<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" "journalpublishing.dtd">
<article article-type="research-article" dtd-version="2.3" xml:lang="EN" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Physiol.</journal-id>
<journal-title>Frontiers in Physiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Physiol.</abbrev-journal-title>
<issn pub-type="epub">1664-042X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1263475</article-id>
<article-id pub-id-type="doi">10.3389/fphys.2024.1263475</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Physiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Insights into the differences related to the resistance mechanisms to the highly toxic fruit <italic>Hippomane mancinella</italic> (Malpighiales: Euphorbiaceae) between the larvae of the sister species <italic>Anastrepha acris</italic> and <italic>Anastrepha ludens</italic> (Diptera: Tephritidae) through comparative transcriptomics</article-title>
<alt-title alt-title-type="left-running-head">Garc&#xed;a-Salda&#xf1;a et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fphys.2024.1263475">10.3389/fphys.2024.1263475</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Garc&#xed;a-Salda&#xf1;a</surname>
<given-names>Essicka A.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Cerqueda-Garc&#xed;a</surname>
<given-names>Daniel</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/518708/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/data-curation/"/>
<role content-type="https://credit.niso.org/contributor-roles/formal-analysis/"/>
<role content-type="https://credit.niso.org/contributor-roles/software/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/visualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ibarra-Laclette</surname>
<given-names>Enrique</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/231939/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Aluja</surname>
<given-names>Mart&#xed;n</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1281716/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
<role content-type="https://credit.niso.org/contributor-roles/funding-acquisition/"/>
<role content-type="https://credit.niso.org/contributor-roles/methodology/"/>
<role content-type="https://credit.niso.org/contributor-roles/supervision/"/>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Cl&#xfa;ster Cient&#xed;fico y Tecnol&#xf3;gico BioMimic<sup>&#xae;</sup>
</institution>, <institution>Red de Manejo Biorracional de Plagas y Vectores</institution>, <institution>Instituto de Ecolog&#xed;a</institution>, <institution>A C&#x2013;INECOL</institution>, <addr-line>Xalapa</addr-line>, <addr-line>Veracruz</addr-line>, <country>Mexico</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Cl&#xfa;ster Cient&#xed;fico y Tecnol&#xf3;gico BioMimic<sup>&#xae;</sup>
</institution>, <institution>Red de Estudios Moleculares Avanzados</institution>, <institution>Instituto de Ecolog&#xed;a</institution>, <institution>A C&#x2013;INECOL</institution>, <addr-line>Xalapa</addr-line>, <addr-line>Veracruz</addr-line>, <country>Mexico</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/594252/overview">Bimalendu B. Nath</ext-link>, Savitribai Phule Pune University, India</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/441410/overview">Pawel Marciniak</ext-link>, Adam Mickiewicz University, Poland</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2139207/overview">Rita Mukhopadhyaya</ext-link>, Indian Women Scientists Association, India</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Mart&#xed;n Aluja, <email>martin.aluja@inecol.mx</email>; Daniel Cerqueda-Garc&#xed;a, <email>daniel.cerqueda@inecol.mx</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>18</day>
<month>01</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>15</volume>
<elocation-id>1263475</elocation-id>
<history>
<date date-type="received">
<day>19</day>
<month>07</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>08</day>
<month>01</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Garc&#xed;a-Salda&#xf1;a, Cerqueda-Garc&#xed;a, Ibarra-Laclette and Aluja.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Garc&#xed;a-Salda&#xf1;a, Cerqueda-Garc&#xed;a, Ibarra-Laclette and Aluja</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The Manchineel, <italic>Hippomane mancinella</italic> (&#x201c;Death Apple Tree&#x201d;) is one of the most toxic fruits worldwide and nevertheless is the host plant of the monophagous fruit fly species <italic>Anastrepha acris</italic> (Diptera: Tephritidae). Here we aimed at elucidating the detoxification mechanisms in larvae of <italic>A. acris</italic> reared on a diet enriched with the toxic fruit (6% lyophilizate) through comparative transcriptomics. We compared the performance of <italic>A. acris</italic> larvae with that of the sister <italic>species A. ludens,</italic> a highly polyphagous pest species that is unable to infest <italic>H. mancinella</italic> in nature. The transcriptional alterations in <italic>A. ludens</italic> were significantly greater than in <italic>A. acris</italic>. We mainly found two resistance mechanisms in both species: structural, activating cuticle protein biosynthesis (chitin-binding proteins likely reducing permeability to toxic compounds in the intestine), and metabolic, triggering biosynthesis of serine proteases and xenobiotic metabolism activation by glutathione-S-transferases and cytochrome P450 oxidoreductase. Some cuticle proteins and serine proteases were not orthologous between both species, suggesting that in <italic>A. acris</italic>, a structural resistance mechanism has been selected allowing specialization to the highly toxic host plant. Our results represent a nice example of how two phylogenetically close species diverged over recent evolutionary time related to resistance mechanisms to plant secondary metabolites.</p>
</abstract>
<kwd-group>
<kwd>Herbivory</kwd>
<kwd>detoxification mechanisms</kwd>
<kwd>transcriptomics</kwd>
<kwd>
<italic>Anastrepha acris</italic>
</kwd>
<kwd>
<italic>Anastrepha ludens</italic>
</kwd>
<kwd>Diptera: Tephritidae</kwd>
<kwd>
<italic>Hippomane mancinella</italic>
</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Invertebrate Physiology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Insects are the most diverse group of animals on earth with over a million documented species, many being essential for ecosystem functionality (<xref ref-type="bibr" rid="B45">Grimaldi and Engel, 2005</xref>). Their ecological significance spans from nutrient cycling and plant pollination to serving as food sources for many taxa (<xref ref-type="bibr" rid="B92">Scudder, 2017</xref>). Moreover, certain insect species have profound economic impacts given their pest status and the interactions that ensue when completing their life cycles in commercially valuable plants/fruits (<xref ref-type="bibr" rid="B59">Lemelin et al., 2016</xref>). One such interaction is the resistance/tolerance to the toxic compounds found in certain fruits, which partially protect plants from herbivores (<xref ref-type="bibr" rid="B104">Weng et al., 2012</xref>). Understanding the resistance mechanisms to these toxic compounds can provide insights into insects&#x27; evolutionary adaptations and survival strategies, especially when considering closely related species (<xref ref-type="bibr" rid="B10">Aluja and Mangan, 2008</xref>; <xref ref-type="bibr" rid="B8">Ali and Agrawal, 2012</xref>; <xref ref-type="bibr" rid="B43">Giron et al., 2018</xref>).</p>
<p>A particularly important group of insects is represented by the true fruit flies (Diptera: Tephritidae) which includes more than 5,000 species (<xref ref-type="bibr" rid="B75">Norrbom, 2010</xref>; <xref ref-type="bibr" rid="B63">Liquido et al., 2019</xref>). As part of their life history, fruit fly females lay their eggs inside their host&#x2019;s pulp or seeds, where they find favorable conditions for the growth and development of their larvae (<xref ref-type="bibr" rid="B10">Aluja and Mangan, 2008</xref>). This behavior causes certain fruit fly species to affect a wide range of commercially valuable fruit crops, limiting international trade of agricultural products (<xref ref-type="bibr" rid="B10">Aluja and Mangan, 2008</xref>). In fact, some of these fruit flies are listed among the fruit-tree pest insect species with the greatest economic impact worldwide (<xref ref-type="bibr" rid="B105">White and Elson-Harris, 1992</xref>). Among these species, those belonging to the <italic>Anastrepha</italic> genus are one of the most relevant in Mexico and the Neotropics (<xref ref-type="bibr" rid="B49">Hern&#xe1;ndez-Ortiz et al., 2010</xref>). Such is the case of <italic>Anastrepha ludens</italic> (Loew) (Diptera: Tephritidae), commonly known as the Mexican Fruit Fly.</p>
<p>
<italic>Anastrepha ludens</italic> is classified as a highly polyphagous pest, due to its feeding habits which confer it the ability to attack many plant species of several families, including many economically important fruit species such as mango (<italic>Mangifera indica</italic> L.; Anacardiaceae), citrus (<italic>Citrus aurantium</italic> L. or <italic>Citrus x sinensis</italic> L.; Rutaceae), peach (<italic>Prunus persica</italic> L.; Rosaceae), and pepper (<italic>Capsicum pubescens</italic> Ruiz y Pav.; Solanaceae) (<xref ref-type="bibr" rid="B24">Birke et al., 2015</xref>; <xref ref-type="bibr" rid="B25">Birke and Aluja, 2018</xref>); or wild fruit species, including <italic>Casimiroa edulis</italic> La Llave and Lex (also known as white sapote or matasano) and <italic>C. greggii</italic> (S. Watson) F. Chiang (commonly known as yellow chapote), both within the Rutaceae family. These last two species are the purported ancestral hosts of <italic>A. ludens</italic> (<xref ref-type="bibr" rid="B24">Birke et al., 2015</xref>).</p>
<p>In contrast to highly polyphagous tephritid species (<italic>i.e.</italic>, <italic>A. ludens</italic>, the Oriental fruit fly - <italic>Bactrocera dorsalis</italic> Hendel, or the Mediterranean fruit fly - <italic>Ceratitis capitata</italic> Wiedemann), there are other fruit fly species with strict monophagous feeding habits. A good example of a monophagous fruit fly is represented by <italic>B. oleae</italic> Gmelin, commonly known as the Olive Fly. This fly specializes in infesting the fruit of <italic>Olea europaeae</italic> L (olive tree), which contains high levels of phenolic compounds (up to 14% dry weight-based), many of them being active against insects (<xref ref-type="bibr" rid="B22">Ben-Yosef et al., 2015</xref>). Among these compounds, Oleuropein, a glucid that is lethal to <italic>Bactrocera oleae</italic> larvae, stands out. Despite this, the larvae of <italic>B. oleae</italic> can develop optimally in the fruit of the olive tree, because it hosts the bacterium <italic>Candidatus Erwinia dacicola</italic> (Enterobacteriaceae), a symbiont found in its digestive tract that assists the larvae to catabolize oleuropein (<xref ref-type="bibr" rid="B22">Ben-Yosef et al., 2015</xref>). A similar association between a key bacterium degrading toxic polyphenols (<italic>i.e.</italic>, <italic>Komagataeibacter</italic>) and a fruit fly (the stenophagous <italic>A</italic>. <italic>striata</italic>) was recently reported (<xref ref-type="bibr" rid="B76">Ochoa-S&#xe1;nchez et al., 2022</xref>). Here we chose as study model another fruit fly species adapted to monophagy: <italic>Anastrepha acris</italic> Stone (Diptera: Tephritidae), which is phylogenetically very close to <italic>A. ludens</italic> (<xref ref-type="bibr" rid="B73">Mengual et al., 2017</xref>), but exclusively infests fruits of <italic>Hippomane mancinella</italic> L (Malpighiales: Euphorbiaceae) (<xref ref-type="bibr" rid="B11">Aluja and Norrbom, 2000</xref>; <xref ref-type="bibr" rid="B12">Aluja et al., 2020</xref>). <italic>Hippomane mancinella</italic> is a tree that produces a fruit commonly known as &#x201c;Apple of Death", which is highly toxic to many animals, including humans and insects (<xref ref-type="bibr" rid="B85">Rao, 1974</xref>; <xref ref-type="bibr" rid="B5">Adolf and Hecker, 1984</xref>).</p>
<p>Recently, <xref ref-type="bibr" rid="B12">Aluja et al. (2020)</xref> analyzed the interaction between <italic>H. mancinella, A. acris,</italic> and <italic>A. ludens</italic>, and found that diets enriched with different concentrations of dried fruit pulp of <italic>H. mancinella</italic> have a differential effect on the development of the larvae of both species. Not surprisingly, in <italic>A. ludens</italic> they found that <italic>H. mancinella</italic> produces a more pronounced, negative impact on larvae development as there is no natural association between the fly and this toxic fruit in nature. For example, only 0.08% of <italic>A. ludens</italic> larvae developed into pupae in a diet supplemented with 12.5% <italic>H. mancinella</italic> compared with <italic>A. acris</italic> larvae, which fully metamorphosed into pupae and viable adults. However, the number and weight of the exposed pupae decreased as concentration increased. This study nicely complemented the classical literature on the topic of specialized insects dealing with toxic plants (<italic>e.g.</italic>, <xref ref-type="bibr" rid="B23">Berenbaum et al., 1989</xref>; <xref ref-type="bibr" rid="B4">Adler et al., 1995</xref>; <xref ref-type="bibr" rid="B109">Zalucki et al., 2001</xref>; <xref ref-type="bibr" rid="B7">Agrawal and Kurashige, 2003</xref>; <xref ref-type="bibr" rid="B46">Harvey et al., 2007</xref>). It becomes clear that monophagous species (<italic>i.e.</italic>, highly specialized ones) are not totally immune to plant defense, but they have developed physiological adaptations which allow individuals to cope with deleterious allelochemicals contained in their hosts, exhibiting greater tolerance to these chemicals than polyphagous species. The active compounds reported in <italic>H. mancinella</italic> include the ellagitannins Hippomanin A and B, phenylpropanoids, coumarins, and flavonoids (<italic>e.g.</italic>, naringenin, kaempferol, hesperidin, and quercetin) (<xref ref-type="bibr" rid="B85">Rao, 1974</xref>; <xref ref-type="bibr" rid="B12">Aluja et al., 2020</xref>). Hippomanin A (a hydrolyzable tannin) is the main active, toxic compound of <italic>H. mancinella</italic> fruit. When it undergoes acid hydrolysis, it yields glucose, ellagic acid, and gallic acid (<xref ref-type="bibr" rid="B85">Rao, 1974</xref>; <xref ref-type="bibr" rid="B86">Rao, 1977</xref>). However, Hippomanin A was not detected in any of the developmental stages of <italic>A. acris</italic> and neither in its parasitoid; <italic>Doryctobracon areolatus</italic> (Sz&#x00E9;pligeti) (Hymenoptera: <italic>Braconidae</italic>), which suggests that <italic>A. acris</italic> developed detoxification mechanisms to metabolize it (<xref ref-type="bibr" rid="B12">Aluja et al., 2020</xref>).</p>
<p>Despite their economic importance, there is still scant work aimed at understanding the mechanisms used by fruit flies to defend themselves from the toxic specialized metabolites of their plant hosts. In this sense, gene expression studies can be helpful in our quest to elucidate the metabolic impact of plant compounds on herbivorous insects and their effects on their feeding behavior and development (<xref ref-type="bibr" rid="B99">Thitz et al., 2020</xref>). For example, <xref ref-type="bibr" rid="B102">Wang et al. (2020)</xref> and <xref ref-type="bibr" rid="B110">Zhao et al. (2022)</xref> tested the reaction of <italic>Spodoptera litura</italic> (Fabricius) (Lepidoptera: Noctuidae) fed on a diet enriched with tannins. They found that the genes encoding for proteins involved in xenobiotic metabolism (<italic>e.g.</italic>, cytochrome, and glutathione-related proteins) and digestive enzymes (<italic>e.g.,</italic> lipases and carbohydrases), were highly regulated in the midgut upon diet intake. In <italic>Helicoverpa armigera</italic> (H&#xfc;bner) (Lepidoptera: Noctuidae) moth, <xref ref-type="bibr" rid="B111">Zheng et al. (2022)</xref> evaluated the transcriptomic changes in response to gossypol and tannic acid and identified several transcript-encoding-enzymes involved in immunity, digestion, and detoxification metabolism, including glutathione S-transferases (GSTs), UDP-glucosyl-transferases (UGTs), hydrolases, serine-proteases, lipases, Hsp20, or aldehyde dehydrogenases, explaining how tannins are degraded within the digestive tract of the insect (<xref ref-type="bibr" rid="B111">Zheng et al., 2022</xref>). <xref ref-type="bibr" rid="B31">Celorio-Mancera et al. (2011)</xref> evaluated the defensive mechanisms of the generalist insect <italic>H. armigera</italic> against the toxic compounds produced by plants within the genus <italic>Gossypium</italic> L (Malvales: Malvaceae). These authors determined that some phytoregulators (<italic>i.e.</italic>, jasmonic acid, salicylic acid, and ethylene) and phenolic compounds modified the transcriptional responses of the larvae at the primary metabolism level and activated its stress response (<xref ref-type="bibr" rid="B31">Celorio-Mancera et al., 2011</xref>).</p>
<p>Based on all the above, but particularly following the emphatic call by <xref ref-type="bibr" rid="B8">Ali and Agrawal (2012)</xref> recommending the study of related insects with contrasting feeding habits to foster a deeper understanding of the many mechanisms behind herbivory, here we applied a comparative transcriptomic approach to identify the response of <italic>A. acris</italic> and <italic>A. ludens</italic> larvae when fed a lyophilized extract of <italic>H</italic>. <italic>mancinella.</italic> The latter, to gain insight into the resistance and detoxification mechanisms used by these sister species to overcome the effects of toxic phytochemicals. Based on the &#x201c;phytochemical coevolution theory/hypothesis&#x201d; (<xref ref-type="bibr" rid="B35">Cornell and Hawkins, 2003</xref>), we predicted that albeit their close phylogenetic relationship, <italic>A</italic>. <italic>acris</italic>, the strict specialist, would have evolved resistance/degrading mechanisms that the congener, the broad generalist, either lost or never developed during evolution.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>2 Materials and methods</title>
