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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Pharmacol.</journal-id>
<journal-title>Frontiers in Pharmacology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Pharmacol.</abbrev-journal-title>
<issn pub-type="epub">1663-9812</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">803686</article-id>
<article-id pub-id-type="doi">10.3389/fphar.2021.803686</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Pharmacology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Intestinal Macrophage Autophagy and its Pharmacological Application in Inflammatory Bowel Disease</article-title>
<alt-title alt-title-type="left-running-head">Zheng et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Intestinal Macrophage Autophagy in IBD</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Zheng</surname>
<given-names>Yang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yu</surname>
<given-names>Yang</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Xu-Feng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Sheng-Lan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tang</surname>
<given-names>Xiao-Long</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Xiang</surname>
<given-names>Zheng-Guo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1535253/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>Department of Gastroenterology, 904 Hospital of PLA Joint Logistic Support Force, <addr-line>Wuxi</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>Department of Gastroenterology, The Affiliated Suzhou Hospital of Nanjing Medical University, <addr-line>Suzhou</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/272600/overview">Bo-Zong Shao</ext-link>, General Hospital of Chinese PLA, China</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/288129/overview">Zhe-Qi Xu</ext-link>, Second Military Medical University, China</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/549385/overview">Shu-Ling Wang</ext-link>, Second Military Medical University, China</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Zheng-Guo Xiang, <email>xzg5851@163.com</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Inflammation Pharmacology, a section of the journal Frontiers in Pharmacology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>11</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>12</volume>
<elocation-id>803686</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>10</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>09</day>
<month>11</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Zheng, Yu, Chen, Yang, Tang and Xiang.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Zheng, Yu, Chen, Yang, Tang and Xiang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>Inflammatory bowel disease (IBD), comprised of Crohn&#x2019;s disease (CD) and ulcerative colitis (UC), is a group of chronic inflammatory disorders. IBD is regarded as a severe healthcare problem worldwide, with high morbidity and lethality. So far, despite of numerous studies on this issue, the specific mechanisms of IBD still remain unclarified and ideal treatments are not available for IBD. The intestinal mucosal barrier is vital for maintaining the function of the intestinal self-defensive system. Among all of the components, macrophage is an important one in the intestinal self-defensive system, normally protecting the gut against exotic invasion. However, the over-activation of macrophages in pathological conditions leads to the overwhelming induction of intestinal inflammatory and immune reaction, thus damaging the intestinal functions. Autophagy is an important catabolic mechanism. It has been proven to participate the regulation of various kinds of inflammation- and immune-related disorders via the regulation of inflammation in related cells. Here in this paper, we will review the role and mechanism of intestinal macrophage autophagy in IBD. In addition, several well-studied kinds of agents taking advantage of intestinal macrophage autophagy for the treatment of IBD will also be discussed. We aim to bring novel insights in the development of therapeutic strategies against&#x20;IBD.</p>
</abstract>
<kwd-group>
<kwd>inflammatory bowel disease</kwd>
<kwd>macrophage</kwd>
<kwd>autophagy</kwd>
<kwd>intestinal</kwd>
<kwd>inflammation</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Inflammatory bowel disease (IBD), including Crohn&#x2019;s disease (CD) and ulcerative colitis (UC), is referred to as a group of idiopathic inflammation-related bowel diseases, which mainly affects the ileum, rectum and colon (<xref ref-type="bibr" rid="B23">Dun et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B28">Gallagher et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B72">Mazur et&#x20;al., 2021</xref>). The clinical manifestations of IBD are atypical, including diarrhea, abdominal pain, bloody stools and so on (<xref ref-type="bibr" rid="B57">Li et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B121">Wang et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B132">Yeh et&#x20;al., 