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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Oncol.</journal-id>
<journal-title>Frontiers in Oncology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Oncol.</abbrev-journal-title>
<issn pub-type="epub">2234-943X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fonc.2022.865779</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Oncology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Low MxA Expression Predicts Better Immunotherapeutic Outcomes in Glioblastoma Patients Receiving Heat Shock Protein Peptide Complex 96 Vaccination</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Yi</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1060592"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Chunzhao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chi</surname>
<given-names>Xiaohan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Huang</surname>
<given-names>Xijian</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gao</surname>
<given-names>Hua</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Ji</surname>
<given-names>Nan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1766884"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhang</surname>
<given-names>Yang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1657847"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>China National Clinical Research Center for Neurological Diseases, Beijing Tiantan Hospital, Capital Medical University</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Beijing Advanced Innovation Center for Big Data-Based Precision Medicine, Beihang University</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Cure &amp; Sure Biotech Co., LTD</institution>, <addr-line>Shenzhen</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Lei Jin, The University of Newcastle, Australia</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Gabriele Multhoff, Technical University of Munich, Germany; Pramod Kumar Srivastava, University of Connecticut, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Yang Zhang, <email xlink:href="mailto:zhangyang@bjtth.org">zhangyang@bjtth.org</email>; Nan Ji, <email xlink:href="mailto:jinan@mail.ccmu.edu.cn">jinan@mail.ccmu.edu.cn</email>
</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Neuro-Oncology and Neurosurgical Oncology, a section of the journal Frontiers in Oncology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>07</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>12</volume>
<elocation-id>865779</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>01</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>16</day>
<month>06</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Wang, Li, Chi, Huang, Gao, Ji and Zhang</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Wang, Li, Chi, Huang, Gao, Ji and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Heat shock protein peptide complex 96 (HSPPC-96) has been proven to be a safe and preliminarily effective therapeutic vaccine in treating newly diagnosed glioblastoma multiforme (GBM) (NCT02122822). However, the clinical outcomes were highly variable, rendering the discovery of outcome-predictive biomarkers essential for this immunotherapy. We utilized multidimensional immunofluorescence staining to detect CD4<sup>+</sup> CD8<sup>+</sup> and PD-1<sup>+</sup> immune cell infiltration levels, MxA and gp96 protein expression in pre-vaccination GBM tissues of 19 patients receiving HSPPC-96 vaccination. We observed low MxA expression was associated with longer OS than high MxA expression (48 months vs. 20 months, p=0.038). Long-term survivors (LTS) exhibited significantly lower MxA expression than short-term survivors (STS) (p= 0.0328), and ROC curve analysis indicated MxA expression as a good indicator in distinguishing LTS and STS (AUC=0.7955, p=0.0318). However, we did not observe any significant impact of immune cell densities or gp96 expression on patient outcomes. Finally, we revealed the association of MxA expression with prognosis linked to a preexisting TCR clone (CDR3-2) but was independent of the peripheral tumor-specific immune response. Taken together, low MxA expression correlated with better survival in GBM patients receiving HSPPC-96 vaccination, indicating MxA as a potential biomarker for early recognition of responsive patients to this immunotherapy.</p>
<p><bold>Clinical Trial Registration:</bold> ClinicalTrials.gov (NCT02122822) <uri xlink:href="http://www.chictr.org.cn/enindex.aspx">http://www. chictr.org.cn/enindex.aspx</uri> (ChiCTR-ONC-13003309).</p>
