Frontiers in Plant Science | Plant Bioinformatics

Original Research

Published on 26 Sep 2023

Chloroplast genome assembly of Serjania erecta Raldk: comparative analysis reveals gene number variation and selection in protein-coding plastid genes of Sapindaceae

in Plant Bioinformatics

Leonardo C. J. Corvalán
Mariane B. Sobreiro
Larissa R. Carvalho
Renata O. Dias
Ramilla S. Braga-Ferreira
Cintia P. Targueta
Carlos M. e Silva-Neto
Bianca W. Berton
Ana Maria S. Pereira
José A. F. Diniz-filho

Frontiers in Plant Science

doi 10.3389/fpls.2023.1258794

3,281 views
6 citations

Original Research

Published on 21 Sep 2023

Genome-wide analysis of the GRAS gene family in Liriodendron chinense reveals the putative function in abiotic stress and plant development

in Plant Bioinformatics

Yuhao Weng
Xinying Chen
Zhaodong Hao
Lu Lu
Xinru Wu
Jiaji Zhang
Jingxiang Wu
Jisen Shi
Jinhui Chen

Frontiers in Plant Science

doi 10.3389/fpls.2023.1211853

3,470 views
6 citations

Original Research

Published on 20 Sep 2023

Full-length transcriptome analysis revealed that 2,4-dichlorophenoxyacetic acid promoted in vitro bulblet initiation in lily by affecting carbohydrate metabolism and auxin signaling

in Plant Bioinformatics

Cong Gao
Lin Zhang
Yunchen Xu
Yue Liu
Xiao Xiao
Liu Cui
Yiping Xia
Yun Wu
Ziming Ren

Frontiers in Plant Science

doi 10.3389/fpls.2023.1236315

3,601 views
5 citations

Original Research

Published on 20 Sep 2023

Genome-wide identification and expression profiling analysis of DIR gene family in Setaria italica

in Plant Bioinformatics

Luping Gong
Bingbing Li
Tao Zhu
Baoping Xue

Frontiers in Plant Science

doi 10.3389/fpls.2023.1243806

5,335 views
19 citations

Editorial

Published on 19 Sep 2023

Editorial: Mining and utilization of favorable gene resources in rice

in Plant Bioinformatics

Ying Wang
Xueyong Li
Ryuji Ishikawa
Xiaojin Luo

Frontiers in Plant Science

doi 10.3389/fpls.2023.1289069

1,642 views
2 citations

Perspective

Published on 18 Sep 2023

Advances in alternative splicing identification: deep learning and pantranscriptome

in Plant Bioinformatics

Fei Shen
Chenyang Hu
Xin Huang
Hao He
Deng Yang
Jirong Zhao
Xiaozeng Yang

Frontiers in Plant Science

doi 10.3389/fpls.2023.1232466

6,061 views
8 citations

Editorial

Published on 18 Sep 2023

Editorial: Synthetic data for computer vision in agriculture

in Plant Bioinformatics

Manya Afonso
Valerio Giufrida

Frontiers in Plant Science

doi 10.3389/fpls.2023.1277073

2,682 views
3 citations

Original Research

Published on 15 Sep 2023

Recent genome resequencing paraded COBRA-Like gene family roles in abiotic stress and wood formation in Poplar

in Plant Bioinformatics

Muhammad Sajjad
Adeel Ahmad
Muhammad Waheed Riaz
Quaid Hussain
Muhammad Yasir
Meng‐Zhu Lu

Frontiers in Plant Science

doi 10.3389/fpls.2023.1242836

5,254 views
17 citations

Original Research

Published on 14 Sep 2023

Dissecting the genetic basis of drought responses in common bean using natural variation

in Plant Bioinformatics

Diana Labastida
Pär K. Ingvarsson
Martha Rendón-Anaya

Frontiers in Plant Science

doi 10.3389/fpls.2023.1143873

5,349 views
22 citations

Original Research

Published on 13 Sep 2023

Integrative analysis of metabolome, proteome, and transcriptome for identifying genes influencing total lignin content in Populus trichocarpa

in Plant Bioinformatics

Jia Zhao
Kairui Chao
Achuan Wang

Frontiers in Plant Science

doi 10.3389/fpls.2023.1244020

3,406 views
6 citations

Original Research

Published on 07 Sep 2023

Light response of gametophyte in Adiantum flabellulatum: transcriptome analysis and identification of key genes and pathways

in Plant Bioinformatics

Zeping Cai
Xiaochen Wang
Zhenyu Xie
Zhenyi Wen
Xudong Yu
Shitao Xu
Xinyu Su
Jiajia Luo