2021</xref>). The morbidity of IBD is increasing rapidly in the recent decade, especially in the developed countries, and the diagnosed rate is relatively high in the young and middle-aged people (<xref ref-type="bibr" rid="B67">M&#x2019;Koma, 2013</xref>; <xref ref-type="bibr" rid="B113">Uhlig et&#x20;al., 2021</xref>). So far, the specific mechanisms for the pathogenesis and progression of IBD remain unclarified. According to recent studies, the abnormality of intestinal immune system and inflammatory responses may probably contribute to the onset and development of IBD (<xref ref-type="bibr" rid="B15">Cushing and Higgins, 2021</xref>; <xref ref-type="bibr" rid="B78">Nash et&#x20;al., 2021</xref>). Certain environmental, genetic and infectious factors as well as disturbance of intestinal microbiota homeostasis may serve as vital factors to lead to the pathological state intestinal self-protective immune and inflammatory reaction (<xref ref-type="bibr" rid="B82">Owczarek et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B62">Lloyd-Price et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B7">Bushman et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B93">Ryan et&#x20;al., 2020</xref>).</p>
<p>Currently, the intestinal tract is recognized as not only the largest digesting organ as traditionally considered, but also a critical immune organ, since it is frequently exposed and challenged with exogenous invasive microorganisms in the gut lumen (<xref ref-type="bibr" rid="B27">Fiorucci et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B64">Lu et&#x20;al., 2021</xref>). As a result, a strong and complete intestinal self-defensive system have been developed in fighting against those damaged factors. In the system, the intestinal mucosal barrier has been recognized to play a vital role in protecting against invasive damage and maintaining the intestinal microbiota homeostasis (<xref ref-type="bibr" rid="B74">Mehandru and Colombel, 2021</xref>; <xref ref-type="bibr" rid="B130">Yang and Yu, 2021</xref>; <xref ref-type="bibr" rid="B134">You et&#x20;al., 2021</xref>). It is generally revealed that the intestinal microbiota homeostasis mainly includes three layers, including the mucus layer on the surface, epithelium layer and inflammatory and immune cell layer in the submucosa (<xref ref-type="bibr" rid="B33">Grondin et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B60">Liu et&#x20;al., 2020a</xref>; <xref ref-type="bibr" rid="B102">Shao et&#x20;al., 2021</xref>). The mucus layer is a gel-like layer containing many kinds of proteins, which cover on the surface of the mucosa to get rid of the direct contacting of epithelium and intestinal lumen contents (<xref ref-type="bibr" rid="B24">Engevik et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B16">das Neves et&#x20;al., 2020</xref>). The epithelium layer is referred to as a layer of gut epithelial cells, mainly including intestinal enterocytes, goblet cells, Paneth cells, enteroendocrine cells and so on, functioning in the absorption of nutrition and secretion of certain functional proteins (<xref ref-type="bibr" rid="B103">Shaoul et&#x20;al., 2005</xref>; <xref ref-type="bibr" rid="B35">Haber et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B14">Collins et&#x20;al., 2021</xref>). The immune cell layer in the submucosa is comprised of several kinds of immune- and inflammation-related cells, including macrophages, neutrophils, eosinophils, lymphocytes and so on (<xref ref-type="bibr" rid="B86">Perdue and McKay, 1994</xref>; <xref ref-type="bibr" rid="B84">Pardigol et&#x20;al., 1998</xref>; <xref ref-type="bibr" rid="B40">Hu et&#x20;al., 2021</xref>).</p>
<p>Among all of those immune- and inflammation-related cells of the immune cell layer in the submucosa, macrophages are one of the most studied ones. It has been shown that the gut holds the largest population of macrophages among all organs. Normally, the majority of tissue macrophages are divided into M1 and M2 subtypes, with M1 subtype displaying pro-inflammatory features and M2 subtype as anti-inflammatory and immunosuppressive characteristics (<xref ref-type="bibr" rid="B47">Ke et&#x20;al., 2016a</xref>; <xref ref-type="bibr" rid="B137">Yunna et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B125">Wu et&#x20;al., 2021a</xref>). However, for gut-resident macrophages, they have been reported to hold the characteristics of both M1 and M2 subtypes to produce both pro-inflammatory cytokines including TNF-&#x3b1; and anti-inflammatory cytokines such as IL-10 (<xref ref-type="bibr" rid="B123">Weber et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B47">Ke et&#x20;al., 2016a</xref>). Intestinal macrophages have been revealed to play a vital role in the protection of the gut against exotic invasion and damage via the engulfment and presentation of invading antigens to other immune cells for clearance and killing (<xref ref-type="bibr" rid="B114">Vannella and Wynn, 2017</xref>; <xref ref-type="bibr" rid="B77">Muller et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B116">Viola and Boeckxstaens, 2020</xref>). However, the overwhelming activation of such self-protective immune and inflammatory responses induced by macrophages may lead to the disturbance of gut functions and intestinal microbiota homeostasis, thus resulting in certain gut diseases such as IBD (<xref ref-type="bibr" rid="B5">Baumgart and Carding, 2007</xref>; <xref ref-type="bibr" rid="B117">Wallace et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B25">Fan et&#x20;al., 2017</xref>). Consequently, regulating the abnormality of inflammatory and immune reaction mediated by intestinal macrophages may serve as a potential and promising strategy for the treatment of&#x20;IBD.</p>