<sec id="s2-1">
<title>2.1 Biological material</title>
<p>To obtain wild specimens of <italic>A. acris</italic> and <italic>A. ludens</italic>, we made collections of infested host fruit in nature. For this, we collected a total of 65&#xa0;kg of <italic>H. mancinella</italic> (host of <italic>A. acris</italic>) and 60&#xa0;kg of <italic>Citrus x aurantium</italic> (bitter orange; host of <italic>A. ludens</italic>). The first were collected at Punta Mita (20&#xb0; 46&#x2032;19.58&#x201c;N, 105&#xb0; 30&#x2032;38.79&#x2033;W) and Lo de Marcos (20&#xb0; 57&#x2032;13.28&#x201c;N, 105&#xb0; 21&#x2032;59.09&#x2033;W) in the state of Nayarit, Mexico during July 2020. Infested <italic>C. x aurantium</italic> fruits were collected in September 2020, in Alborada, Veracruz, Mexico (19&#xb0; 26&#x2032;49.8&#x201c;N, 96&#xb0; 52&#x2032;24.5&#x2033;W). The criteria used to determine infestation status in fruit was the identification of small holes in the fruit skin or brown spots (indicating fruit decomposition), both of which are signs of oviposition and larval feeding activity inside the fruit. In addition, 15&#xa0;kg of uninfested <italic>H. mancinella</italic> fruit were also collected and frozen in liquid nitrogen in the field. These samples were used to lyophilize the pulp used for the experimental diets, following the protocol described by <xref ref-type="bibr" rid="B12">Aluja et al. (2020)</xref>.</p>
<p>The field-collected material was processed in the laboratories of the Biorational Pest and Vector Management Network (RMBPV), embedded in the BioMimic<sup>&#xae;</sup> Scientific and Technological Cluster, Instituto de Ecolog&#xed;a, A.C. (INECOL) in Coatepec, Veracruz, Mexico. Methods described in <xref ref-type="bibr" rid="B12">Aluja et al. (2020)</xref> were followed to process infested fruit and collect the larvae/pupae yielded by the fruit.</p>
</sec>
<sec id="s2-2">
<title>2.2 Egg collection</title>
<p>Adult and sexually mature flies of each species were distributed in 15 30 &#xd7; 30 &#xd7; 30&#xa0;cm transparent acrylic cages, at a density of 30 &#x2640; and 15 &#x2642;&#xb4;s (a total of 450 &#x2640; and 225 &#x2642;). Inside each cage, we placed containers maintained with water, food (<italic>i</italic>.<italic>e</italic>., hydrolyzed protein and sugar in a 1: 3 w/w ratio), with a photoperiod of 12:12&#xa0;h&#xa0;L:D, at 27&#xb0;C &#xb1; 1&#xb0;C and 70% &#xb1; 5% of relative humidity (RH). For the egg collection, a green cloth, balloon-shaped oviposition device was introduced into each cage, filled with a 0.2% sodium benzoate solution as conservative (<xref ref-type="bibr" rid="B78">Pascacio-Villaf&#xe1;n et al., 2018</xref>). The devices placed in the <italic>A. acris</italic> cages were impregnated with a mixture of sterile water and 50% of the volume with lyophilized pulp of <italic>H. mancinella</italic> because preliminary observations showed that females do not oviposit in <italic>H. mancinella</italic>-free mixtures. Devices used for <italic>A. ludens</italic> oviposition were free of the <italic>H. mancinella</italic> lyophilizate. Oviposition devices (<italic>i.e.,</italic> egg-collection devices) were retrieved every day after exposing them to flies for 24&#xa0;h, until the flies stopped producing offspring/eggs (<italic>i.e.</italic>, approximately two and a half months for both species). The eggs were placed on the top of a black cloth placed over moistened cotton, with 5&#xa0;mL of 0.2% sodium benzoate in plastic Petri dishes (6&#xa0;cm in diameter) and were incubated in the dark at 29&#xb0;C &#xb1; 1&#xb0;C and 70% &#xb1; 5% RH. The eggs hatched after ca. Three days and the larvae were transferred to Petri dishes (6&#xa0;cm in diameter) containing the experimental diets described below.</p>
</sec>
<sec id="s2-3">
<title>2.3 Transcriptomic experiment</title>
<p>To compare the gene expression of <italic>A. acris</italic> and <italic>A. ludens</italic> larvae in response to lyophilized pulp of <italic>H. mancinella</italic>, we mixed 6% of the lyophilizate with an artificial diet. The artificial diet consisted of a mixture of guar gum (0.096%), nipagin (methylparaben, 0.096%), sodium benzoate (0.38%), citric acid (0.42%), corn flour (5.1%), yeast (5.78%), sugar (7.9%), cob powder (18.3%) and distilled water (61.88%) (as described in <xref ref-type="bibr" rid="B12">Aluja et al., 2020</xref>). We determined the concentration used in this study based on a previous one (<xref ref-type="bibr" rid="B12">Aluja et al., 2020</xref>), where we reported that <italic>A. acris</italic> larvae can survive until the pupal stage with negligible negative effect up to a concentration of &#x223c;30% of <italic>H</italic>. <italic>mancinella</italic> pulp mixed with an artificial diet, but <italic>A. ludens</italic> larvae reached their survival limit when exposed to a proportion of 12.5% of pulp in the artificial diet (&#x3e;99% of the larvae died). Therefore, here we used the sub-lethal dose of 6% of lyophilized pulp as the experimental treatment to be able to compare both species.</p>
<p>In the case of the control treatment, larvae were fed with the same artificial diet but without the addition of the toxic <italic>H. mancinella</italic> lyophilizate. This control setup was crucial in establishing baseline gene expression levels in both species under standard dietary conditions. Fifty newly eclosed larvae of each fly species were placed in a 60&#xa0;mm diameter Petri dish, with 16&#xa0;g of diet (artificial diet with 6% or without <italic>H. mancinella</italic> lyophilizate). These larvae were kept at 29&#xb0;C &#xb1; 1&#xb0;C, 70% &#xb1; 5% of RH, and were fed for 10 days, until the third instar. Three larvae were taken from each Petri dish and preserved in five volumes of RNAlater<sup>&#xae;</sup> (Qiagen), then they were frozen in liquid nitrogen and kept at &#x2212;80&#xb0;C (<xref ref-type="bibr" rid="B77">Oppert et al., 2012</xref>).</p>
<p>Formal transcriptomic analyses considered three larvae &#xd7; three replicates &#xd7; two conditions &#x3d; 18 larvae per species (36 larvae in total). Each replicate consisted of a pool of three larvae. Replicates were collected during identical but independent and randomized experimental runs, with independent observations, but with strictly controlled environmental conditions. RNA extractions were made with the RNeasy<sup>&#xae;</sup> Plant mini-Kit (Qiagen<sup>&#xa9;</sup>; Hilden, Germany). Total RNA concentration was quantified in a NanoDrop<sup>&#xae;</sup> spectrophotometer (ND-1000, NanoDrop Technologies; Wilmington, DE, United States), while its integrity was verified on 1% agarose gel.</p>
<p>Prior to sequencing, the RIN (RNA integrity number) of each sample was estimated using the Agilent 2,100 Bioanalyzer<sup>&#xae;</sup> capillary electrophoresis system (Agilent Technologies<sup>&#xa9;</sup>; Palo Alto, CA, United States). Only samples with a RIN &#x3e;8 were considered for sequencing. The construction of the libraries was achieved with the TruSeq<sup>&#xae;</sup> RNA Sample Preparation v2 kit (Illumina<sup>&#xae;</sup>; San Diego, CA). Each library was normalized to a final concentration of 20&#xa0;mM and was sequenced on NextSeq500<sup>&#xae;</sup> equipment (Illumina<sup>&#xa9;</sup>; San Diego, CA), using a paired 2 &#xd7; 150&#xa0;bp format, at the sequencing unit of the Instituto de Ecolog&#xed;a, A.C. (INECOL).</p>
</sec>
<sec id="s2-4">
<title>2.4 Bioinformatic analysis</title>
<p>The analysis workflow to process the Illumina paired-end (2 &#xd7; 150) raw reads was performed in the High-Performance Cluster at the Instituto de Ecolog&#xed;a A.C. (INECOL; Xalapa Veracruz, Mexico). A <italic>de novo</italic> transcriptome assembly was performed for each species. For each library, the Illumina adapters were removed, the first 10&#xa0;bp of the raw reads were trimmed, and the low-quality sequences were cleaned, considering a minimum QScore quality value of 20, using the Trim galore v0.4.5 (<xref ref-type="bibr" rid="B55">Krueger, 2012</xref>) and Cutadapt v1.9.1 (<xref ref-type="bibr" rid="B70">Martin, 2011</xref>) software. The sequencing quality of each dataset was checked using the FastQC program (<ext-link ext-link-type="uri" xlink:href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc">http://www.bioinformatics.babraham.ac.uk/projects/fastqc</ext-link>). A single <italic>de novo</italic> transcriptome assembly was generated for each species using the Trinity software with default parameters (<xref ref-type="bibr" rid="B44">Grabherr et al., 2011</xref>). After the assembly, we obtained the unigenes or transcripts which were processed with the SeqClean program to remove the poly A tails (<ext-link ext-link-type="uri" xlink:href="https://sourceforge.net/projects/seqclean">https://sourceforge.net/projects/seqclean</ext-link>). To reduce redundant sequences and errors generated by insertions or deletions in the transcriptomes of each species, the coding regions of the unigenes were identified and the reading frames were corrected with the AlignWise software, taking as reference an insect&#x2019;s genomes database (<xref ref-type="bibr" rid="B38">Evans and Loose, 2015</xref>). To reduce redundancy, unigenes were clustered at 95% similarity with the CD-HIT program (<xref ref-type="bibr" rid="B60">Li and Godzik, 2006</xref>). To estimate the transcripts&#x2019; abundance, the raw libraries were mapped with the Salmon software against the transcriptome assembly of their respective species (<xref ref-type="bibr" rid="B81">Patro et al., 2017</xref>). The differentially expressed unigenes (DEGs) were calculated with DEseq2 software (<xref ref-type="bibr" rid="B64">Love et al., 2014</xref>) in the R Studio 4.1.0 under R (<xref ref-type="bibr" rid="B87">R Development Core Team, 2021</xref>). We focused on contrasting the gene expression between control and treatment groups to identify Differentially Expressed Genes (DEGs). Initially, we filtered out transcripts exhibiting less than 10 transcripts per million (tpm). Subsequently, for the identification of DEGs, we applied a threshold criterion were unigenes exhibiting a fold change (FC) of &#x2265;1 or &#x2264; &#x2212;1, coupled with an adjusted <italic>p</italic>-value (<italic>p</italic>-adj, corrected for False Discovery Rate, FDR) of less than 0.05, were considered significant. This approach allowed us to robustly determine genes that were significantly upregulated or downregulated in the treatment group compared to the control. To explore the results, the up and downregulated set of DEGs per experiment were visualized as volcano plots, Pearson&#xb4;s correlations, PCAs, heatmaps, and pie charts, with the R Studio 4.1.0 software (<xref ref-type="bibr" rid="B87">R Development Core Team, 2021</xref>), using the ggrepel (<xref ref-type="bibr" rid="B95">Slowikowski, 2021</xref>), EnhancedVolcano (<xref ref-type="bibr" rid="B26">Blighe et al., 2021</xref>), magrittr (<xref ref-type="bibr" rid="B74">Milton-Bache and Wickham, 2020</xref>), corrplot (<xref ref-type="bibr" rid="B103">Wei and Simko, 2021</xref>), pcaExplorer (<xref ref-type="bibr" rid="B68">Marini and Binder, 2019</xref>), cluster (<xref ref-type="bibr" rid="B66">Maechler et al., 2021</xref>), pheatmap (<xref ref-type="bibr" rid="B54">Kolde, 2019</xref>), dplyr (<xref ref-type="bibr" rid="B107">Wickham et al., 2021</xref>), ggplot2 (<xref ref-type="bibr" rid="B106">Wickham, 2016</xref>) and ggpubr (<xref ref-type="bibr" rid="B53">Kassambara, 2020</xref>) packages. Then, the protein IDs and the amino acid sequences were obtained from the sets of DEGs, to obtain the functional annotation. The functional annotation assignments were performed using the eggNOG-mapper website (<xref ref-type="bibr" rid="B30">Cantalapiedra et al., 2021</xref>), specifying a minimum hit e-value &#x3d; 0, minimum hit bit-score &#x3d; 60, Percentage identity &#x3d; 40, minimum % of query coverage &#x3d; 40, minimum % of subject coverage &#x3d; 40, only transferring annotations from one-to-one orthology, with experimental evidence only and realigning queries to the whole PFAM DB. The Pathway-tool 13.0 software (<xref ref-type="bibr" rid="B52">Karp et al., 2010</xref>) was used to perform the metabolic reconstruction. For this, we used the gff3 annotation file obtained from eggNOG. The reconstruction was done with the PathoLogic algorithm, using the taxonomic pruning option to avoid false positives or pathways not present in tephritids, with a pathway prediction score cutoff of 0.15. Those reconstructed pathways associated with differential genes were identified and their log<sub>2</sub> (FC) was plotted as a heatmap.</p>
<p>We used the heuristic tool Proteinortho (<xref ref-type="bibr" rid="B57">Lechner et al., 2011</xref>) to detect orthology between coding proteins of <italic>A. ludens</italic> and <italic>A. acris</italic>. Input data were the aminoacid sequences codified by the corrected ORFs by AlignWise (<xref ref-type="bibr" rid="B38">Evans and Loose, 2015</xref>). We used &#x201c;Proteinortho parameters&#x201d; as default (<xref ref-type="bibr" rid="B57">Lechner et al., 2011</xref>).</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>3 Results</title>
<sec id="s3-1">
<title>3.1 <italic>De novo</italic> transcriptome assembly</title>
<p>The minimum and maximum number of raw reads obtained in the libraries of <italic>A. acris</italic> was 21,886,356 and 27,284,901 (with a mean of 24,776,710.3 and a standard deviation 1,983,057.6), and for <italic>A. ludens</italic> was 22,962,425 and 26,517,707 (with a mean of 24,936,771.2 and standard deviation 1,455,172.4). After trimming the mean number of reads was 24,727,965.8 (standard deviation 1,984,655.3) for <italic>A. acris</italic> and 24,896,660.5 (standard deviation 1,451,546.2) for <italic>A. ludens</italic>. The statistics of the transcriptomes of both species are shown in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>General statistics of the <italic>de-novo</italic> transcriptome assembly of <italic>A. acris</italic> and <italic>A. ludens</italic>.</p>
</caption>
<table>
<thead>
<tr>
<th align="center">Parameters</th>
<th align="center">
<italic>A. acris</italic>
</th>
<th align="center">
<italic>A. ludens</italic>
</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">Total of unigenes (&#x201c;genes&#x201d;)</td>
<td align="center">112,572</td>
<td align="center">141,660</td>
</tr>
<tr>
<td align="center">Total of transcripts (&#x201c;contigs or transcripts&#x201d;)</td>
<td align="center">187,958</td>
<td align="center">232,187</td>
</tr>
<tr>
<td align="center">Percent GC</td>
<td align="center">39.21%</td>
<td align="center">39.12%</td>
</tr>
<tr>
<td align="center">Transcripts/contigs with N50 (bp)</td>
<td align="center">1834</td>
<td align="center">1,491</td>
</tr>
<tr>
<td align="center">Median contig length (bp)</td>
<td align="center">403</td>
<td align="center">379</td>
</tr>
<tr>
<td align="center">Median unigene length (bp)</td>
<td align="center">344</td>
<td align="center">322</td>
</tr>
<tr>
<td align="center">Mean contig length (bp)</td>
<td align="center">886.53</td>
<td align="center">787.92</td>
</tr>
<tr>
<td align="center">Mean unigene length (bp)</td>
<td align="center">653.02</td>
<td align="center">591.52</td>
</tr>
<tr>
<td align="center">Total assembled bases of contigs</td>
<td align="center">166,629,799</td>
<td align="center">182,945,902</td>
</tr>
<tr>
<td align="center">Total assembled bases of unigenes</td>
<td align="center">73,511,905</td>
<td align="center">83,794,024</td>
</tr>
<tr>
<td align="center">Unigenes &#x3e;10 tpm</td>
<td align="center">29,592</td>
<td align="center">32,216</td>
</tr>
<tr>
<td align="center">DEGs downregulated</td>
<td align="center">31</td>
<td align="center">64</td>
</tr>
<tr>
<td align="center">DEGs upregulated</td>
<td align="center">22</td>
<td align="center">184</td>
</tr>
<tr>
<td align="center">Percentage of DEGs downregulated with annotation</td>
<td align="center">87.1%</td>
<td align="center">93.7%</td>
</tr>
<tr>
<td align="center">Percentage of DEGs upregulated with annotation</td>
<td align="center">97.4%</td>
<td align="center">80.4%</td>
</tr>
<tr>
<td align="center">DEGs downregulated with COG</td>
<td align="center">25</td>
<td align="center">60</td>
</tr>
<tr>
<td align="center">DEGs upregulated with COG</td>
<td align="center">21</td>
<td align="center">147</td>
</tr>
<tr>
<td align="center">DEGs downregulated with Pfam</td>
<td align="center">23</td>
<td align="center">58</td>
</tr>
<tr>
<td align="center">DEGs upregulated with Pfam</td>
<td align="center">10</td>
<td align="center">146</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3-2">
<title>3.2 Transcriptome overview of DGEs found in <italic>A. acris</italic> and <italic>A. ludens</italic>
</title>
<p>In the PCA analysis, libraries generated from both <italic>A. acris</italic> and <italic>A. ludens</italic> were clustered according to the treatments (highlighted in circles). Respectively, 33% and 60% of the observed variance were explained by the first of two components. While the separation between the variables was evident (<xref ref-type="fig" rid="F1">Figures 1A, B</xref>), no replicates were detected as outliers (<xref ref-type="fig" rid="F1">Figures 1C, D</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Exploratory plots of the transcriptomic differences between the species <italic>A. acris</italic> and <italic>A. ludens</italic> and between treatments. <bold>(A)</bold> and <bold>(B)</bold> Pearson&#x2019;s correlation analysis of the DEGs between the replicas. All replicas had correlation values &#x3e;0.8. <bold>(C)</bold> and <bold>(D)</bold> Principal component analysis (PCA) of the DEGs from both species. Each point represents a biological replica. The values in the <italic>y</italic> and <italic>x</italic>-axes represent the variation percentages explained by their respective main components.</p>
