref-type="bibr" rid="B8">Arnesen et al., 2009</xref>; <xref ref-type="bibr" rid="B68">Johnson et al., 2010</xref>; <xref ref-type="bibr" rid="B1">Aksnes et al., 2016</xref>), the rest of the 20% proteome is not known to be acetylated (<xref ref-type="bibr" rid="B106">Ree et al., 2018</xref>). Six Nats (NatA to NatF) have broad substrate specificity, except for NatH, which is a dedicated acetylase for actin (<xref ref-type="bibr" rid="B42">Drazic et al., 2018</xref>). Each Nat exhibits a strong preference for specific N-terminal residues and (at least) one or two subsequent amino acids required to facilitate N-terminal acetylation (<xref ref-type="fig" rid="F1">Figure 1</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p><bold>(A)</bold> The prevalence of N-terminal acetylation in human cells is depicted by separating the proteome into the N-terminal(Nt)-acetylome (80%) and the non-Nt-acetylome (20%). The human Nt-acetylome (the complete set of N-terminal acetylated proteins) was predicted by incorporating experimentally determined Nt-acetylation events (including NatC and NatF related data) to all SwissProt entries (version 57.8) based on the occurrence of the first two amino acids. The chance that a protein will be Nt-acetylated mainly depends on the identity of the first two amino acids. To visualize this concept, the Nt-acetylome can be grouped according to <bold>(B)</bold> NAT substrate class or <bold>(C)</bold> N-terminal amino acid frequency. NatD is not depicted due to its limited coverage. Image reproduced from <xref ref-type="bibr" rid="B106">Ree et al. (2018)</xref> licensed under <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">CC BY 4.0</ext-link>. The figure legend is a modified excerpt of the original.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-1003997-g001.tif"/>
</fig>
<p>There is ample evidence in the literature that <italic>N</italic>-&#x03B1;-acetylation of proteins, in general, is an essential mediator of protein function, stability, and localization. N-terminal acetylation impacts protein localization and targeting (<xref ref-type="bibr" rid="B14">Behnia et al., 2004</xref>; <xref ref-type="bibr" rid="B112">Setty et al., 2004</xref>; <xref ref-type="bibr" rid="B52">Forte et al., 2011</xref>; <xref ref-type="bibr" rid="B39">Dikiy and Eliezer, 2014</xref>; <xref ref-type="bibr" rid="B97">Park et al., 2015</xref>), multi-protein complex formation (<xref ref-type="bibr" rid="B111">Scott et al., 2011</xref>; <xref ref-type="bibr" rid="B7">Arnaudo et al., 2013</xref>; <xref ref-type="bibr" rid="B90">Monda et al., 2013</xref>; <xref ref-type="bibr" rid="B137">Yang et al., 2013</xref>; <xref ref-type="bibr" rid="B54">Gao et al., 2016</xref>), protein secondary structure (<xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B89">Miotto et al., 2015</xref>), protein degradation (<xref ref-type="bibr" rid="B65">Hwang et al., 2010</xref>; <xref ref-type="bibr" rid="B113">Shemorry et al., 2013</xref>) and aggregation into amyloid fibrils (<xref ref-type="bibr" rid="B69">Kang et al., 2013</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>; <xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref>). Of the seven identified Nats, NatB holds particular importance in the context of diseases. NatB acetylates essential proteins at the N-terminus such as tropomyosin, actin, and alpha-synuclein (&#x03B1;S); is required for stability of the actin cytoskeleton; is vital for cell-cycle progression (<xref ref-type="bibr" rid="B118">Starheim et al., 2008</xref>), cell proliferation (<xref ref-type="bibr" rid="B3">Ametzazurra et al., 2008</xref>); and is implicated in diseases such as hepatocellular carcinoma and Parkinson&#x2019;s disease (PD) (<xref ref-type="bibr" rid="B101">Polevoda and Sherman, 2003</xref>; <xref ref-type="bibr" rid="B3">Ametzazurra et al., 2008</xref>; <xref ref-type="bibr" rid="B62">Halliday et al., 2011</xref>; <xref ref-type="bibr" rid="B92">Neri et al., 2017</xref>).</p>
<p>&#x03B1;S is an intrinsically disordered protein found in high concentrations at the synaptic junctions of neuronal cells. Its precise role in the etiology of PD remains unknown. Several decades of research have not brought us much closer to pinning down its physiological function in eukaryotic cells. &#x03B1;S comprises three domains: the positively charged N-terminal region (aa 1-60) which is involved in membrane binding (<xref ref-type="bibr" rid="B10">Bartels et al., 2010</xref>; <xref ref-type="bibr" rid="B81">Lorenzen et al., 2014</xref>; <xref ref-type="bibr" rid="B142">Zarbiv et al., 2014</xref>; <xref ref-type="bibr" rid="B129">Viennet et al., 2018</xref>; <xref ref-type="bibr" rid="B83">Makasewicz et al., 2021</xref>), the amyloidogenic NAC domain (aa 61-95) crucial for amyloid formation (<xref ref-type="bibr" rid="B135">Waxman et al., 2009</xref>), and the highly charged C-terminal region (aa 96-140), that interacts with polyamines, metal ions, and cellular proteins (<xref ref-type="bibr" rid="B5">Antony et al., 2003</xref>; <xref ref-type="bibr" rid="B45">Eliezer, 2013</xref>). The observed binding of &#x03B1;S to phospholipid membranes is considered relevant for its function. It is also one of the proposed facilitators of the &#x03B1;S aggregation cascade in addition to point mutations, oxidative stress, truncations, possibly leading to neuronal cell death in PD. Like other eukaryotic proteins, &#x03B1;S is subjected to several post-translational modifications, including phosphorylation, ubiquitination, and acetylation; reviewed elsewhere in detail (<xref ref-type="bibr" rid="B21">Breydo et al., 2012</xref>; <xref ref-type="bibr" rid="B9">Barrett and Greenamyre, 2015</xref>; <xref ref-type="bibr" rid="B66">Iyer and Claessens, 2019</xref>; <xref ref-type="bibr" rid="B144">Zhang et al., 2019</xref>). &#x03B1;S is acetylated at the terminal methionine residue (<italic>N</italic>-&#x03B1;-acetylation) by NatB and several lysine residues <italic>in vivo</italic> (<italic>N</italic>-&#x03B5;-acetylation) by other enzymes, but the physiological impact of acetylation of &#x03B1;S is unclear. We aim to give a critical perspective on the impact of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S on its physiological role and pathological aggregation into amyloid fibrils.</p>
</sec>
<sec id="S2">
<title>N-terminal acetylation of &#x03B1;S</title>
<sec id="S2.SS1">
<title>A brief history of <italic>N</italic>-&#x03B1;-acetylation</title>
<p>Much before the ongoing debate over its native state, &#x03B1;S was widely accepted as a monomeric, intrinsically disordered protein associated with intracellular membranes and found substantially in a fibrillar state in numerous synucleinopathies. Early investigations into &#x03B1;S focused on the mechanism of aggregation/toxicity and possibly overlooked the role of post-translational modifications occurring in &#x03B1;S. The loss of a positive charge from the N-terminal methionine of &#x03B1;S acetylation affects its secondary structure substantially (<xref ref-type="fig" rid="F2">Figure 2</xref>). <italic>N</italic>-&#x03B1;-acetylation is considered crucial for aggregation of &#x03B1;S into amyloid fibrils (<xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B138">Yang et al., 2021</xref>) and interaction with other binding partners in its native cellular environment (<xref ref-type="bibr" rid="B141">Zabrocki et al., 2008</xref>; <xref ref-type="bibr" rid="B108">Runfola et al., 2020</xref>). The <italic>N</italic>-&#x03B1;-acetylated form is believed to represent the functional form of the protein, and the debate over its native state being monomeric or tetrameric continues as discussed in the following sections.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Schematic outline of N-terminal acetylation. N-terminal acetyltransferases (Nats) catalyze the transfer of an acetyl group (CH<sub>3</sub>CO) from acetyl-CoA (Ac-CoA) to the free &#x03B1;-amino group of the protein N-terminus. The transferred acetyl group eliminates a positive charge at the protein N-terminus. In the case of &#x03B1;S, <italic>N</italic>-&#x03B1;-acetylation has been shown to induce helix formation in the first 16 residues (<xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>). The existence of N-terminal de-acetyltransferases (Ndats) is unknown.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-1003997-g002.tif"/>
</fig>
