Abstract
Inwardly-rectifying potassium (Kir) channels contribute to maintenance of the resting membrane potential and regulation of electrical excitation in many cell types. Strongly rectifying Kir channels exhibit a very steep voltage dependence resulting in silencing of their activity at depolarized membrane voltages. The mechanism underlying this steep voltage dependence is blockade by endogenous polyamines. These small multifunctional, polyvalent metabolites enter the long Kir channel pore from the intracellular side, displacing multiple occupant ions as they migrate to a stable binding site in the transmembrane region of the channel. Numerous structure-function studies have revealed structural elements of Kir channels that determine their susceptibility to polyamine block, and enable the steep voltage dependence of this process. In addition, various channelopathies have been described that result from alteration of the polyamine sensitivity or activity of strongly rectifying channels. The primary focus of this article is to summarize current knowledge of the molecular mechanisms of polyamine block, and provide some perspective on lingering uncertainties related to this physiologically important mechanism of ion channel blockade. We also briefly review some of the important and well understood physiological roles of polyamine sensitive, strongly rectifying Kir channels, primarily of the Kir2 family.
Overview
Inward rectification is a property of certain ion channels to preferentially conduct current in the inward direction (“into the cell”). Although many ion channel types exhibit some degree of rectification, this review will focus on the class of inwardly-rectifying potassium (Kir) channels that generate strongly rectifying potassium currents (i.e., with steep voltage dependence). In contrast to voltage gated potassium channels, which require membrane depolarization to open, strongly rectifying Kir channels remain active around the physiological resting membrane potential, and sharply diminish their activity upon membrane depolarization (Nichols and Lopatin, ; Lu, ; Hibino et al., ). This deviation from the outward current rectification observed for the classical “Hodgkin-Huxley” delayed rectifier potassium conductance led to the term “anomalous rectifier” in early literature describing ionic conductances (now known to be Kir channels) with strong inward rectification (Hutter and Noble, ). This unusual voltage dependence relative to most other ion channel types underlies the general functional role of strongly rectifying Kir channels, to contribute a significant potassium conductance when cells are not electrically excited and rapidly silence their activity in response to a depolarizing stimulus. In this way, Kir channels with strong rectification properties contribute to the maintenance of a resting membrane potential, but still allow cellular electrical excitation to proceed.
The mechanism of steeply voltage dependent inward rectification of Kir channels is now well understood to be blockade by endogenous intracellular polyamines (Ficker et al., ; Lopatin et al., ; Fakler et al., ). However, it is important to recognize that the Kir gene family comprises channels with diverse functional properties, and despite their name, many Kir channel types do not exhibit particularly strong or steeply voltage dependent polyamine sensitivity. We will focus this review on the mechanism and structural details of polyamine block of the Kir2 subfamily channels (which are particularly sensitive to polyamines), as well as some of the details of their physiological roles and disruption in genetic channelopathies. It is noteworthy that “weak” inward rectifiers (with shallow voltage dependence, and weak polyamine sensitivity) play many important physiological roles, impacting diverse processes such as hormone secretion (Koster et al., ; Choi et al., ), ion transport in the nephron (Simon et al., 1996), and control of ionic gradients in the inner ear (Scholl et al., 2009). Thus, we also refer readers to a recent broad review that provides an overview of the structure, function, and physiology of the entire Kir channel family as an excellent starting point for further discussion of other Kir channel types (Hibino et al., ).
