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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2019.01807</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Root Tropisms: Investigations on Earth and in Space to Unravel Plant Growth Direction</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Muthert</surname>
<given-names>Lucius Wilhelminus Franciscus</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/713509"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Izzo</surname>
<given-names>Luigi Gennaro</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/575691"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>van Zanten</surname>
<given-names>Martijn</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/43044"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Aronne</surname>
<given-names>Giovanna</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/349198"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Agricultural Sciences, University of Naples Federico II</institution>, <addr-line>Naples</addr-line>, <country>Italy</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Molecular Plant Physiology, Institute of Environmental Biology, Utrecht University</institution>, <addr-line>Utrecht</addr-line>, <country>Netherlands</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Val&#xe9;rie Legu&#xe9;, Universit&#xe9; Clermont Auvergne, France</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Francisco Javier Medina, Superior Council of Scientific Investigations, Spain; John Z. Kiss, University of North Carolina at Greensboro, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Luigi Gennaro Izzo, <email xlink:href="mailto:luigigennaro.izzo@unina.it">luigigennaro.izzo@unina.it</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Plant Abiotic Stress, a section of the journal Frontiers in Plant Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>21</day>
<month>02</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<year>2019</year>
</pub-date>
<volume>10</volume>
<elocation-id>1807</elocation-id>
<history>
<date date-type="received">
<day>22</day>
<month>07</month>
<year>2019</year>
</date>
<date date-type="accepted">
<day>24</day>
<month>12</month>
<year>2019</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2020 Muthert, Izzo, van Zanten and Aronne</copyright-statement>
<copyright-year>2020</copyright-year>
<copyright-holder>Muthert, Izzo, van Zanten and Aronne</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Root tropisms are important responses of plants, allowing them to adapt their growth direction. Research on plant tropisms is indispensable for future space programs that envisage plant-based life support systems for long-term missions and planet colonization. Root tropisms encompass responses toward or away from different environmental stimuli, with an underexplored level of mechanistic divergence. Research into signaling events that coordinate tropistic responses is complicated by the consistent coincidence of various environmental stimuli, often interacting <italic>via</italic> shared signaling mechanisms. On Earth the major determinant of root growth direction is the gravitational vector, acting through gravitropism and overruling most other tropistic responses to environmental stimuli. Critical advancements in the understanding of root tropisms have been achieved nullifying the gravitropic dominance with experiments performed in the microgravity environment. In this review, we summarize current knowledge on root tropisms to different environmental stimuli. We highlight that the term tropism must be used with care, because it can be easily confused with a change in root growth direction due to asymmetrical damage to the root, as can occur in apparent chemotropism, electrotropism, and magnetotropism. Clearly, the use of <italic>Arabidopsis thaliana</italic> as a model for tropism research contributed much to our understanding of the underlying regulatory processes and signaling events. However, pronounced differences in tropisms exist among species, and we argue that these should be further investigated to get a more comprehensive view of the signaling pathways and sensors. Finally, we point out that the Cholodny-Went theory of asymmetric auxin distribution remains to be the central and unifying tropistic mechanism after 100 years. Nevertheless, it becomes increasingly clear that the theory is not applicable to all root tropistic responses, and we propose further research to unravel commonalities and differences in the molecular and physiological processes orchestrating root tropisms.</p>
</abstract>
<kwd-group>
<kwd>
<italic>Arabidopsis</italic>
</kwd>
<kwd>Cholodny-Went</kwd>
<kwd>directional growth</kwd>
<kwd>gravitropism</kwd>
<kwd>microgravity</kwd>
</kwd-group>
<counts>
<fig-count count="1"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="255"/>
<page-count count="22"/>
<word-count count="14183"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Although plants are sessile organisms, their organs including roots are not motionless. Movements of plant have fascinated scientists for ages (<xref ref-type="bibr" rid="B234">Whippo and Hangarter, 2006</xref>). This includes Charles Darwin who laid the foundations for accurate studies on movements of different plant organs in response to external directional stimuli, especially light and gravity (<xref ref-type="bibr" rid="B30">Darwin and Darwin, 1880</xref>). One particular type of plant movement are tropistic responses, defined as &#x201c;a directional growth response to a directional stimulus&#x201d; (<xref ref-type="bibr" rid="B70">Gilroy, 2008</xref>). Tropistic responses are distinguished from nastic responses by being directional relative to the stimulus. Tropisms can be classified as &#x201c;positive&#x201d; or &#x201c;negative&#x201d; according to the exhibited growth toward or away from the directional stimulus, respectively (<xref ref-type="bibr" rid="B192">Schrank, 1950</xref>; <xref ref-type="bibr" rid="B70">Gilroy, 2008</xref>).</p>
<p>Root tropisms are exerted through differentially-regulated cell growth on opposite sides of the root tip in specific root zones (<xref ref-type="bibr" rid="B69">Gilroy and Masson, 2008</xref>). Until the early 2000s the traditional anatomical view identified three main zones in the root tip, directly distal from the root cap: the root apical meristematic zone (MZ), the elongation zone (EZ), and the differentiation zone (DZ), which was based on the premise that cell elongation initiates immediately after the apical meristem (<xref ref-type="bibr" rid="B36">Dolan and Davies, 2004</xref>). However, evidence of a distinct cell population in the part of the EZ more distal from the base of the root has been presented in the last three decades. This region was dubbed distal elongation zone (DEZ) initially, and later transition zone (TZ), due to its unique characteristics (<xref ref-type="bibr" rid="B85">Ishikawa and Evans, 1993</xref>; <xref ref-type="bibr" rid="B226">Verbelen et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B7">Balu&#x161;ka et&#xa0;al., 2010</xref>). In the current view, four zones are thus identified, each characterized by specific cell types, cellular activities, and specific responses to tropistic signals (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>, <xref ref-type="table" rid="T1">
<bold>Table 1</bold>
</xref>). The root cap consists of the columella and the lateral root cap surrounding the MZ, a zone of &#x200b;&#x200b;active cell divisions which is followed by the TZ (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>). The cells in the TZ undergo isodiametric cell growth with nuclei located in the center of the cells, similar to the meristem. Following the TZ, cells in the EZ rapidly elongate and nuclei are pushed toward the lateral cell walls due to the formation of large central vacuoles. Cells progressively slow down their elongation and finally reach their mature lengths within the differentiation zone (DZ), which is characterized by root hair development (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B226">Verbelen et&#xa0;al., 2006</xref>).</p>
<fig id="f1" position="float">
<label>Figure 1</label>
<caption>
<p>Schematic representation of a longitudinal cross section of an <italic>Arabidopsis</italic> root apex, indicating the four distinct developmental zones: the meristematic zone (MZ; pink), the transition zone (TZ; purple), also known as distal elongation zone (DEZ), the elongation zone (EZ; blue), and the differentiation zone (DZ; green). The root cap is indicated in gray and consists of the columella root cap (COL) and the lateral root cap (LRC) that, together with the MZ, surround the quiescent center (QC). Known or suspected sensor and action regions are indicated alongside the root. Tropisms within parentheses are likely not <italic>sensu stricto</italic> tropisms. BL, blue light; RL, red light. *Specific localization in the cortex of the EZ. **Suspected localizations.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-10-01807-g001.tif"/>
</fig>
<table-wrap id="T1" position="float">
<label>Table 1</label>
<caption>
<p>Root tropism sensor regions, signaling mechanism, and action regions in <italic>Arabidopsis thaliana</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top">Tropism</th>
<th valign="top" align="center"/>
<th valign="top" align="center">Sensor region</th>
<th valign="top" align="center">Signalling</th>
<th valign="top" align="center">Action region</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top">
<italic>Gravitropism</italic>
</td>
<td valign="top" align="left">
<italic>primary</italic>
</td>
<td valign="top" align="left">Columella S1 and S2<sup>[1]</sup>
</td>
<td valign="top" align="left">Cholodny-Went<sup>[2]</sup>
</td>
<td valign="top" align="left">Basal TZ<sup>[3]</sup>
</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>secondary</italic>
</td>
<td valign="top" align="left">TZ or EZ<sup>[4]</sup>
</td>
<td valign="top" align="left">Likely not C-W<sup>[5]</sup>
</td>
<td valign="top" align="left">Apical TZ<sup>[4]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>Hydrotropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">EZ<sup>[6]</sup>
</td>
<td valign="top" align="left">Likely not C-W<sup>[7]</sup>
</td>
<td valign="top" align="left">EZ cortex<sup>[6, 3]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>Phototropism</italic>
</td>
<td valign="top" align="left">
<italic>BL neg.</italic>
</td>
<td valign="top" align="left">Likely EZ or root cap<sup>[8, 9, 10]</sup>
</td>
<td valign="top" align="left">Likely not C-W<sup>[11]</sup>
</td>
<td valign="top" align="left">EZ<sup>[10]</sup>
</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>RL pos.</italic>
</td>
<td valign="top" align="left">Possibly root cap<sup>[12, 13]</sup>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">EZ<sup>[12]</sup>
</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>BL pos.</italic>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>Halotropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Cholodny-Went<sup>[14]</sup>
</td>
<td valign="top" align="left">Likely EZ*<sup> [15, 16]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>Thigmotropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Strongest in root cap<sup>[17]</sup>
</td>
<td valign="top" align="left">C-W <sup>[18]</sup>
</td>
<td valign="top" align="left">EZ <sup>[17]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>(Electrotropism<sup>&#x2020;</sup>
)</italic>
</td>
<td valign="top" align="left">
<italic>primary</italic>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">TZ<sup>[19]</sup>
</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>secondary</italic>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">EZ<sup>[19]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>(Thermotropism<sup>&#x2020;</sup>
)</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>Oxytropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Possibly C-W<sup>[20]</sup>
</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>(Phonotropism<sup>&#x2020;</sup>
)</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">I.a. Ca<sup>2+ [21]</sup>
</td>
<td valign="top" align="left">Unknown</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>*Despite a lack of direct reporting, the action region of halotropism is likely in the EZ, as it is a Cholodny-Went tropism.</p>
<p><sup>&#x2020;</sup>Likely not a sensu stricto tropism.</p>
<p><sup>[1]</sup>(<xref ref-type="bibr" rid="B14">Blancaflor et&#xa0;al., 1998</xref>), <sup>[2]</sup>(<xref ref-type="bibr" rid="B66">Geisler et&#xa0;al., 2014</xref>), <sup>[3]</sup>(<xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>), <sup>[4]</sup>(<xref ref-type="bibr" rid="B238">Wolverton et&#xa0;al., 2002</xref>), <sup>[5]</sup>(<xref ref-type="bibr" rid="B239">Wolverton et&#xa0;al., 2011</xref>), <sup>[6]</sup>(<xref ref-type="bibr" rid="B33">Dietrich et&#xa0;al., 2017</xref>), <sup>[7]</sup>(<xref ref-type="bibr" rid="B196">Shkolnik et&#xa0;al., 2016</xref>), <sup>[8]</sup>(<xref ref-type="bibr" rid="B184">Sakamoto and Briggs, 2002</xref>), <sup>[9]</sup>(<xref ref-type="bibr" rid="B20">Briggs and Christie, 2002</xref>), <sup>[10]</sup>(<xref ref-type="bibr" rid="B156">Mullen et&#xa0;al., 2002</xref>), <sup>[11]</sup>(<xref ref-type="bibr" rid="B96">Kimura et&#xa0;al., 2018</xref>), <sup>[12]</sup>(<xref ref-type="bibr" rid="B100">Kiss et&#xa0;al., 2003b</xref>), <sup>[13]</sup>(<xref ref-type="bibr" rid="B187">Salisbury et&#xa0;al., 2007</xref>), <sup>[14]</sup>(<xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>), <sup>[15]</sup>(<xref ref-type="bibr" rid="B222">van den Berg et&#xa0;al., 2016</xref>), <sup>[16]</sup>(<xref ref-type="bibr" rid="B245">Yokawa et&#xa0;al., 2014</xref>), <sup>[17]</sup>(<xref ref-type="bibr" rid="B136">Massa and Gilroy, 2003</xref>), <sup>[18]</sup>(<xref ref-type="bibr" rid="B122">Lee et&#xa0;al., 2020</xref>), <sup>[19]</sup>(<xref ref-type="bibr" rid="B237">Wolverton et&#xa0;al., 2000</xref>), <sup>[20]</sup>(<xref ref-type="bibr" rid="B42">Eysholdt-Derzs&#xf3; and Sauter, 2017</xref>), <sup>[21]</sup>(<xref ref-type="bibr" rid="B180">Rodrigo-Moreno et&#xa0;al., 2017</xref>).</p>
</table-wrap-foot>
</table-wrap>
<p>In the late nineteenth and early twentieth century, several phenomenological studies on tropisms were conducted. During the final decades of the twentieth century, the focus moved to studies on the molecular mechanisms of root tropisms, enabled by new techniques in molecular genetics and supported in the first decade of the twenty-first century by special research environments such as the International Space Station (ISS) (<xref ref-type="bibr" rid="B236">Wolverton and Kiss, 2009</xref>; <xref ref-type="bibr" rid="B102">Kiss, 2015</xref>). Currently, research on plant tropisms becomes critical for advancing plant-based life support systems in space considering their fundamental role in producing fresh food and recycling of air and water (<xref ref-type="bibr" rid="B119">Lasseur et&#xa0;al., 2010</xref>). More in-depth knowledge of root growth response to a directional stimulus is required to design plant-based life support facilities able to guide root growth in a desired direction, as the gravity vector is absent in space. At the same time, the possibility of performing explorative experiments in the space environment, together with the development of new technologies, is also crucial to pave the way toward the goal of deepening our fundamental understanding of plant tropisms and their underlying molecular networks on Earth (<xref ref-type="bibr" rid="B17">Borst and van Loon, 2009</xref>; <xref ref-type="bibr" rid="B56">G&#xf3;mez and Izzo, 2018</xref>).</p>