Frontiers in Plant Science

doi 10.3389/fpls.2023.1222414

2,632 views
2 citations

Editorial

Published on 06 Sep 2023

Editorial: Challenges and progressions in herbal genomics

in Plant Bioinformatics

Yinghao Cao
Zemin Ning
Yiqiang Zhao

Frontiers in Plant Science

doi 10.3389/fpls.2023.1273769

1,883 views
2 citations

Original Research

Published on 31 Aug 2023

Physiological and lipidomic response of exogenous choline chloride alleviating salt stress injury in Kentucky bluegrass (Poa pratensis)

in Plant Bioinformatics

Zhi-Fang Zuo
Yan Li
Xin-Feng Mi
Yong-Long Li
Chen-Yuan Zhai
Guo-Feng Yang
Zeng-Yu Wang
Kun Zhang

Frontiers in Plant Science

doi 10.3389/fpls.2023.1269286

4,535 views
18 citations

Original Research

Published on 31 Aug 2023

Comparative transcriptional and co-expression network analysis of two upland cotton accessions with extreme phenotypic differences reveals molecular mechanisms of fiber development

in Plant Bioinformatics

Jiasen He
Zhongyang Xu
Muhammad Tehseen Azhar
Zhen Zhang
Pengtao Li
Juwu Gong
Xiao Jiang
Senmiao Fan
Qun Ge
Youlu Yuan

Frontiers in Plant Science

doi 10.3389/fpls.2023.1189490

3,693 views
1 citation

Review

Published on 30 Aug 2023

Plant resistance against whitefly and its engineering

in Plant Bioinformatics

Di Li
Heng-Yu Li
Jing-Ru Zhang
Yi-Jie Wu
Shi-Xing Zhao
Shu-Sheng Liu
Li-Long Pan

Frontiers in Plant Science

doi 10.3389/fpls.2023.1232735

10,021 views
22 citations

Original Research

Published on 23 Aug 2023

Transcriptome and metabolome analysis reveals the effect of flavonoids on flower color variation in Dendrobium nobile Lindl.

in Plant Bioinformatics

Yujie Qiu
Chengcheng Cai
Xu Mo
Xinyi Zhao
Lijuan Wu
Fan Liu
Rui Li
Chen Liu
Ji Chen
Mengliang Tian

Frontiers in Plant Science

doi 10.3389/fpls.2023.1220507

6,171 views
24 citations

Original Research

Published on 23 Aug 2023

Comparative analysis of the medicinal plant Polygonatum kingianum (Asparagaceae) with related verticillate leaf types of the Polygonatum species based on chloroplast genomes

in Plant Bioinformatics

Naixing Shi
Zefen Yang
Ke Miao
Lilei Tang
Nian Zhou
Pingxuan Xie
Guosong Wen

Frontiers in Plant Science

doi 10.3389/fpls.2023.1202634

3,515 views
6 citations

Original Research

Published on 22 Aug 2023

RETRACTED: Smart high-yield tomato cultivation: precision irrigation system using the Internet of Things

in Plant Bioinformatics

Debabrata Singh
Anil Kumar Biswal
Debabrata Samanta
Vijendra Singh
Seifedine Kadry
Awais Khan
Yunyoung Nam

Frontiers in Plant Science

doi 10.3389/fpls.2023.1239594

17,892 views
27 citations

Original Research

Published on 18 Aug 2023

Development and application of Single Primer Enrichment Technology (SPET) SNP assay for population genomics analysis and candidate gene discovery in lettuce

in Plant Bioinformatics

Pasquale Tripodi
Massimiliano Beretta
Damien Peltier
Ilias Kalfas
Christos Vasilikiotis
Anthony Laidet
Gael Briand
Charlotte Aichholz
Tizian Zollinger
Rob van Treuren

Frontiers in Plant Science

doi 10.3389/fpls.2023.1252777

6,894 views
11 citations

Original Research

Published on 17 Aug 2023

Differential gene expression of Asian citrus psyllids infected with ‘Ca. Liberibacter asiaticus’ reveals hyper-susceptibility to invasion by instar fourth-fifth and teneral adult stages

in Plant Bioinformatics

Ruifeng He
Tonja W. Fisher
Surya Saha
Kirsten Peiz-Stelinski
Mark A. Willis
David R. Gang
Judith K. Brown