<p>Autophagy is a self-eating catabolic cellular pathway, through which some long-lived proteins or cytoplasmic organelles are degraded and recycled by the integration with lysosomes to maintain cellular homeostasis and normal functions (<xref ref-type="bibr" rid="B118">Wang et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B19">Devis-Jauregui et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B56">Li et&#x20;al., 2021</xref>). Autophagy has been reported to produce a regulatory effect in various kinds of diseases. In inflammatory and immune diseases, baseline and properly induced autophagy have been proven to effectively alleviate the onset and development of diseases via the suppression of the overwhelming inflammatory and immune reaction (<xref ref-type="bibr" rid="B89">Racanelli et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B12">Chimienti et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B73">McCormick et&#x20;al., 2021</xref>). Autophagy has also been shown to have close connection with many forms of inflammatory and immune responses in cells, such as the inflammasomes and neutrophil extracellular traps, apoptosis and necrosis (<xref ref-type="bibr" rid="B65">Luo et&#x20;al., 2021a</xref>; <xref ref-type="bibr" rid="B22">Dong et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B87">Qin et&#x20;al., 2021</xref>). As a result, uncovering the role and underlying mechanisms of autophagy in inflammation-related disorders is necessary and vital for the development of effective therapeutic strategies. Here in this paper, the role of intestinal macrophage autophagy in IBD as well as its pharmacological applications will be reviewed and discussed based on current related studies. We hope to provide insights in the development of new strategies against&#x20;IBD.</p>
</sec>
<sec id="s2">
<title>2 Autophagy in Inflammatory Bowel Disease</title>
<sec id="s2-1">
<title>2.1 Biological Features of Autophagy</title>
<p>The word &#x201c;autophagy&#x201d; derives from Greet roots &#x201c;auto&#x201d; (self) and &#x201c;phagy&#x201d; (eating), which means &#x201c;to eat itself&#x201d; (<xref ref-type="bibr" rid="B133">Yoshimura et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B45">Joffre et&#x20;al., 2021</xref>). Autophagy is a vital cellular catabolic pathway for degrading damaged proteins and organelles to recycle relying on lysosomes (<xref ref-type="bibr" rid="B19">Devis-Jauregui et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B120">Wang et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B131">Yao et&#x20;al., 2021</xref>). After initially reported in the 1950s, the process of autophagy was systematically uncovered by Dr. Yoshinori Ohsumi, who was awarded to the 2016 Nobel Prize in Medicine or Physiology (<xref ref-type="bibr" rid="B92">Rubinsztein and Frake, 2016</xref>; <xref ref-type="bibr" rid="B124">Wollert, 2019</xref>). So far, three kinds of classic forms of autophagy have been described, namely microautophagy, macroautophagy and chaperone-mediated autophagy (<xref ref-type="bibr" rid="B17">Dash et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B58">Lin et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B111">Trelford and Di Guglielmo, 2021</xref>). Besides, according to the difference of degrading substrates, several kinds of selective autophagy have also been recognized and reported in various kinds of diseases, including mitophagy, pexophagy, reticulophagy, xenophagy and so on (<xref ref-type="bibr" rid="B50">Kuma et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B56">Li et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B128">Xu et&#x20;al., 2021</xref>). Since macroautophagy is so far the most studied form of autophagy, here in this paper, the characteristics of macroautophagy and its roles in IBD will be mainly discussed (hereafter referring to &#x201c;autophagy&#x201d;).</p>