<p>Many different types of tropisms have been proposed over the years. Of these, gravitropism, phototropism, hydrotropism, halotropism, and thigmotropism are the most extensively studied. Physiological studies from around the turn of the twentieth century also investigated directional growth responses to electrical, chemical, and temperature gradients, among others (<xref ref-type="bibr" rid="B10">Bennett, 1904</xref>; <xref ref-type="bibr" rid="B50">Fitting, 1905</xref>). Some of these have received renewed attention in the 1990's, the most important of which being chemotropism, magnetotropism, electrotropism, and oxytropism. Whether these can be categorized as <italic>bona fide</italic> tropisms <italic>sensu stricto</italic> (i.e., directional growth responses to a directional stimulus (<xref ref-type="bibr" rid="B70">Gilroy, 2008</xref>) is in many cases still a matter of debate. However, it is certainly possible that more tropisms are still to be identified, as the recently proposed phonotropism illustrates (<xref ref-type="bibr" rid="B180">Rodrigo-Moreno et&#xa0;al., 2017</xref>).</p>
<p>In this review, an overview of all known and proposed tropistic responses with a focus on the roots is provided, and current insight into the different types of tropisms and their underlying molecular signaling mechanisms is discussed.</p>
</sec>
<sec id="s2">
<title>Gravitropism</title>
<p>Our fundamental understanding of the reliable downward movement of plant roots is based on the Cholodny-Went theory (<xref ref-type="bibr" rid="B26">Cholodny, 1927</xref>; <xref ref-type="bibr" rid="B233">Went, 1928</xref>; <xref ref-type="bibr" rid="B161">Orbovik and Poff, 1993</xref>). Their central premise that a differential localization of auxin causes differential elongation still stands firm (<xref ref-type="bibr" rid="B189">Sato et&#xa0;al., 2015</xref>). According to this theory, accumulation of auxin in the root tip on the side closest to the direction of the gravity vector triggers a decrease in cell elongation within the basal zone of the root cap, causing the root to bend in the direction of the gravity vector (<xref ref-type="bibr" rid="B66">Geisler et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>).</p>
<p>An important elaboration on the Cholodny-Went theory is the auxin fountain model, that proposed how differential auxin levels in the root are established and regulated (<xref ref-type="bibr" rid="B112">Kramer and Bennett, 2006</xref>; <xref ref-type="bibr" rid="B72">Grieneisen et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B140">Mironova et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B66">Geisler et&#xa0;al., 2014</xref>). Most of the auxin in plant roots is synthesized in and around the columella cells (<xref ref-type="bibr" rid="B172">Petersson et&#xa0;al., 2009</xref>). According to the fountain model, auxin flows upward from these synthesis sites through the epidermis and partially flows back through the cortex, endodermis, and pericycle to the vasculature, where it returns to the root tip. When the root is not positioned in the direction of gravity, the auxin flow toward the basal oriented part is increased, while the flow to the adaxial parts decreases (<xref ref-type="bibr" rid="B66">Geisler et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B208">Swarup and Bennett, 2018</xref>). After gravitropic bending, not all plant roots are fully oriented in the direction of the gravity vector, but at various angles, based on the developmental stage and environmental circumstances. This fixed growth angle has been called the gravitropic set-point angle (GSA), which is at 0&#xb0; when the root grows straight downwards (<xref ref-type="bibr" rid="B35">Digby and Firn, 1995</xref>).</p>
<p>Like in most responses to environmental signals, three distinct phases are typically recognized in the process of gravitropism: perception of the stimulus, signal transmission, and growth response (<xref ref-type="bibr" rid="B219">Toyota and Gilroy, 2013</xref>). Sensing of the gravity vector occurs in the columella cells, located in the center of the root cap (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>). There, starch-rich amyloplasts, called statoliths, sediment in aggregates within the cell in response to gravity, due to their high mass (<xref ref-type="bibr" rid="B124">Leitz et&#xa0;al., 2009</xref>). The statoliths are free to sediment through the cytoplasm, in part because the nuclei are located at the top of the cells, the vacuoles are small, and because the endoplasmic reticula (ER) lie close to the plasma membrane (<xref ref-type="bibr" rid="B153">Morita and Tasaka, 2004</xref>).</p>
<p>As plastids, the amyloplasts possess a Translocon at the Outer Envelope Membrane of Chloroplasts (TOC) complex, which functions in gravitropism as well (<xref ref-type="bibr" rid="B201">Stanga et&#xa0;al., 2009</xref>). Disruption of the central pore protein, TOC75, or one of the receptor proteins, TOC132, strongly enhances the gravitropic deficiency of the <italic>altered response to gravity (arg1)</italic> mutant. ARG1 and its paralog ARG1-LIKE2 (ARL2) are type-II DnaJ-like peripheral membrane proteins and localize to the plasma membrane and the BFA sensitive endomembrane trafficking pathway (<xref ref-type="bibr" rid="B16">Boonsirichai et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B75">Harrison and Masson, 2008</xref>). While ARG1 is expressed throughout the whole plant, ARL2 is specifically expressed in the columella cells. Outside of the <italic>arg1</italic> mutant background, disruption of TOC132 or TOC75 does not, or only slightly attenuate gravitropism, respectively (<xref ref-type="bibr" rid="B201">Stanga et&#xa0;al., 2009</xref>). These findings suggest a role in the early gravitropic signaling for ARG1 and the TOC complex.</p>
<p>In accordance with the starch-statolith hypothesis, starchless <italic>Arabidopsis thaliana phosphoglucomutase</italic> (<italic>pgm</italic>) mutants displayed strongly reduced gravitropism (<xref ref-type="bibr" rid="B23">Caspar and Pickard, 1989</xref>). However, some gravitropic responsiveness remained in the <italic>pgm</italic> mutants, suggesting that statolith movement alone may not be sufficient to account for all gravity sensing (<xref ref-type="bibr" rid="B23">Caspar and Pickard, 1989</xref>; <xref ref-type="bibr" rid="B97">Kiss et&#xa0;al., 1989</xref>).</p>
<p>There are several theories about how the directional sedimentation of the statoliths affects processes in the cell to alter auxin flows (<xref ref-type="bibr" rid="B204">Strohm et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B206">Su et&#xa0;al., 2017</xref>). According to <xref ref-type="bibr" rid="B124">Leitz et&#xa0;al. (2009)</xref>, the sedimentation of statoliths on the cortical ER causes ~200 nm indents, resulting in local expansion of the membrane surface of 15&#x2013;20%. Mechanosensitive ion channels, particularly those for Ca<sup>2+</sup>, could be activated by this membrane distortion (<xref ref-type="bibr" rid="B73">Hamill and Martinac, 2001</xref>). The ER, where the statoliths sediment, is also a major storage compartment for Ca<sup>2+</sup> (<xref ref-type="bibr" rid="B221">Urbina et&#xa0;al., 2006</xref>). This could connect the sedimentation of the statoliths to the later bi-phasic Ca<sup>2+</sup> pulse characteristic of gravitropic signaling (<xref ref-type="bibr" rid="B176">Plieth and Trewavas, 2002</xref>). A detailed discussion of Ca<sup>2+</sup> kinetics in gravitropism is summarized in <xref ref-type="bibr" rid="B216">Tatsumi et&#xa0;al. (2014)</xref>.</p>
<p>The protoplast-pressure model is a modification of the ER membrane distortion theory, stating that the pressure of protoplast on the plasma membrane causes mechanosensitive ion channels to open, instead of local pressure exerted by statoliths (<xref ref-type="bibr" rid="B231">Wayne and Staves, 1996</xref>; <xref ref-type="bibr" rid="B243">Yoder et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B170">Perbal and Driss-Ecole, 2003</xref>). Statoliths do however add extra ballast to protoplasts, enabling the application of more pressure on the plasma membrane. Accordingly, 5<italic>g</italic> acceleration was sufficient to fully restore gravitropism after starchless <italic>pgm</italic> mutants were exposed to hypergravity conditions during centrifugation (<xref ref-type="bibr" rid="B51">Fitzelle and Kiss, 2001</xref>).</p>
<p>The alternative ligand-receptor interaction model adds to both the local and protoplast-pressure membrane distortion theories in explaining more directly how secondary messengers are activated. The ligand-receptor interaction model proposes that the contact between a ligand on the membrane of the statoliths and a receptor on the outer membrane of the ER results in the activation of cortical ER ion channels after sedimentation (<xref ref-type="bibr" rid="B204">Strohm et&#xa0;al., 2012</xref>). A promising candidate for interaction with this putative ER receptor was the TOC132 receptor protein, extending into the cytosol from the TOC complex on the statolith membrane (<xref ref-type="bibr" rid="B201">Stanga et&#xa0;al., 2009</xref>). However, the cytosolic domain of TOC132 turned out not to be necessary for a full gravitropic response (<xref ref-type="bibr" rid="B205">Strohm et&#xa0;al., 2014</xref>). Despite indications that the ligand-receptor model holds true for the alga <italic>Chara globularis</italic>, to the best of our knowledge, no evidence for the ligand-receptor interaction model has been presented in flowering plants so far (<xref ref-type="bibr" rid="B18">Braun, 2002</xref>).</p>
<p>Recently, the membrane phospholipid phospholipase C2 (PLC2) was shown to influence polar distribution of PIN2 in the early gravitropic signaling cascade (<xref ref-type="bibr" rid="B25">Chen et&#xa0;al., 2019</xref>). Gravitropic defects of <italic>Arabidopsis</italic> roots with inhibited PLC activity were previously reported, indicating that PLCs are involved in gravitropism (<xref ref-type="bibr" rid="B2">Andreeva et&#xa0;al., 2010</xref>). However, this was possibly due to these seedlings also displaying severe morphological and growth defects. PLC2 is known to produce the common secondary messenger inositol 1,4,5-trisphosphate (InsP<sub>3</sub>) and 1,2-diacyglycerol (DAG) from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PtdInsP<sub>2</sub>) (<xref ref-type="bibr" rid="B32">DeWald et&#xa0;al., 2001</xref>). InsP<sub>3</sub> is involved in the early stages of gravitropism, before the establishment of the auxin asymmetry (<xref ref-type="bibr" rid="B171">Perera et&#xa0;al., 2006</xref>). By generating transgenic lines expressing human type I InsP 5-ptase, which hydrolyses InsP<sub>3</sub>, levels of InsP<sub>3</sub> were reduced by at least 90%. This caused a decrease in establishment of auxin asymmetry, resulting in a slower and 30% decreased gravitropic response compared to wild-type <italic>Arabidopsis</italic> (<xref ref-type="bibr" rid="B171">Perera et&#xa0;al., 2006</xref>). Furthermore, InsP<sub>3</sub> has been shown to influence gene expression in reaction to a gravitropic stimulus (<xref ref-type="bibr" rid="B186">Salinas-Mondragon et&#xa0;al., 2010</xref>). Of the downregulated genes, a substantial number is related to plastids and mitochondria. Of the upregulated genes, several are transcription factors and protein kinases linked to Ca<sup>2+</sup> regulation (<xref ref-type="bibr" rid="B186">Salinas-Mondragon et&#xa0;al., 2010</xref>). This link between InsP<sub>3</sub> and Ca<sup>2+</sup> is corroborated by the observed close association between the two secondary messengers in both timing and effect in relation to PIN regulation (<xref ref-type="bibr" rid="B246">Zhang J. et&#xa0;al., 2011</xref>). However, although an InsP<sub>3</sub>-gated Ca<sup>2+</sup> release channel in the ER membrane has been identified in mammalian cells, no such direct link has yet been found in plants (<xref ref-type="bibr" rid="B247">Zhang S. et&#xa0;al., 2011</xref>).</p>
<p>Changes in pH are also involved in the early gravitropic signaling. While the root cap apoplast pH decreased from 5.5 to 4.5, the pH of columella cell cytoplasm increased from 7.2 to 7.6 after gravitropic stimulation (<xref ref-type="bibr" rid="B44">Fasano et&#xa0;al., 2001</xref>). Preventing the pH increase of columella cytoplasm through the release of caged protons also delayed the onset of gravitropism. Mutants lacking <italic>ALTERED RESPONSE TO GRAVITY (ARG1)</italic> did not display this pH change in the root cap and show reduced and delayed gravitropism (<xref ref-type="bibr" rid="B16">Boonsirichai et&#xa0;al., 2003</xref>). Both ARG1 and plasma membrane H<sup>+</sup>-ATPases are localized to the plasma membrane and the BFA sensitive endomembrane trafficking pathway, which could be connected to the effect of ARG1 on cytoplasm pH (<xref ref-type="bibr" rid="B16">Boonsirichai et&#xa0;al., 2003</xref>).</p>
<p>Using the microgravity (&#xb5;<italic>g</italic>) environment of the ISS, the involvement of the cytoskeleton in gravitropism has been established. In microgravity, lentil (<italic>Lens culinaris</italic>) amyloplasts were clustered in the proximal part of the columella cells, which was contrary to the random distribution of amyloplasts in the plants grown on a clinostat; i.e., a rotating device used to simulate a low gravity environment for plant growth (<xref ref-type="bibr" rid="B169">Perbal and Driss-Ecole, 1989</xref>). This result indicated involvement of actomyosin in the positioning of amyloplasts, which was later corroborated (<xref ref-type="bibr" rid="B37">Driss-Ecole et&#xa0;al., 2000</xref>). It also showed that the randomization of the gravity vector achieved by the clinostat does not elicit the same effects as the -virtual- absence of the gravity vector in &#xb5;<italic>g</italic> conditions (<xref ref-type="bibr" rid="B197">Sievers and Hejnowics, 1992</xref>; <xref ref-type="bibr" rid="B80">Hoson et&#xa0;al., 1997</xref>). In microgravity conditions, statoliths do not have sedimenting amyloplasts. Thus these cells also lack an asymmetrical distribution of auxin in the root (<xref ref-type="bibr" rid="B45">Ferl and Paul, 2016</xref>). Several papers also indicated that actin in the cytoskeleton has a significant role in gravity signaling, as pressure exerted by sedimentation of statoliths on actin polymers could conduct a physical pressure signal toward the plasma membrane or ER membrane, causing ion channels to open (<xref ref-type="bibr" rid="B243">Yoder et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B170">Perbal and Driss-Ecole, 2003</xref>). Additionally, the ARP3 subunit of the Actin-Related Protein 2/3 (ARP2/3) complex is involved in regulating amyloplast sedimentation kinetics, as <italic>Arabidopsis distorted1 (dis1)</italic> mutants lacking ARP3 display a delayed response to gravitropic stimulation (<xref ref-type="bibr" rid="B252">Zou et&#xa0;al., 2016</xref>). However, the exact role of the cytoskeleton deserves more attention, as pharmacological experiments gave contradictory results, showing both inhibition and promotion of gravitropism (<xref ref-type="bibr" rid="B129">Ma and Hasenstein, 2006</xref>; <xref ref-type="bibr" rid="B13">Blancaflor, 2013</xref>). A detailed overview of studies of early gravitropic signaling is summarized in <xref ref-type="bibr" rid="B158">Nakamura et&#xa0;al. (2019)</xref>.</p>