<p>The earliest report drawing attention to the presence of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S obtained from brain cells and Lewy bodies considered it a passive post-translational modification (<xref ref-type="fig" rid="F3">Figure 3</xref>; <xref ref-type="bibr" rid="B4">Anderson et al., 2006</xref>). Before this report, &#x03B1;S was mainly purified and studied from mammalian and non-mammalian sources to ascertain its genetic basis in neurogenerative diseases like PD, multiple system atrophy (MSA), Lewy body dementia, Lewy body variant of Alzheimer&#x2019;s disease (LBAD), and AD. The relevance of N-&#x03B1;-acetylation of &#x03B1;S gained prominence following a report by the Selkoe group (<xref ref-type="bibr" rid="B11">Bartels et al., 2011</xref>), who contradicted the established view of the native state of &#x03B1;S as an intrinsically disordered monomer. Using numerous cell lines and an array of analytical techniques, including EM imaging, circular dichroism spectroscopy, clear-native PAGE (CN-PAGE), and sedimentation-equilibrium analytical ultracentrifugation (SE-AUC), the study reported that native/endogenous &#x03B1;S is an aggregation-resistant helical tetramer in dynamic equilibrium with the monomeric &#x03B1;S species. The study drew parallels to transthyretin amyloidosis, wherein the destabilization of a metastable tetramer in human plasma causes aberrant aggregation of monomers (<xref ref-type="bibr" rid="B105">Quintas et al., 1999</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>A brief timeline of key events about the <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-1003997-g003.tif"/>
</fig>
<p>A widespread debate ensued challenging the tetramer hypothesis in several subsequent studies (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>,<xref ref-type="bibr" rid="B49">b</xref>; <xref ref-type="bibr" rid="B26">Burr&#x00E9; et al., 2013</xref>), promptly responded to by the primary advocates of the tetramer hypothesis (<xref ref-type="bibr" rid="B13">Bartels and Selkoe, 2013</xref>; <xref ref-type="bibr" rid="B36">Dettmer et al., 2013</xref>, <xref ref-type="bibr" rid="B38">2015a</xref>,<xref ref-type="bibr" rid="B37">2015b</xref>; <xref ref-type="bibr" rid="B82">Luth et al., 2015</xref>) and other groups (<xref ref-type="bibr" rid="B126">Ullman et al., 2011</xref>; <xref ref-type="bibr" rid="B61">Gurry et al., 2013</xref>; <xref ref-type="bibr" rid="B50">Fern&#x00E1;ndez and Lucas, 2018a</xref>). The authors&#x2019; conclusion that tetrameric &#x03B1;S may dissociate to its monomeric form during cell lysis and widely differing protein purification protocols across research groups gained little reconciliation. The primary authors further showed that the tetrameric species was sensitive to cell-lysis protocols using <italic>in vivo</italic> cross-linking studies that showed the apparent 60-kDa tetramer does not arise from aggregation and that minor 80- and 100-kDa species accompanying varying concentrations of free monomers occurs endogenously in primary neurons as well as neuroblastoma cells that overexpress &#x03B1;S (<xref ref-type="bibr" rid="B36">Dettmer et al., 2013</xref>).</p>
<p>Several new questions emerged as a consequence that have been answered in part with ensuing research, while others remain contentious. Could bacterial systems employed to express and purify &#x03B1;S before the Selkoe report (<xref ref-type="bibr" rid="B11">Bartels et al., 2011</xref>) not possess the necessary physiological environment for tetramer assembly? Could <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S <italic>per se</italic> be of enough biophysical consequence to trigger the formation of aggregation-resistant tetramers? These questions were answered, in part, by a report showing that non-acetylated &#x03B1;S purified from <italic>Escherichia coli</italic> (<italic>E. coli</italic>) closely resembled the aforementioned tetrameric species (<xref ref-type="bibr" rid="B132">Wang et al., 2011</xref>). However, this construct harbored a 10-residue N-terminal fusion-protein fragment (GPLGSPEFPG) post cleavage of the Glutathione S-transferase (GST) tag that could mimic the biophysical consequences of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S. To test if <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S in bacterial cells could lead to the formation of a tetrameric species, a bacterial co-expression system was used to generate <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S (NTAc-&#x03B1;S). The authors determined that N-terminal acetylation and non-denaturing purification protocols, including the non-ionic detergent octyl &#x03B2;-<sc>D</sc>-glucopyranoside (BOG), were necessary to observe helical oligomeric &#x03B1;S (<xref ref-type="bibr" rid="B124">Trexler and Rhoades, 2012</xref>). In this co-expression system, the NatB acetylase derived from yeast is cloned into a bacterial plasmid, allowing N-terminal acetylation of NatB peptide substrates (MD, ME, MN, MQ; see <xref ref-type="fig" rid="F1">Figure 1</xref>) alongside the overexpression of a target protein (<xref ref-type="bibr" rid="B68">Johnson et al., 2010</xref>). The CD spectrum of NTAc-&#x03B1;S showed a helical and presumably tetrameric form when purified in the presence of BOG, while non-acetylated or BOG-free &#x03B1;S was disordered and monomeric. These results implicitly contradicted the hypothesis of a folded &#x03B1;S tetramer in non-acetylation-competent <italic>E. coli</italic> cells used in the previous report (<xref ref-type="bibr" rid="B132">Wang et al., 2011</xref>). Could the detergents used during purification protocols lead to the proposed tetrameric state? Using the NatB bacterial co-expression system, <xref ref-type="bibr" rid="B50">Fern&#x00E1;ndez and Lucas, 2018a</xref>,<xref ref-type="bibr" rid="B51">b</xref> demonstrated a detergent-free method to isolate recombinant tetrameric NTAc-&#x03B1;S. Subsequently, &#x03B1;S was shown to be monomeric by in-cell NMR studies in intact <italic>E. coli</italic> cells (<xref ref-type="bibr" rid="B17">Binolfi et al., 2012</xref>; <xref ref-type="bibr" rid="B134">Waudby et al., 2013</xref>) and numerous non-neuronal cells (<xref ref-type="bibr" rid="B123">Theillet et al., 2016</xref>). The monomer-tetramer debate is far from over but highlights the importance of how subtle environmental changes can cause significant molecular changes in &#x03B1;S. The physiological conditions governing the dynamic equilibrium between monomeric and tetrameric &#x03B1;S remain mysterious. Intuitively, an off-pathway, fibril-resistant &#x03B1;S tetramer can sequester aggregation-competent &#x03B1;S monomers. However, the irreproducibility across labs in isolating the tetrameric species, unknown factors affecting the monomer-tetramer equilibrium and tetramer stability have resulted in reluctant acceptance of its existence.</p>
<p>We speculate that <italic>N</italic>-&#x03B1;-acetylation alone or in combination with other post-translational modifications could be a regulatory step in maintaining an equilibrium between the monomeric and tetrameric states of &#x03B1;S. Tetrameric &#x03B1;S species have been purified from both endogenously expressing and overexpressing mammalian cell lines (<xref ref-type="bibr" rid="B36">Dettmer et al., 2013</xref>), ruling out pleiotropic effects of high concentrations. However, in gastrointestinal neuronal cells from rats, the population of tetrameric &#x03B1;S is absent, and these cells constitute primarily monomeric &#x03B1;S (<xref ref-type="bibr" rid="B31">Corbill&#x00E9; et al., 2016</xref>). Crowding within mammalian cells alone cannot explain the tetrameric state since in-cell NMR studies in bacterial cytoplasm (<xref ref-type="bibr" rid="B17">Binolfi et al., 2012</xref>; <xref ref-type="bibr" rid="B134">Waudby et al., 2013</xref>) and the periplasm (<xref ref-type="bibr" rid="B87">McNulty et al., 2006</xref>) that are significantly more crowded than mammalian cells (<xref ref-type="bibr" rid="B122">Swaminathan et al., 1997</xref>) affirm its monomeric state. Assuming there is an equilibrium between the tetrameric and monomeric species <italic>in vivo</italic>, how are the purified tetrameric &#x03B1;S species stably maintained, preventing their dissociation <italic>in vitro</italic>? A dynamic equilibrium between the tetrameric and monomeric state must be carefully regulated <italic>in vivo</italic>. Long-range interactions between acetyl groups and other amino acids within protein assemblies are well known (<xref ref-type="bibr" rid="B74">Langeberg and Scott, 2015</xref>), and transcriptional control via acetylation is one such example (<xref ref-type="bibr" rid="B76">Latham and Dent, 2007</xref>). It remains unclear whether <italic>N</italic>-&#x03B1;-acetylation, the purification methodology, the use of detergents, or the choice of a prokaryotic/eukaryotic expression system is crucial for tetramer formation. If <italic>in vivo</italic> cross-linking of tetrameric &#x03B1;S can be achieved, in-cell NMR studies may prove particularly useful in providing concrete evidence of such a species. In addition, how/if the distribution of the monomer-tetramer species depends on cell type and other biochemical factors needs investigation. For instance, glucocerebrosidase 1 deficiency in SH-SY5Y cells has been shown to disfavor the tetrameric &#x03B1;S populations over the monomeric &#x03B1;S population (<xref ref-type="bibr" rid="B71">Kim et al., 2018</xref>), while the tetrameric &#x03B1;S population is favored in primary neurons and erythroid cells (<xref ref-type="bibr" rid="B36">Dettmer et al., 2013</xref>). Addressing the <italic>N</italic>-&#x03B1;-acetylated state of &#x03B1;S is a promising avenue to probe the existence of a tetrameric species, to understand the possible mechanisms of amyloid formation, and to gain insights into the physiological function of &#x03B1;S.</p>