</abstract>
<kwd-group>
<kwd>glioblastoma</kwd>
<kwd>MxA</kwd>
<kwd>gp96</kwd>
<kwd>cancer treatment vaccine</kwd>
<kwd>biomarker</kwd>
<kwd>immune cell infiltration</kwd>
</kwd-group>
<contract-num rid="cn001">81702451, 81930048</contract-num>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content>
</contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="72"/>
<page-count count="9"/>
<word-count count="3891"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Glioblastoma multiforme (GBM) is one of the most lethal brain cancers and accounts for 48.6% of all primary brain malignancies (<xref ref-type="bibr" rid="B1">1</xref>), posing a great threat to human health, as current therapies are minimally effective (<xref ref-type="bibr" rid="B2">2</xref>). Initial surgical resection, adjuvant radiotherapy and chemotherapy with temozolomide constitute the standard-of-care therapy for GBM; however, they yield only a moderate increase in survival, with a reported median overall survival (OS) of 14.6 months (<xref ref-type="bibr" rid="B3">3</xref>) and a 5-year survival rate of less than 10% (<xref ref-type="bibr" rid="B4">4</xref>). Therefore, new therapeutic modalities are urgently needed to improve the outcomes of patients with this deadly brain cancer.</p>
<p>Recent advances in immunotherapies, such as immune checkpoint blockade, have brought substantial improvement in survival for a variety of solid malignancies, including melanoma (<xref ref-type="bibr" rid="B5">5</xref>), non-small-cell lung cancer (<xref ref-type="bibr" rid="B6">6</xref>), breast cancer (<xref ref-type="bibr" rid="B7">7</xref>), and non-Hodgkin lymphoma (<xref ref-type="bibr" rid="B8">8</xref>). In treating GBMs, several novel immune approaches are under development and have generated encouraging results in preclinical studies (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>) as well as in early trials (<xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B12">12</xref>). Heat shock protein glycoprotein 96 kDa (gp96) belongs to the heat shock protein family, mainly locates in the endoplasmic reticulum (ER) and where it functions as a master chaperone. Gp96 has innate capacity of binding tumor-associated antigens (peptides), thereby forming a gp96-peptides complex that can be taken up by antigen-presenting cells, such as dendritic cells, and then elicit both innate and adaptive antitumor immune response (<xref ref-type="bibr" rid="B13">13</xref>). Therefore, after simple purification of the complex from patient tumors, the gp96-peptides complex can be exploited as a personalized multivalent cancer-treatment vaccine, usually termed as heat shock protein peptide complex 96 (HSPPC-96) (<xref ref-type="bibr" rid="B14">14</xref>). HSPPC-96 has exhibited its safety and preliminary clinical efficacy in treating a variety of malignancies (<xref ref-type="bibr" rid="B15">15</xref>&#x2013;<xref ref-type="bibr" rid="B19">19</xref>), that include recurrent (<xref ref-type="bibr" rid="B20">20</xref>) and newly-diagnosed GBMs (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B22">22</xref>). Our previous phase 1 clinical trial has demonstrated the safety and preliminary effectiveness of the heat shock protein peptide complex 96 (HSPPC-96) vaccine in treating newly diagnosed GBM patients (<xref ref-type="bibr" rid="B21">21</xref>). However, similar to other immunotherapies in solid tumors (<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B23">23</xref>), the efficacy of HSPPC-96 vaccination varies greatly, with OS times ranging from 7.5 months to 68.2 months in this cohort of patients (<xref ref-type="bibr" rid="B24">24</xref>). Therefore, the discovery of biomarkers that facilitate the recognition of patients who are likely to respond to immunotherapy is paramount. We found that the post-vaccination tumor-specific immune response (TSIR-post_vac), measured by an IFN-&#x3b3;-releasing enzyme-linked immunospot (ELISPOT) assay on peripheral blood mononuclear cells (PBMCs), was associated with patient survival time (<xref ref-type="bibr" rid="B21">21</xref>). Higher TSIR-post_vac levels predicted better outcomes (<xref ref-type="bibr" rid="B21">21</xref>). We utilized second-generation T cell receptor (TCR) sequencing to examine TCR repertoire features in tumors and revealed the presence of some TCR clones predicting durable survival from HSPPC-96 vaccination (<xref ref-type="bibr" rid="B24">24</xref>). However, neither the ELISPOT assay nor TCR sequencing is a common clinical method, which limits the wide application of the aforementioned biomarkers.</p>