</caption>
<graphic xlink:href="fphys-15-1263475-g001.tif"/>
</fig>
<p>Comparing the transcripts expressed by the larvae developed in the diet enriched with <italic>H. mancinella</italic> lyophilizates, we found a greater number of deregulated unigenes in <italic>A. ludens</italic>, compared to <italic>A. acris</italic>: 64 unigenes were repressed (downregulated) and 184 were overexpressed (upregulated) (with a log&#x2082; Fold change &#x2265; and &#x2264;1) (<xref ref-type="fig" rid="F2">Figures 2A, B</xref>). Much fewer transcripts were altered in <italic>A. acris</italic>: 31 were repressed and 22 overexpressed (<xref ref-type="fig" rid="F2">Figures 2A, B</xref>). We observed a clear separation between up and downregulated unigenes in the heatmaps in both species that developed in a <italic>H. mancinella</italic> enriched diet. Importantly, the three replicates of each species indicate reproducibility (<xref ref-type="fig" rid="F3">Figure 3</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Volcano plots of DEGs found in <bold>(A)</bold> <italic>A. acris</italic> and <bold>(B)</bold> <italic>A. ludens</italic> in response to 6% <italic>H. mancinella</italic> lyophilizates mixed in an artificial rearing medium. The dotted horizontal line indicates the&#x2013;log Padj &#x3d; 0.05 and the dotted vertical lines indicate the log&#x2082; Fold change &#x2265;1 and &#x2264; &#x2212;1. The statistically significant DEGs are colored points (reds and blues). On the left side those that were repressed &#x201c;downregulated&#x201d; (pink and light blue) and on the right the overexpressed unigenes &#x201c;upregulated&#x201d; (cherry and navy blue) are highlighted. Non-DEGs are shown in gray.</p>
</caption>
<graphic xlink:href="fphys-15-1263475-g002.tif"/>
</fig>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Heatmap of differentially expressed unigenes (DEG) of <italic>A. acris</italic> and <italic>A. ludens</italic> exposed to 6% <italic>H. mancinella</italic> lyophilizates mixed in an artificial rearing medium. The scale indicates the log&#x2082;. Fold change of each of the DEGs and each column corresponds to a replica.</p>
</caption>
<graphic xlink:href="fphys-15-1263475-g003.tif"/>
</fig>
<p>In both species, DEGs were related mainly to cuticle biosynthesis, hypoxia, and xenobiotic metabolism. However, <italic>A. ludens</italic> exhibited a higher number of DEGs compared to <italic>A. acris</italic> (<xref ref-type="table" rid="T2">Table 2</xref>). In both species, several transcripts encoding for chitin-binding and cuticle structural constituent proteins (Chitin_bind_4, Cuticle_4) were identified (in <italic>A. acris</italic> a total of 4 and 40 in <italic>A. ludens</italic>), as well as transcripts encoding hemocyanin proteins (Hemocyanin_C, Hemocyanin_M, Hemocyanin_N) (in <italic>A. acris</italic> a total of 2 and 10 in <italic>A. ludens</italic>). We detected several upregulated transcripts involved in the metabolism of xenobiotics (mainly in Phase one of detoxification) and with redox activity such as P450, COX3, Cytochrom_B, GST_C, GST_N, 3HCDH, adh_short_C2, Aldo_ket_red and Malic_M (in <italic>A. acris</italic> a total of 3 and 19 in <italic>A. ludens</italic>). Also, we detected the upregulation of transcripts encoding for Trypsin and serine proteases involved in digestive processes as well as in the proteolytic activation of zymogens, such as Prophenoloxidase (in <italic>A. acris</italic> a total of 3 and 21 in <italic>A. ludens</italic>) (<xref ref-type="table" rid="T2">Table 2</xref>). However, only in <italic>A. ludens</italic> did we detect the upregulation of transcripts encoding proteins related to fermentative pathways, such as G6PD, 6PGD-NAD_binding. In <italic>A. ludens</italic>, the downregulated transcripts are related to signal transduction processes, transport, ubiquitination, and proteins with kinase activity, such as PI3K, FAT, DUF, and HECT. In <italic>A. acris</italic>, repressed transcripts include those encoding for SNARE proteins, involved in the fusion of vesicles with the membrane (<xref ref-type="table" rid="T2">Table 2</xref>). Please note that we are providing a <xref ref-type="sec" rid="s12">Supplementary Data Sheet</xref> that includes the differentially expressed genes for both species with their log fold changes, annotations, and nucleotide sequences.</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Annotation of the relevant up and downregulated DEGs identified in <italic>A. acris</italic> and <italic>A. ludens</italic> larvae in response to 6% <italic>H. mancinella</italic> lyophilizates mixed in an artificial rearing medium. ID, gene identifier; log<sub>2</sub>FC, mean of unigenes with the same PFAM; Total, number of unigenes from the same PFAM; PFAM, name of the protein family to which the enzyme it encodes belongs (obtained from the description of the eggNOG-mapper website).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center"/>
<th align="center">Regul</th>
<th align="center">PFAM</th>
<th align="center">log<sub>2</sub>FC</th>
<th align="center">
<italic>p</italic>-<sub>value</sub>
</th>
<th align="center">Total</th>
<th align="center">Description</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="8" align="center">
<italic>A. acris</italic>
</td>
<td rowspan="7" align="center">Up</td>
<td align="center">Chitin_bind_4</td>
<td align="center">6.69</td>
<td align="center">0.0056</td>
<td align="center">4</td>
<td align="center">Structural constituent of cuticle</td>
</tr>
<tr>
<td align="center">Protease serine-type, Rhomboid</td>
<td align="center">3.07</td>
<td align="center">0.0091</td>
<td align="center">4</td>
<td align="center">Serine-type endopeptidase activity. It is involved in the biological process described with proteolysis</td>
</tr>
<tr>
<td align="center">ADAM_spacer1,Pep_M12B_propep, Reprolysin,TSP_1</td>
<td align="center">7.85</td>
<td align="center">0.0015</td>
<td align="center">1</td>
<td align="center">Involved in the biological process related to proteolysis</td>
</tr>
<tr>
<td align="center">Hemocyanin_C, Hemocyanin_M, Hemocyanin_N</td>
<td align="center">3.98</td>
<td align="center">0.0016</td>
<td align="center">2</td>
<td align="center">Hemocyanin, all-alpha domain</td>
</tr>
<tr>
<td align="center">Cytochrom_B_C, Cytochrome_B</td>
<td align="center">1.73</td>
<td align="center">0.0262</td>
<td align="center">1</td>
<td align="center">Component of the ubiquinol-cytochrome c reductase complex that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c</td>
</tr>
<tr>
<td align="center">P450</td>
<td align="center">8.42</td>
<td align="center">0.0091</td>
<td align="center">1</td>
<td align="center">Heme binding. It is involved in the biological process described with oxidation-reduction process</td>
</tr>
<tr>
<td align="center">COX3</td>
<td align="center">2.57</td>
<td align="center">0.0494</td>
<td align="center">1</td>
<td align="center">Subunits I, II and III form the functional core of the enzyme complex. Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain, drives oxidative phosphorylation</td>
</tr>
<tr>
<td align="center">Down</td>
<td align="center">SNARE</td>
<td align="center">&#x2212;6.61</td>
<td align="center">0.0421</td>
<td align="center">1</td>
<td align="center">SNARE domain: Facilitate the fusion of vesicles, responsible for the transport of molecules</td>
</tr>
<tr>
<td rowspan="15" align="center">
<italic>A. ludens</italic>
</td>
<td rowspan="12" align="center">Up</td>
<td align="center">Chitin_bind_4</td>
<td align="center">7.83</td>
<td align="center">0.0097</td>
<td align="center">37</td>
<td align="center">Structural constituent of cuticle</td>
</tr>
<tr>
<td align="center">Trypsin, CLIP, Peptidase_S28, Peptidase_S10</td>
<td align="center">4.75</td>
<td align="center">0.0039</td>
<td align="center">21</td>
<td align="center">Serine-type endopeptidase or carboxypeptidase activity. It is involved in the biological process described with proteolysis</td>
</tr>
<tr>
<td align="center">Hemocyanin_C, Hemocyanin_M, Hemocyanin_N</td>
<td align="center">3.45</td>
<td align="center">0.0258</td>
<td align="center">10</td>
<td align="center">Oxidoreductase activity. It is involved in the biological process described with metabolic process. Hemocyanin, all-alpha domain</td>
</tr>
<tr>
<td align="center">3HCDH, 3HCDH_N</td>
<td align="center">3.37</td>
<td align="center">0.0018</td>
<td align="center">5</td>
<td align="center">3-hydroxyacyl-CoA dehydrogenase activity. It is involved in the biological process described with oxidation-reduction process</td>
</tr>
<tr>
<td align="center">6PGD, NAD_binding_2</td>
<td align="center">3.21</td>
<td align="center">0.0004</td>
<td align="center">1</td>
<td align="center">Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH</td>
</tr>
<tr>
<td align="center">adh_short_C2</td>
<td align="center">4.66</td>
<td align="center">0.0003</td>
<td align="center">4</td>
<td align="center">Oxidoreductase activity. It is involved in the biological process described with metabolic process</td>
</tr>
<tr>
<td align="center">Aldo_ket_red</td>
<td align="center">2.43</td>
<td align="center">0.0388</td>
<td align="center">4</td>
<td align="center">It is involved in the biological process described with oxidation-reduction processes</td>
</tr>
<tr>
<td align="center">p450</td>
<td align="center">3.74</td>
<td align="center">0.0001</td>
<td align="center">3</td>
<td align="center">Heme binding. It is involved in the biological process described with oxidation-reduction process</td>
</tr>
<tr>
<td align="center">Cuticle protein</td>
<td align="center">4.81</td>
<td align="center">0.0027</td>
<td align="center">3</td>
<td align="center">Cuticle protein</td>
</tr>
<tr>
<td align="center">GST_C, GST_C_3, GST_N, GST_N_3</td>
<td align="center">1.92</td>
<td align="center">0.0130</td>
<td align="center">2</td>
<td align="center">Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles</td>
</tr>
<tr>
<td align="center">Malic_M, malic</td>
<td align="center">1.71</td>
<td align="center">0.0051</td>
<td align="center">1</td>
<td align="center">It is involved in the biological process described with oxidation-reduction processes</td>
</tr>
<tr>
<td align="center">G6PD_C, G6PD_N</td>
<td align="center">2.12</td>
<td align="center">0.0496</td>
<td align="center">1</td>
<td align="center">Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis</td>
</tr>
<tr>
<td rowspan="3" align="center">Down</td>
<td align="center">PI3K_C2,PI3K_p85B,PI3K_rbd,PI3Ka,PI3_PI4_kinase</td>
<td align="center">&#x2212;6.93</td>
<td align="center">0.0056</td>
<td align="center">2</td>
<td align="center">Phosphotransferase activity, alcohol group as acceptor. It is involved in the biological process described with phosphatidylinositol phosphorylation</td>
</tr>
<tr>
<td align="center">FAT,FATC, PI3_PI4_kinase</td>
<td align="center">&#x2212;7.27</td>
<td align="center">0.0027</td>
<td align="center">1</td>
<td align="center">Belongs to the PI3 PI4-kinase family</td>
</tr>
<tr>
<td align="center">C2, HECT,WW</td>
<td align="center">&#x2212;6.5</td>
<td align="center">0.034</td>
<td align="center">1</td>
<td align="center">Ubiquitin-protein transferase activity</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>We found a larger number of differential pathways mapped in <italic>A. ludens</italic> compared to <italic>A. acris</italic> (<xref ref-type="fig" rid="F4">Figure 4</xref>). In <italic>A. ludens</italic>, we observed the activation of detoxification (<italic>i.e</italic>., Glutathione-peroxide redox reactions, 4-hydroxy-2-nonenal detoxification), pigment (<italic>i.e.,</italic> Pheomelanin biosynthesis, and L-dopa and L-dopachrome biosynthesis), and fermentative metabolic pathways (<italic>i.e.</italic>, glycolysis III, gluconeogenesis III, homolactic fermentation, D-galactose degradation I, and the pentose-phosphate pathway). Also, in <italic>A. ludens</italic> we observed the repression of the protein ubiquitination process, transcripts encoding for proteins involved in the biosynthesis and degradation of amino acids (including Methionine, Isoleucine, Cysteine, Threonine, and Glutamine) and the 3-phosphoinositide biosynthesis (PI3-K); this last (PI3K) was also repressed in <italic>A. acris</italic> (<xref ref-type="fig" rid="F4">Figure 4</xref>). The only route repressed exclusively in <italic>A. acris</italic> was the anandamine degradation pathways (<xref ref-type="fig" rid="F4">Figure 4</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Heatmap of differential metabolic pathways found in <italic>A. acris</italic> and <italic>A. ludens</italic> larvae that were reared in an artificial diet containing 6% <italic>H. mancinella</italic> pulp lyophylizates. The activated pathways are shown in green (or shades thereof) and the repressed ones, in ochre red.</p>
</caption>
<graphic xlink:href="fphys-15-1263475-g004.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>4 Discussion</title>
<p>The study of the molecular responses of herbivorous insects to plant chemical defenses can be useful in our quest to better understand the mechanisms/metabolic routes that are activated to cope with toxic allelochemicals. Using a transcriptomic approach, here we sought to identify the regulated genes in the larvae of two closely phylogenetically related fruit flies with contrasting feeding habits (<italic>i.e.</italic>, monophagous vs. polyphagous), <italic>A. acris</italic> and <italic>A. ludens</italic>, when they are exposed to the pulp of <italic>H. mancinella</italic>, a plant that produces fruit that is highly toxic. In both species, an alteration was observed in the levels of transcript expression coding for enzymes related to cuticle biosynthesis, hypoxia, protease activity (trypsin and serine proteases) and metabolism of xenobiotics (<italic>i.e.</italic>, responses to abiotic stress) (<xref ref-type="table" rid="T2">Table 2</xref>). However, a higher number of these transcripts were only recorded in <italic>A. ludens</italic> compared to <italic>A. acris</italic>, the species that thrives in <italic>H. mancinella</italic> (<xref ref-type="table" rid="T2">Table 2</xref>). In addition to these transcripts found, we were able to map the phosphoinositol biosynthesis pathway (PI3K) in both species (<xref ref-type="fig" rid="F4">Figure 4</xref>). On the other hand, activation in routes related to fermentative metabolism (energy production) and repression of pathways involved in the process of ubiquitination and biosynthesis and degradation of amino acids was only identified in <italic>A. ludens</italic> (<xref ref-type="fig" rid="F4">Figure 4</xref>). The only pathway exclusively affected in <italic>A. acris</italic> was the degradation of anandamides (<xref ref-type="fig" rid="F4">Figure 4</xref>). As will be discussed in what follows, it is likely that the lower regulation observed in <italic>A. acris</italic>, the strict specialist, is likely due to the fact that: 1) larvae of this species have the resistance mechanisms to effectively counteract the negative effects of the toxic allelochemicals present in <italic>H. mancinella</italic> fruit; 2) the low concentration of <italic>H. mancinella</italic> lyophilizate mixed in the diet in which the larvae were reared did not stress the larvae of <italic>A. acris</italic> enough as in nature they are exposed to higher concentrations (an aspect we are currently investigating); 3) these larvae might possibly have a symbiotic intestinal microbiota that facilitates the metabolization of the toxic compounds present in the pulp of <italic>H. mancinella</italic> (something we will research in a future study). Contrary to our prediction, it appears that <italic>A. ludens</italic>, the sister species that evolved into a broad generalist, has maintained most of the broad resistance mechanisms that it shares with <italic>A. acris</italic> which were expressed when exposed to the toxic diet it does not encounter in nature. But <italic>A. ludens</italic> appears to not have developed the specialized biochemical pathways or structural defensive mechanisms <italic>A. acris</italic> possesses that enable it to thrive in the highly toxic <italic>H. mancinella</italic>. A comparative genomics study would be necessary to shed definitive light on this.</p>