Discovery and characterization of polyamines as blockers of Kir channels
The discovery of polyamine block as the mechanism of inward rectification was precipitated by the cloning of the first Kir channel genes (Ho et al., ; Kubo et al., ,), and the observation that inward rectification is largely an “extrinsic” property of Kir channels (Lopatin et al., ). By “extrinsic,” we mean that the strength of inward rectification can be reduced or even completely abolished when these channels are removed from the cellular environment (for example, by excision of membrane patches). Hints of the extrinsic nature of the process were apparent in early patch clamp studies of rectification of native strongly rectifying currents in cardiac myocytes, in which the strength of rectification was substantially diminished after excision of membrane patches (Matsuda et al., ; Vandenberg, 1987). However, the voltage dependent block produced by candidate mediators such as Mg2+ ions, did not match up with the steep voltage dependence of rectification observed in intact cells (Matsuda et al., ; Vandenberg, 1987). Fractionation of cell lysates, and their application to cloned Kir channels in excised membrane patches allowed for the identification of fractions that could restore inward rectification (Lopatin et al., ), eventually leading to the recognition of endogenously produced polyamines (and especially spermine, Figure 1A) as cellular elements that generate this electrical property (Ficker et al., ; Lopatin et al., ; Fakler et al., ). Among the naturally-occurring polyamines, spermine is the most potent Kir channel blocker and generates the steepest voltage dependence of block, followed closely by spermidine, while much shorter and less positively charged polyamines (cadaverine, putrescine) are less potent blockers and generate shallower voltage dependence (Section Blocker features essential for steep voltage dependent block) (Ficker et al., ; Lopatin et al., ; Fakler et al., ).
Figure 1
Architecture of Kir channels
Availability of Kir channel clones, together with the recognition of polyamines as “gating particles” that underlie inward rectification, enabled a large body of work that has identified structural motifs of Kir channels that are essential for high affinity polyamine block (Nichols and Lopatin, ; Lu, ; Hibino et al., ). Although channel elements that contribute to polyamine block have been exhaustively studied, subtle but important details underlying this process continue to emerge. This section provides an overview of the three-dimensional structure of Kir channels, and the arrangement of residues that are essential for polyamine block.
Transmembrane domain
The earliest crystal structures of bacterial Kir (“KirBac”) channels revealed a modular architecture that is conserved between prokaryotic and eukaryotic Kir channels. These channels comprise a transmembrane domain (TMD) and a large cytoplasmic domain (CTD) that form an interface near the boundary between the cytoplasm and plasma membrane (Kuo et al., ; Nishida et al., ) (Figure 2A). The TMD is composed of two membrane spanning α-helices, an outer helix (M1) and a pore-lining inner helix (M2) (Tao et al., 2009; Hansen et al., ). These are connected by an extracellular turret region, a short pore helix and the selectivity filter, reminiscent of the transmembrane pore structure in crystal structures of other K+ channels such as KcsA and Kv1.2 (Figure 2B) (Doyle et al., ; Long et al., ). The sequence of the selectivity filter is similar between inward rectifiers and other potassium channel types, however there is some variability in the flanking sequences (Heginbotham et al., ; Nishida et al., ; Tao et al., 2009). Two unique features of the Kir channel selectivity filter region are an ion pair between the intracellular and extracellular sides of the selectivity filter (Figure 2B, cyan), and the presence of a conserved disulfide bond between the extracellular loops of the channel (Figure 2B, green). These are essential for the structural integrity of the selectivity filter and are required for normal channel function (Yang et al., 1997; Leyland et al., ; Cho et al., ). The turret in the outer pore restricts the size of the extracellular opening, and it has been proposed that this structural feature underlies the relative insensitivity of “classical” inwardly rectifying Kir2.x channels to toxins such as tertiapin (Figure 2C) (Jin and Lu, ; Hansen et al., ; Whorton and MacKinnon, 2011). Amino acids that contribute to the bundle crossing region, suspected to act as a gate at the base of the transmembrane helices (Figure 2C), vary between different Kir channel types. In some ligand-gated Kir subfamilies (i.e., Kir6.x, Kir3.x), a large aromatic amino acid (usually phenylalanine) is present and may be important for occluding the pore when channels are closed (Kuo et al., ; Sackin et al., 2005; Rojas et al., ; Khurana et al., ; Whorton and MacKinnon, 2011). In the prototypical strongly rectifying Kir2.x channels, the residue at the bundle crossing is a methionine (M183 in Kir2.1, Figure 2C) (Hansen et al., ).
