Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 02 Jul 2024

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes

in Functional and Applied Plant Genomics

Ana I. Saballos
Matthew D. Brooks
Patrick J. Tranel
Martin M. Williams

Frontiers in Plant Science

doi 10.3389/fpls.2024.1404889

4,726 views
1 citation

Original Research

Published on 01 Jul 2024

Genome-wide analysis of soybean hypoxia inducible gene domain containing genes: a functional investigation of GmHIGD3

in Functional and Applied Plant Genomics

Xiaoyan Geng
Lu Dong
Tiantian Zhu
Chunhong Yang
Jianhua Zhang
Binhui Guo
Huatao Chen
Qun Zhang
Li Song

Frontiers in Plant Science

doi 10.3389/fpls.2024.1403841

2,470 views
1 citation

Original Research

Published on 28 Jun 2024

The complete mitochondrial genome of Pontederia crassipes: using HiFi reads to investigate genome recombination and gene transfer from chloroplast genome

in Functional and Applied Plant Genomics

Zhigang Hao
Xiaoqi Jiang
Lei Pan
Jingyuan Guo
Yi Chen
Jianqiang Li
Biao Liu
Anping Guo
Laixin Luo
Ruizong Jia

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407309

2,534 views
1 citation

Original Research

Published on 24 Jun 2024

Reprogramming of DNA methylation and changes of gene expression in grafted Hevea brasiliensis

in Functional and Applied Plant Genomics

Hui-Liang Li
Ying Wang
Dong Guo
Jia-Hong Zhu
Yu Wang
Hao-Fu Dai
Shi-Qing Peng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407700

2,422 views
4 citations

Original Research

Published on 21 Jun 2024

Genome-wide association study reveals 18 QTL for major agronomic traits in a Nordic–Baltic spring wheat germplasm

in Functional and Applied Plant Genomics

Andrius Aleliūnas
Andrii Gorash
Rita Armonienė
Ilmar Tamm
Anne Ingver
Māra Bleidere
Valentīna Fetere
Hannes Kollist
Tomasz Mroz
Morten Lillemo

Frontiers in Plant Science

doi 10.3389/fpls.2024.1393170

3,409 views
5 citations

Original Research

Published on 20 Jun 2024

RNA-seq analysis reveals transcriptome reprogramming and alternative splicing during early response to salt stress in tomato root

in Functional and Applied Plant Genomics

Jianghuang Gan
Yongqi Qiu
Yilin Tao
Laining Zhang
Thomas W. Okita
Yanyan Yan
Li Tian

Frontiers in Plant Science

doi 10.3389/fpls.2024.1394223

6,409 views
12 citations

Data Report

Published on 19 Jun 2024

Chromosome-level genome assembly of Ajuga decumbens

in Functional and Applied Plant Genomics

Yubang Gao
Jingzhao Li
Yuli Xie
Teng Zhang
Kai Tian
Xiaotang Li
Lunguang Yao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1413468

3,215 views

Original Research

Published on 18 Jun 2024

Unveiling the “hidden quality” of the walnut pellicle: a precious source of bioactive lipids

in Functional and Applied Plant Genomics

Ramona Abbattista
Noah G. Feinberg
Isabel F. Snodgrass
John W. Newman
Abhaya M. Dandekar

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395543

6,397 views
7 citations

Original Research

Published on 12 Jun 2024

Fine mapping of QYrsv.swust-1BL for resistance to stripe rust in durum wheat Svevo

in Functional and Applied Plant Genomics

Xinli Zhou
Guoyun Jia
Yuqi Luo
Xin Li
Lin Cai
Xianming Chen
Zhensheng Kang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1395223

1,968 views
1 citation

Original Research

Published on 12 Jun 2024

Seed development-related genes contribute to high yield heterosis in integrated utilization of elite autotetraploid and neo-tetraploid rice

in Functional and Applied Plant Genomics

Zijun Lu
Weicong Huang
Qi Ge
Guobin Liang
Lixia Sun
Jinwen Wu
Fozia Ghouri
Muhammad Qasim Shahid
Xiangdong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1421207

2,557 views
2 citations

Original Research

Published on 06 Jun 2024

Multiple transcription factors involved in the response of Chinese cabbage against Plasmodiophora brassicae

in Functional and Applied Plant Genomics

Sida Meng
Xinyu Yan
Yinglan Piao
Shizhen Li
Xin Wang
Jing Jiang
Yue Liang
Wenxing Pang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1391173