<p>Over the few decades since the initial description of autophagy, there are more than 30&#x20;autophagy-related genes (ATGs) reported to be vital in the process of autophagy (<xref ref-type="bibr" rid="B39">Hu, 2019</xref>; <xref ref-type="bibr" rid="B46">Kamel et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B139">Zhang et&#x20;al., 2021</xref>). The process of autophagy is generally divided into two steps, including the formation of the autophagosome and integration with the lysosome to form the autolysosome (<xref ref-type="bibr" rid="B118">Wang et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B135">Yu et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B13">Colletti et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B63">Lorincz and Juhasz, 2020</xref>; <xref ref-type="bibr" rid="B107">Tan and Chen, 2021</xref>). Under the challenge of stressful conditions, inflammation, nutrient insufficiency or ischemia, autophagy is initiated via the triggering of the first step. In the first step, the autophagy-related proteins including ATG13, ATG101, Unc-51-like kinase 1 (ULK1) and focal adhesion kinase family interacting protein of 200&#xa0;kD (FIP200) are integrated to form the ATG1 complex, which subsequently lead to the assembly of Becline-1, ATG14, VSP15 and VSP34 to form the Class III phosphatidylinositol 3-kinase (PI3K) complex. The activation of Class III PI3K signaling promote the nucleation of membrane to form the single-layer and cup-shaped phagophore. The membrane further expanded and lengthened along with the formation of ATG5-ATG12-ATG16L1 complex and participation of ATG8 [well known as &#x201c;light chain 3 (LC3)&#x201d;], which leads to the formation of the double-membrane and cycled autophagosome. The function of autophagosome is to facilitate cargo recruitment and engulfment. In the second step, with the participation of ATG3, ATG4 and ATG7, autophagosome fuses with the lysosome to form the autolysosome, which is regarded as the functional unit of autophagy. In the process of autophagy, Class I PI3K signaling pathway has been revealed as a classic autophagy inhibiting pathway, with the downstream proteins including Class I PI3K, Akt and mammalian target of rapamycin complex 1 (mTORC1) (<xref ref-type="bibr" rid="B136">Yu et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B4">Aoki and Fujishita, 2017</xref>; <xref ref-type="bibr" rid="B119">Wang et&#x20;al., 2017</xref>).</p>
<p>Recently, the roles of autophagy in various kinds of diseases have been increasingly studied. In central nervous system, it has been demonstrated that autophagy plays a protective role in the cerebral ischemic stroke via the inhibition of neuronal apoptosis in patients and oxygen-glucose deprivation (OGD)-induced models (<xref ref-type="bibr" rid="B36">Han et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B2">Ahsan et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B108">Tang et&#x20;al., 2021</xref>). In addition, autophagy has been shown to alleviate the severity of symptoms through the suppression of inflammatory reaction in patients with multiple sclerosis and experimental autoimmune encephalomyelitis (EAE) mice models (<xref ref-type="bibr" rid="B37">Hassanpour et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B20">Di Rita and Strappazzon, 2021</xref>; <xref ref-type="bibr" rid="B131">Yao et&#x20;al., 2021</xref>). In cardiovascular diseases, autophagy has been revealed to alleviate the formation of macrophage-derived foam cells, thus producing a protective effect on the pathogenesis and progression of atherosclerosis and the subsequent myocardial ischemia (<xref ref-type="bibr" rid="B98">Shao et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B81">Ouimet et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B51">Kumar et&#x20;al., 2021</xref>). So far, the role of autophagy in IBD, especially in intestinal macrophages, has been drawn increasing attention to by researchers. The effects of intestinal macrophage autophagy will be detailly described and discussed based on the reviewing of related previous studies in the following contents.</p>
</sec>
<sec id="s2-2">
<title>2.2 Intestinal Macrophage Autophagy in Inflammatory Bowel Disease</title>
<p>Autophagy has been revealed to have close crosstalk with many inflammatory and immune responses. So far, autophagy in intestinal macrophages has been demonstrated to play a vital role in the regulation of IBD. The mutation of autophagy-related genes has been shown to produce a detrimental effect on the pathogenesis and progression of IBD. In addition, autophagy has also been shown to contribute to modulating intestinal inflammation and maintaining intestinal microbiota homeostasis. Those points of contents will be discussed in this section, respectively (illustrated in <xref ref-type="fig" rid="F1">Figure&#x20;1</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Illustration of the role of intestinal macrophage autophagy in IBD. Under the challenge of certain pathological conditions including exotic invasion, intestinal microbiota dysbiosis and abnormal inflammation and immunity, autophagy process in macrophages is induced, which results in the suppression of intestinal inflammation and regulation of intestinal microbiota. Those effects produced by the induction of macrophage autophagy contribute to the protection against IBD. Several kinds of agents have been proven to alleviate IBD taking advantage of intestinal macrophage autophagy, including receptors and receptor regulators (optineurin, cannabinoid receptor 2, alpha7 nicotinic acetylcholine receptor) and inflammasome regulators (GL-V9, andrographolide, kynurenic acid, evodiamine), etc.</p>
</caption>