</sec>
<sec id="S2.SS2">
<title>Impact of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S on biophysical properties and membrane binding</title>
<p>NTAc-&#x03B1;S is suggested to be a physiologically relevant brain species (<xref ref-type="bibr" rid="B11">Bartels et al., 2011</xref>; <xref ref-type="bibr" rid="B49">Fauvet et al., 2012b</xref>; <xref ref-type="bibr" rid="B26">Burr&#x00E9; et al., 2013</xref>; <xref ref-type="bibr" rid="B123">Theillet et al., 2016</xref>), and several emerging studies have benchmarked its biophysical properties with non-acetylated &#x03B1;S. A summary of all biophysical properties of NTAc-&#x03B1;S is listed in <xref ref-type="table" rid="T1">Table 1</xref>. Early solution-NMR studies with NTAc-&#x03B1;S revealed that <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S triggered a helical conformation in the first 16 residues (<xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B39">Dikiy and Eliezer, 2014</xref>) <italic>in vitro</italic> and subsequently in live neuronal and non-neuronal cells using in-cell NMR (<xref ref-type="bibr" rid="B123">Theillet et al., 2016</xref>). The interactions of non-acetylated &#x03B1;S with membranes have been studied in detail, but interactions with NTAc-&#x03B1;S remain relatively less explored. To the best of our knowledge, membrane binding studies have been carried out only for monomeric NTAc-&#x03B1;S and not for the tetrameric NTAc-&#x03B1;S species. It is well known that the N-terminal region (aa 1&#x2013;60) of &#x03B1;S is involved in membrane binding. However, emerging studies show that the first 15 residues in &#x03B1;S largely recapitulate the binding properties of full-length &#x03B1;S such as partition constants, molecular mobility, and membrane insertion (<xref ref-type="bibr" rid="B100">Pfefferkorn et al., 2012</xref>), and removal of the first 14 residues severely compromises membrane binding (<xref ref-type="bibr" rid="B28">Cholak et al., 2020</xref>). How <italic>N</italic>-&#x03B1;-acetylation affects the membrane binding ability of &#x03B1;S is unclear due to conflicting results and differing solvent conditions and membrane compositions used. For example, NTAc-&#x03B1;S showed enhanced membrane binding in two studies (<xref ref-type="bibr" rid="B12">Bartels et al., 2014</xref>; <xref ref-type="bibr" rid="B129">Viennet et al., 2018</xref>) and no enhancement in other studies (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>).</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Effect of N-terminal acetylation on biophysical properties of &#x03B1;S.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left" colspan="2">Probed parameter</td>
<td valign="top" align="center">Technique used</td>
<td valign="top" align="center">Effect of <italic>N</italic>-&#x03B1; -acetylation compared to non-acetylated &#x03B1;S</td>
<td valign="top" align="center">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="2">Predominant native state</td>
<td valign="top" align="center">In-cell NMR</td>
<td valign="top" align="center">Monomeric</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B123">Theillet et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" colspan="2"/>
<td valign="top" align="center">Mass spectrometry, native-PAGE, CD spectroscopy, sedimentation equilibrium-analytical ultracentrifugation (SE-AUC)</td>
<td valign="top" align="center">Monomeric</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>,<xref ref-type="bibr" rid="B49">b</xref>; <xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B26">Burr&#x00E9; et al., 2013</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" colspan="2"/>
<td valign="top" align="center"/>
<td valign="top" align="center">Tetrameric</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B11">Bartels et al., 2011</xref>; <xref ref-type="bibr" rid="B132">Wang et al., 2011</xref>; <xref ref-type="bibr" rid="B82">Luth et al., 2015</xref>; <xref ref-type="bibr" rid="B50">Fern&#x00E1;ndez and Lucas, 2018a</xref>,<xref ref-type="bibr" rid="B51">b</xref></td>
</tr>
<tr>
<td valign="top" align="left" colspan="2">Membrane binding of &#x03B1;S monomer</td>
<td valign="top" align="center">CD spectroscopy, isothermal calorimetry (ITC), nuclear magnetic resonance (NMR)</td>
<td valign="top" align="center">Enhanced binding to GM1 gangliosides</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B12">Bartels et al., 2014</xref></td>
</tr>
<tr>
<td valign="top" colspan="2"/>
<td valign="top" align="center"/>
<td valign="top" align="center">Comparable binding to GM3, POPS lipids</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B12">Bartels et al., 2014</xref>; <xref ref-type="bibr" rid="B39">Dikiy and Eliezer, 2014</xref></td>
</tr>
<tr>
<td valign="top" colspan="2"/>
<td valign="top" align="center"/>
<td valign="top" align="center">Moderately enhanced binding to zwitterionic lipids</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B39">Dikiy and Eliezer, 2014</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>; <xref ref-type="bibr" rid="B95">O&#x2019;Leary et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">Aggregation properties</td>
<td valign="top" align="center">Amyloid formation rate</td>
<td valign="top" align="center">ThT fluorescence</td>
<td valign="top" align="center">Decreased</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B12">Bartels et al., 2014</xref>; <xref ref-type="bibr" rid="B53">Gallea et al., 2016</xref>; <xref ref-type="bibr" rid="B109">Ruzafa et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">No significant effect</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">Increased in presence of air-water interface</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B129">Viennet et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center">Heterogeneity in aggregation kinetics</td>
<td valign="top" align="center">ThT fluorescence</td>
<td valign="top" align="center">Decreased</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left">Dimer/<break/> Oligomer formation</td>
<td valign="top" align="center">Oligomer formation</td>
<td valign="top" align="center">Solid-state nanopores and MD simulations</td>
<td valign="top" align="center">Decreased</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B22">Bu et al., 2017</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center">SE-AUC</td>
<td valign="top" align="center">Critically dependent on the presence of BOG detergent</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B124">Trexler and Rhoades, 2012</xref></td>
</tr>
<tr>
<td valign="top" align="left">Fibril structure</td>
<td valign="top" align="center">Fibril height(nm)</td>
<td valign="top" align="center">Atomic force microscopy (AFM)</td>
<td valign="top" align="center">No significant effect</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center">Secondary structure</td>
<td valign="top" align="center">CD spectroscopy</td>
<td valign="top" align="center">Increased &#x03B2;-sheet content</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>; <xref ref-type="bibr" rid="B107">Rossetti et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center">Raman spectroscopy</td>
<td valign="top" align="center">Decreased &#x03B2;-sheet content</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center">Proteinase-K digestion</td>
<td valign="top" align="center">ThT fluorescence and SDS-PAGE</td>
<td valign="top" align="center">Increased proteolysis</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>; <xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="center">Periodicity</td>
<td valign="top" align="center">Scanning transmission electron microscopy (STEM), AFM</td>
<td valign="top" align="center">Increased no. of monomers per nm of fibril</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref></td>
</tr>
</tbody>
</table></table-wrap>