<p>Once perceived by the statoliths, the gravitropic signal generates a differential auxin distribution in the root. This process is dependent on the auxin influx carrier AUX1, which is expressed in the root tip and elongation zone (EZ, also known as the central elongation zone) (<xref ref-type="bibr" rid="B135">Marchant, 1999</xref>). Interestingly, recent experiments indicated that auxin is not only involved in the regulation of the gravitropic response, but also indirectly in gravitropic perception. Through the TIR1/AFB auxin receptor signaling pathway, auxin regulates the <italic>PHOSPHOGLUCOMUTASE (PGM), ADENOSINE DIPHOSPHATE GLUCOSE PYROPHOSPHORYLASE (ADG)</italic> and <italic>STARCH SYNTHASE 4</italic> (<italic>SS4)</italic> starch synthesis genes that are responsible for the establishment of statoliths in the cell (<xref ref-type="bibr" rid="B250">Zhang et&#xa0;al., 2019</xref>).</p>
<p>The change in auxin flow direction in roots that are not orientated toward the gravity vector is mediated by relocation of the PIN-FORMED3 (PIN3) and PIN7 auxin efflux carrier proteins (<xref ref-type="bibr" rid="B54">Friml et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B105">Kleine-Vehn et&#xa0;al., 2010</xref>). When the root is positioned vertically, these proteins are present at all sides of the columella cells. During gravistimulation, vesicles from endosomal compartments containing these PIN proteins relocate to the then lowest part of the cell, thereby providing increased efflux of auxin at that side, and decreased efflux on the opposite (upward oriented) parts of the cell (<xref ref-type="bibr" rid="B67">Geldner et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B55">Friml, 2010</xref>). For the relocation of PIN3 in the gravity sensing columella cells, ARG1 and ARL2 are necessary (<xref ref-type="bibr" rid="B75">Harrison and Masson, 2008</xref>).The innermost columella cells of the second tier are thought to have the most influence on the redirection of auxin (<xref ref-type="bibr" rid="B14">Blancaflor et&#xa0;al., 1998</xref>).</p>
<p>Next to roles for PIN3 and PIN7, changes in auxin flux affect the localization and degradation of PIN2 proteins that mediate the basipetal auxin flow. High auxin levels cause PIN2 proteins to be retained longer in the plasma membrane (<xref ref-type="bibr" rid="B162">Paciorek et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B1">Abas et&#xa0;al., 2006</xref>). Auxin has also been shown to increase proteasomal degradation of PIN2 proteins, suggesting a complex homeostatic mechanism that controls the extension of the polar auxin distribution from the columella cells to the EZ (<xref ref-type="bibr" rid="B1">Abas et&#xa0;al., 2006</xref>). Alongside increased auxin, PLC2 is also needed for proper retainment of PIN2 in the plasma membrane (<xref ref-type="bibr" rid="B25">Chen et&#xa0;al., 2019</xref>). Additionally, <italic>plc2</italic> mutants have reduced auxin content and reduced responsiveness to exogenous auxin. After relocation and degradation of PIN proteins in the root cap, the differential auxin distribution is extended toward the EZ, due to the auxin fountain mechanism (<xref ref-type="bibr" rid="B72">Grieneisen et&#xa0;al., 2007</xref>). In the basal part of the transition zone (TZ, also known as the distal elongation zone or DEZ), most of the gravitropic bending takes place in response to the auxin asymmetry (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>).</p>
<p>Based on experiments where gravitropism was induced while the root tip was maintained at a constant angle against the gravity vector, <xref ref-type="bibr" rid="B238">Wolverton et&#xa0;al. (2002)</xref> proposed that a second gravity sensor could be located in the apical part of the TZ that contributes ~20% to the total gravitropic curvature (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>). This has been called the &#x201c;dual motors and sensors&#x201d; theory. During gravistimulation, the electrical properties of the TZ changed markedly, indicating that this alternative gravity sensor could involve electrical signals (<xref ref-type="bibr" rid="B83">Ishikawa and Evans, 1990a</xref>; <xref ref-type="bibr" rid="B28">Collings et&#xa0;al., 1992</xref>). The presence of a second sensor and motor could also explain why <italic>pgm1</italic> mutants retained one third of the rate of wild type gravitropism, without a need for an auxin gradient (<xref ref-type="bibr" rid="B98">Kiss et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B239">Wolverton et&#xa0;al., 2011</xref>).</p>
<p>Ion channel activity of plant cells and their selective retention of charges cause electric currents in their cellular environment, which are altered by increased asymmetric proton efflux during gravitropism (<xref ref-type="bibr" rid="B83">Ishikawa and Evans, 1990a</xref>; <xref ref-type="bibr" rid="B5">Balu&#x161;ka and Mancuso, 2013</xref>). The electrical current density and orientation differ among different regions of maize (<italic>Zea mays</italic>) roots, as <xref ref-type="bibr" rid="B28">Collings et&#xa0;al. (1992)</xref> have noted. The TZ exhibits an inward oriented current, which is contrary to the outward orientation in the meristem, EZ, and basal end of the elongation zone. A similar pattern has been recorded for cress (<italic>Lepidium sativum</italic>) (<xref ref-type="bibr" rid="B232">Weisenseel et&#xa0;al., 1992</xref>). However, while the role of electrical currents in gravitropism is comparable, differences between species are apparent, as blocking of Ca<sup>2+</sup> channels in maize had no effect on gravitropism, while limiting Ca<sup>2+</sup> availability abolished gravitropism in cress (<xref ref-type="bibr" rid="B28">Collings et&#xa0;al., 1992</xref>; <xref ref-type="bibr" rid="B232">Weisenseel et&#xa0;al., 1992</xref>).</p>
<p>Within minutes after gravistimulation, the electrical current symmetry is disturbed. An increased proton efflux then creates a strong outward current at the upper surface of the horizontal root, near the root tip. In maize, this phenomenon has been observed at 1 to 2.5 mm from the root tip and in cress at 0 to 4 mm from the root tip (<xref ref-type="bibr" rid="B28">Collings et&#xa0;al., 1992</xref>; <xref ref-type="bibr" rid="B232">Weisenseel et&#xa0;al., 1992</xref>). This location partly corresponds to the location of the TZ. No basipetally propagating wave of proton efflux was detected in maize. Instead, it seemed that the efflux was synchronized in the youngest cells of the EZ, which is around 2.5 mm distal from the root tip in maize (<xref ref-type="bibr" rid="B28">Collings et&#xa0;al., 1992</xref>). While this increase in proton efflux in the TZ is linked by both <xref ref-type="bibr" rid="B28">Collings et&#xa0;al. (1992)</xref> and <xref ref-type="bibr" rid="B232">Weisenseel et&#xa0;al. (1992)</xref> to cell growth by apoplast acidification, the cytoskeletal rearrangements that are required for elongation are almost completely absent in the TZ. Because of this, the zone is also named the transition zone (TZ) instead of the distal elongation zone (<xref ref-type="bibr" rid="B7">Balu&#x161;ka et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B5">Balu&#x161;ka and Mancuso, 2013</xref>). As there is little elongation in the TZ, the bending in this second gravitropic motor and sensor region likely requires a different mechanism, as proposed by <xref ref-type="bibr" rid="B238">Wolverton et&#xa0;al. (2002)</xref>. According to <xref ref-type="bibr" rid="B7">Balu&#x161;ka et&#xa0;al. (2010)</xref>, the progression of cells into and through the TZ is decreased on the lower side and increased on the upper side of a horizontally oriented root. These differences in developmental speed then cause the root to bend at the TZ. Interestingly, the TZ has a peak of so called &#x201c;brefeldin A (BFA)-induced compartments&#x201d; that form because the BFA compound blocks endoplasmic reticulum to Golgi apparatus transport upon pharmacological application (<xref ref-type="bibr" rid="B103">Klausner et&#xa0;al., 1992</xref>). This peak precisely coincides with the location of TZ bending (<xref ref-type="bibr" rid="B7">Balu&#x161;ka et&#xa0;al., 2010</xref>). Since proper PIN2 localization also functions through a BFA-sensitive pathway, PIN2 retention in the TZ could have a critical role in the TZ gravitropic bending response (<xref ref-type="bibr" rid="B1">Abas et&#xa0;al., 2006</xref>).</p>
<p>In response to the established auxin asymmetry, root growth is altered asymmetrically. It is proposed that a large part of this change is caused by Ca<sup>2+</sup> waves that elicit a change in pH (<xref ref-type="bibr" rid="B152">Monshausen et&#xa0;al., 2011</xref>). Within 2 to 6 min after reorientation, the upper flank epidermis experienced a Ca<sup>2+</sup> level reduction and a pH decrease. The lower flank epidermis experiences the reverse, within the same time window (<xref ref-type="bibr" rid="B150">Monshausen and Sievers, 2002</xref>; <xref ref-type="bibr" rid="B152">Monshausen et&#xa0;al., 2011</xref>). The Ca<sup>2+</sup> level reduction and a pH changes are likely connected to cell wall loosening, allowing for expansion when auxin levels are high (<xref ref-type="bibr" rid="B152">Monshausen et&#xa0;al., 2011</xref>). Gravitropic curvature in roots is also partially dependent on a transcriptional response to high auxin, enabled through decreased repression of auxin response factors (ARFs) by AUX/IAA proteins (<xref ref-type="bibr" rid="B206">Su et&#xa0;al., 2017</xref>).</p>
<p>Reactive oxygen species (ROS) have been shown to accumulate in root tips of gravistimulated maize in response to auxin (<xref ref-type="bibr" rid="B88">Joo et&#xa0;al., 2001</xref>). This accumulation was strongly reduced when phosphatidylinositol 3-kinase (PtdIns 3-kinase) activity was blocked, leading to reduced gravitropic reaction of the roots (<xref ref-type="bibr" rid="B89">Joo et&#xa0;al., 2005</xref>). A later report specified that the accumulation of ROS was higher at the concave or lower side of the root in the TZ after gravistimulation (<xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>). Other than the involvement of PtdIns 3-kinase and its product, phosphatidylinositol 3-phosphate (PtdIns3P), little is known about the asymmetric ROS gradient generated in response to gravitropically increased auxin levels.</p>
<p>Asymmetric increase of nitric oxide (NO) levels, centered around the TZ of the lower root side, is crucial for root gravitropism (<xref ref-type="bibr" rid="B163">Par&#xed;s et&#xa0;al., 2018</xref>). When NO was reduced by adding a NO scavenger to the medium, cells of gravistimulated roots did not exhibit a PIN2 asymmetry in their plasma membranes. However, growth of <italic>Arabidopsis</italic> in general was also severely inhibited, prohibiting the drawing of sound conclusions on the specificity of NO effects on root gravitropism (<xref ref-type="bibr" rid="B163">Par&#xed;s et&#xa0;al., 2018</xref>).</p>
<p>Similarly, an asymmetric increase of gibberellic acid (GA) levels is found at the lower side of gravistimulated roots (<xref ref-type="bibr" rid="B118">L&#xf6;fke et&#xa0;al., 2013</xref>). Higher auxin levels at the lower side of the root cause a decrease in cycling of PIN2 to the lytic vacuole in the EZ (<xref ref-type="bibr" rid="B104">Kleine-Vehn et&#xa0;al., 2008</xref>). High GA levels seem to influence PIN2 retainment in the plasma membrane in the same way, by preventing PIN protein trafficking to the lytic vacuole (<xref ref-type="bibr" rid="B118">L&#xf6;fke et&#xa0;al., 2013</xref>). The relative contribution to gravitropic bending in the EZ of this GA-mediated PIN2 stabilization, compared to the effects of auxin, has however not been determined yet.</p>
<p>Although gravitropism is the most studied tropism in plants, there are still important gaps in the knowledge of the signaling cascade. The sensory mechanism for primary gravitropism is known, but it remains largely elusive how the signal is transduced to InsP<sub>3</sub> and later Ca<sup>2+</sup> signals. Clearly, auxin asymmetry explains large parts of the gravitropic bending in the EZ. The picture is however complicated by the initiation of gravitropic curvature in the TZ. Additionally, the (possible) roles of various other signals, such as Ca<sup>2+</sup>, pH, ROS, NO, and GA levels, which are all to a certain extend altered asymmetrically in the EZ of gravistimulated roots, are poorly understood. Whether and how these signaling pathways connect to auxin signaling, or regulate gravitropic responses <italic>via</italic> parallel pathways, remains to be elucidated. Finally, as these secondary messengers are not necessarily confined to the columella, they could also constitute hubs for interaction of related tropism signaling pathways (<xref ref-type="table" rid="T2">
<bold>Table 2</bold>
</xref>) (<xref ref-type="bibr" rid="B43">Fasano et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B186">Salinas-Mondragon et&#xa0;al., 2010</xref>).</p>
<table-wrap id="T2" position="float">
<label>Table 2</label>
<caption>
<p>Secondary messengers and phytohormones (potentially) involved in <italic>Arabidopsis thaliana</italic> root tropisms. With the following abbreviations: inositol 1,4,5-trisphosphate (InsP<sub>3</sub>), phospholipase D&#x3b6;2 (PLD&#x3b6;2), phosphatidylinositol 3-phosphate (PtdIns3P), and phosphatidic acid (PA).</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" colspan="2">Tropism</th>
<th valign="top" align="center">Secondary messengers</th>
<th valign="top" align="center">Phytohormones</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top">
<italic>Gravitropism</italic>
</td>
<td valign="top" align="left">
<italic>primary</italic>
</td>
<td valign="top" align="left">Ca<sup>2+</sup> <sup>[1]</sup>
, InsP<sub>3</sub>
<sup>[2]</sup>, NO<sup>[3]</sup>, pH<sup>[1]</sup>
, PLD&#x3b6;2<sup>[4]</sup>, PtdIns3P<sup>[5]</sup>, ROS<sup>[6]</sup>
</td>
<td valign="top" align="left">Auxin<sup>[7]</sup>, gibberellic acid<sup>[8]</sup>
</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>secondary</italic>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>Hydrotropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Ca<sup>2+</sup> <sup>[9]</sup>, PLD&#x3b6;2<sup>[4]</sup>, ROS<sup>[6]</sup>
</td>
<td valign="top" align="left">ABA<sup>[10]</sup>, auxin?<sup>[11,</sup> <sup>12]</sup>, brassinosteroids<sup>[13]</sup>, cytokinin<sup>[14]</sup>, ethylene?<sup>[15]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>Phototropism</italic>
</td>
<td valign="top" align="left">
<italic>BL neg.</italic>
</td>
<td valign="top" align="left">Ca<sup>2+</sup>?<sup>[16]</sup>, Flavonoids<sup>[17]</sup>
</td>
<td valign="top" align="left">Cytokinin<sup>[18]</sup>
</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>RL pos.</italic>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top" align="right"/>
<td valign="top" align="left">
<italic>BL pos.</italic>
</td>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>Halotropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Ca<sup>2+</sup>?<sup>[19]</sup>, Flavonoids<sup>[20]</sup>, H<sub>2</sub>O<sub>2</sub>?<sup>[19]</sup>, PLD&#x3b6;2<sup>[21]</sup>
</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>Thigmotropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Ca<sup>2+</sup> <sup>[22]</sup>, pH<sup>[22]</sup>, ROS<sup>[22,</sup> <sup>23]</sup>
</td>
<td valign="top" align="left">Auxin<sup>[24]</sup>, ethylene<sup>[25]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>(Electrotropism<sup>&#x2020;</sup>
)</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>(Thermotropism<sup>&#x2020;</sup>
)</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Unknown</td>
</tr>
<tr>
<td valign="top">
<italic>Oxytropism</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Unknown</td>
<td valign="top" align="left">Auxin?<sup>[26]</sup>, ethylene<sup>[26]</sup>
</td>
</tr>
<tr>
<td valign="top">
<italic>(Phonotropism<sup>&#x2020;</sup>
)</italic>
</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Ca<sup>2+</sup> <sup>[27]</sup>, K<sup>+</sup> <sup>[27]</sup>, superoxide (O<sub>2</sub>
<sup>-</sup>)<sup>[27]</sup>
</td>