2,681 views
3 citations

Mini Review

Published on 06 Jun 2024

Uncovering the effect of waterlogging stress on plant microbiome and disease development: current knowledge and future perspectives

in Functional and Applied Plant Genomics

Anshika Tyagi
Sajad Ali
Rakeeb Ahmad Mir
Sandhya Sharma
Kumari Arpita
Mohammed A. Almalki
Zahoor Ahmad Mir

Frontiers in Plant Science

doi 10.3389/fpls.2024.1407789

6,110 views
16 citations

Original Research

Published on 05 Jun 2024

Comprehensive analyses of the ARF gene family in cannabis reveals their potential roles in regulating cannabidiol biosynthesis and male flower development

in Functional and Applied Plant Genomics

Gen Pan
Xiaojuan Yang
Jiajia He
Zhenyi Liu
Fengming Chen
Jiayi Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1394337

2,331 views
1 citation

Correction

Published on 04 Jun 2024

Corrigendum: SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

in Functional and Applied Plant Genomics

Vaishnavi Mukkawar
Dipan Roy
Kawinnat Sue-ob
Andrew Jones
Cunjin Zhang
Prakash Kumar Bhagat
Sumesh M. Kakkunnath
Sigrid Heuer
Ari Sadanandom

Frontiers in Plant Science

doi 10.3389/fpls.2024.1412657

1,202 views

Original Research

Published on 03 Jun 2024

Genome-wide profiling of WRKY genes involved in flavonoid biosynthesis in Erigeron breviscapus

in Functional and Applied Plant Genomics

Wanling Song
Shuangyan Zhang
Qi Li
Guisheng Xiang
Yan Zhao
Fan Wei
Guanghui Zhang
Shengchao Yang
Bing Hao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1412574

2,980 views
6 citations

Original Research

Published on 30 May 2024

Comparative restriction enzyme analysis of methylation (CREAM) reveals methylome variability within a clonal in vitro cannabis population

in Functional and Applied Plant Genomics

Justin Boissinot
Kristian Adamek
Andrew Maxwell Phineas Jones
Eric Normandeau
Brian Boyle
Davoud Torkamaneh

Frontiers in Plant Science

doi 10.3389/fpls.2024.1381154

2,568 views
2 citations

Original Research

Published on 29 May 2024

Integrating GC-MS and comparative transcriptome analysis reveals that TsERF66 promotes the biosynthesis of caryophyllene in Toona sinensis tender leaves

in Functional and Applied Plant Genomics

Jianhua Dai
Minyan Wang
Hengfu Yin
Xiaojiao Han
Yanru Fan
Yi Wei
Jie Lin
Jun Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1378418

2,237 views
2 citations

Original Research

Published on 28 May 2024

Genome-wide identification and expression analysis of protein arginine methyltransferase and JmjC domain-containing family in apple

in Functional and Applied Plant Genomics

Shenghui Su
Min Ji
Jiaqi Chen
Meidie Zhang
Xiaozhao Xu
Chenxia Cheng

Frontiers in Plant Science

doi 10.3389/fpls.2024.1381753

2,480 views
5 citations

Original Research

Published on 28 May 2024

Comprehensive analysis of the Spartina alterniflora WD40 gene family reveals the regulatory role of SaTTG1 in plant development

in Functional and Applied Plant Genomics

Maogeng Yang
Shoukun Chen
Jiahui Geng
Shuqiang Gao
Shihua Chen
Huihui Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1390461

1,926 views
1 citation

Editorial

Published on 24 May 2024

Editorial: Impact of cutting-edge research on legume biology- new-age technological interventions in breeding and “omics” science for sustainable and new-age climate-smart plants

in Functional and Applied Plant Genomics

Musa Kavas
Sagarika Mishra

Frontiers in Plant Science

doi 10.3389/fpls.2024.1405440

1,556 views
1 citation

Original Research

Published on 22 May 2024

TriticeaeSSRdb: a comprehensive database of simple sequence repeats in Triticeae

in Functional and Applied Plant Genomics

Tingting Li
Shaoshuai Cai
Zhibo Cai
Yi Fu
Wenqiang Liu
Xiangdong Zhu
Chongde Lai
Licao Cui
Wenqiu Pan
Yihan Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1412953

