Frontiers in Plant Science | Functional and Applied Plant Genomics

Original Research

Published on 05 Sep 2024

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis

in Functional and Applied Plant Genomics

Huiying Shang
Yuan Lu
Lulu Xun
Kun Wang
Bin Li
Yuxuan Liu
Tao Ma

Frontiers in Plant Science

doi 10.3389/fpls.2024.1414636

2,738 views
3 citations

Original Research

Published on 03 Sep 2024

Genetic mapping and molecular marker development for white flesh color in tomato

in Functional and Applied Plant Genomics

Jie Liu
Xiaoxue Fang
Fangjie Yu
Chengfeng Zhang
Pengfei Fan
Ningdong Wang
Qiao Shao
Ning Gan
Xiaolong Lv
Bo Ouyang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1459013

3,961 views
1 citation

Original Research

Published on 03 Sep 2024

Mitochondrial genome study of Camellia oleifera revealed the tandem conserved gene cluster of nad5–nads in evolution

in Functional and Applied Plant Genomics

Yiyang Gu
Liying Yang
Junqin Zhou
Zhun Xiao
Mengqi Lu
Yanling Zeng
Xiaofeng Tan

Frontiers in Plant Science

doi 10.3389/fpls.2024.1396635

2,386 views
2 citations

Original Research

Published on 03 Sep 2024

Genome-wide analysis of the WOX gene family and function exploration of RhWOX331 in rose (R. ‘The Fairy’)

in Functional and Applied Plant Genomics

Lian Duan
Zhihui Hou
Wuhua Zhang
Shuang Liang
Minge Huangfu
Jinzhu Zhang
Tao Yang
Jie Dong
Daidi Che

Frontiers in Plant Science

doi 10.3389/fpls.2024.1461322

3,244 views
7 citations

Original Research

Published on 30 Aug 2024

Brchli1 mutation induces bright yellow leaves by disrupting magnesium chelatase I subunit function in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

in Functional and Applied Plant Genomics

Chuanhong Liu
Yi Chai
Chong Tan
Fengyan Shi
Yun Zhang
Zhiyong Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1450242

2,561 views
2 citations

Original Research

Published on 29 Aug 2024

Illumina-based transcriptomic analysis of the fast-growing leguminous tree Acacia crassicarpa: functional gene annotation and identification of novel SSR-markers

in Functional and Applied Plant Genomics

Shougo Ishio
Kazutaka Kusunoki
Michiko Nemoto
Tadayoshi Kanao
Takashi Tamura

Frontiers in Plant Science

doi 10.3389/fpls.2024.1339958

2,458 views
2 citations

Original Research

Published on 26 Aug 2024

Genomic analyses of agronomic traits in tea plants and related Camellia species

in Functional and Applied Plant Genomics

Shengchang Duan
Liang Yan
Zongfang Shen
Xuzhen Li
Baozheng Chen
Dawei Li
Hantao Qin
Muditha K. Meegahakumbura
Moses C. Wambulwa
Lianming Gao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1449006

4,470 views
3 citations

Review

Published on 21 Aug 2024

Research progress and application strategies of sugar transport mechanisms in rice

in Functional and Applied Plant Genomics

Jun Li
Changcai He
Shihang Liu
Yuting Guo
Yuxiu Zhang
Lanjing Zhang
Xu Zhou
Dongyu Xu
Xu Luo
Hongying Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1454615

6,669 views
8 citations

Original Research

Published on 20 Aug 2024

Genetic dissection of value-added quality traits and agronomic parameters through genome-wide association mapping in bread wheat (T. aestivum L.)

in Functional and Applied Plant Genomics

Manish K. Vishwakarma
Pradeep K. Bhati
Uttam Kumar
Ravi P. Singh
Sundeep Kumar
Velu Govindan
Gurvinder Singh Mavi
Karthikeyan Thiyagarajan
Narain Dhar
Arun K. Joshi

Frontiers in Plant Science

doi 10.3389/fpls.2024.1419227

3,384 views
3 citations

Review

Published on 19 Aug 2024

The pleiotropic functions of GOLDEN2-LIKE transcription factors in plants

in Functional and Applied Plant Genomics

Mengyi Zheng
Xinyu Wang
Jie Luo
Bojun Ma
Dayong Li
Xifeng Chen

Frontiers in Plant Science

doi 10.3389/fpls.2024.1445875

5,811 views
10 citations

Original Research

Published on 19 Aug 2024

Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated

in Functional and Applied Plant Genomics

Yasufumi Kobayashi
Hideki Hirakawa
Kenta Shirasawa
Kazusa Nishimura
Kenichiro Fujii
Rolando Oros
Giovanna R. Almanza
Yukari Nagatoshi
Yasuo Yasui
Yasunari Fujita