<p>Considering that <italic>N</italic>-&#x03B1;-acetylation leads to loss of a positive charge from the terminal methionine residue, <italic>N</italic>-&#x03B1;-acetylation may affect the interaction between &#x03B1;S and membranes or other binding partners in the cellular milieu. Intuitively, the loss of a positive charge upon <italic>N</italic>-&#x03B1;-acetylation is likely to result in a decreased affinity toward anionic lipid membranes. However, <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S does not affect its binding to anionic phospholipid membranes with increasing surface charge densities but shows enhanced binding to zwitterionic phospholipid membranes in a curvature-dependent manner (<xref ref-type="bibr" rid="B39">Dikiy and Eliezer, 2014</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>; <xref ref-type="bibr" rid="B95">O&#x2019;Leary et al., 2018</xref>). The observation may be reasoned as follows: <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S increases the propensity of the first 16 residues in the N-terminus to organize into helices (<xref ref-type="fig" rid="F2">Figure 2</xref>). The binding of &#x03B1;S to lipid membranes results in a loss of conformational entropy compensated for by favorable electrostatic interactions and hydrogen bonding. Since NTAc-&#x03B1;S binds with a pre-existing helical conformation, the loss in conformational entropy upon binding to anionic membranes is probably lower for NTAc-&#x03B1;S than for the non-acetylated &#x03B1;S. The lower entropy cost associated with helix formation is balanced by losing the positive charge upon <italic>N</italic>-&#x03B1;-acetylation. The binding of non-acetylated and NTAc-&#x03B1;S to anionic lipid membranes is therefore comparable. In the absence of strong, attractive forces between neutral lipid membranes and &#x03B1;S, the effect of <italic>N</italic>-&#x03B1;-acetylation is likely dominated by the increased propensity of &#x03B1;S to fold into an amphipathic helix. Since the final helical content of both NTAc-&#x03B1;S and non-acetylated &#x03B1;S is comparable, the net free energy gain upon binding of NTAc-&#x03B1;S is higher with neutral lipid membranes resulting in enhanced affinity for NTAc-&#x03B1;S.</p>
<p>Although monomeric non-acetylated &#x03B1;S faithfully mimics NTAc-&#x03B1;S in specific biophysical properties like hydrodynamic radii and conformational change upon binding anionic lipid membranes, it does not reflect the importance of NTAc-&#x03B1;S. <italic>N</italic>-&#x03B1;-acetylation may have yet unknown physiological roles that may not be realized in experiments with purified proteins <italic>in vitro</italic>. For example, a recent study showed that abolishing <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S led to lower levels of &#x03B1;S and substantially reduced neurotoxicity in substantia nigra of rats (<xref ref-type="bibr" rid="B131">Vinueza-Gavilanes et al., 2020</xref>). <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S may also be possibly prevented <italic>in vivo</italic> by mutating the aspartic acid residue (D) in the second position to a proline residue (P) as recently shown for &#x03B1;S (<xref ref-type="bibr" rid="B131">Vinueza-Gavilanes et al., 2020</xref>) and numerous other proteins (<xref ref-type="bibr" rid="B58">Goetze et al., 2009</xref>).</p>
<p>Compared to its non-acetylated counterpart, NTAc-&#x03B1;S binds faster to model lipid membranes but forms amyloid aggregates and fibrils slower (<xref ref-type="bibr" rid="B109">Ruzafa et al., 2017</xref>; <xref ref-type="bibr" rid="B28">Cholak et al., 2020</xref>). However, in the presence of air-water interfaces, the apparent lag-time for NTAc-&#x03B1;S aggregation into amyloid fibrils is nearly twofold lesser than that observed with non-acetylated-&#x03B1;S (<xref ref-type="bibr" rid="B129">Viennet et al., 2018</xref>). Further, the presence of the neuronal ganglioside GM1 in model lipid membranes impaired the ability of NTAc-&#x03B1;S to form ThT-positive aggregates (<xref ref-type="bibr" rid="B12">Bartels et al., 2014</xref>). Given that the final helical content of both NTAc-&#x03B1;S and non-acetylated &#x03B1;S are comparable, the kinetic barrier for a membrane-bound helical conformation to a &#x03B2;-sheet conformation would also be comparable. If so, why would NTAc-&#x03B1;S aggregate slower on lipid membranes? Perhaps <italic>N</italic>-&#x03B1;-acetylation stabilizes interactions within the helical conformation and orients residues along with the interface such that &#x03B1;S dips further in the membrane, leading to a robust anchoring. While the above-mentioned model lipid membranes provide valuable biochemical insights, the next step must be to validate these observations in mammalian cells. Despite differences in the kinetics of membrane binding, the membrane-bound conformation and the morphology of micelle-induced aggregates of NTAc-&#x03B1;S are invariant with non-acetylated &#x03B1;S. Mimicking the biophysical consequences of N-&#x03B1;-acetylation of &#x03B1;S with or without PD familial mutations, for example, charge swap on terminal methionine, conformational restriction/stabilization of the N-terminal region, are needed to understand the monomer-tetramer equilibrium, aggregation on or in presence of lipid membranes will provide valuable mechanistic and functional insights into the role <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S.</p>
</sec>
<sec id="S2.SS3">
<title>How does acetylation of &#x03B1;S impact aggregation in amyloid structures?</title>
<p>The effect of <italic>N</italic>-&#x03B1;-acetylation on the structure of &#x03B1;S monomer and amyloid conformation has been investigated using multiple techniques in recent years. At the monomer level, <italic>N</italic>-&#x03B1;-acetylation does not affect the hydrodynamic radius, electrophoretic properties, and oligomerization potential of &#x03B1;S, suggesting minimal changes in the overall structure and biochemistry as compared to non-acetylated &#x03B1;S (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B53">Gallea et al., 2016</xref>; <xref ref-type="bibr" rid="B93">Ni et al., 2019</xref>). However, NMR studies using <sup>1</sup>H-<sup>15</sup>N HSQC show a significant difference in the chemical environment of the first nine residues and increased helical propensity of the first 12 residues (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>). The increased helicity of the N-terminus on acetylation mirrors the structural transitions observed in &#x03B1;S in the presence of model membranes, albeit only in a small region of the protein (<xref ref-type="bibr" rid="B33">Davidson et al., 1998</xref>; <xref ref-type="bibr" rid="B46">Eliezer et al., 2001</xref>; <xref ref-type="bibr" rid="B56">Georgieva et al., 2008</xref>). The acetyl carbonyl (C=O) group can participate in a hydrogen bond with the amino H (N-H) group from subsequent amino acids, which can stabilize a helix by sealing its fraying end (<xref ref-type="bibr" rid="B47">Fairman et al., 1989</xref>; <xref ref-type="bibr" rid="B27">Chakrabartty et al., 1993</xref>; <xref ref-type="bibr" rid="B40">Doig et al., 1994</xref>). NTAc-&#x03B1;S with helical N-terminus may facilitate its transition from a random coil to an &#x03B1;-helix <italic>in vivo</italic>, on interaction with a membrane surface, due to lower entropic cost and favorable dipole interactions associated with adding residues to an &#x03B1;-helix rather than initiating the helix (<xref ref-type="bibr" rid="B147">Zimm and Bragg, 1959</xref>; <xref ref-type="bibr" rid="B32">Creighton, 1993</xref>). In addition to the N-terminus, weak long-range interactions around residues 28&#x2013;31, 43&#x2013;46, 50, and 50&#x2013;66 were also reported in acetylated &#x03B1;S (<xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>). All these sites, toward the end of the N-terminal region (aa 1&#x2013;60) and the beginning of the NAC region (aa 61&#x2013;95) of &#x03B1;S, are associated with &#x03B1;S function and familial forms of PD (<xref ref-type="bibr" rid="B102">Polymeropoulos et al., 1997</xref>; <xref ref-type="bibr" rid="B73">Kr&#x00FC;ger et al., 1998</xref>; <xref ref-type="bibr" rid="B143">Zarranz et al., 2004</xref>; <xref ref-type="bibr" rid="B77">Lesage et al., 2013</xref>; <xref ref-type="bibr" rid="B104">Proukakis et al., 2013</xref>; <xref ref-type="bibr" rid="B98">Pasanen et al., 2014</xref>).</p>
<p>Histidine-50 is one of the copper (I) binding sites of &#x03B1;S that is mutated in the familial form of PD (H50Q mutation) (<xref ref-type="bibr" rid="B121">Sung et al., 2006</xref>; <xref ref-type="bibr" rid="B104">Proukakis et al., 2013</xref>). Non-acetylated &#x03B1;S binds copper via a coordination complex involving the N-terminal amine group of methionine-1, backbone and side chain of aspartate-2, and the imidazole ring of histidine-50 (<xref ref-type="bibr" rid="B44">Dudzik et al., 2011</xref>). A clear difference in methionine-1 and aspartate-2 environment on acetylation in NMR studies (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>) is predictive of different &#x03B1;S-copper interaction in acetylated and non-acetylated form. H50Q mutation in non-acetylated &#x03B1;S increases the aggregation of monomeric &#x03B1;S into amyloid structures, with minor changes in the secondary structure and negligible effect on the overall copper binding capacity (<xref ref-type="bibr" rid="B127">Uversky et al., 2001</xref>; <xref ref-type="bibr" rid="B57">Ghosh et al., 2013</xref>). Copper binding in <italic>N</italic>-&#x03B1;-acetylated H50Q protein (the <italic>in vivo</italic> form of H50Q mutation) is impaired, likely due to a double hit at the copper coordination complex; lack of the N-terminal amine, and the absence of the imidazole side chain at position 50 (<xref ref-type="bibr" rid="B86">Mason et al., 2016</xref>). Loss of copper-binding in acetylated H50Q is likely to interfere with the proposed ferrireductase activity of &#x03B1;S, leading to defects in metal homeostasis <italic>in vivo</italic> (<xref ref-type="bibr" rid="B34">Davies et al., 2011</xref>; <xref ref-type="bibr" rid="B88">Mezzaroba et al., 2019</xref>).</p>