3,023 views
2 citations

Original Research

Published on 17 May 2024

Fine mapping and candidate gene analysis of CRA8.1.6, which confers clubroot resistance in turnip (Brassica rapa ssp. rapa)

in Functional and Applied Plant Genomics

Xiaochun Wei
Shixiong Xiao
Yanyan Zhao
Luyue Zhang
Ujjal Kumar Nath
Shuangjuan Yang
Henan Su
Wenjing Zhang
Zhiyong Wang
Baoming Tian

Frontiers in Plant Science

doi 10.3389/fpls.2024.1355090

3,003 views
5 citations

Data Report

Published on 17 May 2024

A genomic dataset integrating genotyping-by-sequencing, SolCAP array and PCR marker data on tetraploid potato advanced breeding lines

in Functional and Applied Plant Genomics

Julien Leuenberger
Sanjeev Kumar Sharma
Karen McLean
Roland Pellé
Aurélie Bérard
Marie-Laure Lesage
Danièle Porhel
Marie-Ange Dantec
Jean-Eric Chauvin
Glenn J. Bryan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1384401

2,166 views
4 citations

Original Research

Published on 16 May 2024

Bulked segregant RNA-seq reveals complex resistance expression profile to powdery mildew in wild emmer wheat W762

in Functional and Applied Plant Genomics

Zejun Qian
Ruishan Liu
Xueqing Liu
Yanmin Qie
Jiangchun Wang
Yan Yin
Qingguo Xin
Ningning Yu
Jiadong Zhang
Yaoxue Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1387427

2,465 views
7 citations

623 articles

articles

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes

Genome-wide analysis of soybean hypoxia inducible gene domain containing genes: a functional investigation of GmHIGD3

The complete mitochondrial genome of Pontederia crassipes: using HiFi reads to investigate genome recombination and gene transfer from chloroplast genome

Reprogramming of DNA methylation and changes of gene expression in grafted Hevea brasiliensis

Genome-wide association study reveals 18 QTL for major agronomic traits in a Nordic–Baltic spring wheat germplasm

RNA-seq analysis reveals transcriptome reprogramming and alternative splicing during early response to salt stress in tomato root

Chromosome-level genome assembly of Ajuga decumbens

Unveiling the “hidden quality” of the walnut pellicle: a precious source of bioactive lipids

Fine mapping of QYrsv.swust-1BL for resistance to stripe rust in durum wheat Svevo

Seed development-related genes contribute to high yield heterosis in integrated utilization of elite autotetraploid and neo-tetraploid rice

Multiple transcription factors involved in the response of Chinese cabbage against Plasmodiophora brassicae

Uncovering the effect of waterlogging stress on plant microbiome and disease development: current knowledge and future perspectives

Comprehensive analyses of the ARF gene family in cannabis reveals their potential roles in regulating cannabidiol biosynthesis and male flower development

Corrigendum: SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and Arabidopsis

Genome-wide profiling of WRKY genes involved in flavonoid biosynthesis in Erigeron breviscapus

Comparative restriction enzyme analysis of methylation (CREAM) reveals methylome variability within a clonal in vitro cannabis population

Integrating GC-MS and comparative transcriptome analysis reveals that TsERF66 promotes the biosynthesis of caryophyllene in Toona sinensis tender leaves

Genome-wide identification and expression analysis of protein arginine methyltransferase and JmjC domain-containing family in apple

Comprehensive analysis of the Spartina alterniflora WD40 gene family reveals the regulatory role of SaTTG1 in plant development

Editorial: Impact of cutting-edge research on legume biology- new-age technological interventions in breeding and “omics” science for sustainable and new-age climate-smart plants

TriticeaeSSRdb: a comprehensive database of simple sequence repeats in Triticeae

Fine mapping and candidate gene analysis of CRA8.1.6, which confers clubroot resistance in turnip (Brassica rapa ssp. rapa)

A genomic dataset integrating genotyping-by-sequencing, SolCAP array and PCR marker data on tetraploid potato advanced breeding lines

Bulked segregant RNA-seq reveals complex resistance expression profile to powdery mildew in wild emmer wheat W762