Figure 2
Cytoplasmic domain
N- and C-terminal segments of neighboring subunits interact to form a large cytoplasmic domain (CTD) that lines up beneath the TMD, extending the transmembrane pore to form a very long obligate permeation pathway for ions and blockers (Figure 2D). In the CTD, a conserved motif generating significant recent interest is the “G-loop” (Figure 2D) (Pegan et al.,
TMD-CTD interface
The CTD and TMD form a close interface generating a continuous permeation pathway that cannot be accessed through “fenestrations” in the sides of the channel (unlike the structurally dissociated cytoplasmic “T1” tetramerization domain and transmembrane domain of voltage-gated channels) (Long et al.,
Regulation of polyamine block by residues in the transmembrane domain
Structure-function studies employing mutagenesis have demonstrated that a single residue in the transmembrane region of the pore is particularly important for high-affinity, steeply voltage-dependent block by spermine and other polyamines. Specifically, Kir2.1 residue D172 (Figure 2C) was the first identified determinant of rectification properties, based on comparisons of a strong rectifier (IRK1, Kir2.1), with a weak rectifier (ROMK1, Kir1.1). In Kir2.1 this residue is an acidic aspartate (D172), whereas in Kir1.1 it is a neutral asparagine (N171). Swapping this residue between these functionally distinct channel types results in substantial transfer of their rectification properties (Lopatin et al.,
Despite its strong influence on rectification properties, it is important to note that the “rectification controller” does not exert an “all-or-none” effect. Some Kir channels that lack an acidic residue at the “rectification controller” (e.g., Kir3.2) have been reported to exhibit fairly strong rectification properties, while the Kir2.1[D172N] mutation weakens (but does not abolish) polyamine binding (Wible et al., 1994; Yi et al., 2001; Guo et al.,
Regulation of polyamine block by residues in the cytoplasmic domain
While the “rectification controller” is clearly an important determinant of polyamine block, chimeric studies also helped to identify residues in the cytoplasmic domain that are involved in polyamine block. Notably, interchanging the cytoplasmic domains of Kir2.1 and Kir1.1 resulted in partial transfer of rectification properties (Taglialatela et al., 1994). Further mutational analysis identified two residues in Kir2.1 (E224 and E299) as important determinants of rectification (Taglialatela et al., 1995; Yang et al., 1995; Kubo and Murata,
Crystallization of isolated cytoplasmic domains and full length eukaryotic Kir channels has led to further identification of pore-lining residues that impact spermine binding (Figure 2D). Two acidic pore-lining residues close to the cytoplasmic entrance of the CTD (D255 and D259) form a “lower ring” of charge that contributes to polyamine block (Figure 2D) (Pegan et al.,
Overall, both the “upper ring” formed by E224/E299, and the “lower ring” formed by D255/D259/F254, exert significant control over the kinetics of spermine block. Of these, only E224 and E299 appear to significantly influence overall stability of spermine binding (mediated primarily by the “rectification controller” interaction in the TMD). This may be due to the closer proximity of this E224/E299 “upper ring” to the transmembrane domain. However, in the context of considering the functional contributions of different residues to polyamine block, it is noteworthy that many amino acids in the Kir pore can exert significant long range effects (Robertson et al.,
Blocker features essential for steep voltage dependent block
In addition to characterization of channel residues involved in polyamine block, detailed characterization of a wide variety of polyamine analogs has led to a description of specific structural requirements of blockers for generation of steeply voltage dependent block, and allowed for diverse approaches to investigate the mechanistic basis of polyamine block (some of the more useful and informative analogs are illustrated in Figures 1B–D). The effects of polyamine analogs of different lengths and valence highlight that movement of charged polyamines through the transmembrane field cannot solely account for the steeply voltage dependent rectification of Kir2.x channels. For example, replacing two amines for hydrocarbons in tetravalent spermine yields a bivalent compound (1,12-diaminododecane, Figure 1B) that recapitulates the steep voltage dependence of spermine block (effective valence of ~4–5 elementary charges) (Pearson and Nichols,