<p><italic>N</italic>-&#x03B1;-acetylated &#x03B1;S, like non-acetylated &#x03B1;S, aggregates into oligomers and fibrils under various experimental conditions (<xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B53">Gallea et al., 2016</xref>; <xref ref-type="bibr" rid="B80">Lima et al., 2019</xref>; <xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref>). There are varying reports for the effect of acetylation on both oligomers and fibrils. The extent of oligomerization of acetylated &#x03B1;S has been reported to be the same (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>) as well as reduced (<xref ref-type="bibr" rid="B22">Bu et al., 2017</xref>). Further, acetylated oligomers and fibrils show morphological and spectral features similar to unmodified &#x03B1;S, except for increased &#x03B2;-sheet and helical content in acetylated &#x03B1;S oligomers (<xref ref-type="bibr" rid="B53">Gallea et al., 2016</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>). The acetylated forms of familial PD mutants, E46K, H50Q, and A53T, show increased aggregation in 3,4-dihydroxyphenylacetaldehyde (DOPAL), dopamine, and SDS micelles, in comparison to wild-type acetylated &#x03B1;S (<xref ref-type="bibr" rid="B109">Ruzafa et al., 2017</xref>; <xref ref-type="bibr" rid="B80">Lima et al., 2019</xref>). Changes in fibrillization kinetics of wild-type &#x03B1;S upon acetylation are also ambiguous. Some studies report no significant difference (<xref ref-type="bibr" rid="B48">Fauvet et al., 2012a</xref>; <xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>; <xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>), while others report slower kinetics, especially in the elongation rate (<xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>; <xref ref-type="bibr" rid="B109">Ruzafa et al., 2017</xref>; <xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref>). This reduced elongation rate could be due to a helical secondary structure at the N-terminus that likely hinders the conversion of a monomer into the typical fibrillar &#x03B2;-sheet conformation (<xref ref-type="bibr" rid="B70">Kang et al., 2012</xref>). Acetylated &#x03B1;S is reported to yield distinct polymorphs (<xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref>) with likely increased structural homogeneity within a population (<xref ref-type="bibr" rid="B67">Iyer et al., 2016</xref>). The increased structural homogeneity in a fibril population may arise from a monomeric pool that is &#x201C;structurally homogenous&#x201D; (<xref ref-type="fig" rid="F2">Figure 2</xref>). <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S results in a homogenous ensemble wherein 16 amino acids are in a helical conformation, leading to the nucleation of a homogenous population of fibrils. In a distinct polymorph, the reduced elongation rate can also be due to lower Thioflavin-T sensitivity toward acetylated &#x03B1;S, as Thioflavin-T fluorescence assay is sensitive to changes in topological features (<xref ref-type="bibr" rid="B116">Sidhu et al., 2018</xref>; <xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref>).</p>
<p>Structurally, fibrils formed by acetylated and non-acetylated &#x03B1;S show a mix of similar and distinct features. An overlay of four full-length &#x03B1;S structures, two with acetylation and two without acetylation, reveal an analogous backbone arrangement (<xref ref-type="fig" rid="F4">Figure 4A</xref>; <xref ref-type="bibr" rid="B125">Tuttle et al., 2016</xref>; <xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref>; <xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref>; <xref ref-type="bibr" rid="B93">Ni et al., 2019</xref>). Both types of fibril structures are formed of two protofilaments that intertwine in a twisted fibril morphology along a 21 screw axis &#x2013; placing two monomers &#x223C;180&#x00B0; to each other with an interaction surface in the center (<xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref>; <xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref>; <xref ref-type="bibr" rid="B93">Ni et al., 2019</xref>). The N-&#x03B1;-acetylated protofilaments show a left-handed helical twist of &#x2013;0.72&#x00B0; and a rise of &#x223C;4.8 &#x00C5; (<xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref>; <xref ref-type="bibr" rid="B93">Ni et al., 2019</xref>), while the non-acetylated protofilaments show a right-handed helical twist of 179.1&#x00B0; and a rise of 2.4 &#x00C5; (<xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref>). The dimer interaction surface in acetylated fibrils is formed by a hydrophobic steric zipper between residues histidine-50 to glutamate-57. Additionally, electrostatic interactions between histidine-50 and lysine-45 from one monomer and glutamate-57 from another monomer, and salt bridges between lysine-58: glutamate-61 (K58-E61) and glutamate-46: lysine-80 (E46-K80) stabilize the fibril core (<xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref>; <xref ref-type="bibr" rid="B93">Ni et al., 2019</xref>). In non-acetylated fibrils, the steric zipper is formed by residues further in the NAC region. Residues 55&#x2013;62 are disordered (ssNMR studies) or do not form the steric zipper (cryoEM studies). The dimer interaction surface is formed by valine-71 to valine-82 in ssNMR studies and by glycine-68 to alanine-78 in cryoEM structures. Moreover, lysine-58 is flipped outward, resulting in the absence of the K58-E61 salt bridge (<xref ref-type="fig" rid="F4">Figure 4A</xref>; <xref ref-type="bibr" rid="B125">Tuttle et al., 2016</xref>; <xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Comparison of available cryo-EM structures of the full-length acetylated (yellow, PDB ID: 6OSJ and orange, PDB ID:6A6B) and non-acetylated &#x03B1;S fibrils (black, PDB ID: 6FLT and blue, PDB ID:6CU7). <bold>(A)</bold> The backbone overlay of acetylated and non-acetylated &#x03B1;S fibrils is shown. The residue K58 in both acetylated &#x03B1;S fibrils is flipped inward, forming a salt bridge between K58-E61 (see inset). In contrast, the salt bridge is broken in acetylated &#x03B1;S fibrils due to the outward flip of K58. <bold>(B)</bold> The backbone overlay generated using ChimeraX of truncated (1-121/2) acetylated (yellow, PDB ID: 6OSL) and non-acetylated &#x03B1;S fibrils (black, PDB ID: 6H6B) depicting flipped K58 residues irrespective of acetylation state and minor loop fluctuations around the G41 residue.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fnins-16-1003997-g004.tif"/>
</fig>
<p>The stabilizing effect of the salt-bridges on protein structure is well known, particularly in the case of &#x03B1;S. The compromised salt bridge between E46 and K80 side chains in an E46K variant of &#x03B1;S leads to a structurally homogenous yet entirely different fibril structure (consisting of one fibril species) and is more pathogenic compared to the wild-type &#x03B1;S (<xref ref-type="bibr" rid="B20">Boyer et al., 2020</xref>). A summary of all the available fibril structures of &#x03B1;S in PDB is listed in <xref ref-type="table" rid="T2">Table 2</xref>, with corresponding indicators for the K58-E61 salt bridge in each structure. An exciting facet of the &#x03B1;S fibril structure emerges concerning the K58-E61 salt bridge. Full-length <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils have the K58-E61 salt bridge intact in sharp contrast to non-<italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils. The presence of the K58-E61 salt bridge is not influenced by <italic>N</italic>-&#x03B1;-acetylation alone but also by C-terminal truncation, phosphorylation of Tyr39, E46K mutation, and fibril polymorphism. The stark differences in the orientation of K58 cannot be an artifact of differing aggregation conditions since, in a single study employing identical aggregation conditions, the K58-E61 salt bridge was preserved in full-length <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils and 1&#x2013;103 <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils but broken in 1&#x2013;122 <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils (<xref ref-type="bibr" rid="B93">Ni et al., 2019</xref>). Further, comparing structures of C-terminal truncated 1&#x2013;121/2 &#x03B1;S fibrils suggests little or no role of <italic>N</italic>-&#x03B1;-acetylation on the orientation of K58 (<xref ref-type="fig" rid="F4">Figure 4B</xref>). Why is the orientation of K58 sensitive to <italic>N</italic>-&#x03B1;-acetylation in full-length &#x03B1;S fibrils but not in C-terminal truncated &#x03B1;S fibrils? Further experiments elucidating the driving force for the K58-E61 salt bridge could be exciting and may give us a better understanding of salt-bridges in the stability of &#x03B1;S fibrils. It is unclear if the orientation of K58 and the salt bridge between K58-E61 is physiologically relevant to its cellular function or pathological aggregation of &#x03B1;S. The outward orientation of K58 may render non-acetylated, and C-terminally truncated fibrils exposed to ubiquitination or SUMOylation (signal for proteasome-induced degradation) or acetylation by lysine acetylases.</p>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Comparison of available &#x03B1;S fibril structures and an overview of K58-E61 salt bridge.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left"></td>
