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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2020.594758</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Fusion of a Novel Native Signal Peptide Enhanced the Secretion and Solubility of Bioactive Human Interferon Gamma Glycoproteins in <italic>Nicotiana benthamiana</italic> Using the <italic>Bamboo Mosaic Virus</italic>-Based Expression System</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Jiang</surname> <given-names>Min-Chao</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1029054/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Hu</surname> <given-names>Chung-Chi</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/325114/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Hsu</surname> <given-names>Wei-Li</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/802782/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Hsu</surname> <given-names>Tsui-Ling</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Lin</surname> <given-names>Na-Sheng</given-names></name>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/70355/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Hsu</surname> <given-names>Yau-Heiu</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/403655/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Ph.D. Program in Microbial Genomics, National Chung Hsing University and Academia Sinica</institution>, <addr-line>Taichung</addr-line>, <country>Taiwan</country></aff>
<aff id="aff2"><sup>2</sup><institution>Graduate Institute of Biotechnology, National Chung Hsing University</institution>, <addr-line>Taichung</addr-line>, <country>Taiwan</country></aff>
<aff id="aff3"><sup>3</sup><institution>Advanced Plant Biotechnology Center, National Chung Hsing University</institution>, <addr-line>Taichung</addr-line>, <country>Taiwan</country></aff>
<aff id="aff4"><sup>4</sup><institution>Graduate Institute of Microbiology and Public Health, College of Veterinary Medicine, National Chung Hsing University</institution>, <addr-line>Taichung</addr-line>, <country>Taiwan</country></aff>
<aff id="aff5"><sup>5</sup><institution>Genomics Research Center, Academia Sinica</institution>, <addr-line>Taipei</addr-line>, <country>Taiwan</country></aff>
<aff id="aff6"><sup>6</sup><institution>Institute of Plant and Microbial Biology, Academia Sinica</institution>, <addr-line>Taipei</addr-line>, <country>Taiwan</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Nobuyuki Matoba, University of Louisville, United States</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Hiroyuki Kajiura, Osaka University, Japan; Hugh S. Mason, Arizona State University, United States</p></fn>
<corresp id="c001">&#x002A;Correspondence: Yau-Heiu Hsu, <email>yhhsu@nchu.edu.tw</email>; <email>yhhsu@dragon.nchu.edu.tw</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Plant Biotechnology, a section of the journal Frontiers in Plant Science</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>12</day>
<month>11</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<year>2020</year>
</pub-date>
<volume>11</volume>
<elocation-id>594758</elocation-id>
<history>
<date date-type="received">
<day>14</day>
<month>08</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>23</day>
<month>10</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2020 Jiang, Hu, Hsu, Hsu, Lin and Hsu.</copyright-statement>
<copyright-year>2020</copyright-year>
<copyright-holder>Jiang, Hu, Hsu, Hsu, Lin and Hsu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Plant viruses may serve as expression vectors for the efficient production of pharmaceutical proteins in plants. However, the downstream processing and post-translational modifications of the target proteins remain the major challenges. We have previously developed an expression system derived from <italic>Bamboo mosaic virus</italic> (BaMV), designated pKB19, and demonstrated its applicability for the production of human mature interferon gamma (mIFN&#x03B3;) in <italic>Nicotiana benthamiana</italic>. In this study, we aimed to enhance the yields of soluble and secreted mIFN&#x03B3; through the incorporation of various plant-derived signal peptides. Furthermore, we analyzed the glycosylation patterns and the biological activity of the mIFN&#x03B3; expressed by the improved pKB19 expression system in <italic>N. benthamiana</italic>. The results revealed that the fusion of a native <italic>N. benthamiana</italic> extensin secretory signal (SS<sup>Ext</sup>) to the N-terminal of mIFN&#x03B3; (designated SS<sup>Ext</sup> mIFN&#x03B3;) led to the highest accumulation level of protein in intracellular (IC) or apoplast washing fluid (AWF) fractions of <italic>N. benthamiana</italic> leaf tissues. The addition of 10 units of &#x2018;Ser-Pro&#x2019; motifs of hydroxyproline-O-glycosylated peptides (HypGPs) at the C-terminal end of SS<sup>Ext</sup> mIFN&#x03B3; (designated SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>) increased the solubility to nearly 2.7- and 1.5-fold higher than those of mIFN&#x03B3; and SS<sup>Ext</sup> mIFN&#x03B3;, respectively. The purified soluble SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> protein was glycosylated with abundant complex-type N-glycan attached to residues N<sup>56</sup> and N<sup>128</sup>, and exhibited biological activity against <italic>Sindbis virus</italic> and <italic>Influenza virus</italic> replication in human cell culture systems. In addition, suspension cell cultures were established from transgenic <italic>N. benthamiana</italic>, which produced secreted SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> protein feasible for downstream processing. These results demonstrate the applicability of the BaMV-based vector systems as a useful alternative for the production of therapeutic proteins, through the incorporation of appropriate fusion tags.</p>
</abstract>
<kwd-group>
<kwd>interferon gamma</kwd>
<kwd>signal peptides</kwd>
<kwd>anti-virus activity</kwd>
<kwd>plant viral vector</kwd>
<kwd>glycosylation</kwd>
<kwd><italic>Bamboo mosaic virus</italic></kwd>
</kwd-group>
<contract-num rid="cn001">MOST-108-2313-B-005-004</contract-num>
<contract-num rid="cn002">AS-SUMMIT-109</contract-num>
<contract-sponsor id="cn001">Ministry of Science and Technology, Taiwan<named-content content-type="fundref-id">10.13039/501100004663</named-content></contract-sponsor>
<contract-sponsor id="cn002">Academia Sinica<named-content content-type="fundref-id">10.13039/501100001869</named-content></contract-sponsor>
<counts>
<fig-count count="6"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="75"/>
<page-count count="12"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1">
<title>Introduction</title>
<p>Plants have been developed recently as bioreactors for the industrial-scale production of therapeutic proteins, such as Elelyso<sup>&#x00AE;</sup> (&#x03B2;-glucocerebrosidase) (<xref ref-type="bibr" rid="B75">Zimran et al., 2015</xref>), ZMapp<sup>TM</sup> (Ebola monoclonal antibodies) (<xref ref-type="bibr" rid="B41">Olinger et al., 2012</xref>; <xref ref-type="bibr" rid="B10">Chen and Davis, 2016</xref>). Plant-made pharmaceuticals (PMPs) are regarded as safe, with relatively low production cost compared to mammalian systems, and also capable of performing eukaryotic post-translational modifications (PTM) required for biological activity and stability (<xref ref-type="bibr" rid="B46">Pogue et al., 2010</xref>; <xref ref-type="bibr" rid="B67">Xu et al., 2012</xref>; <xref ref-type="bibr" rid="B2">Bamogo et al., 2019</xref>; <xref ref-type="bibr" rid="B55">Schillberg et al., 2019</xref>). However, the relatively low yields and the difficulties in downstream processing of PMPs remain major challenges which limit the industrial or commercial acceptance of plant production systems (<xref ref-type="bibr" rid="B55">Schillberg et al., 2019</xref>).</p>
<p>To address the low yield issue, we have previously developed a <italic>Bamboo mosaic virus</italic> (BaMV)-based overexpression vector with the co-expression of a silencing suppressor P19, designated pKB19, which was shown to significantly increase the yield of a vaccine candidate in transgenic <italic>Nicotiana benthamiana</italic> suspension cell cultures (<xref ref-type="bibr" rid="B39">Muthamilselvan et al., 2016</xref>) or various forms of recombinant human interferon gamma (IFN&#x03B3;) proteins transiently expressed in inoculated <italic>N. benthamiana</italic> plants (<xref ref-type="bibr" rid="B30">Jiang et al., 2019</xref>). However, the downstream processing of the target proteins (TPs) is still challenging. The epitope-presenting chimeric BaMV virions were not designed to be secreted to the medium of the suspension cell cultures (<xref ref-type="bibr" rid="B39">Muthamilselvan et al., 2016</xref>), and had to be purified from the cultured biomass. On the other hand, although various strategies applied were effective in increasing the yields of dimeric (D) forms of recombinant interferon gamma IFN&#x03B3; proteins, such as mature IFN&#x03B3; (mIFN&#x03B3;) and mIFN&#x03B3;ER (mIFN&#x03B3; fused with ER retention signal) (<xref ref-type="bibr" rid="B30">Jiang et al., 2019</xref>), the lower solubility and lesser N-glycosylation level of the TPs limited their commercial applications as pharmaceuticals. The native human IFN&#x03B3; is a well-characterized secretory, dimeric glycoprotein (D glycoprotein) generated by the dimerization of two IFN&#x03B3; monomers with 0, 1, or 2 N-linked glycan each at the two potential glycosylation sites, residues N<sup>25</sup> and N<sup>97</sup> (<xref ref-type="bibr" rid="B54">Sareneva et al., 1994</xref>, <xref ref-type="bibr" rid="B53">1995</xref>). The N-glycosylation modification is also critical for the half-life of mIFN&#x03B3; in the bloodstream, affecting its therapeutic usefulness (<xref ref-type="bibr" rid="B22">Hooker and James, 1998</xref>; <xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>). It has been shown that the unglycosylated form of mIFN&#x03B3; monomers are prone to aggregation through the interactions of the hydrophobic domains, leading to lower solubility (<xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>) and adding more difficulties for downstream purification processes, such as denaturing and refolding (<xref ref-type="bibr" rid="B31">Jin et al., 2006</xref>; <xref ref-type="bibr" rid="B45">Petrov et al., 2010</xref>; <xref ref-type="bibr" rid="B49">Razaghi et al., 2017a</xref>). Thus, further improvement of the BaMV-based expression system is required for industrial applications.</p>
<p>One of the solutions to the aggregation and glycosylation problems is through the attachment of secretory signals (SSs), guiding TPs along the secretory pathway to extracellular (or apoplast) space, which may simplify the purification process with a higher amount of soluble glycoproteins (<xref ref-type="bibr" rid="B15">Faye et al., 2005</xref>; <xref ref-type="bibr" rid="B56">Schneider et al., 2014</xref>). Various groups have developed specific SS peptides to improve yields of TP secretion in plants (<xref ref-type="bibr" rid="B4">Becerra-Arteaga et al., 2006</xref>; <xref ref-type="bibr" rid="B69">Xu et al., 2007</xref>; <xref ref-type="bibr" rid="B5">Benchabane et al., 2009</xref>; <xref ref-type="bibr" rid="B26">Huang et al., 2015</xref>; <xref ref-type="bibr" rid="B37">Molino et al., 2018</xref>). By selecting a specific SS for host species, it has been shown that there could be a 10-fold increase in secretion efficiency of the TPs (<xref ref-type="bibr" rid="B26">Huang et al., 2015</xref>; <xref ref-type="bibr" rid="B37">Molino et al., 2018</xref>). A glycomodule signal peptide, hydroxyproline (Hyp)-O-glycosylated peptide (HypGP) composed of repeated &#x2018;Ser-Pro&#x2019; (SP) or &#x2018;Ala-Pro&#x2019; (AP) motif, has been demonstrated to facilitate efficient secretion of many fusion proteins (e.g., IFN&#x03B1;2-(SP)<sub>10,</sub> human growth hormone GH-(SP)<sub>10</sub>, (SP)<sub>32</sub>-Enhanced green fluorescent protein (EGFP) and human protease inhibitor &#x03B1;1-antitrypsin (AAT)-(AP)<sub>20</sub>) into extracellular space, and dramatically increased yields of TPs in plant cell culture systems (<xref ref-type="bibr" rid="B69">Xu et al., 2007</xref>, <xref ref-type="bibr" rid="B68">2010</xref>; <xref ref-type="bibr" rid="B71">Zhang et al., 2016</xref>, <xref ref-type="bibr" rid="B72">2019a</xref>). Thus, through fusion of various designer signal peptides to TPs, it is possible to establish a whole-plant or suspension cell culture system to achieve industry-scale and continuous production of valuable therapeutic proteins. However, the efficiencies of the SSs were known to vary widely in different systems, and should be verified for different TPs expressed by various vectors in different plants (<xref ref-type="bibr" rid="B4">Becerra-Arteaga et al., 2006</xref>; <xref ref-type="bibr" rid="B26">Huang et al., 2015</xref>; <xref ref-type="bibr" rid="B71">Zhang et al., 2016</xref>; <xref ref-type="bibr" rid="B37">Molino et al., 2018</xref>). It is also worth noting that, although <italic>N. benthamiana</italic> has been extensively used as the model plant system for the production of pharmaceutical proteins, no native signal peptides derived from <italic>N. benthamiana</italic> have been used for the aforementioned purposes in previous studies.</p>