<p>The fruit of <italic>H. mancinella</italic> is rich in bioactive polyphenols, such as the ellagitannin Hippomannin A, considered the most toxic compound present in this fruit (<xref ref-type="bibr" rid="B90">Schaeffer et al., 1954</xref>; <xref ref-type="bibr" rid="B56">Lauter and Foote, 1955</xref>; <xref ref-type="bibr" rid="B85">Rao, 1974</xref>; <xref ref-type="bibr" rid="B86">Rao, 1977</xref>; <xref ref-type="bibr" rid="B20">Barbehenn et al., 2006</xref>; <xref ref-type="bibr" rid="B12">Aluja et al., 2020</xref>). The first defense line of insects to face these secondary metabolites is the cuticle. The larval cuticle is a physical barrier that can limit the passage of toxic compounds from the environment to the hemolymph (<xref ref-type="bibr" rid="B83">Pryor et al., 1947</xref>; <xref ref-type="bibr" rid="B21">Barrett, 1983</xref>; <xref ref-type="bibr" rid="B14">Ashida and Brey, 1995</xref>; <xref ref-type="bibr" rid="B15">1997</xref>). We found upregulation of transcripts that encode for cuticle proteins (chitin-binding proteins) in both species (<xref ref-type="table" rid="T2">Table 2</xref>) and could be related to a response leading to the reinforcement of the cuticle of the larvae. In insects, an increase in the thickness of the cuticle has been related to resistance against secondary metabolites present in plants and insecticides (<xref ref-type="bibr" rid="B16">Balabanidou et al., 2018</xref>). For example, when larvae of <italic>Spodoptera frugiperda</italic> were exposed to camptothecin (a pentacyclic quinoline alkaloid isolated from <italic>Camptotheca acuminata</italic> Decne.), histopathological changes were observed in the midgut structure, followed by upregulation of several genes encoding for cuticular proteins (<xref ref-type="bibr" rid="B94">Shu et al., 2021</xref>). Consistent with this, we found that of the upregulated cuticle-proteins, 28 were not orthologous in <italic>A. ludens</italic>, and four were not orthologous in <italic>A. acris</italic>. We note, however, that many of these Unigenes were partial, and this could have biased the resolution of the orthology detection procedure followed. If the above is true, then the damage generated by the pulp of lyophilized <italic>H. mancinella</italic> could first occur through cuticular disruption. Considering this, <italic>A. acris</italic> can likely reinforce the resistance against <italic>H. mancinella</italic> by adapting its cuticle through structural proteins in the cuticle that are more efficient than those found in <italic>A. ludens</italic>, a species whose larvae are not naturally exposed to the toxicants in the fruit of this plant.</p>
<p>We also identified many transcripts encoding proteases, including trypsin (<xref ref-type="table" rid="T2">Table 2</xref>). Trypsin is a non-specific serine endopeptidase responsible for the maturation of various zymogens such as prophenoloxidase (important for immune responses) (<xref ref-type="bibr" rid="B15">Ashida and Brey, 1997</xref>; <xref ref-type="bibr" rid="B82">Perdomo-Morales et al., 2007</xref>; <xref ref-type="bibr" rid="B96">Soares et al., 2011</xref>; <xref ref-type="bibr" rid="B65">Lu et al., 2014</xref>; <xref ref-type="bibr" rid="B108">Wu et al., 2015</xref>). Prophenoloxidase is synthesized in insect hemocytes, actively transported into the cuticle through the epidermis, and randomly distributed in the endocuticle of the body wall (<xref ref-type="bibr" rid="B15">Ashida and Brey, 1997</xref>). Since phenoloxidase (mature version of phenoloxidase) is central to the immune response, as it can oxidize phenolic compounds to induce melanization of the cuticle, it is likely that the phenoloxidase system actively participates as a defense mechanism in response to <italic>H. mancinella</italic> compounds (<xref ref-type="bibr" rid="B65">Lu et al., 2014</xref>; <xref ref-type="bibr" rid="B108">Wu et al., 2015</xref>).</p>
<p>In insects there is an antagonistic interaction between the ingestion of phenols and the assimilation of nutrients, which can cause an inhibition of the digestion of carbohydrates or proteins, affecting their nutrition, growth, and development (<xref ref-type="bibr" rid="B91">Schopf, 1986</xref>; <xref ref-type="bibr" rid="B40">Felton et al., 1992</xref>; <xref ref-type="bibr" rid="B48">Haukioja et al., 2002</xref>; <xref ref-type="bibr" rid="B80">Pascacio-Villaf&#xe1;n et al., 2016</xref>; <xref ref-type="bibr" rid="B84">Punia et al., 2020</xref>; <xref ref-type="bibr" rid="B99">Thitz et al., 2020</xref>). This antagonistic interaction is produced due to the inhibition of digestive enzymes by polyphenols. In the case of ellagitannins, it has been documented that they can inhibit alfa-amylase and trypsin activity (<xref ref-type="bibr" rid="B72">McDougall and Stewart, 2005</xref>). Many phytophagous insects counteract the polyphenols&#x27; effect by a high protease synthesis rate (<xref ref-type="bibr" rid="B28">Brioschi et al., 2007</xref>; <xref ref-type="bibr" rid="B98">Spit et al., 2014</xref>; <xref ref-type="bibr" rid="B112">Zhu-Salzman and Zeng, 2015</xref>), a mechanism we identified in both fly species in this study. We identified the upregulation of trypsin and serine proteases, 21 in <italic>A. ludens</italic> and four in <italic>A. acris</italic>. However, our results suggest differences in these enzymes in both flies, with two peptidases in <italic>A. acris</italic> not being orthologous with <italic>A. ludens</italic>. On the other hand, 13 peptidases present in <italic>A. ludens</italic> were not orthologous in <italic>A. acris</italic>.</p>
<p>Interestingly, one non-orthologous serine-type endopeptidase in <italic>A. acris</italic> is a rhomboid-like1 protein. Rhomboid serine proteases, together with ADAM (a disintegrin and metalloproteinase) proteins, are involved in the Epidermal Growth Factor Receptor (EGFR) pathway, catalyzing the cleavage of membrane-tethered epidermal growth factor (EGF)-like ligands, being a regulator and activator of EGFR (<xref ref-type="bibr" rid="B58">Lee et al., 2001</xref>; <xref ref-type="bibr" rid="B101">Urban, 2002</xref>; <xref ref-type="bibr" rid="B27">Blobel, 2005</xref>). In <italic>A. acris</italic>, a homologous of the ADAM metalloprotease was upregulated (Unigen: acris005570). In <italic>Drosophila</italic>, EGFR regulates the penetration resistance to the insecticide avermectin, regulating the chitin synthesis and promoting the increment of peritrophic membrane thickness in larvae resistant to avermectin (<xref ref-type="bibr" rid="B34">Chen et al., 2016</xref>). Interestingly in human cells, EGFR activation can be inhibited by epigallocatechin-gallate, triggering the internalization of the EGFR (<xref ref-type="bibr" rid="B1">Adachi et al., 2007</xref>; <xref ref-type="bibr" rid="B2">Adachi et al., 2008</xref>). Even though the EGFR pathway seems conserved in all eukaryotes, differences could exist between <italic>A. ludens</italic> and <italic>A. acris</italic>, based on the difference in the rhomboid protein, that hypothetically could be related to the maturation of the EGFR-ligand.</p>
<p>When <italic>A. ludens</italic> larvae are reared in diets or fruit containing high concentrations of phenolic compounds (<italic>e.g.</italic>, <italic>Malus domestica</italic> Borkh), a reduction in egg production, larval weight, and an increase in larval development and pupation times has been recorded (<xref ref-type="bibr" rid="B9">Aluja et al., 2014</xref>; <xref ref-type="bibr" rid="B79">Pascacio-Villaf&#xe1;n et al., 2014</xref>). The induction of deformities was also observed in pupae, as well as an increase in mortality and the duration of the biological cycle, which lasts up to three times more compared to larvae reared on natural hosts such as grapefruit, with a lower content of phenolic compounds (<xref ref-type="bibr" rid="B9">Aluja et al., 2014</xref>; <xref ref-type="bibr" rid="B79">Pascacio-Villaf&#xe1;n et al., 2014</xref>). At a molecular level, phenolic compounds bind to the amino acid-building proteins in the diet and/or to digestive tract enzymes (<xref ref-type="bibr" rid="B91">Schopf, 1986</xref>; <xref ref-type="bibr" rid="B41">Felton and Duffey, 1991</xref>). This happens because the aromatic rings of amino acids and polyphenols interact through &#x3c0;-type interactions, destabilizing the tridimensional structure of proteins, which induces protein denaturation and coalescence with other proteins (<xref ref-type="bibr" rid="B3">Adamczyk et al., 2012</xref>; <xref ref-type="bibr" rid="B33">Chen et al., 2019</xref>). These effects inactivate the function of the proteins affected, and the biological processes in which they participate (<xref ref-type="bibr" rid="B47">Haslam, 2007</xref>; <xref ref-type="bibr" rid="B97">Spalinger et al., 2010</xref>; <xref ref-type="bibr" rid="B3">Adamczyk et al., 2012</xref>). Tannins, a particular class of polyphenols, can produce high levels of semiquinones and quinones, which affect the redox status of the cell contributing to poor absorption of nutrients and generation of cytotoxic effects in the affected tissues (<xref ref-type="bibr" rid="B13">Appel, 1993</xref>; <xref ref-type="bibr" rid="B89">Salminen et al., 2004</xref>; <xref ref-type="bibr" rid="B18">Barbehenn et al., 2005</xref>; <xref ref-type="bibr" rid="B19">Barbehenn and Constabel, 2011</xref>).</p>
<p>In addition, and in contrast to what was observed in <italic>A. acris</italic>, in <italic>A. ludens</italic> a high number of transcripts that encode for proteins involved in energy processes and in the biosynthesis and degradation of amino acids were found (<xref ref-type="fig" rid="F4">Figure 4</xref>). So, not surprisingly, the larvae of <italic>A. ludens</italic> suffered more metabolic changes than <italic>A. acris</italic>. For example, we observed the activation of fermentative pathways, inferring that energy metabolism was one of the most affected aspects in <italic>A. ludens</italic>. This effect was not observed in <italic>A. acris</italic>, suggesting that the basal defense mechanisms of <italic>A. acris</italic> were sufficient to prevent the metabolic effects observed in <italic>A. ludens</italic>.</p>
<p>The transcriptional responses of both phylogenetically related species involve the activation of transcripts that encode for similar enzymes, such as enzymes with heme-binding sites, proteases, or chitin-binding enzymes (<xref ref-type="table" rid="T2">Table 2</xref>). It is likely that the high concentration of tannins present in the pulp of <italic>H. mancinella</italic>, together with the metal chelating activity of the o-dihydroxyphenyl groups of tannins, causes a decrease in the bioavailability of iron, copper, and other metallic macro or micronutrients (<xref ref-type="bibr" rid="B71">McDonald et al., 1996</xref>; <xref ref-type="bibr" rid="B6">Afsana et al., 2004</xref>; <xref ref-type="bibr" rid="B42">Fiesel et al., 2015</xref>; <xref ref-type="bibr" rid="B36">Delimont et al., 2017</xref>). So, if tannins were chelating metals, proteins that have an active site coordinated with metal ions, such as those with heme groups, would become dysfunctional. For example, the activation of genes that encode for hemocyanin (a heme-containing protein) could cause a decrease in the oxygen transport activity through the hemolymph (<xref ref-type="bibr" rid="B37">Engel and Brouwer, 1991</xref>; <xref ref-type="bibr" rid="B69">Martin and Hose, 1995</xref>). Therefore, if the tannins are interfering with the oxygen transport activity, and favoring hypoxic conditions, a plausible countermeasure to compensate hypoxia could be the transcriptional activation of hemocyanins (<xref ref-type="bibr" rid="B37">Engel and Brouwer, 1991</xref>; <xref ref-type="bibr" rid="B69">Martin and Hose, 1995</xref>; <xref ref-type="bibr" rid="B88">Salminen and Karonen, 2011</xref>). Also, the decrease in the concentration of oxygen available in the hemolymph would explain the activation of the fermentative pathways observed in <italic>A. ludens</italic>. Usually, the activation of fermentative pathways leads to the rapid production of energy, but this process is insufficient when these conditions are maintained for a long time, affecting the metabolic performance of the organism (<xref ref-type="bibr" rid="B50">Hoback and Stanley, 2001</xref>).</p>
<p>In both species, the activation of genes coding for proteins related to the metabolism of xenobiotics and in oxidation-reduction processes was also found (<xref ref-type="table" rid="T2">Table 2</xref>). As was the case with other defensive responses, in <italic>A. ludens</italic> the number of these transcripts was much higher compared to <italic>A. acris</italic>. In this sense, the activation of transcripts related to the first stage of xenobiotic metabolism is relevant, since these enzymes represent one of the first lines of defense against toxic compounds (<xref ref-type="bibr" rid="B61">Li et al., 2007</xref>). So, the activation of transcripts encoding for P450 monooxygenase enzymes, glutathione-S-transferases, and transporters could be related to the coordinated response of detoxification pathways and toxin excretion (<xref ref-type="bibr" rid="B32">Chahine and O&#x27;Donnell, 2012</xref>; <xref ref-type="bibr" rid="B111">Zheng et al., 2022</xref>). In future studies, it would be of interest to identify the anatomical site where these transcripts are altered.</p>
<p>Repression of signaling via phosphoinositides was also identified in both species. For example, in <italic>A. ludens</italic> the transcript of phosphatidylinositol 4, 5-bisphosphate kinase (PI3K) was specifically repressed (<xref ref-type="fig" rid="F4">Figure 4</xref>). PI3K is an important regulator of cell growth in insects, as it inhibits the signaling that leads to a reduction in body size, tissue growth, and starvation (<xref ref-type="bibr" rid="B29">Britton et al., 2002</xref>; <xref ref-type="bibr" rid="B62">Lin and Smagghe, 2019</xref>). This happens because PI3K activity is regulated by the availability of protein in the diet and coordinates cellular metabolism based on the nutritional conditions of the individual (<xref ref-type="bibr" rid="B29">Britton et al., 2002</xref>).</p>
<p>Notably, in <italic>A. acris</italic>, the anandamide degradation pathway was repressed (<xref ref-type="fig" rid="F4">Figure 4</xref>). Anandamide is a bioactive fatty acid amide widely studied in mammals that functions as a messenger molecule regulating feeding behavior (<italic>e.g.</italic>, hunger, and satiety perception), among other functions (<xref ref-type="bibr" rid="B93">Sharkey et al., 2014</xref>). However, in insects, there are few studies on the metabolism of anandamide and its functions (<xref ref-type="bibr" rid="B17">Ban et al., 2003</xref>; <xref ref-type="bibr" rid="B39">Farrell and Merkler, 2008</xref>; <xref ref-type="bibr" rid="B100">Tortoriello et al., 2013</xref>; <xref ref-type="bibr" rid="B51">Jeffries et al., 2014</xref>).</p>
<p>In other study models such as the plant <italic>Arabidopsis thaliana</italic>, it has been reported that fungi toxin elimination occurs via a vesicle-mediated transport which is translocated from the plasma membrane to vacuoles (<xref ref-type="bibr" rid="B102">Wang et al., 2020</xref>). This mechanism, which is not exclusive to plants, could occur also in insects in which the detoxification strategy includes catabolism and the sequestration of plant-defense secondary metabolites. The above can explain, at least in part, why proteins like SNARE are differentially expressed. SNARE proteins represent a superfamily of small, mostly membrane-anchored proteins that catalyze the fusion of membranes in all eukaryotic cells (<xref ref-type="bibr" rid="B67">Margiotta, 2022</xref>).</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>5 Conclusion</title>
<p>The larvae of <italic>A. acris</italic> and <italic>A. ludens</italic> responded at a transcriptional level to counteract the negative effects caused by the ingestion of <italic>H. mancinella</italic> pulp, expressing overall similar mechanisms. However, in <italic>A. ludens</italic> the number of transcripts altered was much greater than in <italic>A. acris</italic>. These transcriptional responses of both species were mainly related to hypoxia, cuticle biosynthesis, and xenobiotic metabolism. Our results indicate that <italic>A. acris</italic> can easily handle a low level of toxicity in <italic>H. mancinella</italic> lyophilizates added to an artificial diet (6%), but additional experiments with higher concentrations of the toxicants in the fruit are needed to fully understand the biochemical/molecular mechanisms larvae of this species use to degrade or block these deleterious allelochemicals. From our results it becomes clear that during the divergence of these phylogenetically close species, <italic>A. acris</italic> developed adaptations to deal with the toxicants of its only known host, whereas <italic>A. ludens</italic>, following another evolutionary path, maintained certain common biochemical routes, expressed here when exposed to the toxicants of a fruit that is not a host in nature, and apparently lost others that inhibit its development in <italic>H. mancinella</italic>. But further research is needed to clarify if <italic>A. acris</italic> indeed evolved novel toxicant degradation/blocking routes, or if its gut contains symbiotic bacteria that are the ones that metabolize the toxicants. This is needed as in this study we studied the transcriptome of entire larvae, including the gut. In future studies we will concentrate on the gut and the bacteria contained in it. Further research is also needed on possible morphological adaptations in the midgut of the larvae (e.g., thickness of gut walls) through which the entrance of toxicants via the gut into the hemolymph could be blocked.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The raw datasets for this study can be found in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI) under the accession number PRJNA957832.</p>
</sec>
<sec id="s7">
<title>Ethics statement</title>
<p>The manuscript presents research on animals that do not require ethical approval for their study.</p>
</sec>
<sec id="s8">
<title>Author contributions</title>
<p>EG-S: Data curation, Investigation, Software, Visualization, Writing&#x2013;original draft. DC-G: Data curation, Formal Analysis, Software, Supervision, Visualization, Writing&#x2013;review and editing. EI-L: Conceptualization, Methodology, Supervision, Writing&#x2013;review and editing. MA: Conceptualization, Funding acquisition, Methodology, Supervision, Writing&#x2013;original draft, Writing&#x2013;review and editing.</p>
</sec>
<sec sec-type="funding-information" id="s9">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was funded by grants to MA from the Campa&#xf1;a Nacional Contra Moscas de la Fruta via an Agreement between the Consejo Nacional Consultivo Fitosanitario (CONACOFI) and INECOL (Project Numbers 41013&#x2013;2019, 80124&#x2013;2020 and 80147&#x2013;2021). Additional funds in the form of salaries as well as research facilities and equipment were provided by INECOL to MA and EIL.</p>