<td/>
<td valign="top" align="center" colspan="2">Orientation<hr/></td>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">N-terminal-&#x03B1;S</td>
<td valign="top" align="center">Salt bridge K58-E61</td>
<td valign="top" align="center">K58</td>
<td valign="top" align="center">E61</td>
<td valign="top" align="center">PDB ID</td>
<td valign="top" align="center">Method</td>
<td valign="top" align="center">References</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="7">Full-length</td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S, 1&#x2013;140</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">2N0A</td>
<td valign="top" align="center">ssNMR</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B125">Tuttle et al., 2016</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S, 1&#x2013;140</td>
<td valign="top" align="center">Present</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6A6B</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S, 1&#x2013;140</td>
<td valign="top" align="center">Present</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6OSJ</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B93">Ni et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S, 1&#x2013;140</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6FLT</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B60">Guerrero-Ferreira et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left" colspan="7">Polymorph</td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S rod</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6CU7</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S twister</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6CU8</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S fibril polymorph 2A</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">6SSX</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B59">Guerrero-Ferreira et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S fibril polymorph 2B</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">6SST</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B59">Guerrero-Ferreira et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">&#x002A;<italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S filament: MSA Type I</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6XYO</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B110">Schweighauser et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">&#x002A;<italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S filament: MSA Type II-1</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6XYP</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B110">Schweighauser et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">&#x002A;<italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S filament: MSA II-2</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6XYQ</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B110">Schweighauser et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left" colspan="7">Truncations/Modifications</td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S,1-121</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6H6B</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B60">Guerrero-Ferreira et al., 2018</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S, 1&#x2013;103</td>
<td valign="top" align="center">Present</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6OSM</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B93">Ni et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S, 1&#x2013;122</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6OSL</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B93">Ni et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S phosphoTyr39 (twist dimer)</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">6L1T</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B146">Zhao et al., 2020b</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S phosphoTyr39 (twist trimer)</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">6L1U</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B146">Zhao et al., 2020b</xref></td>
</tr>
<tr>
<td valign="top" align="left" colspan="7">PD mutants</td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S E46K, 1&#x2013;140</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">6UFR</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B20">Boyer et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S E46K, 1&#x2013;140</td>
<td valign="top" align="center">Broken</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">Out</td>
<td valign="top" align="center">6L4S</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B145">Zhao et al., 2020a</xref></td>
</tr>
<tr>
<td valign="top" align="left"><italic>N</italic>-&#x03B1;-acetyl-&#x03B1;S A53T, 1&#x2013;140</td>
<td valign="top" align="center">Present</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6LRQ</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B120">Sun et al., 2020</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S H50Q Wide Fibril</td>
<td valign="top" align="center">Present</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6PES</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B19">Boyer et al., 2019</xref></td>
</tr>
<tr>
<td valign="top" align="left">NH2-&#x03B1;S H50Q Narrow Fibril</td>
<td valign="top" align="center">Present</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">In</td>
<td valign="top" align="center">6PEO</td>
<td valign="top" align="center">cryoEM</td>
<td valign="top" align="center"><xref ref-type="bibr" rid="B19">Boyer et al., 2019</xref></td>
</tr>
</tbody>
</table></table-wrap>
<p>N-terminal de-acetyltransferases (Ndats) are not known in eukaryotic cells as yet, suggesting constitutional <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S by N-terminal acetyltransferases (Nats). Could it be possible that Nats decline in function or decrease in expression levels in an age-dependent manner? Such a scenario would result in a decrease in <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S over time and possibly affect its function and interaction with its binding partners. It has been shown by several groups that <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils are less cytotoxic compared to non-<italic>N</italic>-&#x03B1;-acetylated &#x03B1;S fibrils. Studies investigating the absolute amounts of <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S and non-<italic>N</italic>-&#x03B1;-acetylated &#x03B1;S in healthy and diseased patients would be a significant step forward. The proposed hypothesis on Nats draws parallels from a study investigating the effect of the NAD-dependent deacetylase sirtuin 2 (SIRT2) on the aggregation potential and cytotoxicity of &#x03B1;S. The authors showed that lysine residues acetylated at the &#x03B5;-amino positions in the N-terminal region of &#x03B1;S (K6 and K10) from mice brains could be deacetylated by SIRT2. The deacetylation event exacerbated its aggregation potential and toxicity <italic>in vitro</italic> and in the substantia nigra of rats (<xref ref-type="bibr" rid="B35">de Oliveira et al., 2017</xref>). Furthermore, mutating K6 and K10 residues to create &#x03B1;S variants that are acetylation-resistant or mimic constitutive acetylation showed that acetylation at these residues prevents &#x03B1;S aggregation in the substantia nigra of rats. The remarkable changes in aggregation potential and toxicity of &#x03B1;S <italic>in vivo</italic> resulting from acetylation of N-terminal lysine residues are intriguing. The authors proposed a model in which the age-dependent increase of SIRT2 in the brain, with the concomitant decrease of acetylated &#x03B1;S, leads to increased &#x03B1;S aggregation and the worsening of the expected defects in the autophagy-lysosome pathway (ALP) associated with aging.</p>
<p>The wild-type interactions of &#x03B1;S protofibrils are perturbed in familial PD mutations. The observation is not surprising as most of the mutations associated with the familial form of PD (H50Q, G51D, A53T, A53E) are located at the dimerization interface. The H50Q mutation disrupts the H50-K45-E57 interaction, while the E46K mutation breaks the E46-K80 salt bridge (<xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref>). In A53T mutations, the dimerization core is formed by only two residues, Tyr-59 and Lys-60, instead of seven residues (H50-E57) in wild-type &#x03B1;S (<xref ref-type="bibr" rid="B120">Sun et al., 2020</xref>). Thus, these mutations can be expected to weaken the fibril core, resulting in morphological differences and greater fragmentation that consequently may increase seeding potential (<xref ref-type="bibr" rid="B145">Zhao et al., 2020a</xref>).</p>
