Abstract
Tuberculosis (TB) in humans is a global public health concern and the discovery of animal cases of Mycobacterium tuberculosis (Mtb) infection and disease, especially in multi-host settings, also has significant implications for public health, veterinary disease control, and conservation endeavors. This paper describes a fatal case of Mtb disease in a free-ranging African elephant (Loxodonta africana) in a high human TB burden region. Necropsy revealed extensive granulomatous pneumonia, from which Mtb was isolated and identified as a member of LAM3/F11 lineage; a common lineage found in humans in South Africa. These findings are contextualized within a framework of emerging Mtb disease in wildlife globally and highlights the importance of the One Health paradigm in addressing this anthroponotic threat to wildlife and the zoonotic implications.
Introduction
Tuberculosis (TB) is the leading cause of death from a bacterial infectious disease in humans. Caused by Mycobacterium tuberculosis (Mtb), approximately one third of the global population is thought to be infected, with high burdens in lower income countries, including much of Africa and Asia (). The socioeconomic, and public health costs can be staggering; for example, in South Africa, where 244,053 people were reported with TB in 2016, the national TB program budget (US$244 million) was a significant proportion of the national budget (). However, these figures neglect the potential impact of human TB on other incidental host species, especially livestock, and wildlife.
Many high human TB burden countries are dependent on animal-related industries such as agriculture and tourism to support their economy. With encroachment of human settlements into land previously used for agriculture or natural habitats, there are increased opportunities for disease transmission at the interface between animals and people. Despite the emerging field of “One Health” and growing knowledge of the zoonotic risks of animal diseases (), few studies have assessed the impact of human diseases on animals (). Tuberculosis, caused by Mtb, has been reported in cattle in rural areas of Africa, including the Eastern Cape Province of South Africa, as well as in captive wildlife and pets (–). However, infections with Mtb have been discovered only recently in free-ranging wildlife in Asia (–). Although animals are typically considered dead-end hosts for Mtb, there is evidence that infected elephants are capable of spreading infection to other elephants and different species, including humans (–). Therefore, discovery of animal cases of Mtb infection and disease, especially in free-range, multi-host settings, could have significant implications for species management, public health and veterinary disease control, and conservation endeavors. This case of Mtb disease in a free-ranging African elephant highlights the importance of applying the One Health paradigm to address anthroponoses where important human pathogens, such as Mtb, can be introduced into wildlife populations ().
Materials and Methods
Case
In October 2016, the fresh carcass of an African elephant bull (estimated age 45 years) was found near the tourist and staff camp of Tshokwane (S24° 47′ 9.24″ E 31° 51′ 33.12″), in the Kruger National Park (KNP), South Africa. The animal was in poor body condition with no external wounds or injuries. Another bull elephant was observed in close proximity to this animal but appeared to be in good body condition. Samples taken at necropsy included sections of lungs and lymph nodes that were frozen for mycobacterial culture and placed in 10% buffered formalin for histopathology, impression smears of lesions for acid-fast stain cytology, and heart blood for serological tests. Safety precautions and biosecurity measures were implemented during the necropsy. Infected lungs and other organs were removed from the carcass and incinerated.
Serological Assays
Whole blood was collected from the heart into serum separator tubes, which formed a clot, and then serum was harvested by centrifuged at 3,000 x g for 10 min. Serology to detect the presence of antibodies to Mtb complex (MTBC)-specific antigens was performed using the Chembio DPP VetTB assay (Chembio Diagnostic Systems, Inc., Medford, NY) and the multi-antigen print immunoassay (MAPIA) (, ).
Mycobacterial Culture, Speciation, and Whole Genome Sequencing
Lung and lymph node tissues were processed for mycobacterial culture using the BACTEC™ Mycobacteria Growth Indicator Tube (MGIT™) system in a BSL3 laboratory (). An aliquot from each of the MGIT, containing acid-fast positive bacteria, was genetically speciated by PCR (). The isolate was re-cultured and used for DNA extraction as previously described (). Whole genome sequencing was performed using the NexteraXT library preparation kit (Illumina, San Diego, CA, USA) and sequenced using 2x250 paired end chemistry on a MiSeq (Illumina). Whole genome sequences are available under BioProject ID: PRJNA430907. See Supplementary Methods for additional details on whole genome sequencing data analysis.