</sec>
<ack>
<p>We gratefully acknowledge the valuable contributions to the research being reported here made during tutorial exams by Dr. Jing-Ke Weng, Massachusetts Institute of Technology. We gratefully acknowledge the expert technical help provided by Emilio Acosta Velasco, Erick J. Enciso Ort&#xed;z, Alma R. Alt&#xfa;zar Molina and Juan Carlos Conde Alarc&#xf3;n. We also gratefully acknowledge the technical assistance of Alexandro G. Alonso S., who prepared and sequenced the libraries. Alma R. Alt&#xfa;zar Molina also provided editorial help and helped us format the final version of the manuscript. We also acknowledge the critical support provided by Emanuel Villaf&#xe1;n de la Torre, manager of INECOL&#x2019;s supercomputing center where all bioinformatic analyses were run. We finally acknowledge the comments made during tutorial exams and the considerable time investment during a first failed attempt at bioinformatically analyzing the data by Dr. Jes&#xfa;s Alejandro Zamora Brise&#xf1;o (Instituto de Ecolog&#xed;a, A.C&#x2014;INECOL). This publication reports the results of a master&#x2019;s degree thesis by EAG-S directed by MA. EG-S gratefully acknowledges a fellowship from the Consejo Nacional de Ciencia y Tecnolog&#xed;a&#x2013;CONACyT.</p>
</ack>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s12">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fphys.2024.1263475/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fphys.2024.1263475/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Image2.pdf" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Image1.pdf" id="SM2" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="DataSheet1.xlsx" id="SM3" mimetype="application/xlsx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adachi</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Nagao</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Ingolfsson</surname>
<given-names>H. I.</given-names>
</name>
<name>
<surname>Maxfield</surname>
<given-names>F. R.</given-names>
</name>
<name>
<surname>Andersen</surname>
<given-names>O. S.</given-names>
</name>
<name>
<surname>Kopelovich</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2007</year>). <article-title>The inhibitory effect of (&#x2212;)-Epigallocatechin Gallate on activation of the epidermal growth factor receptor is associated with altered lipid order in HT29 colon cancer cells</article-title>. <source>Cancer Res.</source> <volume>67</volume>, <fpage>6493</fpage>&#x2013;<lpage>6501</lpage>. <pub-id pub-id-type="doi">10.1158/0008-5472.CAN-07-0411</pub-id>
</citation>
</ref>
<ref id="B2">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adachi</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Nagao</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>To</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Joe</surname>
<given-names>A. K.</given-names>
</name>
<name>
<surname>Shimizu</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Matsushima-Nishiwaki</surname>
<given-names>R.</given-names>
</name>
<etal/>
</person-group> (<year>2008</year>). <article-title>(-)-Epigallocatechin gallate causes internalization of the epidermal growth factor receptor in human colon cancer cells</article-title>. <source>Carcinogenesis</source> <volume>29</volume>, <fpage>1986</fpage>&#x2013;<lpage>1993</lpage>. <pub-id pub-id-type="doi">10.1093/carcin/bgn128</pub-id>
</citation>
</ref>
<ref id="B3">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adamczyk</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Salminen</surname>
<given-names>J.-P.</given-names>
</name>
<name>
<surname>Smolander</surname>
<given-names>and A.</given-names>
</name>
<name>
<surname>Kitunen</surname>
<given-names>V.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Precipitation of proteins by tannins: effects of concentration, protein/tannin ratio and pH</article-title>. <source>Int. J. Food Sci. Technol.</source> <volume>47</volume>, <fpage>875</fpage>&#x2013;<lpage>878</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2621.2011.02911.x</pub-id>
</citation>
</ref>
<ref id="B4">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adler</surname>
<given-names>L. S.</given-names>
</name>
<name>
<surname>Schmitt</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Bowers</surname>
<given-names>M. D.</given-names>
</name>
</person-group> (<year>1995</year>). <article-title>Genetic variation in defensive chemistry in <italic>Plantago lanceolata</italic> (Plantaginaceae) and its effect on the specialist herbivore <italic>Junonia coenia</italic> (Nymphalidae)</article-title>. <source>Oecologia</source> <volume>101</volume>, <fpage>75</fpage>&#x2013;<lpage>85</lpage>. <pub-id pub-id-type="doi">10.1007/BF00328903</pub-id>
</citation>
</ref>
<ref id="B5">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adolf</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Hecker</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>1984</year>). <article-title>On the active principles of the spurge family, X. Skin irritants, cocarcinogens, and cryptic cocarcinogens from the latex of the manchineel tree</article-title>. <source>J. Nat. Prod.</source> <volume>47</volume>, <fpage>482</fpage>&#x2013;<lpage>496</lpage>. <pub-id pub-id-type="doi">10.1021/np50033a015</pub-id>
</citation>
</ref>
<ref id="B6">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Afsana</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Shiga</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Ishizuka</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Hara</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Reducing effect of ingesting tannic acid on the absorption of iron, but not of zinc, copper, and manganese by rats</article-title>. <source>Biosci. Biotechnol. Biochem.</source> <volume>68</volume>, <fpage>584</fpage>&#x2013;<lpage>592</lpage>. <pub-id pub-id-type="doi">10.1271/bbb.68.584</pub-id>
</citation>
</ref>
<ref id="B7">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Agrawal</surname>
<given-names>A. A.</given-names>
</name>
<name>
<surname>Kurashige</surname>
<given-names>N. S.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>A role for isothiocyanates in plant resistance against the specialist herbivore <italic>Pieris rapae</italic>
</article-title>. <source>J. Chem. Ecol.</source> <volume>29</volume>, <fpage>1403</fpage>&#x2013;<lpage>1415</lpage>. <pub-id pub-id-type="doi">10.1023/A:1024265420375</pub-id>
</citation>
</ref>
<ref id="B8">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ali</surname>
<given-names>J. G.</given-names>
</name>
<name>
<surname>Agrawal</surname>
<given-names>A. A.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Specialist <italic>versus</italic> generalist insect herbivores and plant defense</article-title>. <source>Trends Plant Sci.</source> <volume>17</volume>, <fpage>293</fpage>&#x2013;<lpage>302</lpage>. <pub-id pub-id-type="doi">10.1016/j.tplants.2012.02.006</pub-id>
</citation>
</ref>
<ref id="B9">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Birke</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Ceymann</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Guill&#xe9;n</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Arrigoni</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Baumgartner</surname>
<given-names>D.</given-names>
</name>
<etal/>
</person-group> (<year>2014</year>). <article-title>Agroecosystem resilience to an invasive insect species that could expand its geographical range in response to global climate change</article-title>. <source>Agric. Ecosyst. Environ.</source> <volume>186</volume>, <fpage>54</fpage>&#x2013;<lpage>63</lpage>. <pub-id pub-id-type="doi">10.1016/j.agee.2014.01.017</pub-id>
</citation>
</ref>
<ref id="B10">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Mangan</surname>
<given-names>R. L.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Fruit fly (Diptera: Tephritidae) host status determination: critical conceptual, methodological, and regulatory considerations</article-title>. <source>Annu. Rev. Entomol.</source> <volume>53</volume>, <fpage>473</fpage>&#x2013;<lpage>502</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.ento.53.103106.093350</pub-id>
</citation>
</ref>
<ref id="B11">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Norrbom</surname>
<given-names>A. L.</given-names>
</name>
</person-group> (<year>2000</year>). <source>Fruit flies (Tephritidae): phylogeny and evolution of behavior</source>. <publisher-loc>Boca Raton, FL</publisher-loc>: <publisher-name>CRC Press</publisher-name>.</citation>
</ref>
<ref id="B12">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Pascacio-Villaf&#xe1;n</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Alt&#xfa;zar-Molina</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Monribot-Villanueva</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Guerrero-Analco</surname>
<given-names>J. A.</given-names>
</name>
<name>
<surname>Enciso</surname>
<given-names>E.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Insights into the interaction between the monophagous tephritid fly <italic>Anastrepha acris</italic> and its highly toxic host <italic>Hippomane mancinella</italic> (Euphorbiaceae)</article-title>. <source>J. Chem. Ecol.</source> <volume>46</volume>, <fpage>430</fpage>&#x2013;<lpage>441</lpage>. <pub-id pub-id-type="doi">10.1007/s10886-020-01164-8</pub-id>
</citation>
</ref>
<ref id="B13">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Appel</surname>
<given-names>H. M.</given-names>
</name>
</person-group> (<year>1993</year>). <article-title>Phenolics in ecological interactions: the importance of oxidation</article-title>. <source>J. Chem. Ecol.</source> <volume>19</volume>, <fpage>1521</fpage>&#x2013;<lpage>1552</lpage>. <pub-id pub-id-type="doi">10.1007/BF00984895</pub-id>
</citation>
</ref>
<ref id="B14">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ashida</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Brey</surname>
<given-names>P. T.</given-names>
</name>
</person-group> (<year>1995</year>). <article-title>Role of the integument in insect defense: pro-phenol oxidase cascade in the cuticular matrix</article-title>. <source>Proc. Natl. Acad. Sci. U.S.A.</source> <volume>92</volume>, <fpage>10698</fpage>&#x2013;<lpage>10702</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.92.23.10698</pub-id>
</citation>
</ref>
<ref id="B15">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Ashida</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Brey</surname>
<given-names>P. T.</given-names>
</name>
</person-group> (<year>1997</year>). &#x201c;<article-title>Recent advances in research on the insect phenoloxidase cascade</article-title>,&#x201d; in <source>Molecular mechanisms of immune responses in insects</source>. Editors <person-group person-group-type="editor">
<name>
<surname>Brey</surname>
<given-names>P. T.</given-names>
</name>
<name>
<surname>Hultmark</surname>
<given-names>D.</given-names>
</name>
</person-group> (<publisher-loc>London</publisher-loc>: <publisher-name>Chapman and Hall</publisher-name>), <fpage>135</fpage>&#x2013;<lpage>172</lpage>.</citation>
</ref>
<ref id="B16">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Balabanidou</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Grigoraki</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Vontas</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Insect cuticle: a critical determinant of insecticide resistance</article-title>. <source>Curr. Opin. Insect Sci.</source> <volume>27</volume>, <fpage>68</fpage>&#x2013;<lpage>74</lpage>. <pub-id pub-id-type="doi">10.1016/j.cois.2018.03.001</pub-id>
</citation>
</ref>
<ref id="B17">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ban</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Scaloni</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Brandazza</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Angeli</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Yan</surname>
<given-names>Y.</given-names>
</name>
<etal/>
</person-group> (<year>2003</year>). <article-title>Chemosensory proteins of <italic>Locusta migratoria</italic>
</article-title>. <source>Insect Mol. Biol.</source> <volume>12</volume>, <fpage>125</fpage>&#x2013;<lpage>134</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-2583.2003.00394.x</pub-id>
</citation>
</ref>
<ref id="B18">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Barbehenn</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Cheek</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Gasperut</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Lister</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Maben</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>Phenolic compounds in Red Oak and Sugar Maple leaves have prooxidant activities in the midgut fluids of <italic>Malacosoma disstria</italic> and <italic>Orgyia leucostigma</italic> caterpillars</article-title>. <source>J. Chem. Ecol.</source> <volume>31</volume>, <fpage>969</fpage>&#x2013;<lpage>988</lpage>. <pub-id pub-id-type="doi">10.1007/s10886-005-4242-4</pub-id>
</citation>
</ref>
<ref id="B19">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Barbehenn</surname>
<given-names>R. V.</given-names>
</name>
<name>
<surname>Constabel</surname>
<given-names>P. C.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Tannins in plant-herbivore interactions</article-title>. <source>Phytochem</source> <volume>72</volume>, <fpage>1551</fpage>&#x2013;<lpage>1565</lpage>. <pub-id pub-id-type="doi">10.1016/j.phytochem.2011.01.040</pub-id>
</citation>
</ref>
<ref id="B20">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Barbehenn</surname>
<given-names>R. V.</given-names>
</name>
<name>
<surname>Jones</surname>
<given-names>C. P.</given-names>
</name>
<name>
<surname>Hagerman</surname>
<given-names>A. E.</given-names>
</name>
<name>
<surname>Karonen</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Salminen</surname>
<given-names>J. P.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Ellagitannins have greater oxidative activities than condensed tannins and galloyl glucoses at high pH: potential impact on caterpillars</article-title>. <source>J. Chem. Ecol.</source> <volume>32</volume>, <fpage>2253</fpage>&#x2013;<lpage>2267</lpage>. <pub-id pub-id-type="doi">10.1007/s10886-006-9143-7</pub-id>
</citation>
</ref>
<ref id="B21">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Barrett</surname>
<given-names>F. M.</given-names>
</name>
</person-group> (<year>1983</year>). <article-title>Purification of phenolic compounds and a phenoloxidase from larval cuticle of the red-humped oakworm, <italic>Symmerista cannicosta</italic> Francl</article-title>. <source>Arch. Insect Biochem. Physiol.</source> <volume>1</volume>, <fpage>213</fpage>&#x2013;<lpage>223</lpage>. <pub-id pub-id-type="doi">10.1002/arch.940010304</pub-id>
</citation>
</ref>
<ref id="B22">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ben-Yosef</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Pasternak</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Jurkevitch</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Yuval</surname>
<given-names>B.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Symbiotic bacteria enable olive fly larvae to overcome host defences</article-title>. <source>R. Soc. Open Sci.</source> <volume>2</volume>, <fpage>150170</fpage>. <pub-id pub-id-type="doi">10.1098/rsos.150170</pub-id>
</citation>
</ref>
<ref id="B23">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Berenbaum</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Zangerl</surname>
<given-names>A. R.</given-names>
</name>
<name>
<surname>Lee</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>1989</year>). <article-title>Chemical barriers to adaptation by a specialist herbivore</article-title>. <source>Oecologia</source> <volume>80</volume>, <fpage>501</fpage>&#x2013;<lpage>506</lpage>. <pub-id pub-id-type="doi">10.1007/BF00380073</pub-id>
</citation>
</ref>
<ref id="B24">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Birke</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Acosta</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Limits to the host range of the highly polyphagous tephritid fruit fly <italic>Anastrepha ludens</italic> in its natural habitat</article-title>. <source>Bull. Entomol. Res.</source> <volume>105</volume>, <fpage>743</fpage>&#x2013;<lpage>753</lpage>. <pub-id pub-id-type="doi">10.1017/S0007485315000711</pub-id>
</citation>
</ref>
<ref id="B25">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Birke</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Do mothers really know best? Complexities in testing the preference-performance hypothesis in polyphagous frugivorous fruit flies</article-title>. <source>Bull. Entomol. Res.</source> <volume>108</volume>, <fpage>674</fpage>&#x2013;<lpage>684</lpage>. <pub-id pub-id-type="doi">10.1017/S0007485317001213</pub-id>
</citation>
</ref>
<ref id="B26">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Blighe</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Rana</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Lewis</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>Enhanced Volcano: publication-ready volcano plots with enhanced colouring and labeling</article-title>. <comment>R Package Version 1.10.0. Available at: <ext-link ext-link-type="uri" xlink:href="https://github.com/kevinblighe/EnhancedVolcano">https://github.com/kevinblighe/EnhancedVolcano</ext-link>.</comment>
</citation>
</ref>
<ref id="B27">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Blobel</surname>
<given-names>C. P.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>ADAMs: key components in EGFR signalling and development</article-title>. <source>Nat. Rev. Mol. Cell Biol.</source> <volume>6</volume>, <fpage>32</fpage>&#x2013;<lpage>43</lpage>. <pub-id pub-id-type="doi">10.1038/nrm1548</pub-id>