<graphic xlink:href="fphar-12-803686-g001.tif"/>
</fig>
<sec id="s2-2-1">
<title>2.2.1&#x20;Autophagy-Related Gene Mutation</title>
<p>So far, several autophagy-related genes are vital in the process of intestinal macrophage autophagy (<xref ref-type="bibr" rid="B38">Homer et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B85">Parkes, 2012</xref>; <xref ref-type="bibr" rid="B96">Saxena et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B97">Schwerd et&#x20;al., 2017</xref>). The mutation of such genes, including <italic>Atg16l1</italic>, immunity-related GTPase M (<italic>Irgm</italic>), nucleotide-binding oligomerization domain-containing protein 2 (<italic>Nod2</italic>) and so on, has been reported to contribute to the pathogenesis and progression of IBD. In patients with CD, the existence of polymorphism of <italic>Atg16l1</italic>, <italic>Nod2</italic> and <italic>Irgm</italic> in macrophages has been shown to be the etiology of CD via leading to the deficiency of autophagy (<xref ref-type="bibr" rid="B8">Caprilli et&#x20;al., 2010</xref>). Monocyte-derived macrophages obtained from patients with CD genotyped for <italic>Nod2</italic>, <italic>Atg16l1</italic> and <italic>Irgm</italic> mutations were reported to be unable to restrict adherent-invasive <italic>Escherichia coli</italic> (AIEC) replication and trigger the abnormality in the inflammatory responses influenced by disease activity (<xref ref-type="bibr" rid="B52">Lapaquette et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B115">Vazeille et&#x20;al., 2015</xref>). In addition, defective <italic>Nod2</italic> function in intestinal macrophages from CD patients was found to lead to a pro-inflammatory cytokine bias relying on the toll-like receptor 2 (TLR2) signaling (<xref ref-type="bibr" rid="B80">Netea et&#x20;al., 2004</xref>), and loss of wildtype <italic>Nod2</italic> resulted in dysregulated homeostasis of activated fibroblasts and macrophages (<xref ref-type="bibr" rid="B79">Nayar et&#x20;al., 2021</xref>).</p>
<p>In mice models for IBD, it was previously revealed that mice with myeloid <italic>Atg16l1</italic> deficiency largely exacerbated the severity of colitis with the increase of pro-inflammatory cytokine production and decrease of anti-inflammatory cytokine production (<xref ref-type="bibr" rid="B138">Zhang et&#x20;al., 2017a</xref>). The detection of <italic>Atg16l1 T300A</italic> variant in macrophages was also proven as a risk factor for CD, acting as a dominant-negative variant (<xref ref-type="bibr" rid="B138">Zhang et&#x20;al., 2017a</xref>; <xref ref-type="bibr" rid="B29">Gao et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B94">Samie et&#x20;al., 2018</xref>). According to a study of single-nucleotide polymorphism (SNP), the SNP for <italic>Atg16l1</italic> (rs2241880, Thr300Ala) was revealed to be strongly associated with the incidence of CD via caspase-3 activation (<xref ref-type="bibr" rid="B66">Luo et&#x20;al., 2021b</xref>). In addition, <italic>Nod2</italic> was reported to mediate an alleviative effect on dextran sulphate sodium (DSS)-induced colitis mice models via suppressing the gram-positive bacteria invasion and damage, while knocking out <italic>Nod2</italic> abolished such effects (<xref ref-type="bibr" rid="B42">Jamontt et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B44">Jing et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B66">Luo et&#x20;al., 2021b</xref>). For <italic>Irgm</italic>, its loss-of-function mutation was shown to affect the clearance by macrophages of CD-associated AIEC in mice IBD models (<xref ref-type="bibr" rid="B85">Parkes, 2012</xref>).</p>
</sec>
<sec id="s2-2-2">
<title>2.2.2 Modulation of Intestinal Inflammation</title>
<p>As discussed previously, the abnormal induction of intestinal inflammatory reaction contributes greatly to the pathogenesis and progression of IBD. Intestinal macrophages act as an important component for the triggering of inflammation and immune reaction. Deficiency of autophagy has been reported to propose an important event in IBD via the enhancement of macrophage-mediated inflammatory reaction (<xref ref-type="bibr" rid="B97">Schwerd et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B95">Samoila et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B126">Wu et&#x20;al., 2021b</xref>). In patients with IBD, the application of cannabis, a cannabinoid receptor 2 (CB2R) agonist, was shown to alleviate the severity of IBD via the induction of autophagy and suppression of macrophage-mediated inflammation (<xref ref-type="bibr" rid="B109">Tartakover Matalon et&#x20;al., 2020</xref>). Another study conducting on patients revealed that targeting on ATG2B for the inhibition of autophagy by microRNA-143 enhanced the production of macrophage-induced pro-inflammatory cytokines, thus playing a detrimental effect on CD (<xref ref-type="bibr" rid="B59">Lin et&#x20;al., 2018</xref>). High-density lipoprotein (HDL) and apolipoprotein A-I (apoA-I) were reported to suppress the level of intestinal inflammation via autophagy in human intestinal epithelial cell, indicating the intestinal inflammation-suppression effect of autophagy in IBD (<xref ref-type="bibr" rid="B31">Gerster et&#x20;al., 2015</xref>).</p>