<p>Since protein detection methods, such as immunohistochemical (IHC) staining and enzyme-linked immunosorbent assay (ELISA), are routinely used in the clinical setting, protein marker candidates have more opportunities for translation from bench to bedside. In this study, we applied a multidimensional immunofluorescence (MIF) method to detect the infiltrative levels of immune cells (CD4<sup>+</sup>, CD8<sup>+</sup> and PD-1<sup>+</sup> immune cells) and the protein expression of MxA (encoded by an interferon-stimulating gene MX1) and gp96 (glycoprotein 96, a major component of HSPPC-96 vaccine) in pre-vaccination GBM tissues and examined their value in predicting the therapeutic outcomes of HSPPC-96 vaccination. We hypothesized that the levels of these biomarker candidates would reflect a natural state of antitumor response within tumors that would correlate with immunotherapeutic outcomes because they have been reported to directly engage adaptive/innate antitumor immune responses (<xref ref-type="bibr" rid="B25">25</xref>&#x2013;<xref ref-type="bibr" rid="B28">28</xref>), and some have been used&#xa0;as outcome-predictive biomarkers for other cancer immunotherapies (<xref ref-type="bibr" rid="B29">29</xref>&#x2013;<xref ref-type="bibr" rid="B31">31</xref>). We observed that low MxA expression correlated with better outcomes in this HSPPC-96 vaccinated cohort, reflecting the potential of MxA as a protein biomarker for the early recognition (prior to vaccination) of responsive patients to this immunotherapy.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Patients</title>
<p>We retrospectively examined the expression of the studied proteins by using formalin-fixed and paraffin-embedded (FFPE) tumor tissues that were collected during neurosurgical resection (prior to vaccination) from a cohort of 19 GBM patients receiving HSPPC-96 vaccination in an open-label, single-arm, phase I clinical trial (<xref ref-type="bibr" rid="B21">21</xref>). The trial was aimed at determining the safety and preliminary effectiveness of HSPPC-96 vaccination in treating newly diagnosed GBMs with standard-of-care therapy (<xref ref-type="bibr" rid="B21">21</xref>). After postoperative concurrent chemoradiotherapy, all the included patients received a total of six doses of the vaccine, with a 25-&#x3bc;g dose every week. The vaccine was generated through extracting the gp96 and its binding peptides from fresh tumor tissue according to the procedure described previously (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B32">32</xref>). Cure &amp; Sure Biotech Co. Ltd. was responsible for the vaccine production, following good manufacturing practice guidelines. A total of 20 patients were vaccinated in this trial; 19 patients with complete follow-up information were included for survival analysis, yielding a median progression-free survival (PFS) of 11.0 months and a median OS of 31.4 months in these patients (<xref ref-type="bibr" rid="B21">21</xref>). We continued follow-up with all survivors approximately 1 year after the end of the trial and updated the survival data, yielding a 20% PFS and a 40% OS at 3 years for all vaccinated patients (<xref ref-type="bibr" rid="B24">24</xref>). The clinical trial was approved by the ethics committee of Beijing Tiantan Hospital (JS2012-001-03) and was registered at ClinicalTrials.gov (NCT02122822) and <uri xlink:href="http://www.chictr.org.cn/enindex.aspx">http://www.chictr.org.cn/enindex.aspx</uri> (ChiCTR-ONC-13003309). Written informed consent was obtained from all participants.</p>
<p>The baseline characteristics of the included patients, such as sex, age at diagnosis, Karnofsky performance status (KPS) scale (range 0-100%), MGMT promoter methylation status, IDH 1/2 mutations and TERT promoter mutations, were reported by our previous study (<xref ref-type="bibr" rid="B21">21</xref>) and are shown in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplemental Table&#xa0;1</bold>
</xref>.</p>
</sec>
<sec id="s2_2">
<title>MIF and Image Analysis</title>
<p>We used OPALTM 7-color Manual IHC kits (NEL811001KT, Akoya Bioscience, Marlborough, MA, USA) to conduct MIF on the FFPE tissues. After deparaffinization and rehydration, the slides were subjected to a procedure that was optimized for each antigen. The experimental details are summarized in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplemental Table&#xa0;2</bold>