</citation>
</ref>
<ref id="B28">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Brioschi</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Nadalini</surname>
<given-names>L. D.</given-names>
</name>
<name>
<surname>Bengtson</surname>
<given-names>M. H.</given-names>
</name>
<name>
<surname>Sogayar</surname>
<given-names>M. C.</given-names>
</name>
<name>
<surname>Moura</surname>
<given-names>D. S.</given-names>
</name>
<name>
<surname>Silva-Filho</surname>
<given-names>M. C.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>General up regulation of <italic>Spodoptera frugiperda</italic> trypsins and chymotrypsins allows its adaptation to soybean proteinase inhibitor</article-title>. <source>Insect biochem. Mol. Biol.</source> <volume>37</volume>, <fpage>1283</fpage>&#x2013;<lpage>1290</lpage>. <pub-id pub-id-type="doi">10.1016/j.ibmb.2007.07.016</pub-id>
</citation>
</ref>
<ref id="B29">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Britton</surname>
<given-names>J. S.</given-names>
</name>
<name>
<surname>Lockwood</surname>
<given-names>W. K.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Cohen</surname>
<given-names>S. M.</given-names>
</name>
<name>
<surname>Edgar</surname>
<given-names>B. A.</given-names>
</name>
</person-group> (<year>2002</year>). <article-title>Drosophila&#x2019;s insulin/PI3-kinase pathway coordinates cellular metabolism with nutritional conditions</article-title>. <source>Dev. Cell.</source> <volume>2</volume>, <fpage>239</fpage>&#x2013;<lpage>249</lpage>. <pub-id pub-id-type="doi">10.1016/S1534-5807(02)00117-X</pub-id>
</citation>
</ref>
<ref id="B30">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cantalapiedra</surname>
<given-names>C. P.</given-names>
</name>
<name>
<surname>Hern&#xe1;ndez-Plaza</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Letunic</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Bork</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Huerta-Cepas</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>EggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale</article-title>. <source>Mol. Biol. Evol.</source> <volume>38</volume>, <fpage>5825</fpage>&#x2013;<lpage>5829</lpage>. <pub-id pub-id-type="doi">10.1093/molbev/msab293</pub-id>
</citation>
</ref>
<ref id="B31">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Celorio-Mancera</surname>
<given-names>M. D.</given-names>
</name>
<name>
<surname>Ahn</surname>
<given-names>S. J.</given-names>
</name>
<name>
<surname>Vogel</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Heckel</surname>
<given-names>D. G.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Transcriptional responses underlying the hormetic and detrimental effects of the plant secondary metabolite gossypol on the generalist herbivore <italic>Helicoverpa armigera</italic>
</article-title>. <source>BMC Genom</source> <volume>12</volume>, <fpage>575</fpage>. <pub-id pub-id-type="doi">10.1186/1471-2164-12-575</pub-id>
</citation>
</ref>
<ref id="B32">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chahine</surname>
<given-names>S. C. A.</given-names>
</name>
<name>
<surname>O&#x2019;Donnell</surname>
<given-names>M. J.</given-names>
</name>
<name>
<surname>O&#x27;Donnell</surname>
<given-names>M. J.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Genetic knockdown of a single organic anion transporter alters the expression of functionally related genes in Malpighian tubules of <italic>Drosophila melanogaster</italic>
</article-title>. <source>J. Exp. Biol.</source> <volume>215</volume>, <fpage>2601</fpage>&#x2013;<lpage>2610</lpage>. <pub-id pub-id-type="doi">10.1242/jeb.071100</pub-id>
</citation>
</ref>
<ref id="B33">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chen</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Feng</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Miao</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Interaction between soybean protein and tea polyphenols under high pressure</article-title>. <source>Food Chem.</source> <volume>277</volume>, <fpage>632</fpage>&#x2013;<lpage>638</lpage>. <pub-id pub-id-type="doi">10.1016/j.foodchem.2018.11.024</pub-id>
</citation>
</ref>
<ref id="B34">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chen</surname>
<given-names>L.-P.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Sun</surname>
<given-names>Y. J.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>Y. J.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Direct interaction of avermectin with epidermal growth factor receptor mediates the penetration resistance in <italic>Drosophila</italic> larvae</article-title>. <source>Open Biol.</source> <volume>6</volume>, <fpage>150231</fpage>. <pub-id pub-id-type="doi">10.1098/rsob.150231</pub-id>
</citation>
</ref>
<ref id="B35">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cornell</surname>
<given-names>H. V.</given-names>
</name>
<name>
<surname>Hawkins</surname>
<given-names>B. A.</given-names>
</name>
</person-group> (<year>2003</year>). <article-title>Herbivore responses to plant secondary compounds: a test of phytochemical coevolution theory</article-title>. <source>Am. Nat.</source> <volume>161</volume>, <fpage>507</fpage>&#x2013;<lpage>522</lpage>. <pub-id pub-id-type="doi">10.1086/368346</pub-id>
</citation>
</ref>
<ref id="B36">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Delimont</surname>
<given-names>N. M.</given-names>
</name>
<name>
<surname>Haub</surname>
<given-names>M. D.</given-names>
</name>
<name>
<surname>Lindshield</surname>
<given-names>B. L.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>The impact of tannin consumption on iron bioavailability and status: a narrative review</article-title>. <source>Curr. Dev. Nutr.</source> <volume>1</volume>, <fpage>1</fpage>&#x2013;<lpage>12</lpage>. <pub-id pub-id-type="doi">10.3945/cdn.116.000042</pub-id>
</citation>
</ref>
<ref id="B37">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Engel</surname>
<given-names>D. W.</given-names>
</name>
<name>
<surname>Brouwer</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>1991</year>). <article-title>Short-term metallothionein and copper changes in blue crabs at ecdysis</article-title>. <source>Biol. Bull.</source> <volume>180</volume>, <fpage>447</fpage>&#x2013;<lpage>452</lpage>. <pub-id pub-id-type="doi">10.2307/1542345</pub-id>
</citation>
</ref>
<ref id="B38">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Evans</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Loose</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts</article-title>. <source>BMC Bioinform</source> <volume>16</volume>, <fpage>376</fpage>. <pub-id pub-id-type="doi">10.1186/s12859-015-0813-8</pub-id>
</citation>
</ref>
<ref id="B39">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Farrell</surname>
<given-names>E. K.</given-names>
</name>
<name>
<surname>Merkler</surname>
<given-names>D. J.</given-names>
</name>
</person-group> (<year>2008</year>). <article-title>Biosynthesis, degradation, and pharmacological importance of the fatty acid amides</article-title>. <source>Drug Discov. Today.</source> <volume>13</volume>, <fpage>558</fpage>&#x2013;<lpage>568</lpage>. <pub-id pub-id-type="doi">10.1016/j.drudis.2008.02.006</pub-id>
</citation>
</ref>
<ref id="B40">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Felton</surname>
<given-names>G. W.</given-names>
</name>
<name>
<surname>Donato</surname>
<given-names>K. K.</given-names>
</name>
<name>
<surname>Broadway</surname>
<given-names>R. M.</given-names>
</name>
<name>
<surname>Duffey</surname>
<given-names>S. S.</given-names>
</name>
</person-group> (<year>1992</year>). <article-title>Impact of oxidized plant phenolics on the nutritional quality of dietar protein to a noctuid herbivore, <italic>Spodoptera exigua</italic>
</article-title>. <source>J. Insect Physiol.</source> <volume>38</volume>, <fpage>277</fpage>&#x2013;<lpage>285</lpage>. <pub-id pub-id-type="doi">10.1016/0022-1910(92)90128-Z</pub-id>
</citation>
</ref>
<ref id="B41">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Felton</surname>
<given-names>G. W.</given-names>
</name>
<name>
<surname>Duffey</surname>
<given-names>S. S.</given-names>
</name>
</person-group> (<year>1991</year>). <article-title>Reassessment of the role of gut alkalinity and detergency in insect herbivory</article-title>. <source>J. Chem. Ecol.</source> <volume>17</volume>, <fpage>1821</fpage>&#x2013;<lpage>1836</lpage>. <pub-id pub-id-type="doi">10.1007/BF00993731</pub-id>
</citation>
</ref>
<ref id="B42">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Fiesel</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Ehrmann</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Gessner</surname>
<given-names>D. K.</given-names>
</name>
<name>
<surname>Most</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Eder</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Effects of polyphenol-rich plant products from grape or hop as feed supplements on iron, zinc, and copper status in piglets</article-title>. <source>Arch. Anim. Nutr.</source> <volume>69</volume>, <fpage>276</fpage>&#x2013;<lpage>284</lpage>. <pub-id pub-id-type="doi">10.1080/1745039X.2015.1057065</pub-id>
</citation>
</ref>
<ref id="B43">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Giron</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Dubreuil</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Bennett</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Dedeine</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Dicke</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Erb</surname>
<given-names>M.</given-names>
</name>
<etal/>
</person-group> (<year>2018</year>). <article-title>Promises and challenges in insect-plant interactions</article-title>. <source>Entomol. Exp. Appl.</source> <volume>166</volume>, <fpage>319</fpage>&#x2013;<lpage>343</lpage>. <pub-id pub-id-type="doi">10.1111/eea.12679</pub-id>
</citation>
</ref>
<ref id="B44">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Grabherr</surname>
<given-names>M. G.</given-names>
</name>
<name>
<surname>Haas</surname>
<given-names>B. J.</given-names>
</name>
<name>
<surname>Yassour</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Levin</surname>
<given-names>J. Z.</given-names>
</name>
<name>
<surname>Thompson</surname>
<given-names>D. A.</given-names>
</name>
<name>
<surname>Amit</surname>
<given-names>I.</given-names>
</name>
<etal/>
</person-group> (<year>2011</year>). <article-title>Full-length transcriptome assembly from RNA-Seq data without a reference genome</article-title>. <source>Nat. Biotechnol.</source> <volume>29</volume>, <fpage>644</fpage>&#x2013;<lpage>652</lpage>. <pub-id pub-id-type="doi">10.1038/nbt.1883</pub-id>
</citation>
</ref>
<ref id="B45">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Grimaldi</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Engel</surname>
<given-names>M. S.</given-names>
</name>
</person-group> (<year>2005</year>). <source>Evolution of the insects</source>. <publisher-loc>New York, Melbourne</publisher-loc>: <publisher-name>Cambridge University Press</publisher-name>.</citation>
</ref>
<ref id="B46">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Harvey</surname>
<given-names>J. A.</given-names>
</name>
<name>
<surname>Van Dam</surname>
<given-names>N. M.</given-names>
</name>
<name>
<surname>Witjes</surname>
<given-names>L. M.</given-names>
</name>
<name>
<surname>Soler</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Gols</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Effects of dietary nicotine on the development of an insect herbivore, its parasitoid and secondary hyperparasitoid over four trophic levels</article-title>. <source>Ecol. Entomol.</source> <volume>32</volume>, <fpage>15</fpage>&#x2013;<lpage>23</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2311.2006.00838.x</pub-id>
</citation>
</ref>
<ref id="B47">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Haslam</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Vegetable tannins &#x2013; lessons of a phytochemical lifetime</article-title>. <source>Phytochemy</source> <volume>68</volume>, <fpage>2713</fpage>&#x2013;<lpage>2721</lpage>. <pub-id pub-id-type="doi">10.1016/j.phytochem.2007.09.009</pub-id>
</citation>
</ref>
<ref id="B48">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Haukioja</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Ossipov</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Lempa</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2002</year>). <article-title>Interactive effects of leaf maturation and phenolics on consumption and growth of a geometrid moth</article-title>. <source>Entomol. Exp. Appl.</source> <volume>104</volume>, <fpage>125</fpage>&#x2013;<lpage>136</lpage>. <pub-id pub-id-type="doi">10.1046/j.1570-7458.2002.00999.x</pub-id>
</citation>
</ref>
<ref id="B49">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Hern&#xe1;ndez-Ortiz</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Guill&#xe9;n-Aguilar</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>L&#xf3;pez</surname>
<given-names>L.</given-names>
</name>
</person-group> (<year>2010</year>). &#x201c;<article-title>Taxonom&#xed;a e identificaci&#xf3;n de moscas de la fruta de importancia econ&#xf3;mica en Am&#xe9;rica</article-title>,&#x201d; in <source>Moscas de la Fruta: fundamentos y Procedimientos para su Manejo</source>. Editors <person-group person-group-type="editor">
<name>
<surname>Montoya</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Toledo</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Hern&#xe1;ndez</surname>
<given-names>E.</given-names>
</name>
</person-group> (<publisher-loc>M&#xe9;xico</publisher-loc>: <publisher-name>S and G</publisher-name>), <fpage>49</fpage>&#x2013;<lpage>79</lpage>. <comment>D. F</comment>.</citation>
</ref>
<ref id="B50">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hoback</surname>
<given-names>W. W.</given-names>
</name>
<name>
<surname>Stanley</surname>
<given-names>D. W.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>Insects in hypoxia</article-title>. <source>J. Insect Physiol.</source> <volume>47</volume>, <fpage>533</fpage>&#x2013;<lpage>542</lpage>. <pub-id pub-id-type="doi">10.1016/S0022-1910(00)00153-0</pub-id>
</citation>
</ref>
<ref id="B51">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Jeffries</surname>
<given-names>K. A.</given-names>
</name>
<name>
<surname>Dempsey</surname>
<given-names>D. R.</given-names>
</name>
<name>
<surname>Behari</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Anderson</surname>
<given-names>R. L.</given-names>
</name>
<name>
<surname>Merkler</surname>
<given-names>D. J.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>
<italic>Drosophila melanogaster</italic> as a model system to study long-chain fatty acid amide metabolism</article-title>. <source>FEBS Lett.</source> <volume>588</volume>, <fpage>1596</fpage>&#x2013;<lpage>1602</lpage>. <pub-id pub-id-type="doi">10.1016/j.febslet.2014.02.051</pub-id>
</citation>
</ref>
<ref id="B52">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Karp</surname>
<given-names>P. D.</given-names>
</name>
<name>
<surname>Paley</surname>
<given-names>S. M.</given-names>
</name>
<name>
<surname>Krummenacker</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Latendresse</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Dale</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Lee</surname>
<given-names>T. J.</given-names>
</name>
<etal/>
</person-group> (<year>2010</year>). <article-title>Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology</article-title>. <source>Brief. Bioinform.</source> <volume>11</volume>, <fpage>40</fpage>&#x2013;<lpage>79</lpage>. <pub-id pub-id-type="doi">10.1093/bib/bbp043</pub-id>
</citation>
</ref>
<ref id="B53">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Kassambara</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Ggpubr: &#x27;ggplot2&#x27; based publication ready plots</article-title>. <comment>R Package Version 0.4.0. Available at: <ext-link ext-link-type="uri" xlink:href="https://CRAN.R-project.org/package=ggpubr">https://CRAN.R-project.org/package&#x3d;ggpubr</ext-link>.</comment>
</citation>
</ref>
<ref id="B54">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Kolde</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Pheatmap: pretty heatmaps</article-title>. <comment>R Package Version 1.0.12. Available at: <ext-link ext-link-type="uri" xlink:href="https://CRAN.R-project.org/package=pheatmap">https://CRAN.R-project.org/package&#x3d;pheatmap</ext-link>.</comment>
</citation>
</ref>
<ref id="B55">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Krueger</surname>
<given-names>F.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>Trim Galore: a wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries</article-title>. <comment>Available at: <ext-link ext-link-type="uri" xlink:href="http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/">http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/</ext-link>.</comment>
</citation>
</ref>
<ref id="B56">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lauter</surname>
<given-names>W. M.</given-names>
</name>
<name>
<surname>Foote</surname>
<given-names>P. A.</given-names>
</name>
</person-group> (<year>1955</year>). <article-title>Investigation of the toxic principles of <italic>Hippomane mancinella</italic> L. II. Preliminary isolation of a toxic principle of the fruit</article-title>. <source>J. Am. Pharm. Assoc.</source> <volume>44</volume>, <fpage>361</fpage>&#x2013;<lpage>363</lpage>. <pub-id pub-id-type="doi">10.1002/jps.3030440616</pub-id>
</citation>
</ref>