<p>In structural studies, acetylated and non-acetylated &#x03B1;S fibrils could seed aggregation reactions and were cytotoxic (<xref ref-type="bibr" rid="B125">Tuttle et al., 2016</xref>; <xref ref-type="bibr" rid="B78">Li B. et al., 2018</xref>; <xref ref-type="bibr" rid="B79">Li Y. et al., 2018</xref>). In wild-type &#x03B1;S, acetylated &#x03B1;S seeds faithfully template fibril morphology across multiple seeding reactions, while non-acetylated &#x03B1;S seeds show poorer templating (<xref ref-type="bibr" rid="B133">Watson and Lee, 2019</xref>). Since the seed molecule&#x2019;s conformation is critical in templating reactions, an unstable fibril core in non-acetylated &#x03B1;S, due to the absence of the K58-E61 salt bridge, may lead to poor templating (<xref ref-type="bibr" rid="B115">Sidhu et al., 2016</xref>). NMR studies show that in seeded aggregations of acetylated &#x03B1;S monomers with fibril seeds and off-pathway oligomers, the first 11 residues interact with the seeds in both the cases&#x2014;successful templating with fibril seeds and unsuccessful templating with off-pathway oligomers. The observation suggests that the N-terminal interaction of acetylated &#x03B1;S is the first point of contact between a seed and a free monomer, irrespective of templating outcome (<xref ref-type="bibr" rid="B138">Yang et al., 2021</xref>). The differences between oligomers and fibrils from acetylated and non-acetylated &#x03B1;S monomers are likely due to the acetyl group. Still, some of the differences, at least, could also be due to differences in fibril preparation protocols used in each study. Differences in protein concentration; solution conditions like buffer, salt, metal ions, small molecules; agitation; incubation time have a significant effect on the kinetics and morphology of &#x03B1;S fibrils (<xref ref-type="bibr" rid="B64">Hoyer et al., 2002</xref>; <xref ref-type="bibr" rid="B63">Heise et al., 2005</xref>; <xref ref-type="bibr" rid="B103">Powers and Powers, 2006</xref>; <xref ref-type="bibr" rid="B130">Vilar et al., 2008</xref>; <xref ref-type="bibr" rid="B72">Knowles et al., 2009</xref>; <xref ref-type="bibr" rid="B91">Morel et al., 2010</xref>; <xref ref-type="bibr" rid="B18">Bousset et al., 2013</xref>; <xref ref-type="bibr" rid="B25">Buell et al., 2013</xref>, <xref ref-type="bibr" rid="B24">2014</xref>; <xref ref-type="bibr" rid="B114">Sidhu et al., 2014</xref>; <xref ref-type="bibr" rid="B23">Buell, 2019</xref>; <xref ref-type="bibr" rid="B96">Panuganti and Roy, 2020</xref>). Since all the studies compared here have differences in the parameters mentioned above, a direct comparison to arrive at an empirical conclusion is challenging.</p>
</sec>
<sec id="S2.SS4">
<title>Effect of N-terminal acetylation on the physiological function of &#x03B1;S</title>
<p>More than 300 post-translational modifications (PTMs) are known to occur in proteins (<xref ref-type="bibr" rid="B30">Clark et al., 2005</xref>), but a handful of these are known for &#x03B1;S, and their implications have been discussed in detail (<xref ref-type="bibr" rid="B15">Beyer, 2006</xref>; <xref ref-type="bibr" rid="B144">Zhang et al., 2019</xref>). These modifications include acetylation, phosphorylation, nitration, glycosylation, SUMOylation, ubiquitination, di-tyrosine crosslinking, and methionine oxidation. While the impact of PTMs in &#x03B1;S has been studied extensively in isolation, very few studies have considered the impact of <italic>N</italic>-&#x03B1;-acetylation in concert with the modifications mentioned above. Experiments in yeast show that deletion of NatB selectively increased localization of &#x03B1;S to cytoplasm and not plasma membrane as in wild-type yeast (<xref ref-type="bibr" rid="B141">Zabrocki et al., 2008</xref>). Evidence for the role of N-terminal acetylation of &#x03B1;S in its function are scarce and are still emerging. Since <italic>in vivo</italic> &#x03B1;S is universally present in the acetylated form (<xref ref-type="bibr" rid="B11">Bartels et al., 2011</xref>; <xref ref-type="bibr" rid="B49">Fauvet et al., 2012b</xref>; <xref ref-type="bibr" rid="B26">Burr&#x00E9; et al., 2013</xref>; <xref ref-type="bibr" rid="B123">Theillet et al., 2016</xref>), all the studies with endogenous &#x03B1;S represent functions of acetylated &#x03B1;S. However, most of the studies with recombinant &#x03B1;S report behavior of non-acetylated &#x03B1;S. Only systematic comparative studies of &#x03B1;S behavior from endogenous and recombinant &#x03B1;S can delineate the effects of N-terminal acetylation. Limited studies that focus on the acetylated &#x03B1;S show that acetylated forms are involved in Lewy body associated pathology, metal homeostasis and synaptic function. Mass-spectrometry based studies from postmortem tissue of dementia with Lewy bodies (DLB) and PD patients, show full-length and truncated acetylated &#x03B1;S forms (Ac-&#x03B1;S<sub>1&#x2013;139</sub>, Ac-&#x03B1;S<sub>1&#x2013;119</sub> Ac-&#x03B1;S<sub>1&#x2013;103</sub>) and no non-acetylated forms, suggesting that in both disease and healthy conditions acetylation is present (<xref ref-type="bibr" rid="B94">&#x00D6;hrfelt et al., 2011</xref>). This is consistent with another study that identified multiple truncated acetylated forms (Ac- &#x03B1;S<sub>1&#x2013;6</sub>, Ac- &#x03B1;S<sub>13&#x2013;21</sub>, Ac- &#x03B1;S<sub>35&#x2013;43</sub>, Ac- &#x03B1;S<sub>46&#x2013;58</sub>, Ac- &#x03B1;S<sub>61&#x2013;80</sub>, Ac- &#x03B1;S<sub>81&#x2013;96</sub>, Ac- &#x03B1;S<sub>103&#x2013;119</sub>) of &#x03B1;S in Lewy body enriched fractions of PD patient samples (<xref ref-type="bibr" rid="B16">Bhattacharjee et al., 2019</xref>). In addition to brain tissues, only NTAc-&#x03B1;S can be detected in blood from Alzheimer&#x2019;s patients and not the non-acetylated form, which is an indicator of neuronal death (<xref ref-type="bibr" rid="B99">Pero-Gascon et al., 2020</xref>). These studies highlight the importance to study physiologically relevant biochemistry of &#x03B1;S in acetylated forms to find better inhibitors for &#x03B1;S aggregation and to identify biomarkers.</p>
<p>&#x03B1;S is a copper binding protein with two sites for interaction with copper: Met 1-Met 5 and Ala 49-His 50 (<xref ref-type="bibr" rid="B44">Dudzik et al., 2011</xref>). Copper binding at Met 1&#x2013;Met 5 is different for acetylated and non-acetylated &#x03B1;S forms. Copper binding in non-acetylated form at position Met 1&#x2013;Met 5 results in a redox active state that can reduce metals while acetylated &#x03B1;S, though binds Cu<sup>2+</sup>, does not exhibit redox behavior (<xref ref-type="bibr" rid="B55">Garza-Lomb&#x00F3; et al., 2018</xref>). The copper binding behavior of &#x03B1;S at the N-terminus is observed both in solution and membrane bound conformations (<xref ref-type="bibr" rid="B43">Dudzik et al., 2013</xref>). Since both N-terminal acetylation and copper binding increase the propensity of &#x03B1;S to adopt &#x03B1;-helical conformation, it is likely that they synergistically contribute to &#x03B1;S interaction with synaptic vesicles.</p>
<sec id="S2.SS4.SSS1">
<title>Could N-terminal acetylation of &#x03B1;S be a priming event?</title>
<p>Post-translational modifications can be reversible or irreversible, and the regulatory dynamics of these modifications may give vital insights into protein function. Unlike reversible PTMs, like phosphorylation, glycosylation, ubiquitination, SUMOylation, methionine oxidation, nitration that may be rapidly added or removed from a protein under varied metabolic or pathologic cues, N-&#x03B1;-acetylation has been thought to be irreversible and occurring co-translationally. However, there is emerging evidence that acetylation of N-termini of proteins does necessarily occur co-translationally (<xref ref-type="bibr" rid="B41">Dormeyer et al., 2007</xref>). When <sup>15</sup>N isotope-enriched non-acetylated &#x03B1;S was delivered into A2780, HeLa, RCSN-3, B65, and SK-N-SH cells using electroporation and was found to be <italic>N</italic>-&#x03B1;-acetylated entirely within 5 h (<xref ref-type="bibr" rid="B123">Theillet et al., 2016</xref>). These evidences suggest that cells prefer <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S. It may be energetically more favorable for ubiquitous acetylation of &#x03B1;S to occur co-translationally.</p>