</xref>.</p>
<p>Images were obtained on a Vectra system (Vectra Polaris 1.0.7, Akoya Bioscience, Marlborough, MA, USA) and analyzed by Inform software (2.4.2, Akoya Bioscience, Marlborough, MA, USA). Densities of infiltrating immune cells (CD4<sup>+</sup>, CD8<sup>+</sup> and PD-1<sup>+</sup> cells) were semi-quantified as counts per mm<sup>2</sup> of tumor area. The expression of gp96 and MxA was semi-quantified as the staining extent, which was defined as the number of nuclei of positively stained cells divided by the number of all nuclei in the section. The counts and staining extent were automatically calculated by Inform software and then manually adjusted by an experienced pathologist.</p>
</sec>
<sec id="s2_3">
<title>Statistical Analysis</title>
<p>All statistical analyses were performed using SPSS software version 26.0 (IBM, New York, United States). Continuous data were compared using the Mann&#x2013;Whitney U test or Kruskal&#x2013;Wallis nonparametric test. Spearman correlation analysis was used to examine the associations. Kaplan&#x2013;Meier analysis was used to estimate PFS and OS, and the log-rank test was applied to estimate between-group PFS/OS differences. A Cox regression model was fitted to select independent prognostic factors. A 2-tailed&#xa0;P&#xa0;value of less than 0.05 was considered significant. GraphPad Prism 6 (GraphPad Software, Inc., San Diego, CA) was used to plot the figures.</p>
</sec>
</sec>
<sec id="s3">
<title>Results</title>
<sec id="s3_1">
<title>Immune Cell Densities and MxA/gp96 Expression Varied Greatly Among GBM Tissue Samples</title>
<p>Our previous study demonstrated that HSPPC-96 vaccination is a safe and preliminarily effective immunotherapy for the treatment of newly diagnosed GBMs (<xref ref-type="bibr" rid="B21">21</xref>). Despite these encouraging results, clinical outcomes remain highly variable, such that a fraction of patients did not benefit from the therapy compared with the standard treatment (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B24">24</xref>). Therefore, the identification of patients who are more likely to obtain a survival benefit prior to vaccination is vital for this immunotherapy. We hypothesized that the immune features within the tumor microenvironment would contain predictive biomarkers for treatment efficacy, since the clinical efficacy of vaccines partly relies on boosting a pre-existing intra-tumor antitumor immune response (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B34">34</xref>), which would be influenced by these immune features.</p>
<p>Herein, we utilized MIF to detect immune features, including densities of immune cells (CD4<sup>+</sup> T cells, CD8<sup>+</sup> T cells and PD1<sup>+</sup> cells) and protein expression of gp96 (a component of the HSPPC-96 vaccine) and MxA (an interferon-stimulating gene product, whose expression reflects interferon-pathway activity) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>), in FFPE tumor samples that were collected prior to vaccination from all 19 included patients with complete follow-up (<xref ref-type="bibr" rid="B24">24</xref>). Consistent with the findings of previous studies (<xref ref-type="bibr" rid="B35">35</xref>), the infiltrative levels of immune cells among samples varied greatly, with median levels of 78/mm<sup>2</sup> (range 2-356/mm<sup>2</sup>), 20/mm<sup>2</sup> (range 1-185/mm<sup>2</sup>) and 14/mm<sup>2</sup> (range 1-101 mm<sup>2</sup>) for CD4<sup>+</sup> T cells, CD8<sup>+</sup> T cells and PD1<sup>+</sup> cells, respectively. We also observed higher infiltration of CD4<sup>+</sup> T cells than CD8<sup>+</sup> T cells (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplemental Figure&#xa0;1</bold>
</xref>) (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>). Both gp96 and MxA were detected by cytoplasmic staining (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>) and were ubiquitously expressed in all the samples. However, the extent of staining in each sample also varied significantly among samples, with ranges of 2.2%-22% and 1.5%-49% for gp96 and MxA, respectively. These results indicate a significant variance in immune features among the tumor samples prior to vaccination, which provides a basis for further analyzing their impacts on clinical outcomes.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Representative staining of CD4+, CD8+, and PD-1+ cells and gp96 and MxA in GBM tissues.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-865779-g001.tif"/>