<p>In DSS-induced colitis model, it was demonstrated that macrophage-specific V-ATPase subunit ATP6V0D2 significantly alleviated the severity of DSS-induced colitis in mice via restricting the inflammasome activation in macrophages and bacterial infection of the pathogenic <italic>Salmonella typhimurium</italic> (<xref ref-type="bibr" rid="B127">Xia et&#x20;al., 2019</xref>). Those effects were facilitated by the enhancement of autophagosome-lysosome fusion and level of autophagy flux (<xref ref-type="bibr" rid="B127">Xia et&#x20;al., 2019</xref>). In addition, the induction of PTEN-induced putative kinase 1 (PINK1)/Parkin-driven autophagy was shown to protect against DSS-induced colitis through the inactivation of the NLR family pyrin domain containing 3 (NLRP3) inflammasome in macrophages (<xref ref-type="bibr" rid="B69">Mai et&#x20;al., 2019</xref>). A previous study revealed that the induction of AMP-activated protein kinase (AMPK)-induced autophagy could endow the anti-inflammatory properties of intestinal macrophages, thus alleviating DSS-induced colitis (<xref ref-type="bibr" rid="B61">Liu et&#x20;al., 2020b</xref>). In another colitis model induced by trinitro-benzene-sulfonic acid (TNBS), interleukin-33 (IL-33), a well-known anti-inflammatory cytokine, was reported to ameliorate colitis through the enhancement of intestinal macrophage autophagy in the inflammatory gut tissue via regulation of TLR4 signaling pathway (<xref ref-type="bibr" rid="B122">Wang et&#x20;al., 2019</xref>). Furthermore, pharmacological induction of intestinal autophagy via rapamycin, a classic autophagy inducer, was demonstrated to reduce intestinal inflammation from macrophages and improved murine colitis (<xref ref-type="bibr" rid="B68">Macias-Ceja et&#x20;al., 2017</xref>).</p>
</sec>
<sec id="s2-2-3">
<title>2.2.3 Regulation of Intestinal Microbiota</title>
<p>Intestinal microbiota is a vital component of the gut environment (<xref ref-type="bibr" rid="B1">Adak and Khan, 2019</xref>; <xref ref-type="bibr" rid="B32">Gomaa, 2020</xref>; <xref ref-type="bibr" rid="B43">Jarbrink-Sehgal and Andreasson, 2020</xref>). A good intestinal microbiota habitat is necessary for the maintenance of normal gut functions and health for organisms. In normal conditions, four phyla of microbiota are detected to be dominant in the gut of normal human, including <italic>Bacteroidetes</italic>, <italic>Firmicutes</italic>, <italic>Actinobacteria</italic> and <italic>Proteobacteria</italic> (<xref ref-type="bibr" rid="B140">Zhang et&#x20;al., 2017b</xref>; <xref ref-type="bibr" rid="B41">Invernizzi et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B70">Mao et&#x20;al., 2021</xref>). However, dysbiosis of intestinal microbiota has been investigated in patients with various digestive disorders, such as colorectal cancer and IBD (<xref ref-type="bibr" rid="B104">Shin et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B110">Tomasello et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B106">Sun and Shen, 2018</xref>; <xref ref-type="bibr" rid="B26">Fan et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B105">Sultan et&#x20;al., 2021</xref>). Under certain pathologic conditions, some kinds of harmful microbiota are invaded and largely residue in the gut. Among those harmful microbiota, <italic>Escherichia coli</italic> (<italic>E.&#x20;coli</italic>) is the most studied one, which belongs to the family of <italic>Enterobacteriaceae</italic> and is usually detected in the lower intestine (<xref ref-type="bibr" rid="B10">Castillo et&#x20;al., 2005</xref>; <xref ref-type="bibr" rid="B91">Rousset et&#x20;al., 2021</xref>). <italic>E.&#x20;coli</italic>, especially AIEC, have been found to be enriched in the gut of both UC and CD patients (<xref ref-type="bibr" rid="B90">Rolhion and Darfeuille-Michaud, 2007</xref>; <xref ref-type="bibr" rid="B75">Mirsepasi-Lauridsen et&#x20;al., 2019</xref>). The assembly and large residue of AIEC have been proven to be harmful for the gut wall via the disturbance of intestinal microbiota homeostasis and triggering of gut inflammatory reaction (<xref ref-type="bibr" rid="B18">Derer et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B54">Leccese et&#x20;al., 2020</xref>).</p>
<p>So far, modern studies have revealed a positive role of intestinal macrophage autophagy in fighting against the invasion and damage of AIEC. Dysfunctional autophagy was found to lead to overwhelming inflammatory reaction induced by intestinal macrophages and subsequent gut microbiota dysbiosis in CD (<xref ref-type="bibr" rid="B53">Larabi et&#x20;al., 2020</xref>). In addition, the functional autophagy in macrophages contributes greatly to maintaining the ability of macrophages in recognizing and dealing with the invasion of AIEC (<xref ref-type="bibr" rid="B90">Rolhion and Darfeuille-Michaud, 2007</xref>; <xref ref-type="bibr" rid="B8">Caprilli et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B6">Buisson et&#x20;al., 2019</xref>). Deficiency of autophagy was shown to lead to the escape of AIEC from macrophages (<xref ref-type="bibr" rid="B8">Caprilli et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B83">Palmela et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B6">Buisson et&#x20;al., 2019</xref>). Collectively, autophagy is vital to maintain the function of macrophages in dealing with&#x20;AIEC.</p>