<p>In this study, we aimed to further improve the BaMV-based protein expression system by the incorporation of various plant SSs together with the fusion of secretion booster, (SP)<sub>10</sub> signal. It was revealed that the fusion of a novel, native SS derived from <italic>N. benthamiana</italic> extensin protein (SS<sup>Ext</sup>) significantly enhanced the solubility, glycosylation, and secretion of the TP, mIFN&#x03B3; in <italic>N. benthamiana</italic>. In addition, we analyzed the glycosylation modification patterns and verified the biological activity of the fusion proteins. The results revealed that the recombinant IFN&#x03B3;, namely SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, expressed by the BaMV-based vector in <italic>N. benthamiana</italic> was glycosylated and exhibited anti-viral activity against <italic>Sindbis virus</italic> (SINV) and <italic>Influenza A virus</italic> (IAV). Furthermore, a suspension cell culture system was established using transgenic <italic>N. benthamiana</italic> for the efficient production of secreted SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>.</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="S2.SS1">
<title>Construction of Recombinant Expression Plasmids</title>
<p>A previously constructed BaMV expression vector, pKB19mIFN&#x03B3; (<xref ref-type="bibr" rid="B30">Jiang et al., 2019</xref>), containing BaMV RNA-dependent RNA polymerase (RdRp), silencing suppressor P19 (519 bp, GeneBank accession no <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="AJ288926">AJ288926</ext-link>), human mIFN&#x03B3; (GenBank accession no. <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="AY121833.1">AY121833.1</ext-link>) and 6X His-tag under the control of a dual constitutive 35S promoter of CaMV and a nopaline synthase (nos) terminator was used as the starting material for all constructs and also served as the control in the following analyses. It has been reported that fusion of plant-derived SS to N-terminus of TP could TP into secretory pathway and thereby leads to production of secretion protein (<xref ref-type="bibr" rid="B15">Faye et al., 2005</xref>; <xref ref-type="bibr" rid="B5">Benchabane et al., 2009</xref>). Thus, the strategy was tested on the BaMV-based vector system in this study. Five different plant derived SSs were chosen, including SS<sup>Ext</sup> from <italic>N. benthamiana</italic> extensin domain (unknown protein IPR006706 in <italic>N. benthamiana</italic> Genome v1.0.1 predicted cDNA), SS<sup><italic>Ramy</italic></sup> from <italic>Oryza sativa</italic> alpha-Amylase (GenBank Accession No. <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="M59351">M59351</ext-link>), SS<sup><italic>Pr1</italic></sup> from <italic>N. benthamiana</italic> pathogenesis related protein 1 (GenBank Accession No.: <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="JN247448">JN247448</ext-link>), SS<sup><italic>Vsp</italic></sup> from <italic>Glycine max</italic> vegetative storage protein (GenBank Accession No. <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="NC038243">NC038243</ext-link>), and SS<sup><italic>PDI</italic></sup> from <italic>Medicago sativa</italic> protein disulphide isomerase (GenBank Accession No. <ext-link ext-link-type="DDBJ/EMBL/GenBank" xlink:href="NC016409">NC016409</ext-link>) (<xref ref-type="bibr" rid="B5">Benchabane et al., 2009</xref>) were constructed by primer extensin of two mutually complementary primer oligonucleotides as listed in <xref ref-type="supplementary-material" rid="TS1">Supplementary Table 1</xref>, followed by digestion with <italic>Mlu</italic>I. The digestion products were cloned into pKB19mIFN&#x03B3; to generate the recombinant plasmid pKB19SS<sup>Ext</sup> mIFN&#x03B3;, pKB19SS<sup><italic>Ramy</italic></sup>mIFN&#x03B3;, pKB19SS<sup><italic>Pr1</italic></sup>mIFN&#x03B3;, pKB19SS<sup><italic>Vsp</italic></sup>mIFN&#x03B3;, and pKB19SS<sup><italic>PDI</italic></sup>mIFN&#x03B3;, as shown in <xref ref-type="fig" rid="F1">Figure 1A</xref>.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>Effects of plant-derived signal peptides on production of mIFN&#x03B3; glycoproteins in <italic>N. benthamiana</italic> plants. <bold>(A)</bold> Schematic representation of BaMV-based secretory expression cassettes for high-level protein production, secretion and glycosylation. The N-terminus of mIFN&#x03B3; was fused with one of five different species of plant-derived signal peptides (SS<sup>Ext</sup>, SS<sup><italic>R</italic><italic>amy</italic></sup>, SS<sup><italic>Pr1</italic></sup>, SS<sup><italic>Vsp</italic></sup> and SS<sup><italic>PDI</italic></sup>) as expressed using a BaMV-based vector, pKB19. The open reading frames of this viral vector encode RNA-dependent RNA polymerase (RdRP, 155K) and RNA silencing suppressor P19 from <italic>Tobacco bushy stunt virus</italic> under the control of a dual 35S promoter and a nopaline synthase (<italic>nos</italic>) terminator. <bold>(B)</bold> Analysis of target protein (TP) expression in inoculated leaves at 5 days post-infection (DPI). The <italic>N. benthamiana</italic> leaf exacts were separated into intracellular (IC) and apoplast washing fluid (AWF) fractions, and subsequently analyzed by electrophoresis through a 12% polyacrylamide gel containing 0.1% SDS (SDS&#x2013;PAGE), followed by staining with Coomassie Blue stain (CBS) and immunoblot (IB) analysis with mIFN&#x03B3;-specific antibodies. M, marker; pKn, vector only; P, positive control, purified mIFN&#x03B3; protein derived from <italic>E. coli</italic> (100 ng in CBS and 20 ng in IB) and prepared in TAE buffer; M&#x03B3;, M mIFN&#x03B3;; 1N-MG, M monoglycosylated mIFN&#x03B3;; 2N-MG, M diglycosylated mIFN&#x03B3;; MSS, M unprocessed SSmIFN&#x03B3;; DG, D Glyco-mIFN&#x03B3;. <bold>(C)</bold> ELISA quantification of mIFN&#x03B3; levels relative to fresh weight (FW) of leaves (mg/kg) in IC and AWF fractions of infiltrated leaves at 5 DPI. Statistical analysis was performed using one-way analysis of variance (one-way ANOVA) with Tukey&#x2019;s <italic>post-hoc</italic> multiple comparison analysis. The <italic>P</italic>-value of &#x003C; 0.001 was considered significantly different, as denoted by different letters. <bold>(D)</bold> Northern blot analysis of wild-type or chimeric BaMV RNA in infiltrated leaves at 5 DPI. BaMV genomic RNA and the subgenomic RNAs for triple gene block proteins (TGPsgRNA) and CP (CPsgRNA) were detected with a BaMV-specific probe, respectively. The bottom panel shows the amount of rRNA in each sample, stained with Ethidium bromide (EtBr) as the loading control.</p></caption>
<graphic xlink:href="fpls-11-594758-g001.tif"/>
</fig>
<p>It has been reported that the fusion of a designer HypGP tag composed of ten Ser-Pro dipeptide repeat, (SP)<sub>10</sub> to the C-terminus of TP leads to dramatically enhanced efficiency of protein secretion in plant cell culture media (<xref ref-type="bibr" rid="B69">Xu et al., 2007</xref>, <xref ref-type="bibr" rid="B68">2010</xref>; <xref ref-type="bibr" rid="B47">Ramos-Martinez et al., 2017</xref>). Therefore, the strategy was also tested on the viral vector pKB19SS<sup>Ext</sup> mIFN&#x03B3; in our study. HypGP tag was constructed by primer extensin of two mutually complementary primer oligonucleotides, F-SP-<italic>Spe</italic>I and R-SP-<italic>Spe</italic>I (<xref ref-type="supplementary-material" rid="TS1">Supplementary Table 1</xref>), followed by digestion with <italic>Spe</italic>I. The digested product was cloned into pKB19SS<sup>Ext</sup> mIFN&#x03B3; to generate the recombinant plasmid pKB19SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>. All constructs were confirmed by sequencing and transformed into <italic>A. tumefaciens</italic> strain pGV3850 via electroporation (<xref ref-type="bibr" rid="B70">Zambryski et al., 1983</xref>).</p>
</sec>
<sec id="S2.SS2">
<title>Transient Expression of TP in <italic>N. benthamiana</italic> Plants</title>
<p>Transient expression in <italic>N. benthamiana</italic> was performed by <italic>Agrobacterium</italic>-mediated infiltration. <italic>A. tumefaciens</italic> (PGV3850) clones harboring different constructs expressing TP were grown separately. <italic>A. tumefaciens</italic> cells were harvested by centrifugation at 12,000 rpm and resuspended in agro-infiltration buffer (10 mM MgCl<sub>2</sub> and 10 mM MES, pH 5.5) to achieve the appropriate optical density at 600 nm (OD<sub>600</sub>) for each construct. Then the culture was infiltrated into 6-week-old <italic>N. benthamiana</italic> plants (at the 5&#x2013;6 leaf stage) by the use of a 1 mL a needle-less syringe (OD<sub>600</sub> = 0.5) or vacuum-infiltration system (10<sup>&#x2013;1</sup> to 10<sup>&#x2013;2</sup> fold dilutions, of <italic>A. tumefaciens</italic> culture with OD<sub>600</sub> = 0.5). For vacuum-infiltration, a beaker containing inoculation solution was placed in a vacuum chamber (30 &#x00D7; 20 &#x00D7; 20 cm) with the aerial parts of a plant dipped into the inoculation solution. A vacuum of 25 to 30 mmHg was applied for 1 min. After breaking the vacuum, inoculation solution would be infiltrated immediately into all submerged <italic>N. benthamiana</italic> leaves. The infiltrated plants were maintained in the growth chamber at 28&#x00B0;C, with 16 h light/8 h dark intervals.</p>
</sec>
<sec id="S2.SS3">
<title>Isolation of TP in IC and AWF Fractions From Infiltrated <italic>N. benthamiana Leaves</italic></title>
<p>The proteins were isolated from IC and AWF TP fractions as described previously (<xref ref-type="bibr" rid="B1">Alkanaimsh et al., 2016</xref>). Agro-Infiltrated fresh leaves were harvested at 5 DPI and submerged in a harvest buffer, TBS-2 (20 mM Tris&#x2013;HCl, pH 8.0, 150 mM NaCl, 0.02% Silwet L-77) in a glass dish, and subsequently placed in a vacuum chamber for a 1 min vacuum application. The infiltrated leaves were transferred into 50 ml conical-bottom centrifuge tubes, and centrifuged for 15 min at 4&#x00B0;C at 2,500 rpm. The AWF fractions was recovered as the supernatants. One <italic>N. benthamiana</italic> leaf yields 300&#x2013;400 &#x03BC;l of AWF, which was subsequently 4-fold concentrated through acetone precipitation for silver staining or IB analysis.</p>
</sec>
<sec id="S2.SS4">
<title>Immunoblotting Assay</title>
<p>Total proteins were extracted from agro-infiltrated leaves at 5 DPI with 1:2.5 (w/v) protein extraction buffer (50 mM Tris&#x2013;HCl, pH 8.0, 10 mM KCl, 10 mM MgCl<sub>2</sub>, 1 mM EDTA, 20% glycerol, 2% SDS and 10% &#x03B2;-Mercaptoethanol). Extracted total proteins were separated by electrophoresis through a 12% polyacrylamide gel containing 0.1% SDS. The CBS and IB analysis with rabbit primary antibodies against mIFN&#x03B3; (1:5000 dilution) were used for the determination of TP expression levels of different BaMV-based vectors as described previously (<xref ref-type="bibr" rid="B30">Jiang et al., 2019</xref>).</p>
</sec>
<sec id="S2.SS5">
<title>Northern Blot Analysis</title>
<p>Total RNAs extracted from agro-infiltration leaves at 5 DPI were analyzed using the standard procedure as described (<xref ref-type="bibr" rid="B61">Verwoerd et al., 1989</xref>). The accumulation levels of BaMV and chimeric BaMV were hybridized with <sup>32</sup>P-labeled probes specific to (+)-strand BaMV RNA as described previously (<xref ref-type="bibr" rid="B28">Huang Y.W. et al., 2012</xref>).</p>
</sec>
<sec id="S2.SS6">
<title>Quantitative ELISA</title>
<p>For quantification of TP expression levels of different BaMV-based vectors, ELISA was performed as described previously (<xref ref-type="bibr" rid="B30">Jiang et al., 2019</xref>). TSP samples were prepared from inoculated leaves with 1:5 (w/v) ELSIA coating buffer (0.1 M carbonate/bicarbonate buffer, pH 9.6). Following centrifugation at 12,000 &#x00D7; <italic>g</italic> for 10 min, the supernatant was recovered and quantified for TSP using Bradford colorimetric assay (Sigma-Aldrich, St. Louis, MO, United States). The concentration of TSP in each sample was adjusted to approximately 5.5&#x2013;6.5 mg/mL and 0.8&#x2013;1.0 mg/mL in IC or AWF, respectively. The 96-well microtiter plates were coated with 5-fold serial dilutions of protein extracts from non-inoculated, inoculated leaves and purified plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> or purified mIFN&#x03B3; protein derived from <italic>E. coli</italic> for standard curve and the positive control. The concentration of TP was determined by comparison with known amounts of the purified mIFN&#x03B3; protein derived from <italic>E. coli.</italic> All measurements were performed in triplicates.</p>
</sec>
<sec id="S2.SS7">
<title>Isolation of Soluble SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> From <italic>N. benthamiana</italic> Extract Homogenates</title>
<p>To obtain soluble TP from <italic>N. benthamiana</italic> leaf homogenates, the vacuum-infiltrated leaves were harvested at 5 to 7 DPI and stored at &#x2212;80&#x00B0;C as described previously (<xref ref-type="bibr" rid="B24">Hsu et al., 2008</xref>). The frozen leaves (20 g) were shredded into small pieces and homogenized with a Polytron<sup>&#x00AE;</sup> homogenizer at 4&#x00B0;C in 40 ml of extraction buffer A [50 mM Tris&#x2013;HCl, pH 7.6, 15 mM MgCl<sub>2</sub> 120 mM KCl, 0.1% &#x03B2;-mercaptoethanol, 20% glycerol, 0.1 mM PMSF, one tablet of cOmplete, EDTA-free proteinase inhibitor cocktails (Roche Life Science, Penzberg, Germany)] (<xref ref-type="bibr" rid="B42">Osman and Buck, 1996</xref>). The homogenates were filtered through a layer of Miracloth and centrifuged at 1,000 &#x00D7; g for 10 min at 4&#x00B0;C to separate the pellet (P1) and supernatant (S1) fractions. The P1 contained cell wall, nuclei and chloroplasts of the homogenized cells. The S1 was further centrifuged at 30,000 &#x00D7; <italic>g</italic> for 30 min to separate the membranous (pellet, P30) and soluble (supernatant, S30) fractions. The P30 and S30 samples were subsequently brought to the same volume with protein sample buffer (containing 2% SDS) for CBS and IB analysis.</p>