Observations such as these have led to the hypothesis that voltage dependence of polyamine block arises primarily from displacement of potassium ions by the migrating polyamine as it approaches its terminal binding site deep within the Kir pore (shown schematically in Figure 3—note that the exact locations of permeant ions, and their arrangement relative to migrating blockers, are not known). That is, as the blocker moves through the channel pore, obligate displacement of permeant ions ahead of the blocker results in charge movement through the membrane field (even though the blocker itself has traversed little or no fraction of the field). This coupled movement of polyamines (or other blockers) and permeating potassium ions in the pore is consistent with classic observations that polyamine block is tightly coupled to the potassium reversal potential, such that increasing the extracellular potassium concentration shifts the onset of polyamine block to more positive membrane voltages (Hagiwara et al.,
Figure 3

Schematic diagram of polyamine migration and coupled ion movement. Spermine and other polyamines migrate through the channel pore toward a binding site in the TMD, and displace occupant ions ahead of them in the pore. The first binding step involves a low affinity interaction between spermine and various residues in the CTD. The second “deep” binding step involves polyamine migration from the cytoplasmic pore into the channel inner cavity, with a steeper voltage dependence (likely because of displacement of a greater number of ions—note that the specific arrangement of ions relative to the blocker is unknown).
Additional important insights have arisen from the characterization of extended polyamine analogs (with >4 amine groups, Figure 1D) and analogs with altered terminal amines (Figure 1C). Importantly, despite their considerably higher charge, extended polyamine analogs such as the deca-amines depicted in Figure 1D do not exhibit steeper voltage-dependence than spermine (Loussouarn et al.,
Kinetic models of polyamine block, and their physical interpretation
Kinetic models of steeply voltage dependent polyamine block
Kinetic models that reproduce the voltage and concentration dependence of polyamine block of Kir2.1 channels require at least two different equilibria, generally interpreted to indicate two or more distinct polyamine binding sites (Lopatin et al.,
In kinetic models of spermine binding with multiple (sequential) binding sites, the first blocking step has very weak voltage dependence, with an effective valence typically less than 1, indicating the movement of 1 or less ions through the membrane field ahead of the blocker (Figure 3). Furthermore, interactions between spermine and this shallow binding site are of very low affinity. It is generally agreed that the first shallow blocking step involves interactions between polyamines and numerous residues in the CTD (Section Regulation of polyamine block by residues in the cytoplasmic domain). This shallow binding step can be specifically abolished by mutations of F254 or D255 in the “lower ring” of the CTD of Kir2.1, while mutations in the “upper ring” of acidic charges (Figure 2D) have mixed effects on spermine binding in the TMD and CTD sites, along with effects on ion permeation (Taglialatela et al., 1995; Guo and Lu,
Most of the voltage dependence associated with polyamine block arises from a second binding step, involving the migration of the blocker from the shallow site in the CTD toward the inner cavity region of the TMD. This movement is likely accompanied by displacement of numerous permeant ions (Figure 3) (Pearson and Nichols,
Divergent models of spermine binding in the inner cavity site
The details of polyamine binding in the inner cavity, in the vicinity of the rectification controller residue, has been among the most extensively debated questions in studies of polyamine block of Kir channels. Given the varied approaches taken to solve this problem, it is not surprising that a variety of structural models of polyamine binding have been proposed. We hope to summarize these ideas and offer suggestions for future development of studies on this mechanism.
One extensive set of studies has proposed a polyamine binding site with the leading end of the blocker oriented in the vicinity of the “rectification controller” position, and the trailing end of the blocker located close to residue M183 (Guo and Lu,
Figure 4

Contrasting models of the deep spermine binding site in Kir2.1. (left panel) The “shalllow model” proposes a binding region “below” the rectification controller position, highlighted in yellow, along with residues in this region that have been demonstrated to reduce polyamine blocker affinity. (right panel) The “deep” model proposes a binding site highlighted in cyan, supported by experiments testing the interactions between polyamine block and modification of substituted pore-lining cysteines.