<td valign="top" align="left">Unknown</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>&#x2020;</sup>Likely not a sensu stricto tropism.</p>
<p><sup>[1]</sup>(<xref ref-type="bibr" rid="B152">Monshausen et&#xa0;al., 2011</xref>), <sup>[2]</sup>(<xref ref-type="bibr" rid="B171">Perera et&#xa0;al., 2006</xref>), <sup>[3]</sup>(<xref ref-type="bibr" rid="B163">Par&#xed;s et&#xa0;al., 2018</xref>), <sup>[4]</sup>(<xref ref-type="bibr" rid="B215">Taniguchi et&#xa0;al., 2010</xref>), <sup>[5]</sup>(<xref ref-type="bibr" rid="B89">Joo et&#xa0;al., 2005</xref>), <sup>[6]</sup>(<xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>), <sup>[7]</sup>(<xref ref-type="bibr" rid="B189">Sato et&#xa0;al., 2015</xref>), <sup>[8]</sup>(<xref ref-type="bibr" rid="B118">L&#xf6;fke et&#xa0;al., 2013</xref>), <sup>[9]</sup>(<xref ref-type="bibr" rid="B213">Takano et&#xa0;al., 1997</xref>), <sup>[10]</sup>(<xref ref-type="bibr" rid="B33">Dietrich et&#xa0;al., 2017</xref>), <sup>[11]</sup>(<xref ref-type="bibr" rid="B196">Shkolnik et&#xa0;al., 2016</xref>), <sup>[12]</sup>(<xref ref-type="bibr" rid="B93">Kaneyasu et&#xa0;al., 2007</xref>), <sup>[13]</sup>(<xref ref-type="bibr" rid="B138">Miao et&#xa0;al., 2018</xref>), <sup>[14]</sup>(<xref ref-type="bibr" rid="B190">Saucedo et&#xa0;al., 2012</xref>), <sup>[15]</sup>(<xref ref-type="bibr" rid="B181">Rowe et&#xa0;al., 2016</xref>), <sup>[16]</sup>(<xref ref-type="bibr" rid="B166">Pedmale et&#xa0;al., 2010</xref>), <sup>[17]</sup>(<xref ref-type="bibr" rid="B199">Silva-Navas et&#xa0;al., 2016</xref>), <sup>[18]</sup>(<xref ref-type="bibr" rid="B199">Silva-Navas et&#xa0;al., 2016</xref>), <sup>[19]</sup>(<xref ref-type="bibr" rid="B193">Shabala et&#xa0;al., 2015</xref>), <sup>[20]</sup>(<xref ref-type="bibr" rid="B173">Petrella et&#xa0;al., 2018</xref>), <sup>[21]</sup>(<xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>), <sup>[22]</sup>(<xref ref-type="bibr" rid="B151">Monshausen et&#xa0;al., 2009</xref>), <sup>[23]</sup>(<xref ref-type="bibr" rid="B114">Kurusu et&#xa0;al., 2013</xref>), <sup>[24]</sup>(<xref ref-type="bibr" rid="B122">Lee et&#xa0;al., 2020</xref>), <sup>[25]</sup>(<xref ref-type="bibr" rid="B240">Yamamoto et&#xa0;al., 2008</xref>), <sup>[26]</sup>(<xref ref-type="bibr" rid="B42">Eysholdt-Derzs&#xf3; and Sauter, 2017</xref>), <sup>[27]</sup>(<xref ref-type="bibr" rid="B180">Rodrigo-Moreno et&#xa0;al., 2017</xref>).</p>
<p>The compounds thought to be involved on the basis of little or only indirect evidence, or with controversy, are followed by a question mark.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3">
<title>Hydrotropism</title>
<p>Water acquisition is an important function of plant roots (<xref ref-type="bibr" rid="B145">Miyazawa et&#xa0;al., 2011</xref>). Because water availability in the soil is often spatially and temporally patchy, roots of many species can exert directional root growth toward water; i.e., hydrotropism. Even though hydrotropism has been described as early as 1887 (<xref ref-type="bibr" rid="B228">Von Sachs, 1887</xref>), the underlying mechanisms have not yet been fully elucidated (<xref ref-type="bibr" rid="B39">Eapen et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B195">Shkolnik and Fromm, 2016</xref>). One of the main reasons for this, is that gravitropism is often dominant over hydrotropic responses, making it difficult to study hydrotropism in isolation (<xref ref-type="bibr" rid="B211">Takahashi, 1997</xref>). The few reports published on hydrotropism in a natural environment have not observed a directional growth toward water where it was expected (<xref ref-type="bibr" rid="B127">Loomis and Ewan, 1936</xref>; <xref ref-type="bibr" rid="B27">Cole and Mahall, 2006</xref>). As <xref ref-type="bibr" rid="B210">Takahashi et&#xa0;al. (2009)</xref> proposes, this can be due to the balance between the influences of gravity and water being different between species. Hydrotropism has however been observed under lab conditions.</p>
<p>Hydrotropism appears not to function according to the Cholodny-Went theory, as no apparent changes in auxin distribution were observed in roots exhibiting hydrotropism (<xref ref-type="bibr" rid="B195">Shkolnik and Fromm, 2016</xref>; <xref ref-type="bibr" rid="B196">Shkolnik et&#xa0;al., 2016</xref>). Accordingly, pharmacologic application of auxin influx and efflux inhibitors did not affect hydrotropism, while it drastically decreased the root gravitropic responses (<xref ref-type="bibr" rid="B196">Shkolnik et&#xa0;al., 2016</xref>). However, application of the auxin antagonists &#x3b1;-(phenylethyl-2-one)-indole-3-acetic (PEO-IAA), auxinole, and the auxin response inhibitor PCIB gave contradicting results (<xref ref-type="bibr" rid="B93">Kaneyasu et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B196">Shkolnik et&#xa0;al., 2016</xref>). Possibly, components of auxin signaling are thus necessary, although hydrotropism may not depend on the establishment of an auxin gradient for differential growth <italic>per se</italic>.</p>
<p>Also contrary to the Cholodny-Went theory is the likely localization of both a hydrotropic sensor and response area in the EZ of <italic>Arabidopsis</italic> roots (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>). While <italic>de novo</italic> gene expression in columella cells is not necessary for hydrotropism, laser ablation of stories 1 and 2 of the columella cells did severely decrease the hydrotropic response (<xref ref-type="bibr" rid="B142">Miyazawa et&#xa0;al., 2008</xref>). In contrast, preventing <italic>de novo</italic> gene expression in TZ cells did suppress hydrotropic curvature (<xref ref-type="bibr" rid="B142">Miyazawa et&#xa0;al., 2008</xref>). In a later study, laser ablation of the root meristem and columella cells had however no effect on hydrotropism in <italic>Arabidopsis</italic> (<xref ref-type="bibr" rid="B33">Dietrich et&#xa0;al., 2017</xref>). Possibly, multiple sensory regions for water gradients are present in <italic>Arabidopsis</italic> with the EZ and TZ seeming prominently involved.</p>
<p>Several <italic>Arabidopsis</italic> mutations have been identified that cause attenuation of the hydrotropic response; no hydrotropic response 1 (nhr1), mizu-kussei 1 (miz1), mizu-kussei 2 (miz2), and altered hydrotropic response 1 (ahr1) (<xref ref-type="bibr" rid="B38">Eapen et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B107">Kobayashi et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B143">Miyazawa et&#xa0;al., 2009a</xref>; <xref ref-type="bibr" rid="B190">Saucedo et&#xa0;al., 2012</xref>). The miz1 and miz2 mutants may be specifically disturbed in hydrotropic functioning, as they exhibited a normal response to gravity, and a wild type-like root cap organization. The highly conserved MIZ1 protein is likely located at the cytosolic side of the ER of columella cells and lateral root cap, as well as the TZ, but its molecular function remains unknown (<xref ref-type="bibr" rid="B241">Yamazaki et&#xa0;al., 2012</xref>). As miz1 roots show increased levels of auxin, it is thought that MIZ1 has a role in reducing auxin levels (<xref ref-type="bibr" rid="B24">Cassab et&#xa0;al., 2013</xref>). This effect of MIZ1 indicates that auxin levels are regulated in hydrotropism, although not asymmetrically (<xref ref-type="bibr" rid="B34">Dietrich, 2018</xref>).</p>
<p>The <italic>miz2</italic> mutation was identified as a weak <italic>GNOM</italic> mutant allele, involved in facilitating membrane trafficking (<xref ref-type="bibr" rid="B68">Geldner et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B144">Miyazawa et&#xa0;al., 2009b</xref>). No change in PIN1 localization was observed in <italic>miz2</italic> mutants, even though the ADP ribosylation factor guanine-nucleotide exchange factor (ARF-GEF) GNOM functions in the continuous recycling of PIN1 (<xref ref-type="bibr" rid="B68">Geldner et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B144">Miyazawa et&#xa0;al., 2009b</xref>). It has, therefore, been proposed that the effect of GNOM on hydrotropism may be distinct from its role in auxin distribution (<xref ref-type="bibr" rid="B154">Moriwaki et&#xa0;al., 2014</xref>).</p>
<p>In contrast to <italic>miz1 and miz2</italic>, little is known about the <italic>ahr1</italic> mutant, which displays no hydrotropism when confronted with a water gradient. The root meristem and EZ length, cell cycle duration, and primary growth of <italic>arh1</italic> mutants are not decreased following hydrotropic stimulation, as is the case for the wild type (<xref ref-type="bibr" rid="B185">Salazar-Blas et&#xa0;al., 2017</xref>). Upon addition of cytokinins, normal hydrotropic growth was restored in <italic>arh1</italic> mutants, indicating a critical role for cytokinins in hydrotropism (<xref ref-type="bibr" rid="B190">Saucedo et&#xa0;al., 2012</xref>).</p>
<p>Recently, <xref ref-type="bibr" rid="B33">Dietrich et&#xa0;al. (2017)</xref> identified a critical role for two subclass III Snf1-related kinases (SnRK2s) in the response of <italic>Arabidopsis</italic> to hydrotropic stimuli. SnRK2s function upstream of transcription factors in abscisic acid (ABA) phytohormone signaling (<xref ref-type="bibr" rid="B29">Cutler et&#xa0;al., 2010</xref>). While high ABA levels decrease root elongation, at low water potential, low ABA levels increase elongation (<xref ref-type="bibr" rid="B181">Rowe et&#xa0;al., 2016</xref>). Specifically, SnRK2.2 and SnRK2.3 play critical roles, as the <italic>snrk2.2 snrk2.3</italic> double mutant displayed severely inhibited hydrotropism. Strikingly, <italic>SnRK2.2</italic> and <italic>MIZ1</italic> expression is only needed in the cortex of the TZ and EZ (<xref ref-type="bibr" rid="B33">Dietrich et&#xa0;al., 2017</xref>). These results hint to a central role for ABA levels in the elongation and transition zone of the root cortex during hydrotropism, independent from the root meristem. A detailed overview of the components involved in hydrotropism is found in <xref ref-type="bibr" rid="B24">Cassab et&#xa0;al. (2013)</xref>.</p>
<p>Using natural variation in hydrotropic responses among <italic>Arabidopsis</italic> accessions, <xref ref-type="bibr" rid="B138">Miao et&#xa0;al. (2018)</xref> identified H<sup>+</sup> efflux near the root tip as an indicator for hydrotropism. Increases in H<sub>2</sub>O<sub>2</sub> flux and Ca<sup>2+</sup> influx in the same root region during hydrotropism were only observed in the strongly hydrotropic Wassilewskija (Ws) accession. Transcriptomic analysis indicated an important role for brassinosteroids and epigenetic regulation in hydrotropism in this accession. Indeed, the strong hydrotropic response of Ws was reduced when brassinosteroid perception was partially deficient. Increased activity of brassinosteroid-activated plasma membrane H<sup>+</sup>-ATPases was likely linked to the increased H+ efflux of Ws during hydrotropism. Although an increase of brassinosteroid levels was assumed from the expression of a brassinosteroid biosynthesis control gene, the actual brassinosteroid levels, as well as the function and localization of H<sup>+</sup>, Ca<sup>2+</sup>, and ROS during hydrotropism remains to be investigated.</p>
<p>The plasma membrane-associated cation-binding protein 1 (PCaP1) potentially functions as a signaling hub in hydrotropism (<xref ref-type="bibr" rid="B214">Tanaka-Takada et&#xa0;al., 2019</xref>). This protein is capable of binding Ca<sup>2+</sup>, Ca<sup>2+</sup>/calmodulin, and PtdInsP<sub>2</sub> and is usually stably associated with the plasma membrane, despite that the protein lacks a transmembrane domain. During hydrotropism, PCaP1 localization in the EZ shifted to the cytoplasm. While hydrotropic bending is controlled in the EZ cortex, the change in PCaP1 localization is especially apparent in the endodermis (<xref ref-type="bibr" rid="B33">Dietrich et&#xa0;al., 2017</xref>). This position, combined with the initial membrane localization and the ability to bind Ca2+, points toward a potential central role in the hydrotropic signal transduction pathway. While it is also able to bind the InsP3 precursor PtdInsP<sub>2</sub>, no role for InsP<sub>3</sub> has been confirmed in hydrotropism. It is also possible that the InsP<sub>3</sub> binding capability represents a link to the gravitropic signaling mechanism, which needs to be suppressed before hydrotropic bending can take place.</p>
<p>Our understanding of hydrotropism is not as advanced as that of gravitropism, while significant interaction between the tropisms are apparent (<xref ref-type="bibr" rid="B212">Takahashi, 2003</xref>). One of the remaining open questions is how asymmetric signals are formed in the root in response to water patchiness and how these signals are transduced. The natural variation in hydrotropic competence of <italic>Arabidopsis</italic> accessions provide a valuable resource for hydrotropism research, in addition to the four known hydrotropic mutants (<xref ref-type="bibr" rid="B138">Miao et&#xa0;al., 2018</xref>). Additionally, experiments in space allow for the investigation of hydrotropic signaling without the interference from gravitropism.</p>
</sec>
<sec id="s4">
<title>Phototropism</title>
<p>Plants evolved the ability to sense&#x2014;and respond to&#x2014;different characteristics of light, such as quantity, quality, duration (photoperiod), and direction, which is mediated by specialized photoreceptor proteins (<xref ref-type="bibr" rid="B63">Galv&#xe3;o and Fankhauser, 2015</xref>). Shoots and/or leaves of many plant species can optimize the amount of energy perceived through directional growth when exposed to non-uniform light conditions; called phototropism (<xref ref-type="bibr" rid="B126">Liscum et&#xa0;al., 2014</xref>). Already in the nineteenth century it was recognized that roots of some species grow away from light, while others grow toward the light (<xref ref-type="bibr" rid="B227">Von Sachs, 1868</xref>). The first response is known as negative phototropism, the second as positive phototropism.</p>
<p>Light conditions perceived in the shoot can also influence root growth and development <italic>via</italic> e.g., the master photomorphogenesis repressor COP1, influencing root apical meristem proliferation through modulation of PIN1 and PIN2 distribution (<xref ref-type="bibr" rid="B188">Sassi et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B223">van Gelderen et&#xa0;al., 2018</xref>). Roots can be exposed to light directly as well, despite their underground localization. Not only can light penetrate up to a few centimeters in the upper layers of some soils (<xref ref-type="bibr" rid="B134">Mandoli et&#xa0;al., 1990</xref>), the plant itself can also guide light through the stem to the roots due to the &#x201c;stem pipe effect&#x201d; (<xref ref-type="bibr" rid="B133">Mandoli et&#xa0;al., 1984</xref>; <xref ref-type="bibr" rid="B121">Lee et&#xa0;al., 2016</xref>). Aside from the above-mentioned phenomena, roots can also be exposed to light shortly after germination in the top layer of the soil or because cracks in the soil emerge that trigger a phototropic reaction. The precise evolutionary function of phototropism in roots is still under debate, although an increased root efficiency and enhanced seedling survival under dry conditions have been suggested as fitness benefits to the plant (<xref ref-type="bibr" rid="B60">Galen et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B115">Kutschera and Briggs, 2012</xref>).</p>