</sec>
<sec id="S2.SS8">
<title>Removal of Chloroplasts in S30 Fraction</title>
<p>It has been reported that acetic acid precipitation may enable the removal of the abundant RuBisCO protein for purification of plant-derived protein (<xref ref-type="bibr" rid="B43">Park et al., 2015</xref>). The pH of S30 fraction was reduced to 5.1 by treating with ultrapure acetic acid. Then, samples were centrifuged at 30,000 &#x00D7; <italic>g</italic> for 30 min to separate the P30 and S30 fractions.</p>
</sec>
<sec id="S2.SS9">
<title>The Purification of <italic>N. benthamiana</italic> Expressed SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub></title>
<p>After removal of the abundant chloroplast proteins, the pH of soluble SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in S30 fraction was brought to 7.0 by the addition of 1M NaOH, and filtered through a 0.22 &#x03BC;m filter. To obtain pure SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, the filtrate was loaded on Ni<sup>2+</sup>-NTA column and the SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was captured, according to manufacturer&#x2019;s instructions. The collected eluates were further purified on a HiLoad<sup>TM</sup> 16/60 Superdex<sup>TM</sup> 200 pg (S200) column using a fast protein liquid chromatography (FPLC) system (AKTA Purifier GE Healthcare systems) at 4&#x00B0;C in S200 buffer (50 mM Tris&#x2013;HCl, pH 8.0, 200 mM NaCl, 5 mM &#x03B2;-Mercaptoethanol) following the manufacturer&#x2019;s instructions. The fractions containing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> were collected and concentrated using a Centricon filter (10 kDa NMWL, GE Healthcare, Chicago, IL, United States).</p>
</sec>
<sec id="S2.SS10">
<title>Glycosylation Analysis of Purified Soluble SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub></title>
<p>The purified plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, was glyco-stained using periodic acid-Schiff&#x2019;s reagent to investigate the glycan moieties, as described previously (<xref ref-type="bibr" rid="B14">Dubray and Bezard, 1982</xref>). The N-glycan state of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was examined by deglycosylation analysis using Peptide-N-Glycosidase A (PNGase A) (New England Biolabs, Ipswich, MA, United States) and Peptide-N-Glycosidase F (PNGase F) (New England Biolabs, Ipswich, MA, United States). The plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> (0.2 &#x03BC;g), purified from <italic>N. benthamiana</italic>, was denatured and subjected to digestion using 0.5&#x2013;5 units of PNGase A or PNGase F at 37&#x00B0;C for 48 h, as instructed by the manufacturer. One units is defined as the amount of enzyme required to remove &#x003E; 95% of the carbohydrate from 1 &#x03BC;g denatured recombinant glycoproteins in 1 h at 37&#x00B0;C.</p>
<p>For determining N-linked glycosylation sites, purified SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> protein (5 &#x03BC;g) was subjected to in-solution Tryptic/Lys-C digestion based on the filter-aided sample preparation (FASP) protocol reported previously (<xref ref-type="bibr" rid="B65">Wisniewski et al., 2009</xref>). The samples were loaded onto 10 kDa filter and treated with 40 &#x03BC;l of ammonium bicarbonate (ABC) with mass spec grade Trypsin/Lys-C (Promega, Madison, WI, United States) at an enzyme : protein ratio of 1:50 (wt/wt) for overnight at 37&#x00B0;C. Trypsin/Lys-C-digested peptide samples were heated at 95&#x00B0;C for 5 min to inactivate enzyme activity, followed by drying in a SpeedVac evaporator. The lyophilized samples were deglycosylated with or without PNGase A (10 unit, purchased from New England Biolabs, Ipswich, MA) for &#x223C;64 hour at 37&#x00B0;C to release the N-glycan. Released glycan were cleaned using C18 cartridges and further analyzed by LC-ESI-MS on a Orbitrap Fusion mass spectrometer (Thermo Fisher Scientific, San Jose, CA, United States) equipped with EASY-nLC 1200 system and EASY-spray source (Thermo Fisher Scientific, San Jose, CA, United States). The digested peptide samples (5 &#x03BC;l) were injected at a flow rate of 1 &#x03BC;l/min onto the column (C18, 0.075 mm X 150 mm, ID 3 &#x03BC;m; Thermo Fisher Scientific, San Jose, CA, United States). LC separation was performed using 0.1% formic acid in water as mobile phase A and 0.1% formic acid in 80% acetonitrile as mobile phase B, operated at a flow rate of 300 nl/min. The gradient employed was 5% buffer B at 2 min to 60% buffer B at 55 min. Full-scan MS condition: mass range m/z 375-1800 (AGC target 5E5) with lock mass, resolution 60,000 at m/z 200, and maximum injection time of 50 ms. The raw data files were processed by MSconvert (v3.0.19246) to generate the peak lists using default parameters. The peak lists were analyzed by Mascot (v2.2.06). The search options used in this study were the user-defined database (SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> protein sequences only), digestion enzyme trypsin, up to two missed cleavages, fragment ion mass tolerance of 0.6 Da and a parent ion tolerance of 3 ppm. Variable modifications were set to oxidation (M), and carbamidomethyl (C). Peptide ions were filtered using the cut-off score 15. The MS/MS was run in top speed mode with 3 s cycles with CID and HCD; while the dynamic exclusion duration was set to 60 s with a 10 ppm tolerance around the selected precursor and its isotopes. Electrospray voltage was maintained at 1.8 kV and capillary temperature was set at 275&#x00B0;C. For assignment of glycopeptides, the measured m/z values were used to search against a database that combines predicted tryptic peptides (by Protein Digest Simulator Basic) and N-linked glycan (from Consortium for Functional Glycomics) by in-house software (<xref ref-type="bibr" rid="B35">Liu et al., 2011</xref>). The assigned glycopeptides were manually confirmed by the appearance of glycan fragments in MS/MS spectra (<xref ref-type="bibr" rid="B35">Liu et al., 2011</xref>).</p>
</sec>
<sec id="S2.SS11">
<title>Recombinant <italic>Sindbis Virus</italic> Infection and IFN&#x03B3; Treatment</title>
<p>Recombinant <italic>Sindbis virus</italic> (SINV-eGFP) containing an enhanced green fluorescent protein (eGFP) expression cassette was kindly provided by Lih-Hwa Hwang (Graduate Institute of Microbiology and Immunology, National Yang Ming University, Taipei, Taiwan) (<xref ref-type="bibr" rid="B27">Huang P.Y. et al., 2012</xref>). In order to test the effect of human IFN&#x03B3; (hIFN&#x03B3;) against recombinant SINV-eGFP infection, the HEK 293T cells (2.5 &#x00D7; 10<sup>5</sup>) were seeded in 24-well plate. At 8 h after seeding, the cells were washed twice with PBS and then treated with either DMEM (Mock), the extract from <italic>N. benthamiana</italic> healthy leaves as the negative control (N), or a series of concentrations of PC-IFN&#x03B3; (R&#x0026;D Systems, Inc., MPLS, United States) as well as SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> for 12 h at 37 &#x00B0;C with 5% CO<sub>2</sub>. Subsequently, cell monolayer was infected with SINV-eGFP virus at a multiplicity of infection (M.O.I) of 1.0. The infected cells were collected at 24 h post-infection (hpi). The levels of eGFP signals and viral proteins were determined by fluorescence microscope observation and IB analysis with rabbit primary antibodies against eGFP, respectively.</p>
</sec>
<sec id="S2.SS12">
<title><italic>Influenza Virus</italic> Infection and Interferon Gamma Treatment</title>
<p><italic>Influenza virus</italic> subtype H1N1, strain A/Puerto Rico/8/34 (PR8) was kindly provided by Paul Digard (University of Edinburgh, United Kingdom). In order to test the activity of hIFN&#x03B3; against PR8 (H1N1), MDCK cells (4 &#x00D7; 10<sup>4</sup>/well) were seeded in 24-well plate for 8 h prior to treatment. Cells were washed twice with PBS and treated with DMEM, the extracts of <italic>N. benthamiana</italic> healthy leaves (N), or various concentrations of PC-IFN&#x03B3; and SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>. After 12 h incubation, cell monolayer was infected with PR8 at an M.O.I of 1.0 for 24 hpi. The accumulation level of PR8 viral proteins NS1 and NP were determined by IB analysis with mouse primary antibodies against actin (1:2500 dilution), or chicken primary antibodies against NS1 or NP (1:2500 dilution).</p>
</sec>
<sec id="S2.SS13">
<title><italic>N. benthamiana</italic> Suspension Cells Culture</title>
<p>Leaf disks of <italic>N. benthamiana</italic> were transformed with <italic>A. tumefaciens</italic> harboring pKB19mIFN&#x03B3; and pKB19SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> constructs (<xref ref-type="fig" rid="F2">Figure 2A</xref>) to generate transgenic <italic>N. benthamiana</italic> plants as described previously (<xref ref-type="bibr" rid="B23">Horsch et al., 1985</xref>; <xref ref-type="bibr" rid="B39">Muthamilselvan et al., 2016</xref>). The putative transgenic <italic>N. benthamiana</italic> (R0) were screened by PCR and IB analysis. Homozygous individuals were selected from F1 to F2 progenies on the basis of kanamycin resistance. All homozygous F2 progenies of transgenic <italic>N. benthamiana</italic> lines were further selected for TPs expression by IB analysis.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption><p>Effect of (SP)<sub>10</sub> signal on glycoprotein accumulation and solubility. <bold>(A)</bold> Schematic representation of BaMV-based secretory expression cassettes with the C-terminal end of SS<sup>Ext</sup> mIFN&#x03B3; fused with 10 units of &#x2018;Ser-Pro&#x2019; motifs of hydroxyproline (Hyp)-O-glycosylated peptides (HypGPs) (designated SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>). <bold>(B)</bold> Analysis of TP expression in IC and AWF fractions at 5 DPI by SDS&#x2013;PAGE, followed by staining with CBS (for IC fraction) or silver stain (for AWF) and IB analysis with alkaline phosphatase (AP)-conjugated mIFN&#x03B3;-specific antibodies. Lanes 1 and 2, refer to two independent experiments, each performed in triplicate. The unprocessed mIFN&#x03B3; and SS<sup>Ext</sup> mIFN&#x03B3; products are indicated by the blank and solid arrowhead, respectively. <bold>(C)</bold> Analysis of the solubility of TP. The protein extracts of <italic>N. benthamina</italic> leaf (20 g) without SDS detergent in extraction buffer A were separated into membranous fraction (P30) and soluble fraction (S30) after centrifugation at 30,000 &#x00D7; <italic>g</italic>, and subsequently analyzed by SDS&#x2013;PAGE, followed by staining with CBS and IB analysis. The positions of various forms of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> proteins are indicated on the right, based on the estimated molecular weights. M, marker; pKn, vector only; P, positive control, purified mIFN&#x03B3; protein derived from <italic>E. coli</italic>; M&#x03B3;, M mIFN&#x03B3;; 1N-MG, M monoglycosylated mIFN&#x03B3;; 2N-MG, M diglycosylated mIFN&#x03B3; MSP, M unprocessed SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>; DG, D Glyco-mIFN&#x03B3;.</p></caption>
<graphic xlink:href="fpls-11-594758-g002.tif"/>
</fig>
<p>Four F2 transgenic lines expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, 3-6-5, 3-9-4, 4-5-1, and 4-14-9 were used for the establishment of suspension cell cultures. The wild-type (non-transgenic) and F2 transgenic <italic>N. benthamiana</italic> expressing mIFN&#x03B3;, line 50-1-3, were used as the negative and positive control, respectively. Leaf explants of the aforementioned plants were cultured and induced on MS callus selection medium plates (Duchefa Biochemie, Haarlem, Netherlands) as described previously (<xref ref-type="bibr" rid="B39">Muthamilselvan et al., 2016</xref>). The subcultures were carried out at a 14-day interval and whitish callus tissues formed on leaf explants in 7&#x2013;8 weeks. In order to generate transgenic suspension cells, approximately 1 g friable callus biomass was transferred to 25 mL Schenk Hildebrandt (SH) liquid media (1:5 of volume ratio), and rotated at 120 rpm on a gyratory shakers at 25&#x2013;26&#x00B0;C. For kinetic studies of the cell growth and protein secretion, suspension cultured cells were collected at an interval of 2 days for determination of cell biomass and secreted SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>.</p>
</sec>
<sec id="S2.SS14">
<title>Statistical Analysis</title>
<p>Statistical analysis was performed using the one-way analysis of variance (one-way ANOVA) with Tukey&#x2019;s <italic>post hoc</italic> multiple comparison analysis (SPSS version 19, IBM Corp, Armonk, NY, United States). Mean values and SD from three independent experiments with technical triplicates are presented. <italic>P</italic>-values &#x003C; 0.001 were considered significant.</p>
</sec>
</sec>
<sec id="S3">
<title>Results</title>
<sec id="S3.SS1">
<title>Modification of BaMV-Based Secretory Cassettes by Incorporating Various Signal Sequences</title>