Several other groups, including our own, have suggested a somewhat different orientation of spermine in the inner cavity, largely based on the effects of chemical modification of introduced cysteine residues at pore-lining positions (Figure 4, cyan) (Chang et al.,
Figure 5

Blocker trapping approaches highlight a deep polyamine binding site. This image summarizes the effects of MTS modification of pore-lining cysteines on kinetics of polyamine binding and unbinding, highlighted by two recent studies (Kurata et al.,
A satisfactory physical description of the spermine binding site should describe the physical orientation of spermine within the channel, and account for the steep voltage dependence of spermine block. In either of the above hypotheses describing the deep spermine binding site, two important points are worth considering as studies move forward. Firstly, spermine and other polyamines are very flexible compounds with numerous torsionable bonds that can sample a variety of conformations—there may not be a single defined “site” or orientation of spermine bound in the TMD. In this regard, one criticism of the interpretation of a deep binding site (between the “rectification controller” and selectivity filter, Figure 4, cyan) has been that a fully extended spermine blocker is considerably longer than the distance between these two sites (Shin and Lu, 2005). However, a few modest bond rotations enable spermine to readily occupy this region deep in the channel (Figure 6A) (Kurata et al.,
Figure 6

Does charybdotoxin binding reveal details of amine interactions with the selectivity filter? (A) Depiction of a previously published molecular model of Kir2.1 with a polyamine bound in a deep site in the Kir inner cavity (Kurata et al.,
Channelopathies and physiological roles of polyamine sensitive Kir channels
The following sections are intended to provide some brief physiological context to the biophysical aspects of polyamine block discussed thus far. Early characterization of inward rectifiers primarily involved studies in cardiac and skeletal muscle, and played a prominent role in the evolution of Hodgkin-Huxley models to describe more complex action potentials in tissues like cardiac muscle (Noble,
Cardiac arrhythmias related to Kir2.x channels and polyamine block
Counteracting effects of depolarizing (Ca2+, Na+) and hyperpolarizing (K+) currents are responsible for shaping the “plateau” phase of the cardiac action potential and repolarization to a stable resting membrane potential (Nerbonne and Kass,
Only three mutations have been identified to date in SQT3 patients. The first reported mutation caused charge neutralization of the “rectification controller” residue (D172N), whose functional role was described in Section Regulation of polyamine block by residues in the transmembrane domain (Priori et al.,
The role of Kir2.x channels in action potential repolarization also highlights the possibility for tuning of cardiac function by post-translational modification of these channels. This may sometimes be linked to certain pathological states, as revealed by the recent studies of nitrosylation of Kir2.1 (at residue cysteine 76). This NO dependent post-translational modification upregulates heterologous Kir2.1 currents and endogenous IK1 from isolated myocytes, and is reduced in tissue from patients suffering from chronic atrial fibrillation (Gomez et al.,
Strongly rectifying channels in development of bone and muscle
Significant perturbative developmental effects arise from loss-of-function mutations in the strongly rectifying Kir2.1 channel. These are interesting to consider because they have not yet been linked in an obvious causative way to the moment-to-moment electrical function of these channels. These effects are particularly apparent in the development of bone and muscle. Carriers of loss-of-function Kir2.1 mutations (Andersen-Tawil syndrome) typically exhibit morphological abnormalities including short stature, facial abnormalities, and unusual bone structure in their extremities (Plaster et al.,
Some of the fine details of Kir2.1 regulation in development have been documented in very early stages of muscle differentiation. Specifically, Kir2.1 channels are inhibited by phosphorylation of tyrosine 242 in early stages of muscle development (Wischmeyer et al., 1998; Fischer-Lougheed et al.,
Regulation of Kir channel function by altered polyamine metabolism