</sec>
</sec>
</sec>
<sec id="s3">
<title>3 Applications of Intestinal Macrophage Autophagy in the Treatment of Inflammatory Bowel Disease</title>
<p>As discussed above, intestinal macrophage autophagy plays an important role in the regulation of pathogenesis and progression of IBD. So far, with the efforts of researchers, we are lucky to have several kinds of agents which have been proven to be effective in the alleviation of IBD taking advantage of regulating intestinal macrophage autophagy. Among those agents, two kinds of autophagy regulators, including receptors and receptor regulators, and inflammasome regulators are the most popular and studied ones. As a result, in the following contents, those two kinds of autophagy regulators will be detailly described and discussed, respectively (illustrated in <xref ref-type="fig" rid="F1">Figure&#x20;1</xref> and <xref ref-type="table" rid="T1">Table&#x20;1</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Pharmacological applications of intestinal macrophage autophagy regulators in the treatment of IBD.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Autophagy regulators</th>
<th align="center">Pharmacological mechanisms related to intestinal macrophage autophagy</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Receptors and receptor regulators</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;Optineurin</td>
<td align="left">Maintaining pathogen clearance and regulating cytokine production</td>
</tr>
<tr>
<td align="left">&#x2003;Cannabinoid receptor 2</td>
<td align="left">Regulating AMPK-mTOR-p70S6K signaling pathway</td>
</tr>
<tr>
<td align="left">&#x2003;Alpha7 nicotinic acetylcholine receptor</td>
<td align="left">Inducing the &#x201c;cholinergic anti-inflammatory pathway&#x201d; and regulating AMPK-mTOR-p70S6K signaling pathway</td>
</tr>
<tr>
<td align="left">Inflammasome regulators</td>
<td align="left"/>
</tr>
<tr>
<td align="left">&#x2003;GL-V9</td>
<td align="left">Activating AMPK signaling</td>
</tr>
<tr>
<td align="left">&#x2003;Andrographolide</td>
<td align="left">Downregulating PIK3CA-AKT1-mTOR-RPS6KB1 pathway</td>
</tr>
<tr>
<td align="left">&#x2003;Kynurenic acid</td>
<td align="left">Regulating the kynurenic acid/GPR35 axis</td>
</tr>
<tr>
<td align="left">&#x2003;Evodiamine</td>
<td align="left">Regulating NF-&#x3ba;B pathway</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s3-1">
<title>3.1 Receptors and Receptor Regulators</title>
<p>In the recent few years, several kinds of receptors and receptor regulators have been demonstrated to produce an alleviative effect on IBD. For instance, optineurin, a selective autophagy receptor, has been increasing recognized as a critical factor for the maintenance of pathogen clearance and regulation of cytokine production in macrophages (<xref ref-type="bibr" rid="B112">Tschurtschenthaler and Adolph, 2018</xref>; <xref ref-type="bibr" rid="B129">Xu et&#x20;al., 2020</xref>). It was reported that the activation of optineurin contributed to the alleviation of IBD, especially CD, via the induction of autophagy, thus suppressing the inflammatory responses mediated by intestinal macrophages (<xref ref-type="bibr" rid="B112">Tschurtschenthaler and Adolph, 2018</xref>).</p>
<p>Furthermore, CB2R, a member of the family of G-protein-coupled receptors (GPCR), has been increasingly investigated as an immune and inflammatory modulator (<xref ref-type="bibr" rid="B9">Carbone et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B49">Kong et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B48">Ke et&#x20;al., 2016b</xref>). Unlike CB1R which is majorly expressed in central nervous system, it is mainly located in the immune system including macrophages and other inflammatory and immune cells in periphery tissues (<xref ref-type="bibr" rid="B9">Carbone et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B49">Kong et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B48">Ke et&#x20;al., 2016b</xref>). It was demonstrated that the administration of CB2R agonist HU308 significantly alleviated the severity of DSS-induced colitis in mice via the induction of intestinal macrophage autophagy (<xref ref-type="bibr" rid="B48">Ke et&#x20;al., 2016b</xref>). Those protective effects of CB2R agonist on IBD was proven to be mediated by the AMPK-mTOR-p70S6K signaling pathway, a classic autophagy pathway (<xref ref-type="bibr" rid="B48">Ke et&#x20;al., 2016b</xref>).</p>