<p>Some of the principles and signaling pathways involved in the well-studied shoot phototropism responses also account for root responses to light (<xref ref-type="bibr" rid="B41">Esmon et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B19">Briggs, 2014</xref>). However, there are also clear differences, as for instance shoots, but not the roots, display distinctly different phototropic reactions to low fluence rate and high fluence rate light exposure (<xref ref-type="bibr" rid="B164">Parks et&#xa0;al., 2001</xref>). Moreover, the blue light photoreceptor PHOTOTROPIN2 (PHOT2/NPL1), important for high fluence light shoot phototropism, does not appear to be present in the root (<xref ref-type="bibr" rid="B183">Sakai et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B108">Kong et&#xa0;al., 2006</xref>). In addition, over 3,000 light-responsive genes are differentially expressed between hypocotyls and roots of <italic>Arabidopsis</italic> seedlings (<xref ref-type="bibr" rid="B130">Ma et&#xa0;al., 2005</xref>). A recent discussion of root and shoot phototropism in response to blue light is provided in <xref ref-type="bibr" rid="B155">Morrow et&#xa0;al. (2018)</xref>.</p>
<p>Roots of many species respond with positive or negative phototropic growth to red and blue light, while others are insensitive. Early studies demonstrated that roots of about half of the tested species (circa 292) did not react to unidirectional white light, while the other half showed negative phototropism, and only a handful of species displayed a positive response (<xref ref-type="bibr" rid="B81">Hubert and Funke, 1937</xref>; <xref ref-type="bibr" rid="B115">Kutschera and Briggs, 2012</xref>). Most recent work focused on <italic>Arabidopsis,</italic> which mainly displays a negative blue light root phototropism (<xref ref-type="bibr" rid="B248">Zhang et&#xa0;al., 2013</xref>). The difference between plant species could be caused by the absence or presence of a functional phototropic mechanism for a specific part of the light spectrum, by a different light intensity threshold, or by a difference in balance between responses to diverse tropistic stimuli. Roots of individuals of the same species likely react similarly to light stimuli. Still, <xref ref-type="bibr" rid="B115">Kutschera and Briggs (2012)</xref> noticed distinct groups of cress reacting with positive, negative or no phototropism. However, these seedlings were grown in hydroculture, which constitutes a potentially detrimental flooding-like condition (<xref ref-type="bibr" rid="B3">Ashraf, 2012</xref>; <xref ref-type="bibr" rid="B191">Sauter, 2013</xref>). Indeed, <xref ref-type="bibr" rid="B81">Hubert and Funke (1937)</xref> had already rearranged their experimental setup after noticing such damaging effects of hydroculture on roots and found no differences in phototropic response of different cress individuals.</p>
<p>Some researchers have advocated for interpreting the far more abundant negative tropistic reaction to light as a stress reaction (<xref ref-type="bibr" rid="B245">Yokawa et&#xa0;al., 2014</xref>). Negative phototropism combined with increased root growth would then constitute an &#x201c;escape tropism&#x201d; (<xref ref-type="bibr" rid="B244">Yokawa et&#xa0;al., 2013</xref>). As an increase in ROS is part of several stress responses, the increase of ROS in illuminated roots is seen as an indication that root illumination can be considered a stress condition, justifying the term &#x201c;escape tropism.&#x201d; However, ROS is also an important part of gravitropic signaling (<xref ref-type="bibr" rid="B113">Krieger et&#xa0;al., 2016</xref>). Therefore, the ROS increase under light could represent regular physiological phototropic signaling rather than a stress indicator.</p>
<p>Different light sensors and signaling pathways are in place that mediate blue light and red light phototropisms (BLPT, RLPT) (<xref ref-type="bibr" rid="B71">Goyal et&#xa0;al., 2013</xref>). PHOTOTROPIN1 (PHOT1/NPH1) is a sensor for BLPT in roots and is, in <italic>Arabidopsis</italic>, predominantly localized in the internal tissues of the EZ (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B125">Liscum and Briggs, 1995</xref>; <xref ref-type="bibr" rid="B20">Briggs and Christie, 2002</xref>). Upon blue light stimulation of <italic>Arabidopsis</italic> roots, PHOT1 is autophosphorylated at the plasma membrane and around 20% dissociates from the membrane (<xref ref-type="bibr" rid="B184">Sakamoto and Briggs, 2002</xref>; <xref ref-type="bibr" rid="B106">Knieb et&#xa0;al., 2004</xref>). In maize, only local root cap illumination is able to achieve white light-induced phototropic curvature in the EZ (<xref ref-type="bibr" rid="B156">Mullen et&#xa0;al., 2002</xref>). Therefore, it is possible that the expression pattern of phot1 is different in maize, or there is an unknown link between the root cap and PHOT1 in the EZ.</p>
<p>Despite the clear role for phototropins, the BLPT signaling cascade has not been fully elucidated. Following autophosphorylation, PHOT1 binds to PHYTOCHROME KINASE SUBSTRATE 1 (PKS1) together with ROOT PHOTOTROPISM2 (RTP2), a membrane-bound putative scaffolding protein (<xref ref-type="bibr" rid="B82">Inada et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B15">Boccalandro et&#xa0;al., 2008</xref>). NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3) is dephosphorylated by blue-light-activated PHOT1, which functions as a substrate adapter for a CULLIN3-based E3 ubiquitin ligase (CRL3) (<xref ref-type="bibr" rid="B165">Pedmale and Liscum, 2007</xref>; <xref ref-type="bibr" rid="B179">Roberts et&#xa0;al., 2011</xref>). Under low-intensity blue light, this CRL3-NPH3 complex mono- or multiubiquitinates PHOT1, which could be connected to PHOT1 dissociation from the plasma membrane (<xref ref-type="bibr" rid="B106">Knieb et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B179">Roberts et&#xa0;al., 2011</xref>). Under high-intensity blue light, PHOT1 is polyubiquitinated, marking it for 26S proteasome-mediated degradation. This likely functions as a mechanism of receptor desensitization (<xref ref-type="bibr" rid="B179">Roberts et&#xa0;al., 2011</xref>).</p>
<p>One prevalent model connected PHOT1 activation to asymmetrical PIN2 distribution through altered trafficking (<xref ref-type="bibr" rid="B229">Wan et&#xa0;al., 2012</xref>). In this model, NPH3 functions as a point of interaction for gravitropic and phototropic signaling, that influences PIN2 distribution. In addition, PIN3 polarization is influenced through a GNOM-dependent trafficking pathway (<xref ref-type="bibr" rid="B248">Zhang et&#xa0;al., 2013</xref>). By changing the polarity and symmetrical distributions of PIN2 and PIN3, BLPT could function according to the Cholodny-Went theory, through the generation of auxin asymmetry (<xref ref-type="bibr" rid="B166">Pedmale et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B249">Zhang et&#xa0;al., 2014</xref>). However, a recent study by <xref ref-type="bibr" rid="B96">Kimura et&#xa0;al. (2018)</xref> presented critical notes to this model. An asymmetrical increase in auxin was found on the illuminated side of the root, in agreement with some earlier studies (<xref ref-type="bibr" rid="B248">Zhang et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B249">Zhang et&#xa0;al., 2014</xref>). However, <xref ref-type="bibr" rid="B96">Kimura et&#xa0;al. (2018)</xref> attests that this is a gravitropic reaction following the initial phototropic bending. Due to the BLPT-driven reorientation of the root, gravitropism would be activated, generating auxin asymmetry and opposing phototropic curvature. Inhibition or attenuation of auxin production and transport using pharmacological and genetic experiments was also found to increase BLPT, as it obstructed gravitropism (<xref ref-type="bibr" rid="B96">Kimura et&#xa0;al., 2018</xref>). These results suggest that auxin asymmetry may not be necessary, but instead antagonistic for establishing phototropic curvature in the root.</p>
<p>One possible mechanism involved in phototropism is the increase of flavonols in the TZ of the illuminated side of the root (<xref ref-type="bibr" rid="B199">Silva-Navas et&#xa0;al., 2016</xref>). This establishment of an asymmetric gradient of flavonols (e.g., quercetin and kaempferol) affects auxin signaling, PLETHORA gradient, and superoxide radical content. The resulting reduction of cell proliferation in the illuminated side of the root then causes curvature. Furthermore, cytokinin could be involved through regulation of flavonol biosynthesis, as the cytokinin receptor <italic>cre1 ahk1</italic> double mutant displayed reduced BLPT and flavonol accumulation (<xref ref-type="bibr" rid="B199">Silva-Navas et&#xa0;al., 2016</xref>).</p>
<p>Recently, a previously unknown positive blue-light phototropic response was identified in <italic>Arabidopsis</italic> in a microgravity environment (<xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>). The response was only detectable at gravity levels below 0.3<italic>g</italic> and already attenuated around 0.1<italic>g</italic>. In addition, pre-treatment with 1 h of red light enhanced the positive blue light phototropism (<xref ref-type="bibr" rid="B101">Kiss et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>). As both the <italic>phyA</italic> and <italic>phyB</italic> mutants displayed wild type-like curvature, it is likely that another phytochrome is responsible for this red-light mediated enhancement (<xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>). Candidates include phyD and phyE, being both highly expressed in the root tip, with phyD also being expressed throughout the EZ (<xref ref-type="bibr" rid="B187">Salisbury et&#xa0;al., 2007</xref>).</p>
<p>In addition to blue light, <italic>Arabidopsis</italic> roots also respond to unilateral red light with positive tropistic curvature. For this positive red light phototherapy (RLPT) it is also necessary to attenuate gravitropism, either through rotation on a so called &#x201c;ROTATO&#x201d; feedback system, that keeps the root tip aligned with the gravity vector based on rotation after image processing and feedback, the use of a mutant (e.g., <italic>pgm1</italic>) or microgravity conditions (<xref ref-type="bibr" rid="B182">Ruppel et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B99">Kiss et&#xa0;al., 2003a</xref>; <xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>). Interestingly, positive RLPT has an inverse relationship with the strength of gravity, in contrast to the apparent 0.1&#x2013;0.3<italic>g</italic> threshold for positive BLPT (<xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>). Mutations in <italic>phyA</italic> and <italic>phyB</italic> only partially inhibited the RLPT response, indicating a possible additive effect of phyA and phyB in RLPT (<xref ref-type="bibr" rid="B100">Kiss et&#xa0;al., 2003b</xref>; <xref ref-type="bibr" rid="B101">Kiss et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>). The location of positive red-light phototropic curvature was found to be at the basal edge of the EZ (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B100">Kiss et&#xa0;al., 2003b</xref>). PKS1 is one of the few proteins known to be involved in the process (<xref ref-type="bibr" rid="B147">Molas and Kiss, 2008</xref>). Under red light exposure PKS1 expression is increased in a phyA-dependent manner (<xref ref-type="bibr" rid="B15">Boccalandro et&#xa0;al., 2008</xref>). However, experiments with <italic>phyA/B pks1</italic> double mutants indicate that the function of PKS1 in RLPT is separate from both phytochromes. In addition, overexpression of PKS1 led to negative curvature in response to unilateral red light (<xref ref-type="bibr" rid="B147">Molas and Kiss, 2008</xref>). Whether or not red-light phototropism functions according to the Cholodny-Went theory and how it interacts with blue light phototropism remains to be studied. Based on the latent periods, negative BLPT has been proposed as relatively stronger than positive RLPT, with gravitropism stronger than both (<xref ref-type="bibr" rid="B99">Kiss et&#xa0;al., 2003a</xref>; <xref ref-type="bibr" rid="B100">Kiss et&#xa0;al., 2003b</xref>). Positive BLPT was only detected in microgravity and would most likely be of similar strength to RLPT, based on the comparable latent periods (<xref ref-type="bibr" rid="B225">Vandenbrink et&#xa0;al., 2016</xref>).</p>
<p>The most pressing issue in the study of phototropism has become the basic signal asymmetry causing the growth asymmetry, due to the findings of <xref ref-type="bibr" rid="B96">Kimura et&#xa0;al. (2018)</xref>, which were critical of the assumed auxin driven explanation of phototropism. Flavonols and cytokinins provide a possible alternative signal gradient in this regard (<xref ref-type="bibr" rid="B199">Silva-Navas et&#xa0;al., 2016</xref>). While attenuation of gravitropism has provided insight in positive BLPT and positive RLPT in <italic>Arabidopsis</italic>, other species with higher phototropic competence would likely more suitable for experimentation on these subtle tropisms (<xref ref-type="bibr" rid="B81">Hubert and Funke, 1937</xref>).</p>
</sec>
<sec id="s5">
<title>Halotropism</title>
<p>High levels of salt are detrimental for growth in most plant species. Plants respond to high salinity by extrusion of salt ions, sequestration, changes in root system architecture, and halotropism (<xref ref-type="bibr" rid="B131">Maathuis et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B90">Julkowska and Testerink, 2015</xref>). When confronted with a NaCl gradient, <italic>Arabidopsis</italic> roots can change their growth direction (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). This does not seem to be due to osmotic effects, as roots did not bend in response to a non-ionic osmotic mannitol gradient as high as 400 mM (<xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>). In most species, halotropism is negative (i.e., away from the directional stimulus), however, also species with positive halotropism have been identified. The halophyte <italic>Bassia indica</italic> for instance, displayed increased horizontal root growth toward a higher salt concentration when confronted with a salt gradient (<xref ref-type="bibr" rid="B194">Shelef et&#xa0;al., 2010</xref>).</p>
<p>In order to display halotropism, gravitropic growth must be attenuated. For <italic>Arabidopsis,</italic> the halotropic threshold lies between 50 and 100 mM NaCl (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>). At higher concentrations, the suppression of gravitropism becomes dose-dependent, with 85% of wild-type seedlings showing agravitropic root growth at 150 mM NaCl (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). One proposed manner by which halotropism can override gravitropism is the degradation of amyloplasts in the columella (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). Without a gravity signal, PIN2 internalization and proteolysis could be suspended, allowing for halotropic signaling, which functions primarily through altered PIN2 trafficking as well (<xref ref-type="bibr" rid="B1">Abas et&#xa0;al., 2006</xref>). The salt stress induces increased clathrin-mediated endocytosis of PIN2 in the root tip (<xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B255">Zwiewka et&#xa0;al., 2015</xref>). If the root is presented with a NaCl gradient, PIN2 endocytosis increases more at the side of the root exposed to the higher NaCl concentration, which depends on phospholipase D&#x3b6;2 (PLD&#x3b6;2) (<xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>). Under NaCl stress, the asymmetrically increased internalization of PIN2 from the plasma membrane causes an asymmetric flow of auxin in the root, which causes halotropic bending.</p>