</fig>
</sec>
<sec id="s3_2">
<title>Low MxA Expression Was Associated With Favorable Prognosis</title>
<p>We next explored the potential of these immune features as predictive biomarkers of treatment efficacy. We used the updated follow-up data that were published previously (<xref ref-type="bibr" rid="B24">24</xref>). After a median follow-up of 58.9 months, the median PFS and OS were 11.0 months and 31.4 months, respectively; PFS was 20% (4/20) and OS was 40% (8/20) at 3 years for all 19 vaccinated patients (<xref ref-type="bibr" rid="B24">24</xref>). According to the median levels of these immune features, we separately grouped the patients into the high and low groups. We did not observe a significant impact of the densities of immune cells, including CD4<sup>+</sup> T cells, CD8<sup>+</sup> T cells and PD1<sup>+</sup> cells, on the survival of these patients (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A&#x2013;C</bold>
</xref>). However, high gp96 expression tended to be negatively correlated with patient OS (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>), although the correlation did not reach a significant level (p=0.364) due to the limited sample size. Interestingly, we observed that the expression of MxA negatively impacted the OS of these patients, with the MxA-low expression group exhibiting a median OS of 48 months compared with 20 months in the MxA-high expression group (p=0.038) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2E</bold>
</xref>). This finding indicates the potential of MxA as a predictive biomarker for HSPPC-96 vaccination efficacy.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Low MxA expression was associated with favorable prognosis. Kaplan&#x2013;Meier estimates of progression-free survival and overall survival in HSPPC-96- vaccinated GBM patients, grouped by the median CD4+ <bold>(A)</bold> CD8+ <bold>(B)</bold> and PD-1+ cell <bold>(C)</bold> densities and gp96 <bold>(D)</bold> and MxA <bold>(E)</bold> expression. Log-rank tests were applied to estimate differences. Vertical lines indicate censored time points.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-865779-g002.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Low MxA Expression Was Associated With Long-Term Survival</title>
<p>We grouped the vaccinated patients into long-term survivors (LTS) and short-term survivors (STS) according to whether their survival time was over three years, a common cut-off in survival to define LTS in GBM clinical studies (<xref ref-type="bibr" rid="B38">38</xref>, <xref ref-type="bibr" rid="B39">39</xref>). Among the 19 included patients, 8 patients were LTS, and 11 were STS. As expected, the LTS group exhibited significantly lower MxA expression than the STS group (P = 0.0328) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). Furthermore, receiver operating characteristic (ROC) curve analysis indicated that MxA expression is a good indicator for distinguishing LTS and STS (AUC=0.7955, P=0.0318) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). Since LTS is a subset of patients who are most likely responsive to immunotherapy, these results indicate that MxA could be a potential biomarker for the early recognition of these responders prior to vaccination initiation.</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Low MxA expression was associated long-term survival. Comparison of MxA protein expression between long-term survivors (LTS, &#x2265;3-y overall survival) and short-term survivors (STS, &lt;3-y overall survival), Wilcoxon nonparametric test <bold>(A)</bold>. Receiver operating characteristic (ROC) curve analysis for evaluating the capacity of MxA protein expression to distinguish between LTS and STS <bold>(B)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-865779-g003.tif"/>
</fig>
</sec>
<sec id="s3_4">
<title>Association of MxA Expression With Prognosis Was Linked to a Preexisting TCR Clone But Was Independent of TSIR</title>