<p>To enhance the solubility, glycosylation, and secretion of the mIFN&#x03B3; produced through the previously constructed BaMV-based vector, pKB19, five different plant-derived SS candidates, namely SS<sup>Ext</sup> (this study), SS<sup><italic>R</italic><italic>a</italic><italic>m</italic><italic>y</italic></sup> (<xref ref-type="bibr" rid="B1">Alkanaimsh et al., 2016</xref>), SS<sup><italic>Pr1</italic></sup> (<xref ref-type="bibr" rid="B74">Zhu et al., 2012</xref>), SS<sup><italic>Vsp</italic></sup> (<xref ref-type="bibr" rid="B4">Becerra-Arteaga et al., 2006</xref>), and SS<sup><italic>PDI</italic></sup> (<xref ref-type="bibr" rid="B5">Benchabane et al., 2009</xref>) were individually fused to the N-terminus of mIFN&#x03B3; (<xref ref-type="fig" rid="F1">Figure 1A</xref>). It should be noted that the SS<sup>Ext</sup> used in this study was derived from <italic>N. benthamiana</italic> extensin protein, which is distinct from those of <italic>N. tabacum</italic> (<xref ref-type="bibr" rid="B69">Xu et al., 2007</xref>; <xref ref-type="bibr" rid="B68">Xu et al., 2010</xref>) and <italic>N. plumbaginifolia</italic> (<xref ref-type="bibr" rid="B13">De Loose et al., 1991</xref>) (<xref ref-type="supplementary-material" rid="FS1">Supplementary Figure 1</xref>) shown to facilitate the secretion of TPs in <italic>N. tabacum</italic> BY-2 cells. In addition, although SS<sup><italic>Pr1</italic></sup> is derived from <italic>N. benthamiana</italic>, it has not been assayed for the function in enhancing the solubility or secretion efficiency of TPs. These expression cassettes in pKB19 were constructed under the control of dual constitutive 35S promoter of <italic>Cauliflower mosaic virus</italic> (CaMV) and a nopaline synthase (nos) terminator (<xref ref-type="fig" rid="F1">Figure 1A</xref>). To compare the efficiency of various signal sequences, <italic>A. tumefaciens</italic> cells harboring individual construct were infiltrated into <italic>N. benthamiana</italic> leaves. The transiently expressed TPs were harvested and analyzed at the fifth day post inoculation (DPI) as described below.</p>
</sec>
<sec id="S3.SS2">
<title>Fusion of Plant-derived SS to N-terminus of mIFN&#x03B3; Led to the Increased Secretion of Glycosylated mIFN&#x03B3;</title>
<p>To verify whether different SSs could guide TP through the secretory pathway, the extracts from infiltrated leaf tissues were separately processed as intracellular (IC) or apoplast washing fluid (AWF) fractions by vacuum as described in the section &#x201C;MATERIALS AND METHODS&#x201D;, and subsequently assayed for protein yields using immunoblotting (IB) analysis and ELISA with mIFN&#x03B3;-specific antibodies. The result of IB analysis of five SSmIFN&#x03B3; protein samples in AWF fraction (<xref ref-type="fig" rid="F1">Figure 1B</xref>, right panel) revealed the presence of monomeric mIFN&#x03B3; (M&#x03B3;), monomeric monoglycosylated mIFN&#x03B3; (M Glyco-mIFN&#x03B3;, 1N-MG) and monomeric diglycosylated mIFN&#x03B3; (2N-MG) with relative molecular masses (<italic>M</italic><sub><italic>r</italic></sub>) of 16, 18, and 20 kDa, respectively, resulting from the proteolytic cleavage of both SSs and C-terminal polypeptide of SSmIFN&#x03B3; with a difference in the degree of N-glycosylation as observed previously (<xref ref-type="bibr" rid="B12">Curling et al., 1990</xref>; <xref ref-type="bibr" rid="B54">Sareneva et al., 1994</xref>; <xref ref-type="bibr" rid="B29">James et al., 1996</xref>). The dimeric Glyco-mIFN&#x03B3; (DG) with apparent <italic>M</italic><sub><italic>r</italic></sub> of 36&#x2013;40 kDa was also observed, presumably resulted from the dimerization of Glyco-mIFN&#x03B3;. (<xref ref-type="fig" rid="F1">Figure 1B</xref>, right panel) (<xref ref-type="bibr" rid="B54">Sareneva et al., 1994</xref>). In contrast, little or no TPs were detected in the AWF fraction of the control mIFN&#x03B3; sample by IB analysis (<xref ref-type="fig" rid="F1">Figure 1B</xref>, right panel), indicating that the fusion of various SS peptides could lead to the production of secreted mIFN&#x03B3;. The protein extracts isolated from IC fraction were also analyzed by IB with mIFN&#x03B3;-specific antibodies. The result showed the existence of TPs similar to those observed in the AWF fraction, including post-translationally processed 1N-MG, 2N-MG and DG with apparent <italic>M</italic><sub><italic>r</italic></sub> of 18, 20, and 36&#x2013;40 kDa, respectively (<xref ref-type="fig" rid="F1">Figure 1B</xref>, left panel). An additional protein with apparent <italic>M</italic><sub><italic>r</italic></sub> of 23 kDa was also observed (<xref ref-type="fig" rid="F1">Figure 1B</xref>, lower left panel, MSS), which may represent the unprocessed M SSmIFN&#x03B3;, retaining SS polypeptide. In contrast, only the M and D unprocessed forms of mIFN&#x03B3; with apparent <italic>M</italic><sub><italic>r</italic></sub> of 18 and 36 kDa, respectively, were detected in the mIFN&#x03B3; control sample. This result demonstrated that the fusion of plant-derived SSs may facilitate the production and secretion of processed SSmIFN&#x03B3; glycoproteins through the secretory pathway toward apoplast in plants.</p>
<p>The overall accumulation of mIFN&#x03B3; fused with various SSs and the control mIFN&#x03B3; in IC or AWF fractions were further quantified using ELISA (<xref ref-type="fig" rid="F1">Figure 1C</xref>). The result showed that the SS<sup>Ext</sup> fusion led to the highest level of TPs accumulation among the five SSmIFN&#x03B3; constructs, up to 209 &#x00B1; 7 mg/kg fresh weight in IC and 9.5 &#x00B1; 0.45 mg/kg in AWF, reaching an almost 2.7-fold and 92.5-fold compared to that of the control mIFN&#x03B3; in IC and AWF, respectively. However, the accumulation level of SS<sup><italic>Ramy</italic></sup> mIFN&#x03B3; was the lowest (<xref ref-type="fig" rid="F1">Figure 1C</xref>, right panel), with almost no detectable TP in AWF fraction by IB analysis (<xref ref-type="fig" rid="F1">Figure 1B</xref>, right panel). For comparison of BaMV RNA accumulation levels of different constructs, total RNAs were extracted and analyzed by northern blot using BaMV-specific probes. The result revealed that BaMV RNA also accumulated to the highest level in leaves infiltrated with SS<sup>Ext</sup> mIFN&#x03B3; construct at 5 DPI as compared to those infiltrated with other BaMV expression cassettes, suggesting that the fusion of different SS coding sequences may affect the accumulation levels of the viral vectors (<xref ref-type="fig" rid="F1">Figure 1D</xref>). The above results indicated that the native SS<sup>Ext</sup> derived from <italic>N. benthamiana</italic> facilitated significant enhancement of secretion and yields of TP in the current expression system.</p>
</sec>
<sec id="S3.SS3">
<title>Additional C-terminal Fusion of (SP)<sub>10</sub> Further Enhanced TP Yield and Solubility</title>
<p>In order to improve the secretion and solubility of TP, the C-terminal end of SS<sup>Ext</sup> mIFN&#x03B3; was fused with 10 units of &#x2018;Ser-Pro&#x2019; motifs of HypGP tag (designated SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>) (<xref ref-type="fig" rid="F2">Figure 2A</xref>). IB analysis of IC- or AWF-fraction protein extracts from <italic>N. benthamiana</italic> leaves infiltrated with <italic>A. tumefaciens</italic> harboring pKB19SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> construct revealed the presence of specific bands at 16 kDa (M&#x03B3;), 18 kDa (1N-MG), and 20 kDa (2N-MG) in both IC and AWF fractions (<xref ref-type="fig" rid="F2">Figure 2B</xref>), which might be generated from post-translational modification by the proteolytic cleavage of SS<sup>Ext</sup> and the C-terminal (SP)<sub>10</sub> peptides from SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, with a difference in the degree of N-glycosylation. The dimeric Glyco-mIFN&#x03B3; (DG) with apparent <italic>M</italic><sub><italic>r</italic></sub> of 36&#x2013;40 kDa was also observed, presumably resulted from the dimerization of Glyco-mIFN&#x03B3; with or without the C-terminal His-tag of the partially O-glycosylated forms, as estimated by their relative molecular weights. However, the identities of these proteins await further analysis. (<xref ref-type="fig" rid="F2">Figure 2B</xref>). An extra protein was observed with an apparent <italic>M</italic><sub><italic>r</italic></sub> of 25 kDa, which may be unprocessed M SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, retaining SS and (SP)<sub>10</sub> polypeptides in IC fraction (<xref ref-type="fig" rid="F2">Figure 2B</xref>, lower left panel, MSP). Three distinct protein bands were detected by silver staining only in the AWF fractions from leaves infiltrated with <italic>A. tmafaciens</italic> harboring the pKB19SS<sup>Ext</sup> mIFN&#x03B3; and pKB19SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> constructs, with apparent <italic>M</italic><sub><italic>r</italic></sub> of 16 kDa (M&#x03B3;), 18 kDa (1N-MG) and 20 kDa (2N-MG) (indicated on the right of the panel, <xref ref-type="fig" rid="F2">Figure 2B</xref>, upper right), which provided further evidence in support that the TPs were secreted out of plant cells. The overall accumulation levels of TPs in IC and AWF were further quantified using ELISA. The result revealed that the average levels of TPs produced in leaves infiltrated with <italic>A. tmafaciens</italic> harboring pKB19SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> construct were significantly increased, up to 489 &#x00B1; 28 mg/kg and 15.2 &#x00B1; 0.98 mg/kg fresh weight in IC or AWF, respectively (<xref ref-type="table" rid="T1">Table 1</xref>). The result indicated that the fusion of (SP)<sub>10</sub> tag could further enhance the yield of TPs.</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Expression levels of mIFN&#x03B3;, SS<sup>Ext</sup> mIFN&#x03B3; and SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in IC or AWF as quantified by ELISA.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left"><bold>Constructs</bold></td>
<td valign="top" align="center" colspan="2"><bold>IC<sup>&#x2020;</sup></bold><hr/></td>
<td valign="top" align="center" colspan="2"><bold>AWF<sup>&#x2021;</sup></bold><hr/></td>
</tr>
<tr>
<td/>
<td valign="top" align="center"><bold>Yield (mg/kg FW)<sup>&#x00A7;</sup></bold></td>
<td valign="top" align="center"><bold>%TSP<sup>&#x00B6;</sup></bold></td>
<td valign="top" align="center"><bold>Yield (mg/kg FW)<sup>&#x00A7;</sup></bold></td>
<td valign="top" align="center"><bold>%TSP<sup>&#x00B6;</sup></bold></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">mIFNr</td>
<td valign="top" align="center">78<sup><italic>A</italic></sup> &#x00B1; 7</td>
<td valign="top" align="center">1.4</td>
<td valign="top" align="center">0.3<sup><italic>a</italic></sup> &#x00B1; 0.06</td>
<td valign="top" align="center">0.03</td>
</tr>
<tr>
<td valign="top" align="left">SS<sup>Ext</sup> mIFN&#x03B3;</td>
<td valign="top" align="center">209<sup><italic>B</italic></sup> &#x00B1; 7</td>
<td valign="top" align="center">3.5</td>
<td valign="top" align="center">9.5<sup><italic>b</italic></sup> &#x00B1; 0.45</td>
<td valign="top" align="center">1.1</td>
</tr>
<tr>
<td valign="top" align="left">SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub></td>
<td valign="top" align="center">489<sup><italic>C</italic></sup> &#x00B1; 28</td>
<td valign="top" align="center">7.5</td>
<td valign="top" align="center">15.2<sup><italic>c</italic></sup> &#x00B1; 0.98</td>
<td valign="top" align="center">1.7</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>Statistical analyses were performed using one-way analysis of variance (one-way ANOVA) with Tukey&#x2019;s <italic>post hoc</italic> multiple comparison analysis. Mean values with dissimilar superscripts (A,B,C for IC and a, b, c for AWF) are significantly different at <italic>P</italic>-value &#x003C; 0.001 level. Abbreviations: <sup>&#x2020;</sup> IC, Intercellular space; <sup>&#x2021;</sup> AWF, Apoplast washing Fluid; <sup>&#x00A7;</sup> FW, fresh weight; <sup>&#x00B6;</sup> TSP, total soluble protein.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>To examine whether the fusion of SS<sup>Ext</sup> and (SP)<sub>10</sub> to mIFN&#x03B3; could increase the solubility of the recombinant protein SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, total protein extracts from <italic>Agrobacterium</italic> vacuum-infiltrated leaves were separated into the precipitated membranous (P30) and soluble (S30) factions following a two-step centrifugation process at 1,000 and 30,000 &#x00D7; <italic>g</italic>. Subsequently, the protein samples were analyzed by IB with mIFN&#x03B3;-specific antibodies. It was found that the accumulation levels of M&#x03B3; (16 kDa), 1N-MG (18 kDa), 2N-MG (20 kDa) and DG (36&#x2013;40 kDa) were higher in the soluble fraction (S30) from leaves expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> as compared to those from leaves expressing mIFN&#x03B3; or SS<sup>Ext</sup> mIFN&#x03B3; (<xref ref-type="fig" rid="F2">Figure 2C</xref>). In contrast, in the P30 fraction, two specific bands were observed with apparent <italic>M</italic><sub><italic>r</italic></sub> of 25 and 50 kDa, likely to be M and D unprocessed SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, respectively (<xref ref-type="fig" rid="F2">Figure 2C</xref>), representing precursors targeted to endoplasmic reticulum (ER) before being translocated into the secretory pathway. To estimate the amounts of soluble proteins in different samples, each specific band in S30 and P30 fractions was further qualified by densitometry. The result revealed that the percentage of soluble TPs produced in leaves expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was increased up to 81%, which is much higher than those from leaves infiltrated with the mIFN&#x03B3; (30%) or SS<sup>Ext</sup> mIFN&#x03B3; (56%), corresponding to a 2.7- or 1.5-fold increase, respectively (<xref ref-type="fig" rid="F2">Figure 2C</xref>, IB). In comparison, the TPs produced by the construct pK19mIFN&#x03B3;ER in our previous study were targeted into the ER compartment and partitioned mostly to P30 fraction even though various detergents were used in an attempt to solubilize the TPs in the purification processes (<xref ref-type="supplementary-material" rid="FS2">Supplementary Figures 2A,B</xref>). These results indicated that, by fusion with the plant derived signal peptides SS<sup>Ext</sup> and (SP)<sub>10</sub> tag, the yields and solubility of the TPs, such as mIFN&#x03B3;, expressed by using BaMV-based vectors could be greatly enhanced.</p>