<p>The increased internalization leads to a decrease in PIN2 abundance at the plasma membrane under severe salt stress (150 mM NaCl) (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). At the same time, PIN2 transcript levels decrease in root cells, only to be restored 8 h later (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). Even though this restoration has no perceived influence on PIN2 abundance at the plasma membrane, it coincides with the onset of halotropic curvature. Modelling predicted that through PIN2 internalization an auxin level increase of only 12&#x2013;14% can be obtained at the non-stressed side of the root. This is well below the 30&#x2013;40% estimated from observations (<xref ref-type="bibr" rid="B222">van den Berg et&#xa0;al., 2016</xref>). Increased PIN2 endocytosis alone is therefore likely not sufficient to explain halotropic growth.</p>
<p>No NaCl sensor has been conclusively identified yet, and one possibility is that instead of a discrete sensor, biophysical alterations trigger halotropic growth. This could be in the form of changes in plasma membrane tension due to saline conditions, which are able to directly change the endocytic cycling of auxin transporters, among which PIN1 and PIN2 (<xref ref-type="bibr" rid="B255">Zwiewka et&#xa0;al., 2015</xref>). Alternatively, the SALT OVERLY SENSITIVE (SOS) pathway could play a significant role in sensing NaCl concentrations. The <italic>sos1-1, sos2-1, and sos3-1</italic> mutants showed stronger agravitropic growth than wild-type when grown in saline conditions, despite these lines exhibiting slower amyloplast degradation (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). Additionally, there was no <italic>PIN2</italic> transcript level decrease in <italic>sos1-1</italic> mutants as seen in wild-type <italic>Arabidopsis</italic> under salt stress (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>). The SOS pathway is therefore proposed to be critical for the early stages of halotropism.</p>
<p>Although involvement of auxin transporters other than PIN2 in halotropism has been suggested, only the effects of AUX1 and PIN1 have been corroborated experimentally. The auxin asymmetry generated by salt-induced increases in PIN2 internalization, combined with an asymmetric AUX1 pattern and a transient increase of PIN1 protein levels, could be sufficient in accounting for the total perceived auxin asymmetry (<xref ref-type="bibr" rid="B64">Galvan-Ampudia et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B222">van den Berg et&#xa0;al., 2016</xref>). Because the halotropic changes in AUX1 localization occur in the EZ and not near the root tip, it is possible that PIN2 is sufficient to explain the establishment of auxin asymmetry in halotropism. While in line with the Cholodny-Went theory, this would distinguish halotropism from the gravitropic PIN3 and PIN7-dependent establishment of auxin asymmetry (<xref ref-type="bibr" rid="B222">van den Berg et&#xa0;al., 2016</xref>).</p>
<p>
<xref ref-type="bibr" rid="B74">Han et&#xa0;al. (2017)</xref> suggested possible involvement of the ATP BINDING CASSETTE-B (ABCB) transporters, PROTEIN PHOSPHATASE 2A (PP2A), and flavonoids in an elaborated halotropism model. Of the ABCB transporters present in <italic>Arabidopsis</italic>, ABCB1, ABCB4, and ABCB19 are known to use ATP hydrolysis to perform active auxin transport and mutants are affected in tropistic reactions (<xref ref-type="bibr" rid="B168">Peer et&#xa0;al., 2011</xref>). PP2A activity is regulated by phosphatidic acid (PA), which is a product of PLD and central to PIN2 recycling (<xref ref-type="bibr" rid="B65">Gao et&#xa0;al., 2013</xref>). Therefore, it is possible that PP2A regulates halotropism by dephosphorylating ABCB's and/or PIN2 (<xref ref-type="bibr" rid="B74">Han et&#xa0;al., 2017</xref>). The potential involvement of flavonoids in halotropism is inferred from their capacity to prolongate auxin signals and possible inhibition of ABCB transporters (<xref ref-type="bibr" rid="B167">Peer and Murphy, 2007</xref>). In addition, flavonoid production increases under saline conditions (<xref ref-type="bibr" rid="B242">Yan et&#xa0;al., 2014</xref>). Recent investigations have also revealed an important role for light in modulating root halotropism. While for <italic>Arabidopsis</italic> halotropic growth in the dark is more pronounced, rough bluegrass (<italic>Poa trivialis</italic>) show no halotropism without blue light (<xref ref-type="bibr" rid="B245">Yokawa et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B173">Petrella et&#xa0;al., 2018</xref>).</p>
<p>Despite its recent characterization, substantial progress has been made regarding the functioning of halotropism. Two of the main challenge are the identification of the halotropic sensor and the role of the SOS pathway. There are also strong indications of a link between halotropism and light or phototropism. As seen in rough bluegrass, halotropism can be conditional on illumination. Flavonoids, of which production increases under salt stress, contain a subset of flavonols that form a gradient in phototropism. Salinity, especially when combined with high light intensity, is also connected to increased ROS production, which could be involved in the tropistic reactions to these stimuli (<xref ref-type="bibr" rid="B139">Miller et&#xa0;al., 2010</xref>). With the projected increase of droughts due to climate change, exploration and exploitation of the link between salt and light responses could prove valuable for improving drought tolerance of crop species.</p>
</sec>
<sec id="s6">
<title>Thigmotropism</title>
<p>Plant roots respond distinctly to touch signals, after encountering an obstacle in the soil (<xref ref-type="bibr" rid="B148">Monshausen and Gilroy, 2009</xref>). When plant roots encounter an obstacle in their growth path, the root first continues growing in the same direction, until slippage occurs when stored extension growth is released sideways. After the initial undirected slipping, the root produces a first bend in the basal end of the EZ, followed by a second bend in the TZ (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B136">Massa and Gilroy, 2003</xref>). This second bending occurs in the opposite direction to the first one, creating a step-like shape with the largest part of the EZ horizontal, but the root cap again vertically oriented. This allows the root to grow sideways, circumventing the obstacle, while at the same time the root cap stays in touch with the surface of the obstacle, providing continuous tactile information about the blockade (<xref ref-type="bibr" rid="B136">Massa and Gilroy, 2003</xref>).</p>
<p>When a root is touched once, it elicits a single Ca<sup>2+</sup> spike, while bending elicits a characteristic biphasic Ca<sup>2+</sup> response (<xref ref-type="bibr" rid="B151">Monshausen et&#xa0;al., 2009</xref>). While most, if not all, regions of the root are touch-sensitive, the root cap is considered the site where perceived mechanical signals lead to a thigmotropic reaction. Resting cytosolic Ca<sup>2+</sup> levels in root cap cells are lower than in other root cells, while touch stimulation of the cap elicits a higher Ca<sup>2+</sup> spike (<xref ref-type="bibr" rid="B123">Legu&#xe9; et&#xa0;al., 1997</xref>).</p>
<p>Recently, the thigmotropic response was shown to be dependent on asymmetrical auxin distribution (<xref ref-type="bibr" rid="B122">Lee et&#xa0;al., 2020</xref>). When touching an obstacle during vertical growth, the root bends and auxin accumulates at the concave or higher side of the root. This auxin asymmetry is likely mediated by PIN2 asymmetry near the root tip (<xref ref-type="bibr" rid="B122">Lee et&#xa0;al., 2020</xref>). As gravitropic auxin asymmetry would be the opposite of the one found for thigmotropism, it is necessary that gravitropism is attenuated. Possibly, this is achieved through the decrease of amyloplast sedimentation rates in columella cells. This decrease in sedimentation is stronger after touch stimulation of the root cap than after touch stimulation elsewhere in the root (<xref ref-type="bibr" rid="B136">Massa and Gilroy, 2003</xref>).</p>
<p>Although the root cap is considered the most likely location where thigmotropic signaling originates, determining the actual sensory mechanism presents a sizable challenge [for an overview of mechanoperception models, see: (<xref ref-type="bibr" rid="B43">Fasano et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B217">Telewski, 2006</xref>)]. Possible receptors are: MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE proteins (MscS), MID1-COMPLEMENTING ACTIVITY (MCA) proteins, Piezo proteins, and RECEPTOR-LIKE KINASES, that monitor cell wall tension (<xref ref-type="bibr" rid="B114">Kurusu et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B149">Monshausen and Haswell, 2013</xref>). MCA1, a stretch-activated Ca<sup>2+</sup> membrane channel protein, is a promising candidates as roots of <italic>mca1</italic>-null mutants are unable to penetrate a harder medium if allowed to grow on a softer medium first (<xref ref-type="bibr" rid="B157">Nakagawa et&#xa0;al., 2007</xref>). However, <italic>mca1</italic>-null mutants grown in harder medium from the start have a growth pattern and penetration ability similar to the wildtype (<xref ref-type="bibr" rid="B157">Nakagawa et&#xa0;al., 2007</xref>).</p>
<p>The signaling cascade connecting thigmotropic sensing to asymmetric PIN2 distribution is largely unknown, although several secondary messengers or cellular response candidates besides Ca<sup>2+</sup> have been proposed. Cell alkalization, reactive oxygen species (ROS), and ethylene are all involved in the signaling or modulation of thigmotropic reactions (<xref ref-type="bibr" rid="B240">Yamamoto et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B151">Monshausen et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B177">Ponce et&#xa0;al., 2017</xref>). The extracellular pH of epidermal cells of the EZ and DZ increased by up to three pH units when touched, with no clear refractory period. This pH change was accompanied by a simultaneous yet smaller cytosolic pH decrease (around 0.2). The pH change did not spread to adjacent cells (<xref ref-type="bibr" rid="B151">Monshausen et&#xa0;al., 2009</xref>). Upon touch, a short (1 to 2 min) burst in ROS production was also noted. Interestingly, this ROS production and the resulting thigmotropic bending is severely decreased in the hydrotropic <italic>ahr1</italic> mutant. These observations suggest that thigmotropism and hydrotropism (and possibly other tropistic signals) cross talk at the level of AHR1 (<xref ref-type="bibr" rid="B177">Ponce et&#xa0;al., 2017</xref>). Further characterization of the <italic>ahr1</italic> mutant can, therefore, be key to study the currently underexplored interactions between tropisms and their relative strengths.</p>
<p>Both the alkalization and the increase in ROS production are caused by the influx of Ca<sup>2+</sup> into the cell, possibly enhanced by release of Ca<sup>2+</sup> from intracellular stores (<xref ref-type="bibr" rid="B151">Monshausen et&#xa0;al., 2009</xref>). The slower amyloplast sedimentation rate in response to touch also indicates involvement of the columella cell cytoskeleton (<xref ref-type="bibr" rid="B136">Massa and Gilroy, 2003</xref>). Yet how these changes interact and cause the PIN2 asymmetry leading to thigmotropic bending or attenuate gravitropic signaling is not fully understood.</p>
<p>As mentioned, the gaseous phytohormone ethylene is important for thigmotropism (<xref ref-type="bibr" rid="B240">Yamamoto et&#xa0;al., 2008</xref>). Roots suddenly encountering a rigid medium produced less ethylene and were more likely to bend than controls grown in only soft medium. Indeed, content of the ethylene precursor 1-aminocyclopropane-1-carboxylic acid (ACC) was reduced in roots shortly after contact with the rigid medium. The resulting lower ethylene levels also softened the root tip, which could help the root slip or bend. In contrast, roots that did not bend displayed enhanced levels of ethylene and had harder root tips, presumably to allow for better medium penetration (<xref ref-type="bibr" rid="B240">Yamamoto et&#xa0;al., 2008</xref>). Ethylene could also be involved in counteracting the effects of gravitropic auxin redistribution, as it is known to decrease cell elongation in roots in darkness (<xref ref-type="bibr" rid="B120">Le et&#xa0;al., 2001</xref>).</p>
<p>With the thigmotropic response likely functioning according to the Cholodny-Went theory, the challenge now is tying together the molecular connections of the various signals involved in the asymmetrical distribution of PIN2 (<xref ref-type="bibr" rid="B122">Lee et&#xa0;al., 2020</xref>). Attenuation of the gravitropic influence on the auxin asymmetry in thigmotropism could function through decreased amyloplast sedimentation, although this hypothesis needs to be confirmed. It is thus possible that there are multiple ways of attenuating gravitropism in Cholodny-Went tropisms, with the proposed mechanism of amyloplast degradation in halotropism also targeting the gravitropism sensor (<xref ref-type="bibr" rid="B207">Sun et&#xa0;al., 2008</xref>).</p>
</sec>
<sec id="s7">
<title>Chemotropism</title>
<p>Various publications list chemotropism as one of the possible tropisms affecting root growth (<xref ref-type="bibr" rid="B39">Eapen et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B12">Bisgrove, 2008</xref>; <xref ref-type="bibr" rid="B6">Balu&#x161;ka et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B8">Barlow, 2010</xref>; <xref ref-type="bibr" rid="B77">Henke et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B110">Kordyum, 2014</xref>). The ability to induce changes in root growth toward or away from a chemical indeed could be considered a useful adaptation. For instance, nutrient-imposed redirection of root growth toward nutrient-rich parts of the soil can help in maximizing nutrient acquisition, especially in poor soils, while growing away from toxic compounds can help in tolerating poisonous soils. Directional growth toward nutrients has been the focus of most chemotropism research and has become the operational definition in most literature. However, in the strict definition, halotropism can be considered a chemotropic reaction as well.</p>
<p>Despite the intuitive importance of positive root chemotropism, only a handful of studies have presented experimental evidence for the existence of chemotropic mechanisms. Most recent studies into the nutrient acquisition strategy of plants focused on the establishment and developmental plasticity of root architecture (<xref ref-type="bibr" rid="B22">Campbell et&#xa0;al., 1991</xref>; <xref ref-type="bibr" rid="B117">L&#xf3;pez-Bucio et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B78">Hodge, 2004</xref>; <xref ref-type="bibr" rid="B160">Niu et&#xa0;al., 2013</xref>). <xref ref-type="bibr" rid="B48">Filleur et&#xa0;al. (2005)</xref> however showed that primary <italic>A. thaliana</italic> root angle was different between media with uniform sufficient (2 M) potassium and uniform low (0.05 M) potassium conditions. While this indicates that potassium has an effect on the direction of the primary root, the uniform exposure precludes it being a &#x201c;true chemotropic&#x201d; effect, but rather classifies it as a chemonastic movement (<xref ref-type="bibr" rid="B94">Kellermeier et&#xa0;al., 2014</xref>).</p>
<p>In addition to the positive <italic>vs</italic>. negative distinction in tropisms, <xref ref-type="bibr" rid="B47">Filippenko (2001)</xref> argues for a further division in active and passive tropistic reactions. An active chemotropic reaction for instance would be the sensing of a nutrient by the plant, followed by directional growth toward the nutrient. Passive chemotropic reactions includes responses to harmful heavy metals, because heavy metal salts such as cadmium nitrate [Cd(NO<sub>3</sub>)<sub>2</sub>] are not necessarily sensed by the plant but instead cause direct physical damage to the root cells or even necrosis, which results in a growth differential between the exposed and non-exposed sides of the root (<xref ref-type="bibr" rid="B76">Hasenstein and Evans, 1988</xref>; <xref ref-type="bibr" rid="B235">Wilkinson et&#xa0;al., 1991</xref>; <xref ref-type="bibr" rid="B47">Filippenko, 2001</xref>).</p>