<ref id="B57">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lechner</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Findei&#xdf;</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Steiner</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Marz</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Stadler</surname>
<given-names>P. F.</given-names>
</name>
<name>
<surname>Prohaska</surname>
<given-names>S. J.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Proteinortho: detection of (co-) orthologs in large-scale analysis</article-title>. <source>BMC bioinform</source> <volume>12</volume>, <fpage>124</fpage>&#x2013;<lpage>129</lpage>. <pub-id pub-id-type="doi">10.1186/1471-2105-12-124</pub-id>
</citation>
</ref>
<ref id="B58">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lee</surname>
<given-names>J. R.</given-names>
</name>
<name>
<surname>Urban</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Garvey</surname>
<given-names>C. F.</given-names>
</name>
<name>
<surname>Freeman</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>Regulated intracellular ligand transport and proteolysis control EGF signal activation in <italic>Drosophila</italic>
</article-title>. <source>Cell</source> <volume>107</volume>, <fpage>161</fpage>&#x2013;<lpage>171</lpage>. <pub-id pub-id-type="doi">10.1016/S0092-8674(01)00526-8</pub-id>
</citation>
</ref>
<ref id="B59">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lemelin</surname>
<given-names>R. H.</given-names>
</name>
<name>
<surname>Harper</surname>
<given-names>R. W.</given-names>
</name>
<name>
<surname>Dampier</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Bowles</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Balika</surname>
<given-names>D.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Humans, insects, and their interaction: a multi-faceted analysis</article-title>. <source>Anim. Sci. J.</source> <volume>5</volume>, <fpage>65</fpage>&#x2013;<lpage>79</lpage>. <comment>Available at: <ext-link ext-link-type="uri" xlink:href="https://ro.uow.edu.au/asj/vol5/iss1/5">https://ro.uow.edu.au/asj/vol5/iss1/5</ext-link>.</comment>
</citation>
</ref>
<ref id="B60">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Godzik</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2006</year>). <article-title>Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences</article-title>. <source>Bioinform</source> <volume>22</volume>, <fpage>1658</fpage>&#x2013;<lpage>1659</lpage>. <pub-id pub-id-type="doi">10.1093/bioinformatics/btl158</pub-id>
</citation>
</ref>
<ref id="B61">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Li</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Schuler</surname>
<given-names>M. A.</given-names>
</name>
<name>
<surname>Berenbaum</surname>
<given-names>M. R.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Molecular mechanisms of metabolic resistance to synthetic and natural xenobiotics</article-title>. <source>Annu. Rev. Entomol.</source> <volume>52</volume>, <fpage>231</fpage>&#x2013;<lpage>253</lpage>. <pub-id pub-id-type="doi">10.1146/annurev.ento.51.110104.151104</pub-id>
</citation>
</ref>
<ref id="B62">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lin</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Smagghe</surname>
<given-names>G.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>Roles of the insulin signaling pathway in insect development and organ growth</article-title>. <source>Peptides</source> <volume>122</volume>, <fpage>169923</fpage>. <pub-id pub-id-type="doi">10.1016/j.peptides.2018.02.001</pub-id>
</citation>
</ref>
<ref id="B63">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Liquido</surname>
<given-names>N. J.</given-names>
</name>
<name>
<surname>McQuate</surname>
<given-names>G. T.</given-names>
</name>
<name>
<surname>Suiter</surname>
<given-names>K. A.</given-names>
</name>
<name>
<surname>Norrbom</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Yee</surname>
<given-names>W. L.</given-names>
</name>
<name>
<surname>Chang</surname>
<given-names>C. L.</given-names>
</name>
</person-group> (<year>2019</year>). &#x201c;<article-title>Compendium of fruit fly host plant information. The USDA primary reference in establishing fruit fly regulated host plants</article-title>,&#x201d; in <source>Areawide management of fruit fly pests</source>. Editors <person-group person-group-type="editor">
<name>
<surname>P&#xe9;rez-Staples</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>D&#xed;az-Fleischer</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Montoya</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Vera</surname>
<given-names>M. T.</given-names>
</name>
</person-group> (<publisher-loc>Boca Raton, FL</publisher-loc>: <publisher-name>CRC Press</publisher-name>), <fpage>363</fpage>&#x2013;<lpage>368</lpage>.</citation>
</ref>
<ref id="B64">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Love</surname>
<given-names>M. I.</given-names>
</name>
<name>
<surname>Huber</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Anders</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2</article-title>. <source>Genome Biol.</source> <volume>15</volume>, <fpage>550</fpage>. <pub-id pub-id-type="doi">10.1186/s13059-014-0550-8</pub-id>
</citation>
</ref>
<ref id="B65">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lu</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Yang</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Xie</surname>
<given-names>W.</given-names>
</name>
<etal/>
</person-group> (<year>2014</year>). <article-title>Insect prophenoloxidase: the view beyond immunity</article-title>. <source>Front. Physiol.</source> <volume>5</volume>, <fpage>252</fpage>. <pub-id pub-id-type="doi">10.3389/fphys.2014.00252</pub-id>
</citation>
</ref>
<ref id="B66">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Maechler</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Rousseeuw</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Struyf</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Hubert</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Hornik</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2021</year>). <source>Cluster analysis basics and extensions</source>. <comment>R Package Version 2.1.2. Available at: <ext-link ext-link-type="uri" xlink:href="https://CRAN.R-project.org/package=cluster">https://CRAN.R-project.org/package&#x3d;cluster</ext-link>.</comment>
</citation>
</ref>
<ref id="B67">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Margiotta</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Membrane fusion and SNAREs: interaction with ras proteins</article-title>. <source>Int. J. Mol. Sci.</source> <volume>23</volume>, <fpage>8067</fpage>. <pub-id pub-id-type="doi">10.3390/ijms23158067</pub-id>
</citation>
</ref>
<ref id="B68">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Marini</surname>
<given-names>F.</given-names>
</name>
<name>
<surname>Binder</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2019</year>). <article-title>pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components</article-title>. <source>BMC Bioinforma.</source> <volume>20</volume>, <fpage>331</fpage>. <pub-id pub-id-type="doi">10.1186/s12859-019-2879-1</pub-id>
</citation>
</ref>
<ref id="B69">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Martin</surname>
<given-names>G. G.</given-names>
</name>
<name>
<surname>Hose</surname>
<given-names>J. E.</given-names>
</name>
</person-group> (<year>1995</year>). &#x201c;<article-title>Circulation, the blood and disease</article-title>,&#x201d; in <source>Biology of the lobster, <italic>Homarus americanus</italic>
</source>. Editor <person-group person-group-type="editor">
<name>
<surname>Factor</surname>
<given-names>J. R.</given-names>
</name>
</person-group> (<publisher-loc>San Diego</publisher-loc>: <publisher-name>Academic Press</publisher-name>), <fpage>465</fpage>&#x2013;<lpage>495</lpage>.</citation>
</ref>
<ref id="B70">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Martin</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Cutadapt removes adapter sequences from high-throughput sequencing reads</article-title>. <source>EMBnet J.</source> <volume>17</volume>, <fpage>10</fpage>&#x2013;<lpage>12</lpage>. <pub-id pub-id-type="doi">10.14806/ej.17.1.200</pub-id>
</citation>
</ref>
<ref id="B71">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McDonald</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Mila</surname>
<given-names>I.</given-names>
</name>
<name>
<surname>Scalbert</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>1996</year>). <article-title>Precipitation of metal ions by plant polyphenols: optimal conditions and origin of precipitation</article-title>. <source>J. Agric. Food Chem.</source> <volume>44</volume>, <fpage>599</fpage>&#x2013;<lpage>606</lpage>. <pub-id pub-id-type="doi">10.1021/jf950459q</pub-id>
</citation>
</ref>
<ref id="B72">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>McDougall</surname>
<given-names>G. J.</given-names>
</name>
<name>
<surname>Stewart</surname>
<given-names>D.</given-names>
</name>
</person-group> (<year>2005</year>). <article-title>The inhibitory effects of berry polyphenols on digestive enzymes</article-title>. <source>BioFactors</source> <volume>23</volume>, <fpage>189</fpage>&#x2013;<lpage>195</lpage>. <pub-id pub-id-type="doi">10.1002/biof.5520230403</pub-id>
</citation>
</ref>
<ref id="B73">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Mengual</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Kerr</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Norrbom</surname>
<given-names>A. L.</given-names>
</name>
<name>
<surname>Barr</surname>
<given-names>N. B.</given-names>
</name>
<name>
<surname>Lewis</surname>
<given-names>M. L.</given-names>
</name>
<name>
<surname>Stapelfeldt</surname>
<given-names>A. M.</given-names>
</name>
<etal/>
</person-group> (<year>2017</year>). <article-title>Phylogenetic relationships of the tribe Toxotrypanini (Diptera: Tephritidae) based on molecular characters</article-title>. <source>Molec. Phyl. Evol.</source> <volume>113</volume>, <fpage>84</fpage>&#x2013;<lpage>112</lpage>. <pub-id pub-id-type="doi">10.1016/j.ympev.2017.05.011</pub-id>
</citation>
</ref>
<ref id="B74">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Milton-Bache</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Wickham</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Magrittr: a forward-pipe operator for R. R package version 2.0.1</article-title>. <comment>Available at: <ext-link ext-link-type="uri" xlink:href="https://CRAN.R-project.org/package=magrittr">https://CRAN.R-project.org/package&#x3d;magrittr</ext-link>.</comment>
</citation>
</ref>
<ref id="B75">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Norrbom</surname>
<given-names>A. L.</given-names>
</name>
</person-group> (<year>2010</year>). &#x201c;<article-title>Tephritidae (fruit flies, moscas de Frutas)</article-title>,&#x201d; in <source>Manual of central American Diptera</source>. Editors <person-group person-group-type="editor">
<name>
<surname>Brown</surname>
<given-names>B. V.</given-names>
</name>
<name>
<surname>Borkent</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Cumming</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Wood</surname>
<given-names>D. M.</given-names>
</name>
<name>
<surname>E Woodley</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Zumbado</surname>
<given-names>M. A.</given-names>
</name>
</person-group> (<publisher-loc>Ottawa</publisher-loc>: <publisher-name>NRC Research Press</publisher-name>), <fpage>909</fpage>&#x2013;<lpage>954</lpage>.</citation>
</ref>
<ref id="B76">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ochoa-S&#xe1;nchez</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Cerqueda-Garc&#xed;a</surname>
<given-names>D.</given-names>
</name>
<name>
<surname>Moya</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Ibarra-Laclette</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Alt&#xfa;zar-Molina</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Desgarennes</surname>
<given-names>D.</given-names>
</name>
<etal/>
</person-group> (<year>2022</year>). <article-title>Bitter friends are not always toxic: the loss of acetic acid bacteria and the absence of <italic>Komagataeibacter</italic> in the gut microbiota of the polyphagous fly <italic>Anastrepha ludens</italic> could inhibit its development in <italic>Psidium guajava</italic> in contrast to <italic>A. striata</italic> and <italic>A. fraterculus</italic> that flourish in this host</article-title>. <source>Front. Microbiol.</source> <volume>13</volume>, <fpage>979817</fpage>. <pub-id pub-id-type="doi">10.3389/fmicb.2022.979817</pub-id>
</citation>
</ref>
<ref id="B77">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Oppert</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Martynov</surname>
<given-names>A. G.</given-names>
</name>
<name>
<surname>Elpidina</surname>
<given-names>E. N.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>
<italic>Bacillus thuringiensis</italic> Cry3Aa protoxin intoxication of <italic>Tenebrio molitor</italic> induces widespread changes in the expression of serine peptidase transcripts</article-title>. <source>Comp. Biochem. Physiol. Part D. Genomics Proteomics.</source> <volume>7</volume>, <fpage>233</fpage>&#x2013;<lpage>242</lpage>. <pub-id pub-id-type="doi">10.1016/j.cbd.2012.03.005</pub-id>
</citation>
</ref>
<ref id="B78">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pascacio-Villaf&#xe1;n</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Guill&#xe9;n</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Williams</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2018</year>). <article-title>Effects of larval density and support substrate in liquid diet on productivity and quality of artificially reared <italic>Anastrepha ludens</italic> (Diptera: Tephritidae)</article-title>. <source>J. Econ. Entomol.</source> <volume>111</volume>, <fpage>2281</fpage>&#x2013;<lpage>2287</lpage>. <pub-id pub-id-type="doi">10.1093/jee/toy221</pub-id>
</citation>
</ref>
<ref id="B79">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pascacio-Villaf&#xe1;n</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Lapointe</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Williams</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Sivinski</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Niedz</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Mixture-amount design and response surface modeling to assess the effects of flavonoids and phenolic acids on developmental performance of <italic>Anastrepha ludens</italic>
</article-title>. <source>J. Chem. Ecol.</source> <volume>40</volume>, <fpage>297</fpage>&#x2013;<lpage>306</lpage>. <pub-id pub-id-type="doi">10.1007/s10886-014-0404-6</pub-id>
</citation>
</ref>
<ref id="B80">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pascacio-Villaf&#xe1;n</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Williams</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Birke</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Aluja</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2016</year>). <article-title>Nutritional and non-nutritional food components modulate phenotypic variation but not physiological trade-offs in an insect</article-title>. <source>Sci. Rep.</source> <volume>6</volume>, <fpage>29413</fpage>. <pub-id pub-id-type="doi">10.1038/srep29413</pub-id>
</citation>
</ref>
<ref id="B81">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Patro</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Duggal</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Love</surname>
<given-names>M. I.</given-names>
</name>
<name>
<surname>Irizarry</surname>
<given-names>R. A.</given-names>
</name>
<name>
<surname>Kingsford</surname>
<given-names>C.</given-names>
</name>
</person-group> (<year>2017</year>). <article-title>Salmon provides fast and bias-aware quantification of transcript expression</article-title>. <source>Nat. Methods.</source> <volume>14</volume>, <fpage>417</fpage>&#x2013;<lpage>419</lpage>. <pub-id pub-id-type="doi">10.1038/nmeth.4197</pub-id>
</citation>
</ref>
<ref id="B82">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Perdomo-Morales</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Montero-Alejo</surname>
<given-names>V.</given-names>
</name>
<name>
<surname>Perera</surname>
<given-names>E.</given-names>
</name>
<name>
<surname>Pardo-Ruiz</surname>
<given-names>Z.</given-names>
</name>
<name>
<surname>Alonso-Jim&#xe9;nez</surname>
<given-names>E.</given-names>
</name>
</person-group> (<year>2007</year>). <article-title>Phenoloxidase activity in the hemolymph of the spiny lobster <italic>Panulirus argus</italic>
</article-title>. <source>Fish. Shellfish Immunol.</source> <volume>23</volume>, <fpage>1187</fpage>&#x2013;<lpage>1195</lpage>. <pub-id pub-id-type="doi">10.1016/j.fsi.2007.04.001</pub-id>
</citation>
</ref>
<ref id="B83">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pryor</surname>
<given-names>M. G. M.</given-names>
</name>
<name>
<surname>Russell</surname>
<given-names>P. B.</given-names>
</name>
<name>
<surname>Todd</surname>
<given-names>A. R.</given-names>
</name>
</person-group> (<year>1947</year>). <article-title>Phenolic substances concerned in hardening the insect cuticle</article-title>. <source>Nature</source> <volume>159</volume>, <fpage>399</fpage>&#x2013;<lpage>400</lpage>. <pub-id pub-id-type="doi">10.1038/159399a0</pub-id>
</citation>
</ref>
<ref id="B84">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Punia</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Singh Chauhan</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Kaur</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Kaur Sohal</surname>
<given-names>S.</given-names>
</name>