</sec>
<sec id="S3.SS4">
<title>Purification of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> Protein Through Acid Precipitation Coupled With Ni<sup>2+</sup>-NTA and Gel Filtration Chromatography</title>
<p>Reduction of non-TPs is an important issue for the production process. As seen in <xref ref-type="fig" rid="F2">Figure 2C</xref>, the Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) large subunit could be observed (53 kDa) as the predominant contaminating protein in the S30 fraction extracted from vacuum-infiltrated leaves. There have been several methods developed for the removal of RuBisCO proteins, with various degrees of success and concerns (<xref ref-type="bibr" rid="B7">Boyhan and Daniell, 2011</xref>; <xref ref-type="bibr" rid="B17">Gupta et al., 2015</xref>; <xref ref-type="bibr" rid="B43">Park et al., 2015</xref>). To reduce the contaminating RuBisCo protein level and obtain SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> proteins with a higher purity, the S30 fraction was processed by the acetic acid method (<xref ref-type="bibr" rid="B43">Park et al., 2015</xref>) and further purified through Ni<sup>2+</sup>-NTA and gel filtration chromatography. The resultant fractions were analyzed by SDS-PAGE and the TPs were visualized by CBS and IB (<xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>). Various forms of mIFN&#x03B3; were detected in the eluates following the addition of 500 mM imidazole, including M&#x03B3; (16 kDa), 1N-MG (18 kDa) and 2N-MG (20 kDa) and DG (36&#x2013;40 kDa) (<xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>, lane Ni<sup>2+</sup>-NTA). In addition, the RuBisCO contaminations in the S30 fraction could be removed through acetic acid precipitation coupled with Ni<sup>2+</sup>-NTA chromatography (<xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>, lane Ni<sup>2+</sup>-NTA). The imidazole-eluted fractions were collected and subject to gel filtration column (Superdex<sup>TM</sup> 200 pg, S200) for further purification. The gel filtration chromatography profiles revealed the presence of different forms of mIFN&#x03B3; proteins in two major peaks, corresponding to fractions 13-23 and 25-63, respectively (<xref ref-type="supplementary-material" rid="FS4">Supplementary Figures 4A,B</xref>). Fractions 25&#x2013;63 were further concentrated by centrifugal ultrafiltration disks (10 kDa NMWL, GE Healthcare, Chicago, IL, United States) to increase protein purity (<xref ref-type="supplementary-material" rid="FS3">Supplementary Figure 3</xref>, lane S200). The purified SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> and TSP were subjected to quantitative ELISA and Bradford assay. The results showed that the purity of TP was increased up to 91% and the final yield was estimated to be approximately 94 &#x00B1; 7 mg/kg tissue weight (FW) as summarized in <xref ref-type="table" rid="T2">Table 2</xref>, which is comparable to PMPs production in certain plant-based bioreactors (<xref ref-type="bibr" rid="B9">Chan and Daniell, 2015</xref>; <xref ref-type="bibr" rid="B38">Mortimer et al., 2015</xref>).</p>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>The purification of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> by acetic acid precipitation coupled with Ni<sup>2+</sup>-NTA and gel filtration chromatography<sup>&#x2020;</sup>.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left"></td>
<td valign="top" align="center"><bold>N<sup>&#x2021;</sup></bold><hr/></td>
<td valign="top" align="center" colspan="3"><bold>SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub></bold><hr/></td>
</tr>
<tr>
<td valign="top" align="left"><bold>Fractions</bold></td>
<td valign="top" align="center"><bold>S30</bold></td>
<td valign="top" align="center"><bold>S30</bold></td>
<td valign="top" align="center"><bold>Ni<sup>2+</sup>NTA</bold></td>
<td valign="top" align="center"><bold>S200<sup>&#x00A7;</sup></bold></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Yield (mg/kg)</td>
<td valign="top" align="center">0</td>
<td valign="top" align="center">&#x2004;551 &#x00B1; 43</td>
<td valign="top" align="center">326 &#x00B1; 41</td>
<td valign="top" align="center">94 &#x00B1; 7</td>
</tr>
<tr>
<td valign="top" align="left">TSP (mg/kg) <sup>&#x00B6;</sup></td>
<td valign="top" align="center">3825 &#x00B1; 202</td>
<td valign="top" align="center">3735 &#x00B1; 34</td>
<td valign="top" align="center">455 &#x00B1; 45</td>
<td valign="top" align="center">103 &#x00B1; 8</td>
</tr>
<tr>
<td valign="top" align="left">Purity (%)</td>
<td valign="top" align="center">&#x2013;</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">72</td>
<td valign="top" align="center">91</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic><bold><sup>&#x2020;</sup></bold>: The yields of different fractions through the purification process were determined by ELISA with specific antiserum against mIFN&#x03B3;. Abbreviations: <sup>&#x2021;</sup> N, healthy leaf extract as a negative control; <sup>&#x00A7;</sup> S200, gel filtration chromatography (Superdex<sup>TM</sup> 200 pg); <sup>&#x00B6;</sup> TSP, total soluble protein.</italic></attrib>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="S3.SS5">
<title>Plant Made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> Is Glycosylated</title>
<p>The authentic hIFN&#x03B3; is a secretory glycoprotein which has two potential N-linked glycosylation sites (<xref ref-type="bibr" rid="B54">Sareneva et al., 1994</xref>, <xref ref-type="bibr" rid="B53">1995</xref>) and three glycoprotein forms: non-glycosylated (M&#x03B3;); monoglycosylated at N<sup>25</sup> (1N-MG), and diglycosylated at N<sup>25</sup> and N<sup>97</sup> (2N-MG) (<xref ref-type="bibr" rid="B22">Hooker and James, 1998</xref>). In order to investigate the glycosylation state of plant-derived SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, both periodic acid-Schiff stains (PAS) (<xref ref-type="bibr" rid="B14">Dubray and Bezard, 1982</xref>) and enzymatic deglycosylation of PNGase A (<xref ref-type="bibr" rid="B58">Takahashi, 1977</xref>; <xref ref-type="bibr" rid="B64">Wang et al., 2018</xref>) or PNGase F (<xref ref-type="bibr" rid="B59">Tarentino et al., 1985</xref>) methods were performed. The purified TP described above was subjected to SDS-PAGE followed by PAS silver staining (<xref ref-type="fig" rid="F3">Figure 3A</xref>). The result revealed the presence of different forms of mIFN&#x03B3; with specific glycosylation patterns in contrast to that of the BSA protein as the negative control. The different forms of Glyco-mIFN&#x03B3; were further digested with PNGase A or PNGase F, followed by IB with mIFN&#x03B3;-specific antibodies to verify whether these were N-glycosylated as the authentic hIFN&#x03B3; does. The PNGase F-based deglycosylation enables cleavage of the asparagine-linked complex, hybrid, or high mannose oligosaccharides. However, the &#x03B1;-(1,3)-fucose attached on the core glycan N-linked to glycoproteins produced in plant can only be removed specifically with PNGase A (<xref ref-type="bibr" rid="B3">Bardor et al., 2006</xref>). The IB result showed that the 2N-MG (20 kDa) and DG (36&#x2013;40 kDa) were digested by PNGase F treatment, migrating faster into specific positions at 18 kDa and 35&#x2013;36 kDa, respectively (<xref ref-type="fig" rid="F3">Figure 3B</xref>). In contrast, deglycosyaltion of Glyco-mIFN&#x03B3; with PNGase A resulted in the alteration of the M&#x03B3; : 1N-MG ratio, with the increase of the M&#x03B3; (16 kDa) relative to that of 1N-MG (18 kDa), as compared to those treated with PNGase F or no enzyme (<xref ref-type="fig" rid="F3">Figure 3B</xref>). The result suggested that Glyco-mIFN&#x03B3; was only partially deglycosyated by PNGase A, which was in accordance with the previous reports (<xref ref-type="bibr" rid="B36">Mishra et al., 2006</xref>; <xref ref-type="bibr" rid="B64">Wang et al., 2018</xref>). The observation indicated that 1N-MG, 2N-MG or DG were modified by N-glycosylation.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption><p>Analysis of the glycosylation of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>. <bold>(A)</bold> Glycoprotein analysis of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> by CBS and Periodic acid-Schiff (PAS) silver stain. Protein samples (0.2 &#x03BC;g each) were separated by SDS&#x2013;PAGE as described above and examined by CBS or PAS. The identity of each sample is indicated on top of each lane. BSA and IgG from 33D2 monoclonal antibody were used as the negative and positive control, respectively. <bold>(B)</bold> Deglycosylation analysis of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> with peptide-N-glycosidase A and F (PNGase A and F) treatment. The elimination of N-glycan of purified SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was detected by IB analysis after PNGases (0.5&#x2013;5 units) digestion. mIFN&#x03B3; derived from <italic>E. coli</italic> as a negative control. SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was purified from <italic>N. benthamiana</italic>. The &#x201C;&#x2013;&#x201D; and &#x201C;+&#x201D; signs represent treatments with or without PNGases. Various forms of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> proteins were indicated on the right. <bold>(C)</bold> The amino acid sequence of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> mapped by LC-MS/MS-based peptide sequencing. Following in-solution tryptic digestion, the samples were subjected to LC-MS/MS analysis. The resulting amino acid sequence covering 68% of mIFN&#x03B3; (29&#x2013;170 residues) were identified and shown in bold. No peptides were identified for the SS<sup>Ext</sup> (residues 1&#x2013;26) and (SP)<sub>10</sub> and 6X His (residues 171-202) regions of the amino sequence, shown in gray. Predicted N<sup>56</sup> and N<sup>128</sup> glycosylation sites were shown in red. <bold>(D)</bold> Tryptic digested glycopeptides of residues 45&#x2013;65, YFNAGHSDVADN<sup>56</sup>GTLFLGILK, and residues 126&#x2013;138, LTN<sup>128</sup>YSVTDLNVQR, from the SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> were identified for glycosylation composition by LC-MS/MS analysis. The percentage of each glycan among the total signals is shown. The white, green, orange and blue columns represent the percentage of non-glycosylation, mannose-, hybrid- or complex-type glycan, respectively. The abbreviations used for monosaccharides are: H, hexose; N, N-acetylhexosamine; F, fucose; X, xylose.</p></caption>
<graphic xlink:href="fpls-11-594758-g003.tif"/>
</fig>
<p>It has been shown that recombinant hIFN&#x03B3; proteins produced in other plant platforms were glycosylated as well (<xref ref-type="bibr" rid="B11">Chen et al., 2004</xref>; <xref ref-type="bibr" rid="B8">Castilho et al., 2018</xref>; <xref ref-type="bibr" rid="B19">Heidari-Japelaghi et al., 2020</xref>), but the glycosylation profiles have not been identified in these previous studies. To characterize the putative glycosylation sites and glycan profiles, the Tryptic/Lys-C digested plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was treated with or without PNGase A and further analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Two N-glycosylated peptides were detected and identified from their molecular masses as being residues (45&#x2013;65) YFNAGHSDVADN<sup>56</sup>GTLFLGILK and residues (126&#x2013;138) LTN<sup>128</sup>YSVTDLNVQR, containing putative N-glycosylation sites at N<sup>56</sup> and N<sup>128</sup> (<xref ref-type="fig" rid="F3">Figures 3C,D</xref>), which corresponded to N<sup>25</sup> (with fucosylated complex-type oligosaccharides) and N<sup>97</sup> (with non-fucosylated hybrid- and high-mannose-type structures) of the native mature hIFN&#x03B3; glycosylation sites, respectively (<xref ref-type="bibr" rid="B52">Sareneva et al., 1996</xref>; <xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>). The assignment of the respective N-glycan structures was shown in <xref ref-type="supplementary-material" rid="FS5">Supplementary Figures 5&#x2013;14</xref>. The most abundant glycan detected at the N<sup>56</sup> site was of the &#x03B1;-(1,3)-fucosylated complex-type structure, &#x223C;68% MGnXF (H3N3F1X1) and &#x223C;27% GnGnXF (H3N4F1X1), whereas the major glycan attached to the N<sup>128</sup> site was the non-fucosylated complex-type MGnX (H3N3X1, &#x223C;62%). Both glycosylation sites at N<sup>56</sup>and N<sup>128</sup>, the major proportion of N-glycan were complex-type structures, indicating that, during the transportation through the secretory pathway, the TP was fully glycosylated as expected. After PNGase A treatment, most of heterogeneous glycan at the N<sup>128</sup> glycosylation site could be completely released. In contrast, only 19.3% &#x03B1;-(1,3)-fucose of the complex-type glycan (accounting for 96% of total glycan) at N<sup>56</sup> site was released by PNGase A. This observation was in accordance to the result of IB analysis of deglycosylated SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, showing only partial digestion after PNGase A treatment. In addition, approximately 68% coverage of the major mIFN&#x03B3; sequence (residues 29&#x2013;170, approximately 16 kDa, as predicated based on <italic>M</italic><sub><italic>r</italic></sub>) was mapped from the purified plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> sample, whereas the SS (residues 1&#x2013;26), C-terminal end (residues 171&#x2013;202, containing mIFN&#x03B3; residues of Arg<sup>171</sup>- Ala<sup>172</sup>-Ser<sup>173</sup>-Gln<sup>174</sup>, (SP)<sub>10</sub> and 6X His-tag) peptides were not detected by the LC-MS/MS-based sequencing (<xref ref-type="fig" rid="F3">Figure 3C</xref>). The result also suggested that the majority of plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> were truncated to approximately the same extent as <italic>Spodoptera frugiperda</italic> (Sf9)-derived hIFN&#x03B3; (terminating at Gly-Arg-Arg region) (<xref ref-type="bibr" rid="B29">James et al., 1996</xref>). The above observation indicated that M&#x03B3; (16 kDa) was possibly the processed products lacking plant-derived SS and (SP)<sub>10</sub> signals through proteolytic cleavage at C-terminus of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> molecules and further N-glycosylated for the production of both 1N-MG (18 kDa) and 2N-MG (20 kDa) forms during the transportation from ER through the trans-Golgi network.</p>