<p>Concrete evidence for the influence of a differentially distributed nutrient on the directional growth of a primary root was provided more than a century ago by <xref ref-type="bibr" rid="B159">Newcombe and Rhodes (1904)</xref>. A positive bending response toward disodium phosphate (Na<sub>2</sub>HPO<sub>4</sub>) of the root tips of white lupin (<italic>Lupinus albus</italic>) was observed, at concentrations of 0.28%. Higher concentrations (1 or 1.5%) of disodium phosphate resulted in the same directional growth response, followed by root necrosis. Seemingly, not all species exhibit chemotropism in the same manner, as roots of <italic>Cucurbita pepo</italic> displayed no preferential bending when exposed to a directional disodium phosphate stimulus (<xref ref-type="bibr" rid="B159">Newcombe and Rhodes, 1904</xref>). Other experiments with potassium nitrate (KNO<sub>3</sub>), magnesium sulphate (MgSO<sub>4</sub>), and calcium nitrate [Ca(NO<sub>3</sub>)<sub>2</sub>] reported in the study failed to trigger a chemotropic reaction in both <italic>L. albus</italic> and <italic>C. pepo</italic>. However, this study was criticized by Gilroy and Masson (2008) for not constituting a &#x201c;robust chemotropic directional assay&#x201d; as there was no repositioning of the stimulus. The positive chemotropic effect of disodium phosphate is supported by a recent experiment, where it was elicited in carrot seedlings (<italic>Daucus carota</italic>) onboard the ISS (<xref ref-type="bibr" rid="B86">Izzo et&#xa0;al., 2019</xref>). When confronted with both a hydrotropic and chemotropic stimulus under microgravity conditions, the roots grew preferentially into the substrate containing disodium phosphate. On the ground, both stimuli were overruled by gravitropism (<xref ref-type="bibr" rid="B86">Izzo et&#xa0;al., 2019</xref>). To the best of our knowledge, there is no information available on the underlying mechanisms, or the possible involvement of signal molecules.</p>
</sec>
<sec id="s8">
<title>Magnetotropism</title>
<p>Magnetic fields both weaker and stronger than the geomagnetic field have distinct influences on plants (reviewed in <xref ref-type="bibr" rid="B132">Maffei, 2014</xref>). Research into magnetotropism departed as an experimental tool for elucidating the gravitropic mechanism (<xref ref-type="bibr" rid="B4">Audus, 1960</xref>; <xref ref-type="bibr" rid="B9">Belova and Lednev, 2000</xref>; <xref ref-type="bibr" rid="B62">Galland and Pazur, 2005</xref>). It became evident however, that a magnetic field itself could change the growth direction of primary roots and it was immediately presumed to function through the then already proposed starch-statolith hypothesis of gravitropism (<xref ref-type="bibr" rid="B4">Audus, 1960</xref>). Due to the markedly different magnetic properties of the amyloplasts compared to the surrounding cytoplasm and tissues, magnetic fields are able to redirect amyloplast sedimentation independent of the gravity vector. Magnetic fields thus can overcome gravitropism and the root is guided in the direction of magnetic attraction of the amyloplasts. This mechanism of magnetotropism has been corroborated by later research (<xref ref-type="bibr" rid="B116">Kuznetsov and Hasenstein, 1996</xref>; <xref ref-type="bibr" rid="B109">Kordyum et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B11">Bilyavska and Polishchuk, 2014</xref>). Interestingly, <xref ref-type="bibr" rid="B174">Pittman (1962</xref>, <xref ref-type="bibr" rid="B175">1970</xref>) has shown that roots of oat (<italic>Avena fatua</italic>) and bread wheat (<italic>Triticum aestivum</italic>) align in a magnetic north-south direction, both in the field and in laboratory conditions. The magnetotropism trait was even claimed to be inheritable through the cytoplasm in <italic>T. aestivum</italic> cultivar crosses (<xref ref-type="bibr" rid="B137">McKenzie and Pittman, 1980</xref>). However, studies on magnetotropism have been confined to the phenomenological level only. No alternative has been explored to the idea that magnetotropism is merely a manifestation of gravitropic response through the manipulation of amyloplast sedimentation. It is therefore arguably a tropism indistinguishable from gravitropism, apart from the stimulus by which it is elicited.</p>
</sec>
<sec id="s9">
<title>Electrotropism</title>
<p>Electric fields (EFs) are able to elicit bending responses in roots, which is called electrotropism (or galvanotropism). Most studies have been conducted with maize, which responds to EFs above a strength of 0.5 V/cm (<xref ref-type="bibr" rid="B203">Stenz and Weisenseel, 1993</xref>; <xref ref-type="bibr" rid="B230">Wawrecki and Zag&#xf3;rska-Marek, 2007</xref>). In response to an EF, a bidirectional curvature is formed simultaneously in the TZ and the EZ (<xref ref-type="fig" rid="f1">
<bold>Figure 1</bold>
</xref>) (<xref ref-type="bibr" rid="B237">Wolverton et&#xa0;al., 2000</xref>). Both curvatures take place on the side of the root closest to the anode. Still, because the TZ experiences stimulated growth, while in the EZ growth is inhibited, the bending occurs in opposite directions. The field strength threshold of the EZ response is around 10-fold higher than that of the TZ, while the curvature is up to four times weaker. This results in a stairs-like bidirectional curvature, with a clearly dominant response of the TZ (<xref ref-type="bibr" rid="B202">Stenz and Weisenseel, 1991</xref>; <xref ref-type="bibr" rid="B203">Stenz and Weisenseel, 1993</xref>; <xref ref-type="bibr" rid="B237">Wolverton et&#xa0;al., 2000</xref>). Root electrotropism in the few tested species is directed away from the anode and toward the cathode (<xref ref-type="bibr" rid="B202">Stenz and Weisenseel, 1991</xref>; <xref ref-type="bibr" rid="B237">Wolverton et&#xa0;al., 2000</xref>). As this aligned with the conventional current flow and therefore the direction of the electric field, the response can be called cathodal or negative electrotropism (i.e., growth away from the direction of the electrical stimulus).</p>
<p>Many practical problems have been encountered in the study of electrotropism and the underlying mechanisms are still unknown (<xref ref-type="bibr" rid="B230">Wawrecki and Zag&#xf3;rska-Marek, 2007</xref>). In early studies on maize, high strength EFs up to 63 V/cm were used (<xref ref-type="bibr" rid="B84">Ishikawa and Evans, 1990b</xref>). Serious damage on the anodal side of the root then causes the root to bend toward the anode in a seemingly positive electrotropism (<xref ref-type="bibr" rid="B203">Stenz and Weisenseel, 1993</xref>). Later research indicated that the threshold for damage-induced growth alteration lies at 2&#x2013;3 V/cm EF strength for maize, depending on the medium (<xref ref-type="bibr" rid="B202">Stenz and Weisenseel, 1991</xref>; <xref ref-type="bibr" rid="B203">Stenz and Weisenseel, 1993</xref>). This is not uniform across species, as cress (<italic>L. sativum</italic>) can withstand stronger EFs and Black gram (<italic>Vigna mungo</italic>) EFs up to 25 V/cm (<xref ref-type="bibr" rid="B202">Stenz and Weisenseel, 1991</xref>; <xref ref-type="bibr" rid="B237">Wolverton et&#xa0;al., 2000</xref>).</p>
<p>Similar to experiments with chemotropism, some studies indicated that electrotropism could be a combination of physical effects rather than a true adaptive growth response. For instance, damage to the root apical meristem (RAM) architecture causes formation of a new root cap just above the response threshold of 0.5 V/cm in maize (<xref ref-type="bibr" rid="B230">Wawrecki and Zag&#xf3;rska-Marek, 2007</xref>). At 1.0 V/cm root columella initials show decreased division rates, while accumulating starch granules (<xref ref-type="bibr" rid="B230">Wawrecki and Zag&#xf3;rska-Marek, 2007</xref>). This indicates that roots are being damaged, even when negative electrotropism is observed. <xref ref-type="bibr" rid="B237">Wolverton et&#xa0;al. (2000)</xref> also noted the similarity between the observed TZ hyperpolarization in electrotropism and during gravitropism (<xref ref-type="bibr" rid="B84">Ishikawa and Evans, 1990b</xref>). It is therefore possible that electrotropism is due to a combination of root damage and electrical/magneto stimulation of the gravitropic mechanism.</p>
</sec>
<sec id="s10">
<title>Thermotropism</title>
<p>Research into possible thermotropism i.e., redirection of growth in response to a temperature gradient, peaked around the turn of the twentieth century. While it was agreed on that the response varied between species, the evidence was often conflicting (<xref ref-type="bibr" rid="B21">Burwash, 1907</xref>; <xref ref-type="bibr" rid="B40">Eckerson, 1914</xref>; <xref ref-type="bibr" rid="B79">Hooker, 1914</xref>; <xref ref-type="bibr" rid="B53">Fortin and Poff, 1991</xref>). Almost all indications of thermotropism were of growth toward the warmer side, i.e., positive thermotropism. No consensus on the phenomenon was reached however, and a later publication from this period regarded thermotropism as merely a turgor-driven movement by differential permeability of root cells in different temperatures (<xref ref-type="bibr" rid="B40">Eckerson, 1914</xref>).</p>
<p>In 1990 the issue of thermotropism was considered again, providing new evidence for a true tropistic response to thermal gradients in maize (<xref ref-type="bibr" rid="B52">Fortin and Poff, 1990</xref>). The threshold for observable thermotropic curvature lies between a 0.5 and 1.4&#xb0;C/cm horizontal gradient. Maximal thermotropic curvature was obtained in maize under a 4.2&#xb0;C/cm gradient, with a 15&#xb0;C starting temperature. Curvature decreased at higher starting temperatures and was absent around 32&#xb0;C. Contrary to this pattern of curvature, root elongation rates increased continuously up to 26&#xb0;C (<xref ref-type="bibr" rid="B52">Fortin and Poff, 1990</xref>). If thermotropism is merely caused by differences in turgor driven growth experienced by opposite sides of the root, as suggested by <xref ref-type="bibr" rid="B40">Eckerson (1914)</xref>, it would have been expected to more closely follow the latter pattern instead (<xref ref-type="bibr" rid="B52">Fortin and Poff, 1990</xref>). Another publication by <xref ref-type="bibr" rid="B53">Fortin and Poff (1991)</xref> further investigated the phenomenon and found indications of a negative thermotropism, i.e., growth away from higher temperatures. Weaker temperature gradients were observed to decrease the maximum temperature at which curvature occurs, besides eliciting smaller angle changes. Thermotropic and gravitropic curvature cancelled each other out when maize roots were gravitropically stimulated (i.e., positioned horizontally) at 19&#xb0;C, while being exposed to a vertical thermal gradient of 2.6&#xb0;C/cm. Lower temperatures caused upward curvature of the root, while at higher temperatures gravitropism appeared dominant. With some thermal gradients, a small negative curvature was found at starting temperatures around 40&#xb0;C (<xref ref-type="bibr" rid="B53">Fortin and Poff, 1991</xref>). However, the mechanisms underlying thermotropism remain unknown.</p>
</sec>
<sec id="s11">
<title>Oxytropism</title>
<p>Debate on the existence of a tropism toward or away from oxygen, called oxytropism, has remained on the side-lines of tropism research despite promising results. Research on an aerotropism in response to various gasses peaked in the early 1900&#x2019;s (as reviewed in: <xref ref-type="bibr" rid="B178">Porterfield and Musgrave, 1998</xref>). No consensus had been reached on the phenomenon, as a large and systematic investigation by <xref ref-type="bibr" rid="B10">Bennett (1904)</xref> disproving aerotropism was challenged. Reports of atypical root growth during research on plants in space prompted Porterfield and Musgrave to revisit the possibility of oxytropism in an Earth-based root growth chamber with gas control, called a microrhizotron (<xref ref-type="bibr" rid="B178">Porterfield and Musgrave, 1998</xref>). To this end, wild type pea (<italic>Pisum sativum</italic>) and agravitropic (<italic>ageotropum</italic>) pea mutants were grown in a microrhizotron capable of establishing a 0.8 mmol/mol/mm O<sub>2</sub> gradient. Curvature of the roots away from the gravity vector and toward higher oxygen concentrations was found at all starting concentrations (26.3&#x2013;183.8 mmol/mol/mm O<sub>2</sub>) (<xref ref-type="bibr" rid="B178">Porterfield and Musgrave, 1998</xref>). Due to the adverse effect of low oxygen concentrations on root elongation, curvature was attenuated at starting concentrations below 131.3 mmol/mol/mm O<sub>2</sub>. While the wild type pea reached 40&#xb0; bending toward higher oxygen concentrations, the agravitropic mutant was able to reach a full 90&#xb0;. Despite these promising findings of positive oxytropism, there was no direct follow-up research. Recently however, both an ecological function as well as indications of the mechanism behind oxytropism have been reported for one notable species. Radicles emerging from seeds of the Amazonian floodplain tree <italic>Pseudobombax munguba</italic> grow upwards after germinating submerged in unaerated water (<xref ref-type="bibr" rid="B46">Ferreira et&#xa0;al., 2017</xref>). Amyloplasts were absent in these roots, which may be a mechanism to circumvent gravitropism. Aeration of the water column negates this effect, causing radicles with intact amyloplasts to curl and bend downwards. This bending reaction to hypoxia is likely of substantial adaptive value to the <italic>P. munguba</italic> tree seedlings in their search for oxygen when submerged (<xref ref-type="bibr" rid="B46">Ferreira et&#xa0;al., 2017</xref>).</p>
<p>
<xref ref-type="bibr" rid="B42">Eysholdt-Derzs&#xf3; and Sauter (2017)</xref> documented that hypoxia increased primary root deviations from the vertical in <italic>Arabidopsis</italic>. Under 2% O<sub>2</sub> concentrations, this deviation reached 38.7&#xb0; on average, while under 21% O<sub>2</sub> it was only 14&#xb0;. Subsequent experiments with mutants of the group VII ETHYLENE RESPONSE FACTORS (ERFVIIs) involved in flooding and hypoxia responses resulted in even more pronounced curvatures under hypoxia. Specifically, mutants of the ERFVII member RAP2.12 reached 70.4&#xb0; on average. RAP2.12 is stabilized under hypoxia and thought to inhibit hypoxic root bending. Higher auxin levels and lateral auxin asymmetries were detected in the roots of plants bending under hypoxia, pointing toward a mechanism obeying the Cholodny-Went theory. While a decrease of PIN2 protein abundance was also found, it was symmetrical. The authors hypothesize that this contributes to the elevation of auxin in the root tip and the exaggeration of bending (<xref ref-type="bibr" rid="B42">Eysholdt-Derzs&#xf3; and Sauter, 2017</xref>). Both the asymmetric auxin distribution and the decrease in PIN2 abundance could conceivably be guided by an oxygen gradient as stimulus for oxytropism.</p>
</sec>
<sec id="s12">
<title>Phonotropism</title>
<p>In recent years, attention for sound as a signal for plants has been increasing. For extensive discussions of the role of sound vibrations in plants, see <xref ref-type="bibr" rid="B141">Mishra et&#xa0;al. (2016)</xref> as well as <xref ref-type="bibr" rid="B91">Jung et&#xa0;al. (2018)</xref>.</p>
<p>