<p>In addition, alpha7 nicotinic acetylcholine receptor (&#x3b1;7nAChR), a member of the superfamily of cys-loop cationic ligand-gated channels, has been demonstrated to protect against several kinds of inflammation- and immune-related diseases through the triggering of the &#x201c;cholinergic anti-inflammatory pathway&#x201d; (<xref ref-type="bibr" rid="B11">Cheng and Yakel, 2015</xref>; <xref ref-type="bibr" rid="B88">Qin et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B99">Shao et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B100">Shao et&#x20;al., 2019a</xref>). Nicotine, an &#x3b1;7nAChR non-selective agonist, has been shown to suppress the production of pro-inflammatory cytokines by macrophages via the microRNA-124/signal transducing activator of transcription (STAT) system in IBD (<xref ref-type="bibr" rid="B88">Qin et&#x20;al., 2017</xref>). A previous study revealed that the administration of PNU282987, a selective &#x3b1;7nAChR agonist, protected against DSS-induced colitis via the induction of AMPK-mTOR-p70S6K signaling-mediated autophagy in intestinal macrophages (<xref ref-type="bibr" rid="B100">Shao et&#x20;al., 2019a</xref>).</p>
</sec>
<sec id="s3-2">
<title>3.2 Inflammasome Regulators</title>
<p>The inflammasome, a multi-protein oligomer, is widely recognized as a member of innate immunity and also a special form of inflammatory reaction (<xref ref-type="bibr" rid="B71">Mariathasan et&#x20;al., 2004</xref>). Inflammasome is mainly formed in inflammation- and immune-related cells like macrophages, triggering the substantial inflammatory and immune responses through the recognition of pathogen-associated molecular patterns (PAMPs) or danger-associated molecular patterns (DAMPs) (<xref ref-type="bibr" rid="B3">Alexandre et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B55">Lei-Leston et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B101">Shao et&#x20;al., 2019b</xref>). Inflammasome has been reported to participate in the onset and development of various kinds of inflammation- and immune-related diseases via the production and secretion of certain pro-inflammatory cytokines (<xref ref-type="bibr" rid="B30">Ge et&#x20;al., 2021</xref>; <xref ref-type="bibr" rid="B76">Moretti and Blander, 2021</xref>). So far, an increasing number of studies have investigated the role of macrophage inflammasome in IBD, and autophagy has been widely reported to regulate the level of inflammasome in the&#x20;gut.</p>
<p>According to the recent related studies, several agents have been proven to be effective in the alleviation of IBD taking advantage of inducing autophagy-mediated inflammasome suppression. GL-V9, a small-molecule of AMPK activator, was shown to protect against colitis as well as colitis-associated colorectal cancer through the inhibition of the NLRP3 inflammasome, a well-studied form of inflammasome, by the induction of autophagy in intestinal macrophages (<xref ref-type="bibr" rid="B141">Zhao et&#x20;al., 2017</xref>). Similar effect on colitis and colitis associated colorectal cancer was reported to be produced by another small molecule andrographolide via the downregulation of the PIK3CA-Akt1-mTOR-RPS6KB1 pathway (<xref ref-type="bibr" rid="B34">Guo et&#x20;al., 2014</xref>). In addition, kynurenic acid, an endogenous regulator of social stress-exacerbated colitis, was shown to induce autophagy-dependent degradation of NLRP3 in macrophages through the kynurenic acid/G Protein-Coupled Receptor 35 (GPR35) axis (<xref ref-type="bibr" rid="B142">Zheng et&#x20;al., 2019</xref>). Evodiamine, a chemical component extracted from <italic>Evodiae Fructus</italic>, was shown to suppress the initiation and assembly of the NLRP3 inflammasome via autophagy-mediated regulation of nuclear factor-&#x3ba;B (NF-&#x3ba;B) pathway in macrophages, thus alleviating DSS-induced colitis (<xref ref-type="bibr" rid="B21">Ding et&#x20;al., 2020</xref>).</p>
</sec>
</sec>
<sec id="s4">
<title>4 Conclusion</title>
<p>In this paper, we have reviewed the role of intestinal macrophage autophagy in the pathogenesis and progression of IBD. We have introduced the biological characteristics of autophagy and discussed the role of intestinal macrophage autophagy in IBD based on reviewing the related studies. In addition, two well-studied kinds of autophagy regulators, including receptors and receptor regulators as well as inflammasome regulators were described. Although the mechanisms of intestinal macrophage autophagy in IBD are increasingly investigated in the recent studies, yet the specific mechanisms remain unclarified. Furthermore, few autophagy inducers have been successfully applied in clinical practice. Consequently, to ultimately take advantage of intestinal macrophage autophagy in the treatment of IBD, further studies are demanded on this&#x20;issue.</p>
</sec>
</body>
<back>
<sec id="s5">
<title>Author Contributions</title>
<p>YZ, X-FC, S-LY, and X-LT retrieved concerned literatures and wrote the manuscript. YY drew the figure and made the table. Z-GX revised the manuscript. All authors agreed to be accountable for the contents of the&#x20;work.</p>
</sec>
<sec id="s6">
<title>Funding</title>
<p>This work was supported by General Project of Science and Technology Development Fund of Nanjing Medical University (No. NMUB2019332).</p>
</sec>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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