</sec>
<sec id="S3.SS6">
<title>SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> Is Biologically Active in Suppressing Viral Replication</title>
<p>To test the biological activity of purified SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, the antiviral effects was analyzed using a recombinant <italic>Sindbis virus</italic> expressing eGFP (SINV-eGFP) as the target pathogen on cultured HEK 293T cells (<xref ref-type="bibr" rid="B27">Huang P.Y. et al., 2012</xref>). Culture medium (DMEM) was first supplemented with various concentrations of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> ranging from 0.5 ng to 50 ng 12 h prior to SINV-eGFP infection at M.O.I of 0.1. In this assay, commercial interferon (PC-IFN&#x03B3;), and protein extract from healthy <italic>Nicotiana benthamiana</italic> (N) at the same range of concentrations were used as positive and negative control, respectively. At 24h post infection (hpi), the GFP fluorescence, representing overall infection status, was initially observed by fluorescent microscopy. As shown in <xref ref-type="supplementary-material" rid="FS6">Supplementary Figures 15A,B</xref>, upon treatment with 5 or 50 ng SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10,</sub> the GFP fluorescence signals were confined to single cell and apparently decreased, compared with that in negative controls N (50 ng) and BSA (500 ng).</p>
<p>Next, the relative activity of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was evaluated using PC-IFN&#x03B3; as the standard. The PC-IFN&#x03B3; with specific activity of 2 X 10<sup>7</sup> IU/mg was 5-fold serially diluted from 50 ng to 0.4 ng. The eGFP fluorescence intensity was apparently reduced upon treatment of either PC-IFN&#x03B3; or SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, as compared with N (<xref ref-type="fig" rid="F4">Figure 4A</xref>). The overall eGFP accumulation level, as measured by IB analysis, was also dramatically decreased by PC-IFN&#x03B3; treatment in a dose-dependent manner (<xref ref-type="fig" rid="F4">Figure 4B</xref>). On the basis of eGFP accumulation level (<xref ref-type="fig" rid="F4">Figure 4B</xref>), a standard curve of anti-viral activity mediated by PC-IFN&#x03B3; was established (<xref ref-type="fig" rid="F4">Figure 4C</xref>). Based on the standard curve, the specific activity of 4 ng SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was determined to be approximately 120 IU ( = 3 &#x00D7; 10<sup>7</sup> IU/mg protein) (<xref ref-type="fig" rid="F4">Figure 4C</xref>), which was comparable to that of the PC-IFN&#x03B3; ( = 2 &#x00D7; 10<sup>7</sup> IU/mg protein). These results demonstrated that plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> protein exhibits anti-viral biological activity and is able to prevent the spread of SINV-eGFP to neighboring cells.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption><p>Biological activity of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> against SINV. HEK293-T cells were either pre-incubated with DMEM (Mock), 50 ng of protein extracts from <italic>N. benthamiana</italic> healthy leaves as negative control (N), or different concentrations of positive control (PC, commercial IFN&#x03B3;) or SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, as indicated in the panel, for 12 h. Subsequently, cells were infected with SINV-eGFP at an M.O.I of 1.0, and analyzed at 24 hpi. <bold>(A)</bold> eGFP signals as observed by fluorescence microscopy. Scale bar = 100 &#x03BC;m. <bold>(B)</bold> The accumulation level of eGFP and actin as analyzed by IB analysis. <bold>(C)</bold> The relative anti-viral activity of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>. The standard curve of anti-viral effect was initially established by quantifying the intensity of eGFP signals in cells pre-treated with various concentrations of PC-IFN&#x03B3; (with specific activity of 2X10<sup>7</sup> IU/mg protein). The relative activity of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was then estimated using the standard curve.</p></caption>
<graphic xlink:href="fpls-11-594758-g004.tif"/>
</fig>
<p>Another biological activity of mIFN&#x03B3; is to suppress the replication of certain viruses, including <italic>Influenza virus</italic> (IAV). The induction of endogenous mIFN&#x03B3; secretion inhibited IAV (subtype H1N1) infection in MDCK cells (<xref ref-type="bibr" rid="B25">Hu et al., 2016</xref>). Thus, we further evaluated the effect of purified recombinant SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> protein on the replication of IAV (H1N1, PR8 strain). MDCK cells were cultured in DMEM (Mock) with various concentrations of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> ranging from 50&#x2013;800 ng for 12 h followed by challenging with IAV H1N1. The accumulation levels of viral proteins NP and NS1 were monitored at 24 hpi. Similar to that of PC-IFN&#x03B3;, the overall accumulation of both viral proteins were reduced in cells pre-treated with high concentrations of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> (<xref ref-type="fig" rid="F5">Figure 5A</xref>). Quantification of the accumulation levels of NP and NS1 further revealed that the high-dose (i.e., 200 and 800 ng) treatment of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> significantly decreased the amount of NP (<italic>P</italic>-values &#x003C; 0.001) and NS1 (<italic>P</italic>-values &#x003C; 0.001), as shown in <xref ref-type="fig" rid="F5">Figure 5B</xref>. Our results indicate that pretreatment of cells with recombinant SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> could lead to the down-regulation of the <italic>Influenza virus</italic> replication.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption><p>Biological activity of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in suppressing IAV replication. MDCK cells were left uninfected or pre-incubated with DMEM (Mock), 800 ng of protein extracts from <italic>N. benthamiana</italic> healthy leaves as the negative control (N), or three different concentrations (50, 200, 800 ng) of PC- IFN&#x03B3;, or SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, for 12 h followed by infection with IAV at an M.O.I of 1.0. <bold>(A)</bold> Western blot analysis of viral protein expression levels. At 24 hpi, total cells were harvested and subjected to western blot analysis for the determination of expression of viral proteins NS1 and NP. The amount of actin was used as the internal loading control. <bold>(B)</bold> Quantification of protein levels of NS1 and NP by densitometry. The accumulation level of viral proteins in DMEM (Mock) treated cells was arbitrarily set as 100% and the relative protein accumulation levels in N, PC-IFN&#x03B3;, and SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> relative to Mock was plotted. Statistical analysis was performed using one-way ANOVA with Tukey&#x2019;s <italic>post hoc</italic> multiple comparison analysis. Mean expression ratio (%) and SD from three independent experiments with technical triplicates are presented. The <italic>P</italic>-value of &#x003C; 0.001 was considered significantly different, as denoted by different letters.</p></caption>
<graphic xlink:href="fpls-11-594758-g005.tif"/>
</fig>
</sec>
<sec id="S3.SS7">
<title>Secretion of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> Was Greatly Improved in 8-Day-Old <italic>N. benthamiana</italic> Cell Culture</title>
<p>Plant cell suspension cultures allow contained production of recombinant proteins under aseptic conditions (<xref ref-type="bibr" rid="B51">Santos et al., 2016</xref>), and are therefore suitable for the preparation of pharmaceutical proteins in compliance with cGMP regulations. In addition, the secretion of TPs into the culture medium would facilitate continuous production and greatly simplify the purification process. Thus, to verify whether SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> produced by BaMV-based vector could be secreted into the medium, we established suspension cell lines using callus derived from transgenic <italic>N. benthamiana</italic> leaves expressing mIFN&#x03B3; (F2: 50-1-3) and SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> (F2: 3-6-5, 3-9-4, 4-5-1, 4-14-9), with non-transgenic cell line as a negative control (N). Each transgenic or non-transgenic cell line was cultured in SH medium to quantify cell biomass and secreted TP yield by ELISA at different culture intervals. The result of cell biomass quantification showed the transgenic and non-transgenic cell lines had similar growth curves, indicating that chimeric BaMV transgene did not affect cell growth (<xref ref-type="fig" rid="F6">Figure 6A</xref>). The time course of TP secretion was further examined by ELISA as shown in <xref ref-type="fig" rid="F6">Figure 6B</xref>. The result revealed that the yields of secreted TP were dramatically increased after two days of culture and continued increasing till the eighth day. The maximum yield of the secreted SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in 8-day-old <italic>N. benthamiana</italic> transgenic (F2: 3-9-4 line) cell culture was up to 30 &#x00B1; 1 mg/L, which was 21 to 22 folds greater than the accumulation level of mIFN&#x03B3; (F2: 50-1-3 line) control. The product of secreted SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in the 8-day-old culture was further verified by IB with mIFN&#x03B3;-specific antibodies. As shown in <xref ref-type="fig" rid="F6">Figure 6C</xref>, the result of IB showed that all four transgenic <italic>N. benthamiana</italic> cell lines expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> could post-translationally modify the secreted products, including M&#x03B3; (16 kDa), 1N-MG (18 kDa), 2N-MG (20 kDa) and D Glyco-mIFN&#x03B3; (36&#x2013;40 kDa), as opposed to that expressing mIFN&#x03B3; (F2: 50-1-3 line) and non-transgenic cell line (<xref ref-type="fig" rid="F6">Figure 6C</xref>, bottom panel). This observation is in agreement with the detection of secreted product in AWF of <italic>N. benthamiana</italic> leaves inoculated with the corresponding constructs. In contrast, large amounts of the unprocessed MSP (25 kDa, retaining SS<sup>Ext</sup> and (SP)<sub>10</sub> polypeptides) were detected in the IC fraction compared to other forms of TP (<xref ref-type="fig" rid="F6">Figure 6C</xref>, upper panel). In addition, most of the expressed TP products from transgenic cell suspension cultures were secreted into the culture media (the S fraction) with 65&#x2013;70% secretion efficiency (<xref ref-type="supplementary-material" rid="TS2">Supplementary Table 2</xref>). Together, these results demonstrated that the BaMV-based vector, coupled with suitable signal peptides, could be applied in the production of pharmaceutical proteins from the medium of <italic>N. benthamiana</italic> suspension cell cultures.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption><p>Secretion of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in <italic>N. benthamina</italic> suspension cell culture. Suspension cells established from wilde-type (non-transgenic, N), transgenic <italic>N. benthamina</italic> line expressing mIFN&#x03B3; (F2: 50-1-3), or four transgenic lines expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> (F2: 3-6-5/3-9-4/4-5-1/4-14-9) were cultured in 25 ml SH media (containing 100 mg/L kanamycin). <bold>(A)</bold> Time course of cell biomass accumulation. <bold>(B)</bold> The production of secreted proteins in culture media analyzed by ELISA. <bold>(C)</bold> Detection of protein accumulation in the intracellular (IC) or secreted (S) fractions, analyzed by western blot with mIFN&#x03B3;-specific antibodies, after an 8-day culture period. Various forms of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> proteins were indicated on the right. M, marker; P, positive control, purified mIFN&#x03B3; protein derived from <italic>E. coli</italic>; M&#x03B3;, M mIFN&#x03B3;; 1N-MG monoglycosylated mIFN&#x03B3;, 2N-MG diglycosylated mIFN&#x03B3;; MSP, M unprocessed SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>; DG, D Glyco-mIFN&#x03B3;.</p></caption>