<xref ref-type="bibr" rid="B59">Gagliano (2013)</xref> proposed a model for sound production in plants involving active organelle movements amplified by the in-phase vibration of neighboring cells. She proposes that sound perception could potentially be achieved through deformation of the plasma membrane and subsequent opening of mechanosensitive (MS) channels. This model was formulated after the dual findings of directional root growth toward sounds and acoustic emission spikes (around 2 m/s) emanating from the <italic>Z. mays</italic> EZ (<xref ref-type="bibr" rid="B57">Gagliano et&#xa0;al., 2012</xref>). The directional growth was most noticeable upon 200 and 300 Hz unilateral stimulation of maize roots, with over 40% of roots growing toward the sound source (<xref ref-type="bibr" rid="B57">Gagliano et&#xa0;al., 2012</xref>). This reaction, termed phonotropism, was further investigated and K<sup>+</sup>, Ca<sup>2+</sup>, and superoxide were found to be involved (<xref ref-type="bibr" rid="B180">Rodrigo-Moreno et&#xa0;al., 2017</xref>).</p>
<p>
<italic>Arabidopsis</italic> seedlings formed shorter lateral roots under unilateral 200 Hz stimulation, likely due to increased K<sup>+</sup> leakage. Five minutes after the start of sound exposure, Ca<sup>2+</sup> levels increased in the pericycle. Pharmacological evidence indicates the involvement of both plasma membrane Ca<sup>2+</sup> channels and internal Ca<sup>2+</sup> release. Subsequent increases in superoxide production were negated by pharmacological inhibition of the plasma membrane Ca<sup>2+</sup> channels, suggesting an upstream function of Ca<sup>2+</sup> (<xref ref-type="bibr" rid="B180">Rodrigo-Moreno et&#xa0;al., 2017</xref>). While some potential secondary messengers for phonotropism have been identified, the ecological function, if any, is still uncertain. One hypothesis for the ecological relevance of phonotropism is long distance locating of water in soils. Preliminary results show that roots of pea (<italic>P. sativum</italic>) preferentially grow toward the sound of flowing water, which is not in contact with the soil (<xref ref-type="bibr" rid="B58">Gagliano et&#xa0;al., 2017</xref>). Attempts to reinforce these findings by playing recorded sound of flowing water were however confounded by potential interference of magnetic fields generated by the equipment (<xref ref-type="bibr" rid="B58">Gagliano et&#xa0;al., 2017</xref>).</p>
</sec>
<sec id="s13">
<title>Concluding Remarks</title>
<p>Root tropisms are critical for plants, as in nature roots are continuously&#x2014;and often simultaneously&#x2014;subjected to multiple stimuli of varying strengths and directions, to which they need to respond to optimize fitness. Note that the term &#x201c;tropism&#x201d; must be demarcated carefully, as demonstrated by the cases of chemotropism, electrotropism, and magnetotropism. Tropisms <italic>sensu stricto</italic> are a directional growth response to a directional stimulus. When damaging chemicals, electric- or magnetic fields are applied however, the growth reorientation is arguably not necessarily a growth response, but merely a direct result of inflicted damage. Further investigation on thermotropism, oxytropism, and phonotropism will have to determine if these growth responses are indeed <italic>bona fide</italic> tropisms and what the underlying (molecular) networks are that control these responses.</p>
<p>Crucial to future empirical investigation into tropisms and their and regulation will be the development of experimental tools that enable the study of a single tropism stimulus in isolation, without confounding effects of other environmental gradients of any kind that may elicit a tropistic response. The occurrence of unconfirmed or poorly characterized tropisms, including those stimulated by temperature and oxygen signals, may have significantly influenced the outcomes of published experiments. Caution should be taken therefore, as often no control for such stimuli was in place in published experiments. In addition, many researchers grow their plants on agar medium, with unidirectional light directly reaching the roots when investigating tropistic reactions (<xref ref-type="bibr" rid="B245">Yokawa et&#xa0;al., 2014</xref>). Although obviously practical, direct illumination of the roots is known to affect for instance root morphology, hormone reactions, stress response, and even shoot development (<xref ref-type="bibr" rid="B198">Silva-Navas et&#xa0;al., 2015</xref>). Covering the roots, for example by use of the &#x201c;D-root&#x201d; system should thus be considered for future experimentation on tropisms in order to mitigate confounding light effects (<xref ref-type="bibr" rid="B198">Silva-Navas et&#xa0;al., 2015</xref>).</p>
<p>While all tropisms are per definition the result of asymmetric alteration of growth, the initial sensory event of the stimulus varies notably; e.g., from starch filled amyloplasts to phytochromes. For most tropisms, the sensor(s) or even the general sensory tissue(s) are not known (<xref ref-type="table" rid="T1">
<bold>Table 1</bold>
</xref>). Between sensing and bending, diverse signal transduction mechanisms and effectors are in place that are partly shared among tropisms induced by diverse stimuli. As already noted by <xref ref-type="bibr" rid="B49">Firn and Myers (1989)</xref>, this presents a &#x201c;deceptive unity&#x201d; that is difficult to disentangle experimentally.</p>
<p>
<italic>Arabidopsis</italic> as model organism has proven valuable in the elucidation of several tropism signaling pathways and sensors. In addition, <italic>Arabidopsis</italic> presents significant and underexplored natural variation among accessions in tropistic competence, at least for hydrotropism and phototropism (<xref ref-type="bibr" rid="B200">Sindelar et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B224">Vandenbrink and Kiss, 2016</xref>; <xref ref-type="bibr" rid="B138">Miao et&#xa0;al., 2018</xref>). Exploration of genetic variation can be used in future experiments to elucidate the signal transduction pathways, through genetic analyses by e.g., quantitative trait locus analysis (QTL) or genome-wide association study (GWAS). Nevertheless, focusing on one species has as obvious disadvantage that the pronounced differences in tropisms that exist between species are easily overlooked. Systematic investigations remain therefore important to appreciate the full breadth of variation among species in sensing mechanism, sensor region, stimulus threshold, signaling mechanism, bending direction, and so on. One aspect of the study of root tropism that deserves more attention is the prevalence of tropisms in the natural environment. Apart from scattered examples from e.g., halotropism and oxytropism, there are very few studies examining tropisms outside of the lab environment (<xref ref-type="bibr" rid="B194">Shelef et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B46">Ferreira et&#xa0;al., 2017</xref>). While lab-based experiments are useful for investigating the molecular and physiological details of the responses, the question remains whether tropisms other than gravitropism play a substantial role in determining root growth direction in a natural setting. In the field, roots are subjected to several opportunities and constraints simultaneously, which all may contribute to the net tropistic response to a certain extent. This also includes allelopathic compounds and other exudates that may also influence parts of the signaling pathway of tropisms (<xref ref-type="bibr" rid="B128">Lupini et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B245">Yokawa et&#xa0;al., 2014</xref>). Better understanding of the natural occurrence of tropisms would also benefit the translation of lab observations on model species to agricultural field crops and crop improvement strategies (e.g., breeding) (<xref ref-type="bibr" rid="B31">de Dorlodot et&#xa0;al., 2007</xref>).</p>
<p>Future experiments on species-specific tropism regulation will benefit strongly from a microgravity environment where gravitropism, being a dominant tropism in many species, can be effectively eliminated. This will enable more detailed studies on weaker tropisms and could help to provide insight into the ecological function of other tropisms.</p>
<p>However, perhaps even more importantly, research on plant tropisms under microgravity environments is indispensable for future space programs. Biological life support systems will be necessary for far journeys into space and to supply moon or planet colonies, that require independent means of subsistence for the astronauts.</p>
<p>In this endeavor, understanding plant tropisms and their changes in a microgravity environment is critical (<xref ref-type="bibr" rid="B251">Zheng et&#xa0;al., 2015</xref>), as tropisms need to be controlled to guide the growth of plant roots (and shoots) in altered gravity. For this, knowledge on the &#x201c;gravitropism masking thresholds&#x201d; over other tropism and the interactions among tropisms need to be understood in more detail. Research on gravitropism in altered gravity environments has until now largely focused on perception. However, experiments investigating gravitropic signal transduction and response mechanisms are critical for understanding and manipulating root growth at different levels of gravity. After all, between the ISS or a spaceship (&#xb5;<italic>g</italic> range), the Moon (0.17<italic>g</italic>), Mars (0.38<italic>g</italic>), and Earth (1<italic>g</italic>), there are magnitude of order differences in the levels of gravity (<xref ref-type="bibr" rid="B102">Kiss, 2015</xref>). Without gravitropism dominating as on Earth, it becomes crucial to determine the relative strengths of the different tropisms, in order properly guide root growth by technological means. For example, by exposing roots in microgravity to blue light, they could be induced to develop away from light toward the growth medium. An alternative, particularly suited for reduced gravity environments, is the use of mutants or genome-edited lines with reduced bending responses to establish a more linear root growth, or with increased sensitivity to e.g., gravity. One approach could be to target <italic>WAVY GROWTH 2 (WAV2)</italic>, as WAV2 inhibits root tip rotation and thereby enhances linear growth (<xref ref-type="bibr" rid="B146">Mochizuki et&#xa0;al., 2005</xref>). This causes <italic>wav2</italic> mutants to respond to gravity, light, touch, and hydrotropic stimulation with a larger bending angle than wild type <italic>Arabidopsis</italic> (<xref ref-type="bibr" rid="B209">Takahashi et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B146">Mochizuki et&#xa0;al., 2005</xref>). In this framework, although the use of clinostats proved to be informative for certain parameters, findings will have to be validated in true microgravity environments, necessitating space-based research (<xref ref-type="bibr" rid="B197">Sievers and Hejnowics, 1992</xref>; <xref ref-type="bibr" rid="B80">Hoson et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B111">Kraft et&#xa0;al., 2000</xref>).</p>
<p>Complicating the investigation of tropisms in a microgravity environment such as the ISS, are the changes in plant growth caused by the absence of gravity, that are not related to gravitropism. These changes have for instance been revealed at the cellular and molecular level in biological systems in which tropisms cannot be defined, such as cultured cells <italic>in vitro</italic> (<xref ref-type="bibr" rid="B253">Zupanska et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B92">Kamal et&#xa0;al., 2018</xref>). Apart from changes in fundamental processes such as cell cycle regulation, ribosome biogenesis, and epigenetics, levels of cytokinin were also altered in microgravity (<xref ref-type="bibr" rid="B45">Ferl and Paul, 2016</xref>; <xref ref-type="bibr" rid="B92">Kamal et&#xa0;al., 2018</xref>). Additional spaceflight experiments have indicated the occurrence of many other substantial gene expression changes, with many differentially regulated genes connected to pathogen defense and cell wall reorganization (<xref ref-type="bibr" rid="B87">Johnson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B254">Zupanska et&#xa0;al., 2019</xref>). Part of these transcriptome changes could influence tropistic functioning as well, changing the behaviour of plant roots in response to stimuli in a space environment. A part of the &#x201c;spaceflight transcriptome&#x201d; is in fact dependent on the early gravitropic signaling component ARG1 (<xref ref-type="bibr" rid="B253">Zupanska et&#xa0;al., 2017</xref>). Moreover, the ARG1 paralog ARL2 is upregulated in gravitropism and downregulated in response to touch, indicating a complex molecular cross talk between microgravity adaptation and tropistic responses.</p>
<p>Despite several experiments have been performed on tropism interactions, knowledge about the localization of tropistic effects and the signals involved is far from complete (<xref ref-type="table" rid="T1">
<bold>Tables 1</bold>
</xref> and <xref ref-type="table" rid="T2">
<bold>2</bold>
</xref>). At the same time, identifying secondary messengers can lead to possible identification of new gradients able to establish tropistic bending. For example, ROS are implicated in gravitropism, hydrotropism, and thigmotropism, while also able to control the balance between cell proliferation and differentiation (<xref ref-type="bibr" rid="B220">Tsukagoshi et&#xa0;al., 2010</xref>). Similarly, flavonols, forming a gradient during negative phototropism, are able to influence auxin signaling, ROS content, and the meristem regulating PLETHORA protein gradient (<xref ref-type="bibr" rid="B61">Galinha et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B199">Silva-Navas et&#xa0;al., 2016</xref>). In this regard, the accumulated wealth of information from gene expression studies holds a potential for the identification of new, or shared, signaling components which could be pursued (<xref ref-type="bibr" rid="B95">Kimbrough et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B186">Salinas-Mondragon et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B205">Strohm et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B218">Toal et&#xa0;al., 2018</xref>). Other important prerequisites include information about the response ranges and their relation to stimulus strength combined with knowledge about the relative strength of tropisms when occurring simultaneously. Especially considering the need for compensation of gravitropism in microgravity conditions, better understanding of the interactions among tropisms is necessary.</p>
<p>Literally and figuratively back on Earth, the Cholodny-Went theory of differential auxin distribution still stands firm as the starting point into many investigations of tropisms, as it remains the dominant theory for explaining root tropisms, while nearing its 100-year anniversary. At the same time, however, it becomes increasingly clear that the Cholodny-Went theory is not generally applicable to all root tropism responses to diverse environmental stimuli. Future research therefore will have to refine the theory and further determine commonalities and differences in the molecular and physiological processes orchestrating root tropisms, before efficient translation to microgravity and reduced gravity situations can be made.</p>
</sec>
<sec id="s14">
<title>Author Contributions</title>
<p>LM, LI, and GA contributed conception and design of the review. LM organized the reference database and wrote the draft of the manuscript. LI, MZ, and GA contributed to manuscript writing and revision. LM and LI designed the figure and tables. All authors read and approved the submitted version and declare no competing interests.</p>
</sec>
<sec id="s15">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
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