Results
At necropsy, an estimated 80% of the left lung and 40–50% of the right lung consisted of multifocal to coalescing encapsulated cavities (10–15 cm in diameter) (Figure 1). The lungs contained a mixture of cavitating lesions and miliary focal granulomas (Figure 2). Impression smears showed clusters of acid-fast positive bacilli. The primary histological finding was multifocal pyogranulomatous pneumonia. Granulomas comprised central foci of variably mineralized necrotic debris and clusters of acid-fast positive bacilli encapsulated in variably thick layers of macrophages and epithelioid cells (many of which contained haematoidin pigment), mixed with small numbers of multinucleate giant cells, lymphocytes, and plasma cells (Figure 3). Similar lesions were found in the bronchial lymph nodes.
Figure 1
Figure 2
Figure 3
High intensity of the test line in the Chembio DPP VetTB assay suggested the presence of IgG antibodies to MTBC-specific fusion antigen ESAT-6/CFP10 (Figure 4). In addition, the presence of high intensity lines for the MTBC-specific antigens including CFP10 protein, ESAT-6/CFP10 fusion protein, and DID65 fusion (MPT70/PstS1/CFP10) protein (), using the multi-antigen print immunoassay (MAPIA), supported a presumptive diagnosis of TB (Figure 5) (, ).
Figure 4
Figure 5

Image of MAPIA results are shown for African elephant diagnosed with Mtb disease (right strip) and a negative control African elephant (left strip); names and positions of immobilized antigens are shown on the right margin; visible bands on the strip indicate the presence of IgG antibody to corresponding antigens.
Mycobacterium tuberculosis was isolated from lung, pooled head (retropharyngeal, mandibular), thoracic (mediastinal, tracheobronchial), and mesenteric lymph nodes, which were all the samples collected for mycobacterial culture due to the presence of gross lesions. Spoligotyping to confirm infection (rather than laboratory contaminant) and characterization of the separate culture isolates was performed. The isolates were characterized as belonging to the SIT33/LAM3/F11 family (
Figure 6

Phylogenetic tree showing the relationship of the elephant Mtb isolate to other known human Mtb isolates; with clustering of the elephant isolate in the LAM3/F11 family.
Discussion
This is the first confirmed case of Mtb disease in a free-ranging African elephant and suggests that this anthroponosis may be a greater threat to wildlife populations in Africa than previously recognized. Previously, a presumptive diagnosis of TB was made in a free-ranging African elephant with past human contact in Kenya, but culture of affected tissues was not performed and infection and identity of the suspected MTBC organism were not confirmed (
Mycobacterium bovis is endemic in KNP, where multiple host species are infected (
Since the Mtb isolate from the African elephant clustered with the F11 strain commonly found in human TB patients in South Africa (
This case is similar to those found in Asia with no identifiable source of Mtb found in free-ranging Asian elephants from parks where tourists have no direct contact with animals (
Transmission of Mtb between humans and from humans to animals has been linked to prolonged close contact, primarily through aerosols (
Indirect contact through environmental contamination is recognized as a risk factor for inter-species transmission of M. bovis, another member of the MTBC. Cattle have been infected by sharing grazing and water sources contaminated by secretions from M. bovis-infected badgers, fallow and red deer, white-tailed deer, and wild boar (
Since elephants frequently use their trunk to investigate their environment, it is possible that the elephant in the present case became infected through aerosolization of bacteria on contaminated food or domestic waste from a Mtb-infected human. Urine from infected humans may also contaminate the environment and be a source of Mtb. Studies have shown that pathogenic mycobacteria in fresh human urine could survive up to 2 weeks at 30°C and up to 6 weeks at 15°C (
Although the exact location, number and duration of potential exposures are unknown for this elephant, it is possible that it was a single and brief event. Although frequent and prolonged exposure to a person with TB disease increases the risk of TB infection in humans, infection after casual contact can occur as demonstrated by a human case after a visit to a work site three times, for <15 min per visit (