<graphic xlink:href="fpls-11-594758-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="S4">
<title>Discussion</title>
<p>Solubility and secretion efficiency of the TP are among the major limiting factors for the downstream processing in the plant-based production systems. The post-translational modification and bioactivity of the TP are the key determinants for the applicability of the products. In this study, we developed a protein expression system with high potential for the large-scale production of plant-made TP, SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>. Based on the BaMV-derived vector, pKB19mIFN&#x03B3;, that we developed previously (<xref ref-type="bibr" rid="B30">Jiang et al., 2019</xref>), the native SS<sup>Ext</sup> from <italic>N. benthamiana</italic> and (SP)<sub>10</sub> signal peptides were incorporated as the fusion tags of the TP, mIFN&#x03B3;, as the apoplast leader sequence and secretion booster, to enhance the solubility and secretion of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>. We showed that the fusion tags enabled the purification of target as the secreted glycoproteins from the soluble fraction of vacuum-infiltrated leaves and the medium of transgenic <italic>N. benthamiana</italic> suspension cell cultures. The yields of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> proteins reached 94 &#x00B1; 7 mg/kg FW and 30 &#x00B1; 1 mg/L culture media in vacuum-infiltrated leaves and suspension cell cultures, respectively. Additionally, the N-glycosylation profile and anti-virus activity of the soluble SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> were verified in this study. The results indicated that this improved expression system may serve as an attractive alternative for the production of secreted, soluble, glycosylated, and bioactive PMPs.</p>
<sec id="S4.SS1">
<title>The Choice of Optimal SS for the Efficient Production of Secreted, Soluble, and Glycosylated Protein</title>
<p>Glycosylation and proteolytic maturation during the transportation through the secretory pathway are important co- or post-translational modifications of PMPs. One of the major aim of this study is to improve the secretion efficiency of mIFN&#x03B3; by the fusion of optimal SSs derived from plants into the BaMV-based vector system. Therefore, various plant-derived SSs were taken into consideration to increase the yields of secreted mIFN&#x03B3; <italic>in N. benthamiana</italic>, including a novel, native SS from the extensin of <italic>N. benthamiana</italic> cloned in this study. Our result showed that the yields of various SSmIFN&#x03B3; varied widely, reaching a 28-fold difference between the highest (the native SS<sup>Ext</sup>) and lowest (SS<sup><italic>Ramy</italic></sup>) secretors (<xref ref-type="fig" rid="F1">Figure 1C</xref>). It has been shown that the secretion efficiency of recombinant proteins are greatly influenced by the fusion of specific SS in various hosts, including CHO cells with a 100-fold difference (<xref ref-type="bibr" rid="B33">Kober et al., 2013</xref>), <italic>Chlamydomonas reinhardtii</italic> with a 10-fold difference (<xref ref-type="bibr" rid="B37">Molino et al., 2018</xref>) and <italic>Oryza sativa</italic> L. with a 2-fold difference (<xref ref-type="bibr" rid="B26">Huang et al., 2015</xref>). Our findings showed that SS<sup>Ext</sup> led to an increase of yield up to 2.7 folds in IC fraction (<xref ref-type="fig" rid="F1">Figure 1C</xref>), as compared to the negative control of mIFN&#x03B3; without SS<sup>Ext</sup>. In addition, SS<sup>Ext</sup> would facilitate the secretion of various forms of TP, including M&#x03B3; (16 kDa), 1N-MG (18 kDa), 2N-MG (20 kDa) and DG (36&#x2013;41 kDa), in the extracellular (apoplast) space, which is not observed from the leaves infiltrated with the negative control construct of pKB19mIFN&#x03B3; (<xref ref-type="fig" rid="F1">Figures 1B,C</xref>). Thus, the results revealed that the <italic>N. benthamiana</italic> SS<sup>Ext</sup> is a potent plant-derived SS for efficient production of secreted Glyco-mIFN&#x03B3;. However, it is worth noting that different SSs might perform differently for different TPs, and it is necessary to identify the optimal SS for customization. The BaMV-based vectors with different SSs constructed in this study provide a convenient system for the screening of the optimal SS for different TPs for future studies.</p>
<p>The addition of HypGP signal, (SP)<sub>10</sub>, fused to C terminal of SS<sup>Ext</sup> mIFN&#x03B3; (designated SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>), was also shown to enhance the secretion of mIFN&#x03B3; in either apoplast space of <italic>N. benthamiana</italic> leaf tissues (<xref ref-type="fig" rid="F2">Figure 2B</xref>) or suspension cell cultures (<xref ref-type="fig" rid="F6">Figures 6B,C</xref>). These results are in agreement with the previous studies for the production of high amount of secreted recombinant proteins in tobacco BY2 suspension cells (<xref ref-type="bibr" rid="B69">Xu et al., 2007</xref>, <xref ref-type="bibr" rid="B68">2010</xref>; <xref ref-type="bibr" rid="B72">Zhang et al., 2019a</xref>), tobacco hairy root cultures (<xref ref-type="bibr" rid="B73">Zhang et al., 2019b</xref>) and green microalga <italic>Chlamydomonas reinhardtii</italic> (<xref ref-type="bibr" rid="B47">Ramos-Martinez et al., 2017</xref>). HypGP modules have been shown to be molecular carriers to boost the transport of fused proteins along secretion pathway into extracellular space (<xref ref-type="bibr" rid="B73">Zhang et al., 2019b</xref>). Interestingly, in our study, both the yield and solubility of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> were increased significantly, up to 6 and 2.7 folds, respectively, higher than those from the <italic>N. benthamiana</italic> leaf tissues expressing the control mIFN&#x03B3; (<xref ref-type="table" rid="T1">Table 1</xref> and <xref ref-type="fig" rid="F2">Figure 2C</xref>). Thus, the results demonstrated that it is advantageous to apply HypGP technology in combination with species-specific SS<sup>Ext</sup> in <italic>N. benthamiana</italic> to increase both the yield and solubility of prone-to-aggregate TP, which may further enhance the efficiency in the subsequent protein purification without the needs for protein refolding and re-solubilization processes. The mIFN&#x03B3; protein has the tendency to self-associate into disordered aggregates through hydrophobic interactions (<xref ref-type="bibr" rid="B31">Jin et al., 2006</xref>; <xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>). Thus, many scientists have explored different heterologous expression systems and used different strategies to enhance the production of soluble mIFN&#x03B3;, such as fusing with artificial SS to transport TPs into periplasm in <italic>E.coli</italic> (BL-21) (<xref ref-type="bibr" rid="B21">Hernandez et al., 2008</xref>), or with solubility enhancing tags, e.g., small ubiquitin-like modifier (SUMO) in <italic>E. coli</italic> co-expressing two chaperone systems (dnaK&#x2013;dnaJ&#x2013;grpE and groES&#x2013;groEL) (<xref ref-type="bibr" rid="B60">Tileva et al., 2016</xref>). However, the absence of proper post-translational modification in <italic>E. coli</italic> systems rendered the TP non-glycosylated, which reduced the half-life of mIFN&#x03B3; in blood, usually with a lower biological activity (<xref ref-type="bibr" rid="B22">Hooker and James, 1998</xref>; <xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>). The results of this study showed that the modified BaMV-based expression system allowed for the production of TPs with eukaryotic PTM and also overcame the aggregation nature of mIFN&#x03B3;, increasing greatly the solubility of the protein product. The accumulation level of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> in the inoculated leaves reached up to 489 &#x00B1; 28 mg/kg and 15.2 &#x00B1; 0.98 mg/kg FW, corresponding to approximately 7.5% and 1.7% of TSP in IC and AWF fractions, respectively (<xref ref-type="table" rid="T1">Table 1</xref>), which are comparative or higher than those observed from previous studies for plant-made mIFN&#x03B3;, including (1) rice suspension cells systems (131.6 ng/g cells biomass and 17.4 ng/mL media) (<xref ref-type="bibr" rid="B11">Chen et al., 2004</xref>) (2) tobacco leaves system (20 &#x03BC;g/g FW) (<xref ref-type="bibr" rid="B66">Wu et al., 2009</xref>); (3) a chimeric ZYMV-based vector system in <italic>Chenopodium quinoa</italic> leaves (1&#x2013;1.2 mg/100 g FW) (<xref ref-type="bibr" rid="B40">Nassaj Hosseini et al., 2013</xref>); (4) transgenic tobacco chloroplast system (360 &#x03BC;g/g FW) (<xref ref-type="bibr" rid="B34">Leelavathi and Reddy, 2003</xref>); and (5) an extensin-like protein (ELP)-fusion system in tobacco leaves (244 ng/&#x03BC;g TSP) (<xref ref-type="bibr" rid="B18">Heidari-Japelaghi et al., 2019</xref>) and in transgenic tobacco plants (4% of TSP) (<xref ref-type="bibr" rid="B19">Heidari-Japelaghi et al., 2020</xref>).</p>
</sec>
<sec id="S4.SS2">
<title>Post-Translational Modification During Protein Transportation Through the Secretion Pathway</title>
<p>Plants possess highly conserved secretory pathway similar to mammalian cells in terms of PTM (ex. glycosylation, phosphorylation, and proteolytic maturation), protein folding and assembly into biological active forms of therapeutic proteins (<xref ref-type="bibr" rid="B62">Walsh and Jefferis, 2006</xref>; <xref ref-type="bibr" rid="B56">Schneider et al., 2014</xref>). It has been reported that the glycosylation form of hIFN&#x03B3; can profoundly affect both solubility and stability (<xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>). The different eukaryotic expression systems producing specific N-glycan would also affect therapeutic applications. For example, mammalian-expressed hIFN&#x03B3; with complex-type glycosylation exhibited higher levels of biological activity against cancer cells compared to its deglycosylated form (<xref ref-type="bibr" rid="B50">Razaghi et al., 2017b</xref>). However, the heterogeneous N-glycan side chains of plant-produced hIFN&#x03B3; have not yet been completely identified to date. Thus, we further analyzed the glycan profiles of plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> variants by using LC-MS/MS and PNGase A deglycosylation analysis. The results showed that 1N-MG (18 kDa), 2N-MG (20 kDa) and DG (36&#x2013;40 kDa) were N-glycosylated at N<sup>56</sup> and N<sup>128</sup> (<xref ref-type="fig" rid="F3">Figure 3</xref>), which corresponded to native mIFN&#x03B3; glycosylation sites at N<sup>25</sup> and N<sup>97</sup>, respectively (<xref ref-type="bibr" rid="B52">Sareneva et al., 1996</xref>; <xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>). It also revealed that the approximately 96% of the N<sup>56</sup> glycosylation site of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> was dominated by &#x03B1;-(1,3)-fucose complex-type glycan; whereas approximately 58% of N<sup>128</sup> was occupied by considerably heterogeneous glycan (<xref ref-type="fig" rid="F3">Figure 3D</xref>). The high N-glycan variations have also been observed in leukocytes expressing native hIFN&#x03B3; (N<sup>97</sup>) (<xref ref-type="bibr" rid="B52">Sareneva et al., 1996</xref>; <xref ref-type="bibr" rid="B48">Razaghi et al., 2016</xref>), corresponding to the N<sup>56</sup> of our plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>.Thus, the result indicated that the BaMV-based protein expression system in plants has the potential of producing TPs with glycosylation types similar to those of mammalian systems. In addition, a previous study has shown the glycosylation site at N<sup>25</sup>, corresponding to the N<sup>56</sup> of our plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, is the key determinant for efficient dimerization and secretion of IFN&#x03B3; (<xref ref-type="bibr" rid="B54">Sareneva et al., 1994</xref>). Thus, although the N<sup>128</sup> glycosylation site of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> produced in <italic>N. benthamiana</italic> was not completely glycosylated, the partially glycosylated protein (1N-MG) may still be eligible for secretion and dimerization with only one glycosylation at N<sup>56</sup> (1N-MG).</p>