<p>There is no evidence of the existence of N-terminal de-acetyltransferases (Ndats), suggesting the irreversible nature of <italic>N</italic>-&#x03B1;-acetylation. This observation opens new avenues to investigate the existence of N-terminal de-acetyltransferases (Ndats) and other regulatory mechanisms that could (dys)regulate <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S. NMR studies have shown that <italic>N</italic>-&#x03B1;-acetylation induces stable &#x03B1;-helix formation in the first 16 amino acid residues in &#x03B1;S (<xref ref-type="bibr" rid="B84">Maltsev et al., 2012</xref>). <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S occurs co-translationally in eukaryotes and therefore precedes all other PTMs. Not surprisingly, the various permutations of PTMs mentioned above in &#x03B1;S preparations have consistently reported <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S at the least. We speculate that <italic>N</italic>-&#x03B1;-acetylation may &#x201C;prime&#x201D; &#x03B1;S for subsequent PTMs vital to its function and explain the cellular need to acetylate the N-terminus co-translationally. Our speculation is based on several observations: (a) <italic>N</italic>-&#x03B1;-acetylation led to plasma membrane localization of acetylated &#x03B1;S in yeast while non-acetylated &#x03B1;S remained in the cytoplasm. Further, the study showed decreased levels of Ser129 phosphorylation in non-acetylated &#x03B1;S compared to acetylated &#x03B1;S (<xref ref-type="bibr" rid="B141">Zabrocki et al., 2008</xref>). (b) Crosstalk between acetylation and other PTMs in a given protein is well known in eukaryotes (<xref ref-type="bibr" rid="B140">Yang and Seto, 2008</xref>) and impacts cell fate, and has implications for aging (<xref ref-type="bibr" rid="B106">Ree et al., 2018</xref>). For example, acetylation of histone H3 at K9/27 positions crosstalk with phosphorylation at S10/28 positions, respectively, to affect downstream gene expression (<xref ref-type="bibr" rid="B76">Latham and Dent, 2007</xref>). (c) The formation of a stabilized helix upon <italic>N</italic>-&#x03B1;-acetylation may provide lysine acetylases a helical scaffold (compared to disordered chain in non-acetylated &#x03B1;S) to effectively acetylate lysine residues in the 6th and 10th position in &#x03B1;S. Such scaffolds are well known in the context of signaling proteins and multi-protein complexes in eukaryotes (<xref ref-type="bibr" rid="B74">Langeberg and Scott, 2015</xref>). (d) The lack of Ndats potentially highlights the importance of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S, with as yet unknown modes of regulation. Typically, modifications closely involved in regulatory processes are reversible processes (<xref ref-type="bibr" rid="B85">Martin, 2007</xref>). Examples of such reversible processes include protein (de)phosphorylation, (de)acetylation, (de)adenylylation, and (de)ADP-ribosylation. Additionally, Acetyl-CoA is a key metabolite in cellular metabolism and its consumption for the <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S indicates a necessary protein modification. (e) <italic>N</italic>-&#x03B1;-acetylation has been shown to inhibit protein targeting to the endoplasmic reticulum (<xref ref-type="bibr" rid="B52">Forte et al., 2011</xref>).</p>
<p>The priming role of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S suggested here may have evaded sight as it likely does not require genomic regulation or quantitative changes in &#x03B1;S levels. Thus, <italic>in vivo</italic> studies investigating the impact of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S on subsequent PTMs, especially phosphorylation, may help us understand if <italic>N</italic>-&#x03B1;-acetylation has a priming function. Understanding the crosstalk between <italic>N</italic>-&#x03B1;-acetylation and S129 phosphorylation is vital since several reports show accelerated inclusion formation and cellular toxicity in different models triggered by S129 phosphorylation (<xref ref-type="bibr" rid="B117">Smith et al., 2005</xref>; <xref ref-type="bibr" rid="B119">Sugeno et al., 2008</xref>). Additionally, more than 90% of &#x03B1;S deposited in Lewy bodies (LBs) in PD patients is phosphorylated at S129 while healthy individuals exhibit roughly 4% S129 phosphorylation (<xref ref-type="bibr" rid="B6">Arawaka et al., 2017</xref>).</p>
</sec>
</sec>
</sec>
<sec id="S3">
<title>Directions for future research</title>
<p>The physiologically native state of &#x03B1;S is unquestionably <italic>N</italic>-&#x03B1;-acetylated. The observation has been determined exhaustively in numerous mammalian cells and organisms. It remains irrefutably an irreversible modification in &#x03B1;S so far. The impact of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S in the context of pathological consequences (aggregation into toxic oligomers, fibrils, and higher-ordered aggregates) is increasingly being investigated. With the advent of cryo-EM, we are beginning to see structural details of &#x03B1;S fibrils at unprecedented spatial resolutions. Emerging studies are benchmarking the fibril structure of NTAc-&#x03B1;S housing PD familial mutations with endogenous &#x03B1;S fibrils isolated from diseased patients. However, despite these achievements, the impact of <italic>N</italic>-&#x03B1;-acetylation on the function of &#x03B1;S is still murky.</p>
<p>It is vital to understand how acetylation imbalance in &#x03B1;S manifests <italic>in vivo</italic> and which physiological consequences of the imbalance lead to neurotoxicity (<xref ref-type="bibr" rid="B35">de Oliveira et al., 2017</xref>). In this respect, a detailed proteomics study documenting the ratio of acetylated and non-acetylated &#x03B1;S over the progress of Lewy body formation would be remarkable. Emerging studies have shown enough evidence of <italic>N</italic>-&#x03B1;-acetylation affecting several downstream processes in living cells. A recent study demonstrated that <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S determines &#x03B1;S levels and subsequent toxicity in primary neurons (<xref ref-type="bibr" rid="B131">Vinueza-Gavilanes et al., 2020</xref>). Using point mutants that altered or blocked <italic>N</italic>-&#x03B1;-acetylation, the authors demonstrated that blocking <italic>N</italic>-&#x03B1;-acetylation led to a decrease in &#x03B1;S levels in live primary neurons and concomitantly reduced neurotoxicity. The prospect of blocking <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S by NatB is exciting, yet, maybe challenging for drug discovery strategies given that NatB acetylates &#x223C;20% of cellular proteins. CRISPR-based strategies in the future may be able to edit the first two N-terminal amino acids and demonstrate if <italic>in vivo</italic> blocking <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S may help to decrease &#x03B1;S levels. Although NTAc-&#x03B1;S is recognized as the physiologically relevant species in healthy brain cells &#x2013; in both the soluble and insoluble fractions of brain tissues of PD patients (<xref ref-type="bibr" rid="B4">Anderson et al., 2006</xref>) &#x2013; the use of non-acetylated &#x03B1;S is rampant in emerging literature. The use of NTAc-&#x03B1;S must be encouraged, and NTAc-&#x03B1;S should be a gold standard for all studies investigating this multi-faceted protein (<xref ref-type="bibr" rid="B75">Lashuel et al., 2013</xref>) concerning conformational changes, oligomerization and aggregation propensities, lipid interactions, and other cellular binding partners.</p>
<p>In the future, we must focus our efforts toward elucidating (a) the effect of co-occurring <italic>N</italic>-&#x03B1;-acetylation and other PTMs in &#x03B1;S on its membrane (un)binding, oligomer/fibril structure, and corresponding aggregation kinetics, (b) the effect of co-occurring <italic>N</italic>-&#x03B1;-acetylation and familial PD mutations on &#x03B1;S function and aggregation into fibrillar structures, (c) the relation between the level of <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S and the progression rate of neurodegeneration in synucleinopathies, (d) the relation between metal-ion (dys)homeostasis and cellular models of synucleinopathies wherein levels of <italic>N</italic>-&#x03B1;-acetylation can be modulated, and (e) the complex relation between aggregation rates, diffusion coefficients, macromolecular crowding and <italic>N</italic>-&#x03B1;-acetylated &#x03B1;S <italic>in vivo</italic>. We may also want to investigate the interplay of regulatory factors (sirtuins) or genetic circuits triggered in PD patients and <italic>N</italic>-&#x03B1;-acetylation levels. While the physiological function of &#x03B1;S remains evasive, <italic>N</italic>-&#x03B1;-acetylation of &#x03B1;S presents an exciting path for future research.</p>
</sec>
<sec id="S4">
<title>Author contributions</title>
<p>AI, AS, and VS wrote the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="S5" sec-type="funding-information">
<title>Funding</title>
<p>This work presented here was part of a FOM-program entitled &#x201C;A Single Molecule View on Protein Aggregation&#x201D; (No. 127). We acknowledge generous funding from the work funded by the erstwhile Foundation for Fundamental Research on Matter (FOM), now subsumed by the Dutch Research Council (NWO). We also acknowledge support from NanoNextNL, a micro- and nanotechnology consortium of the Government of The Netherlands and 130 partners.</p>
</sec>
<ack><p>We thank Mireille Claessens (University of Twente, Enschede, Netherlands) for many helpful and stimulating discussions.</p>
</ack>
<sec id="S6" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="S7" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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