<p>We next investigated the underlying mechanisms that link low expression to better clinical outcomes. We previously used an ELISPOT assay to evaluate the TSIR levels in PBMCs collected before and after HSPPC-96 vaccination (<xref ref-type="bibr" rid="B21">21</xref>). We observed that HSPPC-96 vaccination increased TSIR levels by 2.3-fold, and the level of TSIR post-vaccination was closely associated with patient survival (<xref ref-type="bibr" rid="B21">21</xref>). Based on these observations, we first reasoned that low MxA expression could be associated with increased levels of TSIR post-vaccination, thereby leading to favorable outcomes. However, we did not observe any significant correlation between MxA expression and the levels of three TSIR indexes, including TSIR pre-vaccination (TSIR_pre_vac, <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>), TSIR post-vaccination (TSIR_post_vac, <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>) and fold change of TSIR from pre- to post-vaccination (TSIR_fc_vac, <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). Moreover, a fitted Cox regression model, including age, TSIR_post_vac and MxA expression, also revealed MxA expression as an independent prognosticator of outcomes (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplemental Figure&#xa0;2</bold>
</xref>). Therefore, MxA expression and TSIR_post_vac independently influenced the outcomes in this vaccinated cohort.</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Association of MxA expression with prognosis linked to a preexisting TCR clone but was independent of TSIR. Pearson correlation of the expression of MxA protein with TSIR pre-vaccination <bold>(A)</bold>, TSIR post-vaccination <bold>(B)</bold>, and fold change of TSIR from pre- to post-vaccination <bold>(C)</bold> in 19 vaccinated patients. <bold>(D)</bold> Comparison of TCR clonotypes specific for long-term survivors between the high MxA protein expression group (MxA high: expression of MxA protein &gt; the median value) and the low MxA protein expression group (MxA low: expression of MxA protein &#x2264; the median value), Wilcoxon nonparametric test. Continuous data were compared using the Wilcoxon nonparametric test.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fonc-12-865779-g004.tif"/>
</fig>
<p>We used TCR sequencing to uncover the TCR repertoire features of tumor-infiltrating lymphocytes in LTS and discovered that four TCR clones were significantly enriched in the LTS group, and the presence of these clones was associated with favorable outcomes (<xref ref-type="bibr" rid="B24">24</xref>). Therefore, we next explored whether the link of MxA expression to outcomes was associated with the unbalanced distribution of these TCR clones. We compared the frequencies of these clones, represented as complementarity determining region 3 (CDR3), which determines the specificity of a given TCR clone, between the high- and low-MxA expression groups. As a result, we found an absence of CDR3-2 in the high-MxA expression group (p=0.021) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>). Since the presence of CDR3-2 was associated with long-term survival in this cohort as well as in another peptide vaccine trial on gliomas (<xref ref-type="bibr" rid="B33">33</xref>), we reasoned that the negative impact of MxA expression on CDR3-2 presence could be related to its inverse correlation with patient survival time. However, given the limited sample size of this study, this impact should be further validated in another HSPPC-96 vaccinated cohort with a larger population. The intrinsic mechanism remains unclear and requires further exploration.</p>
</sec>
</sec>
<sec id="s4">
<title>Discussion</title>
<p>Immunotherapy has emerged as a primary therapeutic option for a variety of malignancies (<xref ref-type="bibr" rid="B40">40</xref>&#x2013;<xref ref-type="bibr" rid="B44">44</xref>) and has exhibited encouraging results in early trials on GBMs (<xref ref-type="bibr" rid="B45">45</xref>&#x2013;<xref ref-type="bibr" rid="B49">49</xref>). HSPPC-96 is a personalized multivalent antitumor vaccine that has demonstrated its low toxicity and promising clinical results for the treatment of a variety of malignancies in preclinical models (<xref ref-type="bibr" rid="B50">50</xref>, <xref ref-type="bibr" rid="B51">51</xref>) as well as early-phase trials (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B52">52</xref>). However, the high variance in immunotherapeutic efficacy remains one of the biggest challenges facing this immunotherapy (<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B53">53</xref>). In our HSPPC-96 vaccinated cohort, the OS time varied greatly, ranging from 7.5 to 68.2 months (<xref ref-type="bibr" rid="B24">24</xref>). Thus, the identification of patients who are more likely to respond to or benefit from immunotherapy is vital for this novel therapeutic modality (<xref ref-type="bibr" rid="B24">24</xref>). Although the lack of correlation of clinical