<p>In plant cells, as in other mammalian cells, the generation of oligosaccharide N-linked-Asn residues starts in the ER, followed by several maturation steps involving removal and the addition of sugar residues during ER transportation to Golgi complex (<xref ref-type="bibr" rid="B15">Faye et al., 2005</xref>; <xref ref-type="bibr" rid="B16">Gomord et al., 2010</xref>). In our case, the nascent mIFN&#x03B3; was transported along the secretory pathway and undergoes several maturation steps to generate high-mannose-type N-glycan of mIFN&#x03B3; in ER. Eventually, the addition of sugar (e.g., fucose, N-acetylglucosamine, xylose and galactose) yields relatively abundant complex-type structures of mIFN&#x03B3; at N<sup>56</sup> and N<sup>128</sup> in Golgi complex. However, we hypothesized that most plant-derived SS<sup>Ext</sup> and (SP)<sub>10</sub> signals were trimmed by protease hydrolysis through the secretory pathways and the subsequent proteolytic maturation processes, based on the results of LC-MS/MS and deglycosylation analyses. These results indicated that the majority of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> were truncated to the root form of mIFN&#x03B3; without SS<sup>Ext</sup> signal and intact HypGP glycomodule, which may be particularly susceptible to posttranslational proteolysis at C-terminal end of hIFN&#x03B3; as observed in CHO cell- (<xref ref-type="bibr" rid="B12">Curling et al., 1990</xref>) or <italic>Spodoptera frugiperda</italic> (Sf9) (<xref ref-type="bibr" rid="B12">Curling et al., 1990</xref>) cell-derived hIFN&#x03B3; with C-terminus-cleaved form. Therefore, the truncated mIFN&#x03B3; monomer (16 kDa) was glycosylated through post translational modification into the proteolytically maturated form, 1N-MG (18 kDa) and 2N-MG (20 kDa), which then underwent self-assembly into the biologically active form of DG (36&#x2013;40 kDa). This PTM process is similar to that of &#x03B1;1-antichymotrypsin or &#x03B1;1-antitrypsin-(AP)<sub>20</sub> fusion, which were also modified by glycosylation and proteolytic trimming in BY2 suspension cells (<xref ref-type="bibr" rid="B5">Benchabane et al., 2009</xref>; <xref ref-type="bibr" rid="B72">Zhang et al., 2019a</xref>), with remarkable resemblance to &#x03B1;1-antitrypsin-(AP)<sub>20</sub> fusion which was also partially cleaved at the C-terminus to remove the (AP)<sub>20</sub> HypGP signal during their transit through the secretory pathway (<xref ref-type="bibr" rid="B72">Zhang et al., 2019a</xref>).</p>
</sec>
<sec id="S4.SS3">
<title>Comparison With Commercial Recombinant mIFN&#x03B3; for Activity Against Viruses</title>
<p>Commercial recombinant mIFN&#x03B3; (ACTIMMUNE<sup>&#x00AE;</sup>, IFN&#x03B3;-1b) has been used as a clinically effective drug for severe malignant osteopetrosis (<xref ref-type="bibr" rid="B32">Key et al., 1992</xref>) and chronic granulomatous disease (<xref ref-type="bibr" rid="B6">Bolinger and Taeubel, 1992</xref>) after being approved by the U.S. Food and Drug Administration (FDA). Recombinant human mIFN&#x03B3; has been studied for therapeutic applications against a variety of viruses, like <italic>hepatitis B virus</italic> (<xref ref-type="bibr" rid="B44">Parvez et al., 2006</xref>), <italic>Dengue virus</italic> (<xref ref-type="bibr" rid="B11">Chen et al., 2004</xref>), <italic>Vesicular stomatitis virus</italic> (VSV) (<xref ref-type="bibr" rid="B31">Jin et al., 2006</xref>), and <italic>Encephalomyocarditis virus</italic> (EMCV) (<xref ref-type="bibr" rid="B34">Leelavathi and Reddy, 2003</xref>; <xref ref-type="bibr" rid="B63">Wang et al., 2014</xref>). The biological activity assays in this study showed that plant-made SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> could induce the anti-viral state to chimeric SINV-eGFP infected cells and inhibit its proliferation with a specific activity of 3 &#x00D7; 10<sup>7</sup> IU/mg protein, which is higher than that of the commercial P-IFN&#x03B3;, 2 &#x00D7; 10<sup>7</sup> IU/mg protein (<xref ref-type="fig" rid="F4">Figures 4A&#x2013;C</xref>). Also, SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> could inhibit IVA replication as determined by the reduction of both NS1 and NP protein expression, suggesting that SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> has the biological properties against different viruses similar to the commercial PC-IFN&#x03B3;.</p>
</sec>
<sec id="S4.SS4">
<title>The Advantages of Producing Secreted Proteins Using Plant-Suspension Cells</title>
<p>The productions of plant-made pharmaceuticals are strictly regulated by different government agencies in different countries, which usually require the compliance with the current Good Manufacturing Practice (cGMP). For efficient production of secreted TP in conformity with the cGMP regulations, we established suspension cell lines of transgenic <italic>N. benthamiana</italic> expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> that could produce secretory forms of M&#x03B3; (16 kDa), 1N-MG (18 kDa), 2N-MG (20 kDa) and DG (36&#x2013;40 kDa) from SH culture medium (<xref ref-type="fig" rid="F6">Figure 6C</xref>). The result of ELISA showed that <italic>N. benthamiana</italic> transgenic cell line F2: 3-9-14 produced the highest amount of TP, up to 30 &#x00B1; 1 mg/L, which was 21 to 22 folds greater than the expression of mIFN&#x03B3; control (<xref ref-type="fig" rid="F6">Figure 6B</xref>). The improved production of secreted protein was in agreement with previous studies for BY2 cell systems based on HypGP technology expressing other PMPs, such as IFN&#x03B1;2-(SP)<sub>10</sub> (17&#x2013;28 mg/L culture medium) (<xref ref-type="bibr" rid="B69">Xu et al., 2007</xref>), hGH-(SP)<sub>10</sub> (16&#x2013;35 mg/L culture media) (<xref ref-type="bibr" rid="B68">Xu et al., 2010</xref>), and AAT-(AP)<sub>20</sub> (34.7 mg/L culture medium) (<xref ref-type="bibr" rid="B72">Zhang et al., 2019a</xref>). Other than yielding a higher amount of secreted TP, plant suspension cell culture systems also provide several advantages over the mammalian cell culture or whole plant systems, such as the lower risk of human pathogen contamination, less expensive culture medium, higher reproducibility and easier control for product quality by applying cGMP, making it a suitable alternative to achieve large-scale and safe production of PMPs (<xref ref-type="bibr" rid="B20">Hellwig et al., 2004</xref>; <xref ref-type="bibr" rid="B39">Muthamilselvan et al., 2016</xref>; <xref ref-type="bibr" rid="B57">Sukenik et al., 2018</xref>). Further optimization of the culture conditions for the transgenic <italic>N. benthamiana</italic> suspension cell cultures expressing SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> is currently underway for the safe and large-scale production of TPs.</p>
</sec>
</sec>
<sec id="S5">
<title>Conclusion</title>
<p>To our knowledge, this is first report describing the efficient production of a secreted, soluble and glycosylated PMP, SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub>, in <italic>N. benthamiana</italic> using a BaMV-based vector, with the incorporation of a novel, native SS<sup>Ext</sup> and a (SP)<sub>10</sub> designer tag. Our study also revealed that SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> produced in the plant system could be properly processed by post-translational modification, including trimming of signal sequences and glycosylation, resulting in protein products that exhibited the biological activity to suppress SINV and IAV replication. Thus, this improved BaMV secretory expression system represented a worthy option for high-level expression of glycosylated and biologically active PMPs. Furthermore, the suspension cell culture systems established in this study provide valuable resources for further development of industrial-scale production of therapeutic proteins in compliance with cGMP regulations.</p>
</sec>
<sec id="S6">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="FS1">Supplementary Material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="S7">
<title>Author Contributions</title>
<p>M-CJ, C-CH, W-LH, T-LH, N-SL, and Y-HH designed the study and analyzed the interpreted data. M-CJ, W-LH, and T-LH acquired the experimental data. M-CJ, C-CH, W-LH, T-LH, and Y-HH drafted and revised the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This work was financially supported in part by the Advanced Plant Biotechnology Center from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education (MOE) in Taiwan, by the Ministry of Science and Technology, Taiwan (MOST-108-2313-B-005-004), and by Academia Sinica (AS-SUMMIT-109).</p>
</fn>
</fn-group>
<ack>
<p>The authors thank the Glycan Sequencing/Profiling Core Facility, Genomics Research Center, Academic Sinica, for analysis of glycan profiles. We also thank Heng-Hsin Lin, Ching-Yu Tseng and Yue-Rong Tan for their technical assistance.</p>
</ack>
<sec id="S10" sec-type="supplementary material"><title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fpls.2020.594758/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fpls.2020.594758/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.pdf" id="FS1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 1</label>
<caption><p>Alignment of signal peptide sequences of three extensin proteins from <italic>Nicotiana spp</italic>.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="FS2" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 2</label>
<caption><p>Effect of different surfactants on mIFN&#x03B3;ER solubility.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="FS3" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 3</label>
<caption><p>The purification of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> from vacuum-infiltrated leaves through acetic acid precipitation coupled with Ni<sup>2+</sup>-NTA and gel filtration chromatography.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="FS4" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 4</label>
<caption><p>The purification of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> from vacuum-infiltrated leaves by gel filtration chromatography.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="FS5" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figures 5&#x2013;14</label>
<caption><p>LC-MS/MS analysis of the glycopeptides and glycan generated from SS<sup>Ext</sup> mIFNg(SP)<sub>10</sub>.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="FS6" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Figure 15</label>
<caption><p>Detection of SS<sup>Ext</sup> mIFN&#x03B3;(SP)<sub>10</sub> activity against SINV in SEK293-T cell.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="TS1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Table 1</label>
<caption><p>The list of primers.</p></caption>
</supplementary-material>
<supplementary-material xlink:href="Table_1.pdf" id="TS2" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink">
<label>Supplementary Table 2</label>
<caption><p>Secretion efficiency of TP in 8-day-old <italic>N. benthamiana</italic> cell culture.</p></caption>
</supplementary-material>
</sec>
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</ref-list><glossary>
<title>Abbreviations</title>
<def-list id="DL1">
<def-item><term>AWF</term><def><p>apoplast washing fluid</p></def></def-item>
<def-item><term>BaMV</term><def><p><italic>Bamboo mosaic virus</italic></p></def></def-item>
<def-item><term>CaMV</term><def><p><italic>Cauliflower mosaic virus</italic></p></def></def-item>
<def-item><term>CBS</term><def><p>Coomassie Blue stain</p></def></def-item>
<def-item><term>cGMP</term><def><p>current Good Manufacturing Practice</p></def></def-item>
<def-item><term>CP</term><def><p>coat protein</p></def></def-item>
<def-item><term>D</term><def><p>dimeric</p></def></def-item>
<def-item><term>DG</term><def><p>dimeric glycosylated mIFN &#x03B3;</p></def></def-item>
<def-item><term>DPI</term><def><p>days post-infiltration</p></def></def-item>
<def-item><term>DSP</term><def><p>during downstream purification</p></def></def-item>
<def-item><term>FW</term><def><p>fresh weight</p></def></def-item>
<def-item><term>Glyco-mIFN &#x03B3;</term><def><p>glycosylated mIFN &#x03B3;</p></def></def-item>
<def-item><term>HypGPs</term><def><p>hydroxyproline (Hyp)-O-glycosylated peptides</p></def></def-item>
<def-item><term>IAV</term><def><p><italic>Influenza A virus</italic></p></def></def-item>
<def-item><term>IB</term><def><p>immunoblotting</p></def></def-item>
<def-item><term>IC</term><def><p>intracellular</p></def></def-item>
<def-item><term>IFN &#x03B3;</term><def><p>interferon gamma</p></def></def-item>
<def-item><term>LC-MS/MS</term><def><p>Liquid chromatography-tandem mass spectrometry</p></def></def-item>
<def-item><term>M &#x03B3;</term><def><p>monomeric mIFN &#x03B3;</p></def></def-item>
<def-item><term>M</term><def><p>monomeric</p></def></def-item>
<def-item><term>MG</term><def><p>monomeric glycosylated mIFN &#x03B3;</p></def></def-item>
<def-item><term>mIFN &#x03B3;</term><def><p>mature interferon gamma</p></def></def-item>
<def-item><term><italic>M</italic><sub><italic>r</italic></sub></term><def><p>molecular weights</p></def></def-item>
<def-item><term>P1</term><def><p>pellet fraction after centrifugation at 1,000 &#x00D7; <italic>g</italic></p></def></def-item>
<def-item><term>P30</term><def><p>pellet fraction after centrifugation at 30,000 &#x00D7; <italic>g</italic></p></def></def-item>
<def-item><term>PAS</term><def><p>periodic acid-Schiff stain</p></def></def-item>
<def-item><term>PMPs</term><def><p>plant made-pharmaceuticals</p></def></def-item>
<def-item><term>PNGase A</term><def><p>Peptide-N-Glycosidase A</p></def></def-item>
<def-item><term>PNGase F</term><def><p>Peptide-N-Glycosidase F</p></def></def-item>
<def-item><term>PTM</term><def><p>post-translational modification</p></def></def-item>
<def-item><term>RuBisCO</term><def><p>Ribulose-1,5-bisphosphate carboxylase/oxygenase</p></def></def-item>
<def-item><term>S1</term><def><p>soluble fraction after centrifugation at 1,000 &#x00D7; <italic>g</italic></p></def></def-item>
<def-item><term>S30</term><def><p>soluble fraction after centrifugation at 30,000 &#x00D7; <italic>g</italic></p></def></def-item>
<def-item><term>SINV</term><def><p><italic>Sindbis virus</italic></p></def></def-item>
<def-item><term>SS(s)</term><def><p>secretory signal(s)</p></def></def-item>
<def-item><term>TP(s)</term><def><p>target protein(s)</p></def></def-item>
<def-item><term>TSP</term><def><p>total soluble protein.</p></def></def-item>
</def-list>
</glossary>
</back>
</article>