Frontiers in Plant Science

doi 10.3389/fpls.2023.1229620

3,667 views
7 citations

Original Research

Published on 16 Aug 2023

Potential regulatory genes of light induced anthocyanin accumulation in sweet cherry identified by combining transcriptome and metabolome analysis

in Plant Bioinformatics

Yao Zhang
Chaoqun Chen
Yiling Cui
Qinsong Du
Wenjing Tang
Wenlong Yang
Guanqiong Kou
Wanjia Tang
Hongxu Chen
Ronggao Gong

Frontiers in Plant Science

doi 10.3389/fpls.2023.1238624

6,359 views
18 citations

Original Research

Published on 15 Aug 2023

Genome-wide identification and characterization of Puccinia striiformis-responsive lncRNAs in Triticum aestivum

in Plant Bioinformatics

Parinita Das
Monendra Grover
Dwijesh Chandra Mishra
Sayanti Guha Majumdar
Bharti Shree
Sundeep Kumar
Zahoor Ahmad Mir
Krishna Kumar Chaturvedi
Subhash Chander Bhardwaj
Amit Kumar Singh

Frontiers in Plant Science

doi 10.3389/fpls.2023.1120898

5,105 views
11 citations

Review

Published on 14 Aug 2023

Genome-wide association study as a powerful tool for dissecting competitive traits in legumes

in Plant Bioinformatics

Pusarla Susmitha
Pawan Kumar
Pankaj Yadav
Smrutishree Sahoo
Gurleen Kaur
Manish K. Pandey
Varsha Singh
Te Ming Tseng
Sunil S. Gangurde

Frontiers in Plant Science

doi 10.3389/fpls.2023.1123631

13,186 views
38 citations

Original Research

Published on 14 Aug 2023

Multiomics studies with co-transformation reveal microRNAs via miRNA-TF-mRNA network participating in wood formation in Hevea brasiliensis

in Plant Bioinformatics

Jinhui Chen
Mingming Liu
Xiangxu Meng
Yuanyuan Zhang
Yue Wang
Nanbo Jiao
Jianmiao Chen

Frontiers in Plant Science

doi 10.3389/fpls.2023.1068796

2,624 views
2 citations

799 articles

articles

Chloroplast genome assembly of Serjania erecta Raldk: comparative analysis reveals gene number variation and selection in protein-coding plastid genes of Sapindaceae

Genome-wide analysis of the GRAS gene family in Liriodendron chinense reveals the putative function in abiotic stress and plant development

Full-length transcriptome analysis revealed that 2,4-dichlorophenoxyacetic acid promoted in vitro bulblet initiation in lily by affecting carbohydrate metabolism and auxin signaling

Genome-wide identification and expression profiling analysis of DIR gene family in Setaria italica

Editorial: Mining and utilization of favorable gene resources in rice

Advances in alternative splicing identification: deep learning and pantranscriptome

Editorial: Synthetic data for computer vision in agriculture

Recent genome resequencing paraded COBRA-Like gene family roles in abiotic stress and wood formation in Poplar

Dissecting the genetic basis of drought responses in common bean using natural variation

Integrative analysis of metabolome, proteome, and transcriptome for identifying genes influencing total lignin content in Populus trichocarpa

Light response of gametophyte in Adiantum flabellulatum: transcriptome analysis and identification of key genes and pathways

Editorial: Challenges and progressions in herbal genomics

Physiological and lipidomic response of exogenous choline chloride alleviating salt stress injury in Kentucky bluegrass (Poa pratensis)

Comparative transcriptional and co-expression network analysis of two upland cotton accessions with extreme phenotypic differences reveals molecular mechanisms of fiber development

Plant resistance against whitefly and its engineering

Transcriptome and metabolome analysis reveals the effect of flavonoids on flower color variation in Dendrobium nobile Lindl.

Comparative analysis of the medicinal plant Polygonatum kingianum (Asparagaceae) with related verticillate leaf types of the Polygonatum species based on chloroplast genomes

RETRACTED: Smart high-yield tomato cultivation: precision irrigation system using the Internet of Things

Development and application of Single Primer Enrichment Technology (SPET) SNP assay for population genomics analysis and candidate gene discovery in lettuce

Differential gene expression of Asian citrus psyllids infected with ‘Ca. Liberibacter asiaticus’ reveals hyper-susceptibility to invasion by instar fourth-fifth and teneral adult stages

Potential regulatory genes of light induced anthocyanin accumulation in sweet cherry identified by combining transcriptome and metabolome analysis

Genome-wide identification and characterization of Puccinia striiformis-responsive lncRNAs in Triticum aestivum

Genome-wide association study as a powerful tool for dissecting competitive traits in legumes

Multiomics studies with co-transformation reveal microRNAs via miRNA-TF-mRNA network participating in wood formation in Hevea brasiliensis