</person-group> (<year>2020</year>). <article-title>Effect of ellagic acid on the larvae of <italic>Spodoptera litura</italic> (Lepidoptera: Noctuidae) and its parasitoid <italic>Bracon hebetor</italic> (Hymenoptera: braconidae)</article-title>. <source>J. Asia-Pac. Entomol.</source> <volume>23</volume>, <fpage>660</fpage>&#x2013;<lpage>665</lpage>. <pub-id pub-id-type="doi">10.1016/j.aspen.2020.05.008</pub-id>
</citation>
</ref>
<ref id="B85">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rao</surname>
<given-names>K. V.</given-names>
</name>
</person-group> (<year>1974</year>). <article-title>Toxic principles of <italic>Hippomane mancinella</italic> I</article-title>. <source>Planta Med.</source> <volume>25</volume>, <fpage>166</fpage>&#x2013;<lpage>171</lpage>. <pub-id pub-id-type="doi">10.1055/s-0028-1097927</pub-id>
</citation>
</ref>
<ref id="B86">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rao</surname>
<given-names>K. V.</given-names>
</name>
</person-group> (<year>1977</year>). <article-title>Toxic principles of <italic>Hippomane mancinella.</italic> II structure of Hippomanin A. <italic>Lloydia</italic>
</article-title>. <source>Lloydia</source> <volume>40</volume>, <fpage>169</fpage>&#x2013;<lpage>172</lpage>. <comment>Available at: <ext-link ext-link-type="uri" xlink:href="https://pubmed.ncbi.nlm.nih.gov/875644/">https://pubmed.ncbi.nlm.nih.gov/875644/</ext-link>.</comment>
</citation>
</ref>
<ref id="B87">
<citation citation-type="book">
<collab>R Development Core Team</collab> (<year>2021</year>). <source>R: a language and environment for statistical computing</source>. <publisher-loc>Vienna, Austria</publisher-loc>: <publisher-name>R Foundation for Statistical Computing</publisher-name>.</citation>
</ref>
<ref id="B88">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Salminen</surname>
<given-names>J. P.</given-names>
</name>
<name>
<surname>Karonen</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Chemical ecology of tannins and other phenolics: we need a change in approach</article-title>. <source>Funct. Ecol.</source> <volume>25</volume>, <fpage>325</fpage>&#x2013;<lpage>338</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2435.2010.01826.x</pub-id>
</citation>
</ref>
<ref id="B89">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Salminen</surname>
<given-names>J. P.</given-names>
</name>
<name>
<surname>Roslin</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Karonen</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Sinkkonen</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Pihlaja</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Pulkkinen</surname>
<given-names>P.</given-names>
</name>
</person-group> (<year>2004</year>). <article-title>Seasonal variation in the content of hydrolyzable tannins, flavonoid glycosides, and proanthocyanidins in oak leaves</article-title>. <source>J. Chem. Ecol.</source> <volume>30</volume>, <fpage>1693</fpage>&#x2013;<lpage>1711</lpage>. <pub-id pub-id-type="doi">10.1023/b:joec.0000042396.40756.b7</pub-id>
</citation>
</ref>
<ref id="B90">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Schaeffer</surname>
<given-names>H. J.</given-names>
</name>
<name>
<surname>Lauter</surname>
<given-names>W. M.</given-names>
</name>
<name>
<surname>Foote</surname>
<given-names>P. A.</given-names>
</name>
</person-group> (<year>1954</year>). <article-title>A preliminary phytochemical study of <italic>Hippomane mancinella</italic> L</article-title>. <source>J. Am. Pharm. Assoc.</source> <volume>43</volume>, <fpage>43</fpage>&#x2013;<lpage>45</lpage>. <pub-id pub-id-type="doi">10.1002/jps.3030430115</pub-id>
</citation>
</ref>
<ref id="B91">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Schopf</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>1986</year>). <article-title>The effect of secondary needle compounds on the development of phytophagous insects</article-title>. <source>For. Ecol. Manag.</source> <volume>15</volume>, <fpage>55</fpage>&#x2013;<lpage>64</lpage>. <pub-id pub-id-type="doi">10.1016/0378-1127(86)90089-7</pub-id>
</citation>
</ref>
<ref id="B92">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Scudder</surname>
<given-names>G. G. E.</given-names>
</name>
</person-group> (<year>2017</year>). &#x201c;<article-title>The importance of insects</article-title>,&#x201d;. <source>Insect biodiversity: science and society</source>. Editors <person-group person-group-type="editor">
<name>
<surname>Foottit</surname>
<given-names>R. G.</given-names>
</name>
<name>
<surname>Adler</surname>
<given-names>P. H.</given-names>
</name>
</person-group> (<publisher-loc>Chichester, UK</publisher-loc>: <publisher-name>Wiley-Blackwell</publisher-name>), <fpage>9</fpage>&#x2013;<lpage>43</lpage>.</citation>
</ref>
<ref id="B93">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sharkey</surname>
<given-names>K. A.</given-names>
</name>
<name>
<surname>Darmani</surname>
<given-names>N. A.</given-names>
</name>
<name>
<surname>Parker</surname>
<given-names>L. A.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Regulation of nausea and vomiting by cannabinoids and the endocannabinoid system</article-title>. <source>Eur. J. Pharmacol.</source> <volume>722</volume>, <fpage>134</fpage>&#x2013;<lpage>146</lpage>. <pub-id pub-id-type="doi">10.1016/j.ejphar.2013.09.068</pub-id>
</citation>
</ref>
<ref id="B94">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Shu</surname>
<given-names>B.</given-names>
</name>
<name>
<surname>Zou</surname>
<given-names>Y.</given-names>
</name>
<name>
<surname>Yu</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>W.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Cao</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2021</year>). <article-title>Growth inhibition of <italic>Spodoptera frugiperda</italic> larvae by camptothecin correlates with alteration of the structures and gene expression profiles of the midgut</article-title>. <source>BMC Genom</source> <volume>22</volume>, <fpage>391</fpage>&#x2013;<lpage>154</lpage>. <pub-id pub-id-type="doi">10.1186/s12864-021-07726-8</pub-id>
</citation>
</ref>
<ref id="B95">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Slowikowski</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2021</year>). <source>ggrepel: automatically position non-overlapping text labels with &#x27;ggplot2</source>. <comment>R package version 0.9.1. Available at: <ext-link ext-link-type="uri" xlink:href="https://CRAN.R-project.org/package=ggrepel">https://CRAN.R-project.org/package&#x3d;ggrepel</ext-link>.</comment>
</citation>
</ref>
<ref id="B96">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Soares</surname>
<given-names>T. S.</given-names>
</name>
<name>
<surname>Watanabe</surname>
<given-names>R. M. O.</given-names>
</name>
<name>
<surname>Lemos</surname>
<given-names>F. J. A.</given-names>
</name>
<name>
<surname>Tanaka</surname>
<given-names>A. S.</given-names>
</name>
</person-group> (<year>2011</year>). <article-title>Molecular characterization of genes encoding trypsin-like enzymes from <italic>Aedes aegypti</italic> larvae and identification of digestive enzymes</article-title>. <source>Gene</source> <volume>489</volume>, <fpage>70</fpage>&#x2013;<lpage>75</lpage>. <pub-id pub-id-type="doi">10.1016/j.gene.2011.08.018</pub-id>
</citation>
</ref>
<ref id="B97">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Spalinger</surname>
<given-names>D. E.</given-names>
</name>
<name>
<surname>Collins</surname>
<given-names>W. B.</given-names>
</name>
<name>
<surname>Hanley</surname>
<given-names>T. A.</given-names>
</name>
<name>
<surname>Cassara</surname>
<given-names>N. E.</given-names>
</name>
<name>
<surname>Carnahan</surname>
<given-names>A. M.</given-names>
</name>
</person-group> (<year>2010</year>). <article-title>The impact of tannins on protein, dry matter, and energy digestion in moose (<italic>Alces alces</italic>)</article-title>. <source>Can. J. Zool.</source> <volume>88</volume>, <fpage>977</fpage>&#x2013;<lpage>987</lpage>. <pub-id pub-id-type="doi">10.1139/z10-064</pub-id>
</citation>
</ref>
<ref id="B98">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Spit</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zels</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Dillen</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Holtof</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Wynant</surname>
<given-names>N.</given-names>
</name>
<name>
<surname>Vanden Broeck</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2014</year>). <article-title>Effects of different dietary conditions on the expression of trypsin- and chymotrypsin-like protease genes in the digestive system of the Migratory Locust, <italic>Locusta migratoria</italic>
</article-title>. <source>Insect biochem. Mol. Biol.</source> <volume>48</volume>, <fpage>100</fpage>&#x2013;<lpage>109</lpage>. <pub-id pub-id-type="doi">10.1016/j.ibmb.2014.03.002</pub-id>
</citation>
</ref>
<ref id="B99">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Thitz</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Meht&#xe4;talo</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>V&#xe4;lim&#xe4;ki</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Randriamanana</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>L&#xe4;nnenp&#xe4;&#xe4;</surname>
<given-names>M.</given-names>
</name>
<name>
<surname>Hagerman</surname>
<given-names>A. E.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Phytochemical shift from condensed tannins to flavonoids in transgenic <italic>Betula pendula</italic> decreases consumption and growth but improves growth efficiency of <italic>Epirrita autumnata</italic> larvae</article-title>. <source>J. Chem. Ecol.</source> <volume>46</volume>, <fpage>217</fpage>&#x2013;<lpage>231</lpage>. <pub-id pub-id-type="doi">10.1007/s10886-019-01134-9</pub-id>
</citation>
</ref>
<ref id="B100">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tortoriello</surname>
<given-names>G.</given-names>
</name>
<name>
<surname>Rhodes</surname>
<given-names>B. P.</given-names>
</name>
<name>
<surname>Takacs</surname>
<given-names>S. M.</given-names>
</name>
<name>
<surname>Stuart</surname>
<given-names>J. M.</given-names>
</name>
<name>
<surname>Basnet</surname>
<given-names>A.</given-names>
</name>
<name>
<surname>Raboune</surname>
<given-names>S.</given-names>
</name>
<etal/>
</person-group> (<year>2013</year>). <article-title>Targeted lipidomics in <italic>Drosophila melanogaste</italic>r identifies novel 2-monoacylglycerols and N-acyl amides</article-title>. <source>PLoS ONE</source> <volume>8</volume>, <fpage>e67865</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0067865</pub-id>
</citation>
</ref>
<ref id="B101">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Urban</surname>
<given-names>S. A.</given-names>
</name>
<name>
<surname>Lee</surname>
<given-names>J. R.</given-names>
</name>
<name>
<surname>Freeman</surname>
<given-names>M.</given-names>
</name>
</person-group> (<year>2002</year>). <article-title>Family of rhomboid intramembrane proteases activates all <italic>Drosophila</italic> membrane-tethered EGF ligands</article-title>. <source>EMBO J.</source> <volume>21</volume>, <fpage>4277</fpage>&#x2013;<lpage>4286</lpage>. <pub-id pub-id-type="doi">10.1093/emboj/cdf434</pub-id>
</citation>
</ref>
<ref id="B102">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wang</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Zhao</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Luo</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>C.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>L.</given-names>
</name>
<etal/>
</person-group> (<year>2020</year>). <article-title>Identification and functional analysis of diet-responsive genes in <italic>Spodoptera litura</italic> (Fabricius)</article-title>. <source>Res. Sq</source>. <pub-id pub-id-type="doi">10.21203/rs.2.24664/v2</pub-id>
</citation>
</ref>
<ref id="B103">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Wei</surname>
<given-names>T.</given-names>
</name>
<name>
<surname>Simko</surname>
<given-names>V.</given-names>
</name>
</person-group> (<year>2021</year>). <source>R package &#x27;corrplot&#x27;: visualization of a correlation matrix (version 0.91)</source>. <comment>Available at: <ext-link ext-link-type="uri" xlink:href="https://github.com/taiyun/corrplot">https://github.com/taiyun/corrplot</ext-link>.</comment>
</citation>
</ref>
<ref id="B104">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Weng</surname>
<given-names>J. K.</given-names>
</name>
<name>
<surname>Philippe</surname>
<given-names>R. N.</given-names>
</name>
<name>
<surname>Noel</surname>
<given-names>J. P.</given-names>
</name>
</person-group> (<year>2012</year>). <article-title>The rise of chemodiversity in plants</article-title>. <source>Sci</source> <volume>336</volume>, <fpage>1667</fpage>&#x2013;<lpage>1670</lpage>. <pub-id pub-id-type="doi">10.1126/science.1217411</pub-id>
</citation>
</ref>
<ref id="B105">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>White</surname>
<given-names>I. M.</given-names>
</name>
<name>
<surname>Elson-Harris</surname>
<given-names>M. M.</given-names>
</name>
</person-group> (<year>1992</year>). <source>Fruit flies of economic significance: their identification and bionomics</source>. <publisher-loc>Wallingford</publisher-loc>: <publisher-name>CAB International</publisher-name>.</citation>
</ref>
<ref id="B106">
<citation citation-type="book">
<person-group person-group-type="author">
<name>
<surname>Wickham</surname>
<given-names>H.</given-names>
</name>
</person-group> (<year>2016</year>). <source>ggplot2: elegant graphics for data analysis</source>. <publisher-loc>New York</publisher-loc>: <publisher-name>Springer-Verlag</publisher-name>. <comment>Available at: <ext-link ext-link-type="uri" xlink:href="https://github.com/hadley/ggplot2">https://github.com/hadley/ggplot2</ext-link>.</comment>
</citation>
</ref>
<ref id="B107">
<citation citation-type="web">
<person-group person-group-type="author">
<name>
<surname>Wickham</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Fran&#xe7;ois</surname>
<given-names>R.</given-names>
</name>
<name>
<surname>Henry</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>M&#xfc;ller</surname>
<given-names>K.</given-names>
</name>
</person-group> (<year>2021</year>). <article-title>dplyr: a grammar of data manipulation</article-title>. <comment>R Package Version 1.0.7. Available at: <ext-link ext-link-type="uri" xlink:href="https://CRAN.R-project.org/package=dplyr">https://CRAN.R-project.org/package&#x3d;dplyr</ext-link>.</comment>
</citation>
</ref>
<ref id="B108">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Wu</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Shao</surname>
<given-names>Q.</given-names>
</name>
<name>
<surname>Clark</surname>
<given-names>K. D.</given-names>
</name>
<etal/>
</person-group> (<year>2015</year>). <article-title>Plant phenolics are detoxified by prophenoloxidase in the insect gut</article-title>. <source>Sci. Rep.</source> <volume>5</volume>, <fpage>16823</fpage>. <pub-id pub-id-type="doi">10.1038/srep16823</pub-id>
</citation>
</ref>
<ref id="B109">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zalucki</surname>
<given-names>M. P.</given-names>
</name>
<name>
<surname>Brower</surname>
<given-names>L. P.</given-names>
</name>
<name>
<surname>Alonso&#x2010;M</surname>
<given-names>A.</given-names>
</name>
</person-group> (<year>2001</year>). <article-title>Detrimental effects of latex and cardiac glycosides on survival and growth of first&#x2010;instar monarch butterfly larvae <italic>Danaus plexippus</italic> feeding on the sandhill milkweed <italic>Asclepias humistrata</italic>
</article-title>. <source>Ecol. Entomol.</source> <volume>26</volume>, <fpage>212</fpage>&#x2013;<lpage>224</lpage>. <pub-id pub-id-type="doi">10.1046/j.1365-2311.2001.00313.x</pub-id>
</citation>
</ref>
<ref id="B110">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhao</surname>
<given-names>P.</given-names>
</name>
<name>
<surname>Xue</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>L.</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>D.</given-names>
</name>
<etal/>
</person-group> (<year>2022</year>). <article-title>Silencing of cytorome P450 gene CYP321A1 effects tannin detoxification and metabolism in <italic>Spodoptera litura</italic>
</article-title>. <source>Int. J. Biol. Macromol.</source> <volume>194</volume>, <fpage>895</fpage>&#x2013;<lpage>902</lpage>. <pub-id pub-id-type="doi">10.1016/j.ijbiomac.2021.11.144</pub-id>
</citation>
</ref>
<ref id="B111">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zheng</surname>
<given-names>S.</given-names>
</name>
<name>
<surname>Luo</surname>
<given-names>J.</given-names>
</name>
<name>
<surname>Zhu</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Gao</surname>
<given-names>X.</given-names>
</name>
<name>
<surname>Hua</surname>
<given-names>H.</given-names>
</name>
<name>
<surname>Cui</surname>
<given-names>J.</given-names>
</name>
</person-group> (<year>2022</year>). <article-title>Transcriptomic analysis of salivary gland and proteomic analysis of oral secretion in <italic>Helicoverpa armigera</italic> under cotton plant leaves, gossypol, and tannin stresses</article-title>. <source>Genom</source> <volume>114</volume>, <fpage>110267</fpage>. <pub-id pub-id-type="doi">10.1016/j.ygeno.2022.01.004</pub-id>
</citation>
</ref>
<ref id="B112">
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhu-Salzman</surname>
<given-names>K.</given-names>
</name>
<name>
<surname>Zeng</surname>
<given-names>R.</given-names>
</name>
</person-group> (<year>2015</year>). <article-title>Insect response to plant defensive protease inhibitors</article-title>. <source>Annu. Rev. Entomol.</source> <volume>60</volume>, <fpage>233</fpage>&#x2013;<lpage>252</lpage>. <pub-id pub-id-type="doi">10.1146/annurev-ento-010814-020816</pub-id>
</citation>
</ref>
</ref-list>
</back>
</article>