Frontiers in Plant Science

doi 10.3389/fpls.2024.1434388

6,026 views
7 citations

Original Research

Published on 19 Aug 2024

Genome-wide analysis of the soybean eEF gene family and its involvement in virus resistance

in Functional and Applied Plant Genomics

Hexiang Luan
Daiqiao Song
Kai Huang
Shuxin Li
Hao Xu
Pradeep Kachroo
Aardra Kachroo
Longgang Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2024.1421221

2,703 views

Original Research

Published on 14 Aug 2024

Overexpression of the ribosome-inactivating protein OsRIP1 modulates the jasmonate signaling pathway in rice

in Functional and Applied Plant Genomics

Simin Chen
Noémie De Zutter
Anikó Meijer
Koen Gistelinck
Pieter Wytynck
Isabel Verbeke
Vinicius J. S. Osterne
Subramanyam Kondeti
Tim De Meyer
Kris Audenaert

Frontiers in Plant Science

doi 10.3389/fpls.2024.1385477

3,041 views
3 citations

Original Research

Published on 14 Aug 2024

Triple gene mutations boost amylose and resistant starch content in rice: insights from sbe2b/sbe1/OE-Wxa mutants

in Functional and Applied Plant Genomics

Xiaoqiong Chen
Qiaoling Guo
Xiaoli Yang
Meng Yuan
Jianguo Song
Hongyan Fu
Hongyu Zhang
Peizhou Xu
Yongxiang Liao
Asif Ali

Frontiers in Plant Science

doi 10.3389/fpls.2024.1452520

3,386 views
3 citations

Original Research

Published on 13 Aug 2024

Combination of transcriptomic, biochemical, and physiological analyses reveals sugar metabolism in Camellia drupifera fruit at different developmental stages

in Functional and Applied Plant Genomics

Zhen Liu
Chunhui Shen
Ruifan Chen
Zhiqiang Fu
Xiaomei Deng
Ruchun Xi

Frontiers in Plant Science

doi 10.3389/fpls.2024.1424284

2,669 views
7 citations

Original Research

Published on 13 Aug 2024

Comprehensive genetic diversity and genome-wide association studies revealed the genetic basis of avocado fruit quality traits

in Functional and Applied Plant Genomics

Jin Li
Shamseldeen Eltaher
Barbie Freeman
Sukhwinder Singh
Gul Shad Ali

Frontiers in Plant Science

doi 10.3389/fpls.2024.1433436

4,727 views
9 citations

Original Research

Published on 12 Aug 2024

The de novo assembly and characterization of the complete mitochondrial genome of bottle gourd (Lagenaria siceraria) reveals the presence of homologous conformations produced by repeat-mediated recombination

in Functional and Applied Plant Genomics

Nannan Qin
Shanjie Yang
Yunan Wang
Hui Cheng
Yang Gao
Xiaojing Cheng
Sen Li

Frontiers in Plant Science

doi 10.3389/fpls.2024.1416913

2,831 views
3 citations

Original Research

Published on 06 Aug 2024

Biological features and quality comprehensive analysis of twelve germplasm resources of the genus Allium from Tibet

in Functional and Applied Plant Genomics

Huaifeng Wang
Haixing Yang
Xuena Yu
Yongdong Xie
Yu Bai
Qiya Dai
Le Liang
Wen Tang
Mao Yong
Luzhou Wang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1393402

3,081 views
1 citation

Original Research

Published on 06 Aug 2024

A single amino acid substitution in the AAA-type ATPase LRD6-6 activates immune responses but decreases grain quality in rice

in Functional and Applied Plant Genomics

Junjie Yin
Cheng Zhang
Qianyu Zhang
Feiyan Long
Wen Hu
Yi Zhou
Fengying Mou
Yufeng Zhong
Bingxiu Wu
Min Zhu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1451897

3,042 views
3 citations

Original Research

Published on 02 Aug 2024

Chromosome-level assembly of Lindenbergia philippensis and comparative genomic analyses shed light on genome evolution in Lamiales

in Functional and Applied Plant Genomics

Bao-Zheng Chen
Da-Wei Li
Kai-Yong Luo
Song-Tao Jiu
Xiao Dong
Wei-Bin Wang
Xu-Zhen Li
Ting-Ting Hao
Ya-Hui Lei
Da-Zhong Guo

