ORIGINAL RESEARCH article
Front. Physiol.
Sec. Environmental, Aviation and Space Physiology
Systemic Elevation of Gut Derived p-Cresol During One Year in Space: Implications for Brain, Heart, Bone, Liver, and Microbiome in Astronauts
- MA
Michael A. Schmidt 1,2,3
- CM
Caleb M. Schmidt 1,4
- JC
Julian C. Schmidt 1
- CM
Cem Meydan 5,6,7
- EA
Ebrahim Afshinnekoo 8,7,9
- EG
Eliah G. Overbey 7,8,10
- JK
JangKeun Kim 8,7,9,11
- RS
Ruth Subhash Singh 12
- AB
Afshin Beheshti 13,14,15,16,17
- CE
Christopher E Mason 6,18,9,19,16,17
1. Sovaris Aerospace, LLC, Boulder, United States
2. Department of Medicine, Aerospace Medicine, University of Central Florida College of Medicine, Orlando, FL, United States
3. Center for Aerospace and Extreme Environments Medicine, UCF College of Medicine, Orlando, FL, United States
4. Department of Systems Engineering, Colorado State University, Fort Collins, CO, United States
5. Division of Hematology and Medical Oncology, Sanford I. Weill Department of Medicine, Weill Cornell Medicine, New York, NY, United States
6. Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, United States
7. The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, United States
8. Weill Cornell Medicine Department of Physiology and Biophysics, New York, United States
9. The WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, United States
10. Center for STEM, University of Austin (UATX), Austin, TX, United States
11. Weill Cornell Medicine Feil Family Brain and Mind Research Institute, New York, United States
12. Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, United States
13. Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, United States
14. Center for Space Biomedicine, Trivedi Institute for Space and Global Biomedicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States
15. McGowan Institute for Regenerative Medicine, Department of Surgery, University of Pittsburgh, Pittsburgh, PA, United States
16. Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States
17. Trivedi Institute for Space and Global Biomedicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States
18. The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, United States
19. The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, United States
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Abstract
Introduction We observed the elevation of p-cresol in the untargeted metabolome of the multiomics portion of the NASA Twins Study of One Year in Space. p-Cresol is a uremic and neurotoxin that is produced via the metabolism of dietary tyrosine by gut bacteria. Intestinally produced p-cresol is absorbed into systemic circulation where it exerts its adverse metabolic effects and drives phenotypic changes relevant to astronauts, including the brain, heart, bone, liver, kidney, and colon. Methods A pair of monozygotic twins were studied for 25 months, during which one subject spent 340 days aboard the International Space Station (ISS), while his identical twin remained on Earth. Molecular analyses included genome, epigenome, transcriptome, proteome, metabolome, immunome, and microbiome. Our metabolite feature extraction was focused on plasma p-cresol (p-cresyl sulfate [pCS] and p-cresol glucuronide [pCG]), along with associated biological dynamics that govern p-cresol production and metabolism. Results Significance was observed for pCG when comparing Post-flight vs. Inflight (adj p = 0.016). pCS values were significantly altered Post-flight vs. Inflight (adj p = 0.002) and Post-flight vs. Late-flight (adj p = 0.037). pCS values for Early-flight vs. Pre-flight approached significance (adj p = 0.08). In alignment with elevated plasma p-cresol values at certain stages of spaceflight, we found an increase in count-normalized abundance (raw reads) for the major p-cresol producer Clostridioides difficile in TW (Flight) vs. HR (Ground) for Post-flight, Inflight, and Overall (adj p = 0.014, adj p = 0.0006, and adj p = 2.02x10¯5, respectively). Concomitantly, we observed a significant increase in count-normalized abundance for another of the major p-cresol producers Olsenella uli in TW vs. HR for Post-flight, Inflight, and Overall (adj p = 0.0045, adj p = 0.00043, adj p = 0.0016, respectively), including Interaction for Inflight vs. Preflight (adj p = 0.028). Discussion We observed an elevation of p-cresol during one year in space, which may have significant implications for astronaut health and performance. Molecular findings and p-cresol countermeasure candidates are discussed. We also explore the process from untargeted molecular feature extraction to description of biological meaning, to new hypothesis generation, to plausible countermeasure development for human spaceflight.
Summary
Keywords
microbiome, multiomics, NASA Twins Study, p-cresol, precision medicine, spaceflight
Received
11 May 2026
Accepted
04 August 2026
Copyright
© 2026 Schmidt, Schmidt, Schmidt, Meydan, Afshinnekoo, Overbey, Kim, Singh, Beheshti and Mason. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Michael A. Schmidt
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