Another potential underlying cause of altered Kir channel function is disruption of endogenous polyamine metabolism, which might arise via genetic mutations of polyamine biosynthetic enzymes, or pharmacological inhibition. Pharmacological modulation of endogenous polyamine levels (using ornithine decarboxylase inhibitors) can significantly alter the kinetics and magnitude of current from heterologously expressed Kir2.1 and Kir2.3 channels (Shyng et al., 1996). More importantly, physiological consequences of altered polyamine levels are apparent in animal models and human patients exhibiting defective polyamine metabolism. Numerous defects arise in the “gyro” mouse model (carrying a deletion of an X chromosome region containing the spermine synthase gene, and a second gene involved in phosphate metabolism), including poor physical development, neurological defects, sterility, and shortened lifespan. Remarkably, many of these traits can be rescued by transgenic overexpression of spermine synthase, illustrating the widespread functional importance of appropriate polyamine biosynthesis (Wang et al., 2004). A rare but dramatic correlate in humans is the X-linked disease Snyder-Robinson-Syndrome (SRS), caused by partial or complete loss-of-function of the spermine synthase gene, leading to severe mental retardation, poor muscle development and hypotonia, and bone defects (Cason et al.,
What is left to learn about polyamine block of Kir channels?
Structure-function work based on site directed mutagenesis and electrophysiological studies has led to a concrete description of the amino acids involved in controlling kinetics and affinity of polyamine block. However, numerous unanswered questions linger regarding the specific chemical forces that dictate polyamine block, and the exact nature of interactions between polyamines and acidic amino acid side chains that influence polyamine block. To conclude this review, we have highlighted what we perceive to be pertinent lingering questions related to the mechanism of polyamine block of Kir channels.
What is the pKa of the “rectification controller” and other functionally important pore-lining acidic residues?
Recent studies in nicotinic acetylcholine receptors and other model systems have highlighted the context-dependence of the pKa of glutamate and aspartate side chains (Cymes and Grosman,
Do blocker amines interact with the selectivity filter? if so, how?
This is an interesting question that has been debated significantly in the context of the stable “deep” spermine binding site (Section Divergent models of spermine binding in the inner cavity site), and may be cast in a different light by recent crystal structures of Kv1.2 in complex with charybdotoxin (Banerjee et al.,
Recent structures of charybdotoxin bound to Kv1.2 illustrate that the terminal amine of a critical side chain lysine is coordinated by the external K+ binding site of the Kv1.2 selectivity filter (Figure 6B), and alters the distribution of ions in the filter (Banerjee et al.,
Summary
Polyamine blockade is a well-recognized mechanism able to generate steep voltage-dependence of ion channels in excitable tissues. Mutations that disrupt the function of strongly rectifying channels have pronounced effects on the electrical properties of excitable cells, and on aspects of tissue development and growth. The molecular details of polyamine block have been dissected with conventional structure-function approaches, and we anticipate that application of new approaches and emerging methods will add important details to current models of this process.
Conflict of interest statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Statements
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
inward rectifier, potassium channels, polyamines, voltage-dependent gating, ion channel block, channelopathy
Citation
Baronas VA and Kurata HT (2014) Inward rectifiers and their regulation by endogenous polyamines. Front. Physiol. 5:325. doi: 10.3389/fphys.2014.00325
Received
15 March 2014
Accepted
06 August 2014
Published
27 August 2014
Volume
5 - 2014
Edited by
Nazzareno D'Avanzo, Université de Montréal, Canada
Reviewed by
Anatoli Lopatin, University of Michigan, USA; Henry Sackin, Rosalind Franklin University, USA
Copyright
© 2014 Baronas and Kurata.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Harley T. Kurata, Department of Anesthesiology, Pharmacology, and Therapeutics, University of British Columbia, 2176 Health Sciences Mall, Room 218, Vancouver, BC V6T 1Z3, Canada e-mail: harley.kurata@ubc.ca
This article was submitted to Membrane Physiology and Membrane Biophysics, a section of the journal Frontiers in Physiology.
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