Frontiers in Plant Science

doi 10.3389/fpls.2024.1444234

9,819 views
4 citations

Original Research

Published on 01 Aug 2024

Fine mapping and functional validation of the maize nicosulfuron-resistance gene CYP81A9

in Functional and Applied Plant Genomics

Yongzhong Zhang
Qingrong Zhang
Qingzhi Liu
Yan Zhao
Wei Xu
Cuiping Hong
Changli Xu
Xiushan Qi
Xinli Qi
Baoshen Liu

Frontiers in Plant Science

doi 10.3389/fpls.2024.1443413

2,618 views
4 citations

Original Research

Published on 31 Jul 2024

Date palm transcriptome analysis provides new insights on changes in response to high salt stress of colonized roots with the endophytic fungus Piriformospora indica

in Functional and Applied Plant Genomics

Manzoor Ahmad
Mughair Abdul Aziz
Miloofer Sabeem
M. Sangeeta Kutty
Sathesh K. Sivasankaran
Faical Brini
Ting Ting Xiao
Ikram Blilou
Khaled Masmoudi

Frontiers in Plant Science

doi 10.3389/fpls.2024.1400215

6,394 views
20 citations

Original Research

Published on 30 Jul 2024

Comparative analysis of the mitochondrial genomes of four Dendrobium species (Orchidaceae) reveals heterogeneity in structure, synteny, intercellular gene transfer, and RNA editing

in Functional and Applied Plant Genomics

Le Wang
Xue Liu
Yongde Wang
Xingjia Ming
Junsheng Qi
Yiquan Zhou

Frontiers in Plant Science

doi 10.3389/fpls.2024.1429545

4,280 views
14 citations

Original Research

Published on 29 Jul 2024

Three novel QTLs for FHB resistance identified and mapped in spring wheat PI672538 by bulked segregant analysis of the recombinant inbred line

in Functional and Applied Plant Genomics

Qianglan Huang
Xin Li
Qing Li
Shengfu Zhong
Xiuying Li
Jiezhi Yang
Feiquan Tan
Tianheng Ren
Zhi Li
Yang Suizhuang

Frontiers in Plant Science

doi 10.3389/fpls.2024.1409095

3,135 views
3 citations

654 articles

articles

Genome assembly of Stephania longa provides insight into cepharanthine biosynthesis

Genetic mapping and molecular marker development for white flesh color in tomato

Mitochondrial genome study of Camellia oleifera revealed the tandem conserved gene cluster of nad5–nads in evolution

Genome-wide analysis of the WOX gene family and function exploration of RhWOX331 in rose (R. ‘The Fairy’)

Brchli1 mutation induces bright yellow leaves by disrupting magnesium chelatase I subunit function in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

Illumina-based transcriptomic analysis of the fast-growing leguminous tree Acacia crassicarpa: functional gene annotation and identification of novel SSR-markers

Genomic analyses of agronomic traits in tea plants and related Camellia species

Research progress and application strategies of sugar transport mechanisms in rice

Genetic dissection of value-added quality traits and agronomic parameters through genome-wide association mapping in bread wheat (T. aestivum L.)

The pleiotropic functions of GOLDEN2-LIKE transcription factors in plants

Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated

Genome-wide analysis of the soybean eEF gene family and its involvement in virus resistance

Overexpression of the ribosome-inactivating protein OsRIP1 modulates the jasmonate signaling pathway in rice

Triple gene mutations boost amylose and resistant starch content in rice: insights from sbe2b/sbe1/OE-Wxa mutants

Combination of transcriptomic, biochemical, and physiological analyses reveals sugar metabolism in Camellia drupifera fruit at different developmental stages

Comprehensive genetic diversity and genome-wide association studies revealed the genetic basis of avocado fruit quality traits

The de novo assembly and characterization of the complete mitochondrial genome of bottle gourd (Lagenaria siceraria) reveals the presence of homologous conformations produced by repeat-mediated recombination

Biological features and quality comprehensive analysis of twelve germplasm resources of the genus Allium from Tibet

A single amino acid substitution in the AAA-type ATPase LRD6-6 activates immune responses but decreases grain quality in rice

Chromosome-level assembly of Lindenbergia philippensis and comparative genomic analyses shed light on genome evolution in Lamiales

Fine mapping and functional validation of the maize nicosulfuron-resistance gene CYP81A9

Date palm transcriptome analysis provides new insights on changes in response to high salt stress of colonized roots with the endophytic fungus Piriformospora indica

Comparative analysis of the mitochondrial genomes of four Dendrobium species (Orchidaceae) reveals heterogeneity in structure, synteny, intercellular gene transfer, and RNA editing

Three novel QTLs for FHB resistance identified and mapped in spring wheat PI672538 by bulked segregant analysis of the recombinant inbred line