The knowledge gaps evident in this case regarding a human pathogen in a wildlife species highlights the One Health focus required to address the issue of TB at the human-animal interface. Wildlife TB is recognized as a serious barrier to animal conservation efforts in South-East Asia (
Of the 30 high-burden countries listed by the World Health Organization, 22 are elephant range countries, as well as supporting other iconic and endangered wildlife populations, including African wild dogs, mountain gorillas, Malaysian tigers, and black and Sumatran rhinoceros (
Data on Mtb cases in African wildlife is limited compared to that in Asian species. Mycobacterium tuberculosis was diagnosed in eight species of wildlife at the National Zoological Gardens in South Africa (
Disease surveillance is essential to determine the presence and extent of Mtb infection in wildlife, however this is limited by the logistical challenges associated with acquiring fresh samples from carcasses. This can be overcome by ante-mortem testing, although there is a paucity of diagnostic tests available for TB detection in wildlife. Serological assays and trunk wash sampling for mycobacterial cultures have been used to identify infected elephants (
Advances in molecular epidemiological and other diagnostic techniques have facilitated understanding of inter-species transmission (
Statements
Author contributions
MM, PB, GH, and LvS conducted the post-mortem examination. EM performed histopathological examination. MM, AS-G, and KL performed serological tests. ER, RW, and AD performed mycobacterial cultures and speciation. SR-A and AD performed whole genome sequencing and analyzed whole genome sequence data. MM, PB, ER, AD, PvH, SP, RW, WW, and KL had key input into project design. All authors assisted with writing and editing the manuscript.
Acknowledgments
The authors wish to acknowledge the Veterinary Wildlife Services staff of South African National Parks for providing access to this case and support; and to the laboratory staff of the Faculty of Veterinary Science, University of Pretoria for valuable assistance with tissue processing for histopathology. This work was supported by the South African Medical Research Council and National Research Foundation, including the South African Research Chair Initiative (grant number 86949); and by National Research Foundation core funding given to the National Zoological Gardens. The content is the sole responsibility of the authors and does not necessarily represent the official views of the South African Medical Research Council or National Research Foundation.
Conflict of interest
KL and AS-G are employed by Chembio Diagnostic Systems, Inc. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fvets.2019.00018/full#supplementary-material
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Summary
Keywords
African elephant, anthroponosis, Loxodonta africana, Mycobacterium tuberculosis, one health, tuberculosis, wildlife disease
Citation
Miller MA, Buss P, Roos EO, Hausler G, Dippenaar A, Mitchell E, van Schalkwyk L, Robbe-Austerman S, Waters WR, Sikar-Gang A, Lyashchenko KP, Parsons SDC, Warren R and van Helden P (2019) Fatal Tuberculosis in a Free-Ranging African Elephant and One Health Implications of Human Pathogens in Wildlife. Front. Vet. Sci. 6:18. doi: 10.3389/fvets.2019.00018
Received
26 July 2018
Accepted
17 January 2019
Published
06 February 2019
Volume
6 - 2019
Edited by
Kathryn Christine Gamble, Lincoln Park Zoo, United States
Reviewed by
Larry Vogelnest, Taronga Conservation Society Australia, Australia; Willem Schaftenaar, Rotterdam Zoo, Netherlands; Scott Terrell, University of Florida, United States
Updates

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Copyright
© 2019 Miller, Buss, Roos, Hausler, Dippenaar, Mitchell, van Schalkwyk, Robbe-Austerman, Waters, Sikar-Gang, Lyashchenko, Parsons, Warren and van Helden.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Michele A. Miller miller@sun.ac.zaPeter Buss peter.buss@sanparks.org
This article was submitted to Zoological Medicine, a section of the journal Frontiers in Veterinary Science
†These authors share co-first authorship
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