activity to immune responses has been widely noted (<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B54">54</xref>&#x2013;<xref ref-type="bibr" rid="B58">58</xref>), we still used the ELISPOT assay (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B24">24</xref>) and TCR sequencing (<xref ref-type="bibr" rid="B24">24</xref>) to discover the biomarkers related to immune responses for predicting therapeutic outcomes of HSPPC-96 vaccination. We observed that TSIR post-vaccination (<xref ref-type="bibr" rid="B21">21</xref>, <xref ref-type="bibr" rid="B24">24</xref>) and a group of TCR clones (<xref ref-type="bibr" rid="B24">24</xref>) were potential biomarkers for predicting better clinical outcomes. Nevertheless, the timing of detecting TSIR post-vaccination (prohibiting its early recognition), the cost of TCR sequencing and the unavailability of both in a routine clinical setting all limit the wide application of these biomarkers. In this study, we aimed to discover protein biomarkers in tumor tissues for the recognition of patients who would respond to or benefit from HSPPC-96 vaccination at an early time prior to vaccination. We found that MxA is a potential biomarker for the prior-to-vaccination recognition of responsive patients. Since MxA can be detected <italic>via</italic> the method of immunohistochemical staining on FFPE tissues, which has been widely and routinely used for clinical diagnosis, the discovered marker would be more easily translated from bench to bedside.</p>
<p>MxA belongs to a family of large GTPases and has been extensively studied for its broad antiviral activity (<xref ref-type="bibr" rid="B59">59</xref>, <xref ref-type="bibr" rid="B60">60</xref>). It is exclusively induced by interferon-&#x3b1;/&#x3b2; and represents a classical interferon-stimulating gene product (<xref ref-type="bibr" rid="B61">61</xref>&#x2013;<xref ref-type="bibr" rid="B63">63</xref>). Therefore, a large number of studies applied MxA expression as an indicator for measuring the activity of the interferon-&#x3b1;/&#x3b2; signalling pathway (<xref ref-type="bibr" rid="B62">62</xref>, <xref ref-type="bibr" rid="B63">63</xref>). Meanwhile, recent findings have suggested MxA as an oncoprotein in breast cancer (<xref ref-type="bibr" rid="B26">26</xref>), as it promotes tumor cell invasion and proliferation. In this study, we found that high MxA expression deteriorated the immunotherapeutic efficacy of HSPPC-96 vaccination (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2E</bold>
</xref>). With respect to the underlying mechanisms explaining the detrimental effect of MxA expression, we speculate that high MxA expression reflects a strong autocrine activation of the interferon-&#x3b1;/&#x3b2; signaling pathway (<xref ref-type="bibr" rid="B64">64</xref>) that has been proven to dampen the antitumor immune response by impairing the immunogenicity of glioma cells (<xref ref-type="bibr" rid="B61">61</xref>). Additionally, the pro-tumor effect of MxA (<xref ref-type="bibr" rid="B26">26</xref>, <xref ref-type="bibr" rid="B65">65</xref>) itself would also mediate its negative impact on the vaccination effectiveness. Therefore, this result also suggests a possible mechanism for the immune evasion of GBM cells against HSPPC-96 vaccination, thus providing possible molecular targets to be manipulated for further improving the therapeutic efficacy.</p>
<p>Nevertheless, we did not find any evidence that high MxA expression suppressed the antitumor immune response in peripheral blood (<xref ref-type="fig" rid="f4">
<bold>Figures&#xa0;4A&#x2013;C</bold>
</xref>), suggesting that the immune evasion mechanism is not exerted at the early stage when antitumor T cells are activated in blood, but could be at the late stage after these T cells infiltrate the tumors. Interestingly, we found that high MxA expression was associated with loss of a TCR clone, CDR3-2 (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4D</bold>
</xref>), that predicted a durable survival in glioma patients receiving therapeutic peptide vaccination (<xref ref-type="bibr" rid="B24">24</xref>, <xref ref-type="bibr" rid="B33">33</xref>). Since this TCR clone, shared by LTS, could reflect a pre-existing T cell-mediated immune response against GBM cells (<xref ref-type="bibr" rid="B24">24</xref>), we speculated that the loss or downregulation of the pre-existing antitumor immune response within tumors could contribute to the inverse correlation of high MxA expression with poorer outcomes. However, the underlying mechanisms remain elusive, requiring further exploration.</p>
<p>In this study, we also investigated whether the pre-existing levels of T cell infiltration could affect the immunotherapeutic efficacy of HSPPC-96 vaccination, since they are widely recognized as indicators predicting patients&#x2019; response to immunotherapies, such as immune checkpoint blockade (<xref ref-type="bibr" rid="B11">11</xref>, <xref ref-type="bibr" rid="B66">66</xref>, <xref ref-type="bibr" rid="B67">67</xref>). However, we did not observe any correlation of T cell infiltration levels, in terms of CD8<sup>+</sup>, CD4<sup>+</sup> and PD-1<sup>+</sup> cell densities, with clinical outcomes (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A&#x2013;C</bold>
</xref>). Considering that the presence of some TCR clones was linked to better immunotherapeutic outcomes in this cohort (<xref ref-type="bibr" rid="B24">24</xref>), these results suggest that the amount of a subset of,&#xa0;rather than all, the infiltrative T cells, impacts the vaccination outcomes.</p>
<p>As a major component of the HSPPC-96 vaccine, gp96 is a molecular chaperone in the endoplasmic reticulum (ER) that has been reportedly linked to maintaining the ER stability (<xref ref-type="bibr" rid="B68">68</xref>), mediating unfolded protein responses (<xref ref-type="bibr" rid="B69">69</xref>, <xref ref-type="bibr" rid="B70">70</xref>), promoting tumor invasiveness (<xref ref-type="bibr" rid="B71">71</xref>) as well as facilitating activation of adaptive and innate immune responses (<xref ref-type="bibr" rid="B72">72</xref>). We observed an interesting trend of high gp96 expression linked to unfavorable OS in this cohort (p=0.364), although it did not reach a significant level given the limited sample size. This result indicates an inverse correlation between the natural expression of gp96 and effectiveness of the HSPPC-96 vaccine, a vaccine comprising gp96 and its binding antigenic peptides. This correlation suggests a possible interplay between gp96 expression and an antitumor immune response that is required for the therapeutic effectiveness. Therefore, this correlation and its intrinsic mechanism require further investigation in clinical studies on a larger cohort of patients as well as intensive preclinical studies.</p>
<p>Again, although the correlations of MxA expression with the immunotherapeutic outcomes as well as the CDR3-2 TCR clone are statistically significant, these findings warrant further confirmation in another larger prospective cohort, given the small sample size and retrospective design of this study.</p>
</sec>
<sec id="s5">
<title>Conclusions</title>
<p>In conclusion, we revealed that low expression of MxA correlated with better survival in GBM patients receiving HSPPC-96 vaccination, indicating that MxA is a potential biomarker for the pre-vaccination recognition of responsive patients to this immunotherapy.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s7">
<title>Ethics Statement</title>
<p>The studies involving human participants were reviewed and approved by the ethics committee of Beijing Tiantan Hospital. The patients/participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author Contributions</title>
<p>Conceptualization, YZ and NJ; Data curation, YW and CL; Formal analysis, YW and YZ; Funding acquisition, YZ and NJ; Methodology, YW and CL; Project administration, YZ and NJ; Resources, NJ; Software, YW and XC; Supervision, YZ and NJ; Validation, XH and HG; Visualization, YW; Writing &#x2013; original draft, YW; Writing &#x2013; review and editing, YZ and NJ. All authors have read and agreed to the published version of the manuscript.</p>
</sec>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>National Natural Science Foundation of China (81702451, 81930048), Capital characteristic Clinical Application Project (Z181100001718196), the capital health research and development of special (2022-2-2047).</p>
</sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>Authors XH and HG are employed by Cure &amp; Sure Biotech Co., LTD, Shenzhen, China, 518000.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>We thank Junmei Wang for their help in the initial phase of this study.</p>
</ack>
<sec id="s12" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fonc.2022.865779/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fonc.2022.865779/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document"/>
</sec>
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